Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040230 | RYR59111.1 | 55.153 | 359 | 123 | 5 | 13 | 335 | 8 | 364 | 1.70e-128 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040230 | sp|P05332|YP20_BACLI | 35.503 | 169 | 100 | 4 | 171 | 333 | 10 | 175 | 1.35e-21 | 93.6 |
| Msa0040230 | sp|P05332|YP20_BACLI | 28.025 | 157 | 91 | 3 | 23 | 159 | 8 | 162 | 1.21e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0040230 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040230 | MtrunA17_Chr5g0394631 | 51.605 | 405 | 123 | 11 | 1 | 336 | 1 | 401 | 4.92e-128 | 372 |
| Msa0040230 | MtrunA17_Chr1g0204951 | 95.238 | 189 | 9 | 0 | 148 | 336 | 2 | 190 | 1.06e-127 | 363 |
| Msa0040230 | MtrunA17_Chr1g0204951 | 75.287 | 174 | 28 | 2 | 1 | 159 | 1 | 174 | 1.22e-82 | 248 |
| Msa0040230 | MtrunA17_Chr1g0204971 | 84.656 | 189 | 29 | 0 | 148 | 336 | 2 | 190 | 8.53e-116 | 333 |
| Msa0040230 | MtrunA17_Chr1g0204971 | 87.654 | 162 | 5 | 2 | 1 | 147 | 1 | 162 | 1.56e-93 | 276 |
| Msa0040230 | MtrunA17_Chr5g0394621 | 64.398 | 191 | 64 | 2 | 148 | 336 | 2 | 190 | 2.58e-83 | 250 |
| Msa0040230 | MtrunA17_Chr5g0394621 | 57.927 | 164 | 50 | 3 | 1 | 147 | 1 | 162 | 9.45e-57 | 182 |
| Msa0040230 | MtrunA17_Chr7g0273661 | 47.436 | 156 | 77 | 2 | 165 | 318 | 4 | 156 | 1.36e-42 | 145 |
| Msa0040230 | MtrunA17_Chr7g0273661 | 41.176 | 153 | 70 | 3 | 19 | 154 | 4 | 153 | 1.06e-29 | 111 |
| Msa0040230 | MtrunA17_Chr7g0223351 | 43.293 | 164 | 90 | 3 | 168 | 331 | 7 | 167 | 5.39e-37 | 131 |
| Msa0040230 | MtrunA17_Chr7g0223351 | 36.076 | 158 | 81 | 3 | 22 | 162 | 7 | 161 | 1.93e-26 | 103 |
| Msa0040230 | MtrunA17_Chr7g0223361 | 40.476 | 168 | 98 | 2 | 163 | 330 | 2 | 167 | 1.31e-36 | 130 |
| Msa0040230 | MtrunA17_Chr7g0223361 | 37.500 | 144 | 77 | 3 | 17 | 147 | 2 | 145 | 3.70e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040230 | AT2G32020.1 | 54.938 | 162 | 68 | 3 | 171 | 331 | 21 | 178 | 5.28e-56 | 181 |
| Msa0040230 | AT2G32020.1 | 45.652 | 138 | 63 | 2 | 22 | 147 | 18 | 155 | 2.11e-35 | 127 |
| Msa0040230 | AT2G32030.1 | 47.340 | 188 | 94 | 3 | 147 | 333 | 2 | 185 | 3.66e-55 | 179 |
| Msa0040230 | AT2G32030.1 | 44.526 | 137 | 64 | 2 | 23 | 147 | 24 | 160 | 1.60e-34 | 125 |
| Msa0040230 | AT3G22560.1 | 45.342 | 161 | 81 | 3 | 172 | 328 | 10 | 167 | 5.66e-37 | 131 |
| Msa0040230 | AT3G22560.1 | 38.608 | 158 | 75 | 3 | 18 | 156 | 2 | 156 | 2.68e-23 | 95.1 |
Find 77 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGAGCTCCATGTATT+GGG | 0.213171 | 1_1:-70305923 | Msa0040230:CDS |
| AGTGGTTGAAGCTGCATTTA+AGG | 0.225095 | 1_1:-70305869 | Msa0040230:CDS |
| CTCTTCCTTGGCATCTGATT+TGG | 0.234671 | 1_1:+70306218 | None:intergenic |
| CTCTTCTTTAGCATCTGATT+TGG | 0.255230 | 1_1:+70304377 | None:intergenic |
| CCGTCTTCTTTGTTTGTATA+AGG | 0.260514 | 1_1:+70304240 | None:intergenic |
| TGCTATGAGCTCCAAGTATT+GGG | 0.261207 | 1_1:-70304082 | Msa0040230:CDS |
| TTCAGATCTTGATGATGTTT+TGG | 0.285412 | 1_1:-70304307 | Msa0040230:CDS |
| ATTCTTTGAGCTCCATGTAT+TGG | 0.293943 | 1_1:-70305924 | Msa0040230:CDS |
| GCCTCAAGCCTCTCCAAGTA+TGG | 0.329009 | 1_1:+70305841 | None:intergenic |
| GAGATTTGCTTGCTATGTTT+TGG | 0.329625 | 1_1:+70304205 | None:intergenic |
| GAGATTTGCTTGCTATGTTT+TGG | 0.329625 | 1_1:+70306046 | None:intergenic |
| CCTTATACAAACAAAGAAAA+AGG | 0.343403 | 1_1:-70306081 | Msa0040230:CDS |
| ATCAAGATCTGAAAGACTAA+TGG | 0.348689 | 1_1:+70304317 | None:intergenic |
| GGGCAAAGGGATTGCCACTA+TGG | 0.352044 | 1_1:-70305902 | Msa0040230:CDS |
| TCAAGATCAGAAAGACTAAT+TGG | 0.352059 | 1_1:+70306159 | None:intergenic |
| CTTGGCATCTGATTTGGAAT+AGG | 0.366431 | 1_1:+70306224 | None:intergenic |
| TTTAGCATCTGATTTGGAAT+AGG | 0.367598 | 1_1:+70304383 | None:intergenic |
| AATACCTTTGCCCCAATACT+TGG | 0.403153 | 1_1:+70304071 | None:intergenic |
| ATTTAAGGAGTTTCCATACT+TGG | 0.408342 | 1_1:-70305854 | Msa0040230:CDS |
| TGCCTTCGCGATCGAGCAAT+CGG | 0.411073 | 1_1:-70304165 | Msa0040230:CDS |
| ACATAGCAAGCAAATCTCTA+TGG | 0.412043 | 1_1:-70304200 | Msa0040230:CDS |
| ACATAGCAAGCAAATCTCTA+TGG | 0.412043 | 1_1:-70306041 | Msa0040230:intron |
| CAAAGGGTGTTGGAGAAGGC+TGG | 0.437360 | 1_1:-70303949 | Msa0040230:CDS |
| CAAAGGGTGTTGGAGAAGGC+TGG | 0.437360 | 1_1:-70305790 | Msa0040230:CDS |
| AGGAACAAATCTGCTGAACT+TGG | 0.442081 | 1_1:-70304108 | Msa0040230:CDS |
| ATGCTATGAGCTCCAAGTAT+TGG | 0.448265 | 1_1:-70304083 | Msa0040230:CDS |
| TACCGAGTTCCAGGTGTGTT+CGG | 0.452367 | 1_1:-70305980 | Msa0040230:intron |
| TAATTGGTCGAAGAGAGATT+TGG | 0.457252 | 1_1:+70306175 | None:intergenic |
| CTTGAGCTTCAAGCCGCTCC+AGG | 0.458231 | 1_1:+70303995 | None:intergenic |
| CGGGACAAATCTGCTCAACT+TGG | 0.459831 | 1_1:-70305949 | Msa0040230:CDS |
| TCAAGATCTGAAAGACTAAT+GGG | 0.460408 | 1_1:+70304318 | None:intergenic |
| GCCTTCGCGATCGAGCAATT+GGG | 0.464374 | 1_1:-70306005 | Msa0040230:intron |
| CAGAAAATATCTGTTCATCA+AGG | 0.472630 | 1_1:-70303905 | Msa0040230:CDS |
| GCTTCAAGCCGCTCCAGGTA+TGG | 0.487071 | 1_1:+70304000 | None:intergenic |
| AGCTCCATGTATTGGGGCAA+AGG | 0.494926 | 1_1:-70305916 | Msa0040230:CDS |
| GTTATGTTCAGTATTCTCTC+AGG | 0.496470 | 1_1:-70303865 | Msa0040230:CDS |
| AATCCCTTTGCCCCAATACA+TGG | 0.496567 | 1_1:+70305912 | None:intergenic |
| CACTTGTTTCACAACCATAG+TGG | 0.504807 | 1_1:+70305888 | None:intergenic |
| AGGTGTGTTCGGATAGATGC+CGG | 0.506000 | 1_1:-70305969 | Msa0040230:CDS |
| TTCTCAAAGGGTGTTGGAGA+AGG | 0.511828 | 1_1:-70303953 | Msa0040230:CDS |
| TTCTCAAAGGGTGTTGGAGA+AGG | 0.511828 | 1_1:-70305794 | Msa0040230:CDS |
| AACAACAGAATACTCTTCCT+TGG | 0.516633 | 1_1:+70306206 | None:intergenic |
| TAGAAAATGTGGCTTCTCAA+AGG | 0.517229 | 1_1:-70303966 | Msa0040230:CDS |
| GCTCCATGTATTGGGGCAAA+GGG | 0.517436 | 1_1:-70305915 | Msa0040230:CDS |
| ATCTTGATGATGTTATGTTG+TGG | 0.524636 | 1_1:-70306143 | Msa0040230:CDS |
| AGGTTCCCAAGTGCAATACT+TGG | 0.527166 | 1_1:+70304260 | None:intergenic |
| AGGTTCCCAAGTGCAATACT+TGG | 0.527166 | 1_1:+70306101 | None:intergenic |
| CAAGTTGAGCAGATTTGTCC+CGG | 0.527345 | 1_1:+70305950 | None:intergenic |
| AGAAAATGTGGCTTCTCAAA+GGG | 0.537426 | 1_1:-70303965 | Msa0040230:CDS |
| AGCTCCAAGTATTGGGGCAA+AGG | 0.537498 | 1_1:-70304075 | Msa0040230:CDS |
| ATTTAAAGAGTTTCCATACC+TGG | 0.542410 | 1_1:-70304013 | Msa0040230:CDS |
| GCCTTCGCGATCGAGCAATC+GGG | 0.544699 | 1_1:-70304164 | Msa0040230:CDS |
| TGTGGCTTCTCAAAGGGTGT+TGG | 0.546349 | 1_1:-70303959 | Msa0040230:CDS |
| TGTGGCTTCTCAAAGGGTGT+TGG | 0.546349 | 1_1:-70305800 | Msa0040230:CDS |
| AGAAAATATCTGTTCATCAA+GGG | 0.554840 | 1_1:-70303904 | Msa0040230:CDS |
| TCCATACTTGGAGAGGCTTG+AGG | 0.557426 | 1_1:-70305842 | Msa0040230:CDS |
| GCTTGAGGCTCGAGTTGATG+TGG | 0.569120 | 1_1:-70305827 | Msa0040230:CDS |
| TCAAGTTGATGTAGAAAATG+TGG | 0.572167 | 1_1:-70303977 | Msa0040230:CDS |
| TGGAAAATGTGGCTTCTCAA+AGG | 0.572207 | 1_1:-70305807 | Msa0040230:CDS |
| AGGAGTTTCCATACTTGGAG+AGG | 0.574247 | 1_1:-70305849 | Msa0040230:CDS |
| AAGAGTTTCCATACCTGGAG+CGG | 0.585589 | 1_1:-70304008 | Msa0040230:CDS |
| CTATTCCAAATCAGATGCCA+AGG | 0.586783 | 1_1:-70306223 | Msa0040230:CDS |
| TCTTTGAGCTCCATGTATTG+GGG | 0.587210 | 1_1:-70305922 | Msa0040230:CDS |
| GGAAAATGTGGCTTCTCAAA+GGG | 0.588500 | 1_1:-70305806 | Msa0040230:CDS |
| AAGTGGCCAAGTATTGCACT+TGG | 0.595225 | 1_1:-70306107 | Msa0040230:CDS |
| CACACTTGTTGTCAAACAAG+TGG | 0.596019 | 1_1:-70304046 | Msa0040230:CDS |
| GGTGTGTTCGGATAGATGCC+GGG | 0.599178 | 1_1:-70305968 | Msa0040230:CDS |
| AAGTGGCCAAGTATTGCACT+TGG | 0.601796 | 1_1:-70304266 | Msa0040230:CDS |
| GTGGACTAGTGATGCAAAAG+TGG | 0.603948 | 1_1:-70306124 | Msa0040230:CDS |
| CACTTGTTTGACAACAAGTG+TGG | 0.622968 | 1_1:+70304047 | None:intergenic |
| CCTTATACAAACAAAGAAGA+CGG | 0.623002 | 1_1:-70304240 | Msa0040230:CDS |
| ACCCGATTGCTCGATCGCGA+AGG | 0.639229 | 1_1:+70304163 | None:intergenic |
| GCTATGAGCTCCAAGTATTG+GGG | 0.656803 | 1_1:-70304081 | Msa0040230:CDS |
| TCGAGTTGATGTGGAAAATG+TGG | 0.669414 | 1_1:-70305818 | Msa0040230:CDS |
| AGTGGCCAAGTATTGCACTT+GGG | 0.670287 | 1_1:-70304265 | Msa0040230:CDS |
| AGTGGCCAAGTATTGCACTT+GGG | 0.670287 | 1_1:-70306106 | Msa0040230:CDS |
| CACTATGGTTGTGAAACAAG+TGG | 0.680187 | 1_1:-70305887 | Msa0040230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAATCACTAAATTA+AGG | - | chr1_1:70305359-70305378 | Msa0040230:intron | 10.0% |
| !!! | TTTTAAAATCACTAAATTAA+GGG | - | chr1_1:70305360-70305379 | Msa0040230:intron | 10.0% |
| !!! | TTTTTAAAATCACTAAATTA+AGG | - | chr1_1:70305359-70305378 | Msa0040230:intron | 10.0% |
| !!! | TTTTAAAATCACTAAATTAA+GGG | - | chr1_1:70305360-70305379 | Msa0040230:intron | 10.0% |
| !! | CAAATAAGTGATTATATTTA+GGG | + | chr1_1:70304740-70304759 | None:intergenic | 15.0% |
| !! | TCAAATAAGTGATTATATTT+AGG | + | chr1_1:70304741-70304760 | None:intergenic | 15.0% |
| !! | TATATAGTAATTTGAAAAGA+GGG | + | chr1_1:70304777-70304796 | None:intergenic | 15.0% |
| !!! | CTTTGATTTTTTTTTTTTGA+CGG | + | chr1_1:70305656-70305675 | None:intergenic | 15.0% |
| !! | CAAATAAGTGATTATATTTA+GGG | + | chr1_1:70304740-70304759 | None:intergenic | 15.0% |
| !! | TCAAATAAGTGATTATATTT+AGG | + | chr1_1:70304741-70304760 | None:intergenic | 15.0% |
| !! | TATATAGTAATTTGAAAAGA+GGG | + | chr1_1:70304777-70304796 | None:intergenic | 15.0% |
| !!! | CTTTGATTTTTTTTTTTTGA+CGG | + | chr1_1:70305656-70305675 | None:intergenic | 15.0% |
| !! | AGAAAATATCTGTTCATTAA+GGG | - | chr1_1:70304344-70304363 | Msa0040230:CDS | 20.0% |
| !! | ATAGAAGTTTATTTGAAAAG+AGG | + | chr1_1:70304715-70304734 | None:intergenic | 20.0% |
| !! | ATATAGTAATTTGAAAAGAG+GGG | + | chr1_1:70304776-70304795 | None:intergenic | 20.0% |
| !! | GTATATAGTAATTTGAAAAG+AGG | + | chr1_1:70304778-70304797 | None:intergenic | 20.0% |
| !!! | TCACTTTTATTAAGAAAAGT+TGG | + | chr1_1:70304937-70304956 | None:intergenic | 20.0% |
| !! | AAGATGCTTATATAAAGATA+TGG | - | chr1_1:70304966-70304985 | Msa0040230:intron | 20.0% |
| !! | AATAGATTTATTCTAGTGAA+TGG | + | chr1_1:70305341-70305360 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGACGGATATT+TGG | + | chr1_1:70305648-70305667 | None:intergenic | 20.0% |
| !!! | TTTTTCTATCATGGTTTATT+TGG | + | chr1_1:70305679-70305698 | None:intergenic | 20.0% |
| !! | AGAAAATATCTGTTCATTAA+GGG | - | chr1_1:70304344-70304363 | Msa0040230:CDS | 20.0% |
| !! | ATAGAAGTTTATTTGAAAAG+AGG | + | chr1_1:70304715-70304734 | None:intergenic | 20.0% |
| !! | ATATAGTAATTTGAAAAGAG+GGG | + | chr1_1:70304776-70304795 | None:intergenic | 20.0% |
| !! | GTATATAGTAATTTGAAAAG+AGG | + | chr1_1:70304778-70304797 | None:intergenic | 20.0% |
| !!! | TCACTTTTATTAAGAAAAGT+TGG | + | chr1_1:70304937-70304956 | None:intergenic | 20.0% |
| !! | AAGATGCTTATATAAAGATA+TGG | - | chr1_1:70304966-70304985 | Msa0040230:intron | 20.0% |
| !! | AATAGATTTATTCTAGTGAA+TGG | + | chr1_1:70305341-70305360 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGACGGATATT+TGG | + | chr1_1:70305648-70305667 | None:intergenic | 20.0% |
| !!! | TTTTTCTATCATGGTTTATT+TGG | + | chr1_1:70305679-70305698 | None:intergenic | 20.0% |
| !!! | CCTTTTTCTTTGTTTGTATA+AGG | + | chr1_1:70304011-70304030 | None:intergenic | 25.0% |
| ! | CCTTATACAAACAAAGAAAA+AGG | - | chr1_1:70304008-70304027 | Msa0040230:CDS | 25.0% |
| ! | CAGAAAATATCTGTTCATTA+AGG | - | chr1_1:70304343-70304362 | Msa0040230:CDS | 25.0% |
| ! | GAAAATATCTGTTCATTAAG+GGG | - | chr1_1:70304345-70304364 | Msa0040230:CDS | 25.0% |
| !! | GACTTGATGATATTAATTAG+AGG | + | chr1_1:70304826-70304845 | None:intergenic | 25.0% |
| ! | ATTAATATCATCAAGTCTCT+TGG | - | chr1_1:70304829-70304848 | Msa0040230:intron | 25.0% |
| ! | TGAGAATAAATGTTGAACAA+AGG | + | chr1_1:70305116-70305135 | None:intergenic | 25.0% |
| !!! | CTTCACATATATTTCTAGTT+TGG | - | chr1_1:70305281-70305300 | Msa0040230:intron | 25.0% |
| ! | TGAGTTAATAAAATACGCAA+AGG | - | chr1_1:70305403-70305422 | Msa0040230:intron | 25.0% |
| ! | CGAAAATCATGAAAATTTGT+GGG | + | chr1_1:70305442-70305461 | None:intergenic | 25.0% |
| ! | ACGAAAATCATGAAAATTTG+TGG | + | chr1_1:70305443-70305462 | None:intergenic | 25.0% |
| !!! | TTGGAGATAATTTTAGAGTT+TGG | + | chr1_1:70305576-70305595 | None:intergenic | 25.0% |
| ! | AAGGATTGACTATAATTACT+AGG | + | chr1_1:70305612-70305631 | None:intergenic | 25.0% |
| ! | TAGTAATTATAGTCAATCCT+TGG | - | chr1_1:70305611-70305630 | Msa0040230:intron | 25.0% |
| !!! | TATCGATTTCTTTTTGTGTT+CGG | - | chr1_1:70305950-70305969 | Msa0040230:CDS | 25.0% |
| ! | AGAAAATATCTGTTCATCAA+GGG | - | chr1_1:70306185-70306204 | Msa0040230:CDS | 25.0% |
| !!! | CCTTTTTCTTTGTTTGTATA+AGG | + | chr1_1:70304011-70304030 | None:intergenic | 25.0% |
| ! | CCTTATACAAACAAAGAAAA+AGG | - | chr1_1:70304008-70304027 | Msa0040230:CDS | 25.0% |
| ! | CAGAAAATATCTGTTCATTA+AGG | - | chr1_1:70304343-70304362 | Msa0040230:CDS | 25.0% |
| ! | GAAAATATCTGTTCATTAAG+GGG | - | chr1_1:70304345-70304364 | Msa0040230:CDS | 25.0% |
| !! | GACTTGATGATATTAATTAG+AGG | + | chr1_1:70304826-70304845 | None:intergenic | 25.0% |
| ! | ATTAATATCATCAAGTCTCT+TGG | - | chr1_1:70304829-70304848 | Msa0040230:intron | 25.0% |
| ! | TGAGAATAAATGTTGAACAA+AGG | + | chr1_1:70305116-70305135 | None:intergenic | 25.0% |
| !!! | CTTCACATATATTTCTAGTT+TGG | - | chr1_1:70305281-70305300 | Msa0040230:intron | 25.0% |
| ! | TGAGTTAATAAAATACGCAA+AGG | - | chr1_1:70305403-70305422 | Msa0040230:intron | 25.0% |
| ! | CGAAAATCATGAAAATTTGT+GGG | + | chr1_1:70305442-70305461 | None:intergenic | 25.0% |
| ! | ACGAAAATCATGAAAATTTG+TGG | + | chr1_1:70305443-70305462 | None:intergenic | 25.0% |
| !!! | TTGGAGATAATTTTAGAGTT+TGG | + | chr1_1:70305576-70305595 | None:intergenic | 25.0% |
| ! | AAGGATTGACTATAATTACT+AGG | + | chr1_1:70305612-70305631 | None:intergenic | 25.0% |
| ! | TAGTAATTATAGTCAATCCT+TGG | - | chr1_1:70305611-70305630 | Msa0040230:intron | 25.0% |
| !!! | TATCGATTTCTTTTTGTGTT+CGG | - | chr1_1:70305950-70305969 | Msa0040230:CDS | 25.0% |
| ! | AGAAAATATCTGTTCATCAA+GGG | - | chr1_1:70306185-70306204 | Msa0040230:CDS | 25.0% |
| TCAAGATCAGAAAGACTAAT+TGG | + | chr1_1:70303933-70303952 | None:intergenic | 30.0% | |
| !! | ATCTTGATGATGTTATGTTG+TGG | - | chr1_1:70303946-70303965 | Msa0040230:CDS | 30.0% |
| ATTTAAGGAGTTTCCATACT+TGG | - | chr1_1:70304235-70304254 | Msa0040230:CDS | 30.0% | |
| TATTTGAAAAGAGGAGGTAA+GGG | + | chr1_1:70304706-70304725 | None:intergenic | 30.0% | |
| TTATTTGAAAAGAGGAGGTA+AGG | + | chr1_1:70304707-70304726 | None:intergenic | 30.0% | |
| GAAGTTTATTTGAAAAGAGG+AGG | + | chr1_1:70304712-70304731 | None:intergenic | 30.0% | |
| ATACATACTCCACAAACAAA+GGG | - | chr1_1:70304877-70304896 | Msa0040230:intron | 30.0% | |
| CATTTATTCTCATCAAGAGA+TGG | - | chr1_1:70305124-70305143 | Msa0040230:intron | 30.0% | |
| TTGGCTCAGAATTATTAACT+CGG | - | chr1_1:70305152-70305171 | Msa0040230:intron | 30.0% | |
| !!! | AATTTTAGAGTTTGGAGGAA+AGG | + | chr1_1:70305568-70305587 | None:intergenic | 30.0% |
| !!! | GAGATAATTTTAGAGTTTGG+AGG | + | chr1_1:70305573-70305592 | None:intergenic | 30.0% |
| !! | TTTAGCATCTGATTTGGAAT+AGG | + | chr1_1:70305709-70305728 | None:intergenic | 30.0% |
| TCAAGATCTGAAAGACTAAT+GGG | + | chr1_1:70305774-70305793 | None:intergenic | 30.0% | |
| ATCAAGATCTGAAAGACTAA+TGG | + | chr1_1:70305775-70305794 | None:intergenic | 30.0% | |
| !!! | TTCAGATCTTGATGATGTTT+TGG | - | chr1_1:70305782-70305801 | Msa0040230:CDS | 30.0% |
| CCTTATACAAACAAAGAAGA+CGG | - | chr1_1:70305849-70305868 | Msa0040230:CDS | 30.0% | |
| ATTTAAAGAGTTTCCATACC+TGG | - | chr1_1:70306076-70306095 | Msa0040230:CDS | 30.0% | |
| !! | TCAAGTTGATGTAGAAAATG+TGG | - | chr1_1:70306112-70306131 | Msa0040230:CDS | 30.0% |
| CAGAAAATATCTGTTCATCA+AGG | - | chr1_1:70306184-70306203 | Msa0040230:CDS | 30.0% | |
| TCAAGATCAGAAAGACTAAT+TGG | + | chr1_1:70303933-70303952 | None:intergenic | 30.0% | |
| !! | ATCTTGATGATGTTATGTTG+TGG | - | chr1_1:70303946-70303965 | Msa0040230:CDS | 30.0% |
| ATTTAAGGAGTTTCCATACT+TGG | - | chr1_1:70304235-70304254 | Msa0040230:CDS | 30.0% | |
| TATTTGAAAAGAGGAGGTAA+GGG | + | chr1_1:70304706-70304725 | None:intergenic | 30.0% | |
| TTATTTGAAAAGAGGAGGTA+AGG | + | chr1_1:70304707-70304726 | None:intergenic | 30.0% | |
| GAAGTTTATTTGAAAAGAGG+AGG | + | chr1_1:70304712-70304731 | None:intergenic | 30.0% | |
| ATACATACTCCACAAACAAA+GGG | - | chr1_1:70304877-70304896 | Msa0040230:intron | 30.0% | |
| CATTTATTCTCATCAAGAGA+TGG | - | chr1_1:70305124-70305143 | Msa0040230:intron | 30.0% | |
| TTGGCTCAGAATTATTAACT+CGG | - | chr1_1:70305152-70305171 | Msa0040230:intron | 30.0% | |
| !!! | AATTTTAGAGTTTGGAGGAA+AGG | + | chr1_1:70305568-70305587 | None:intergenic | 30.0% |
| !!! | GAGATAATTTTAGAGTTTGG+AGG | + | chr1_1:70305573-70305592 | None:intergenic | 30.0% |
| !! | TTTAGCATCTGATTTGGAAT+AGG | + | chr1_1:70305709-70305728 | None:intergenic | 30.0% |
| TCAAGATCTGAAAGACTAAT+GGG | + | chr1_1:70305774-70305793 | None:intergenic | 30.0% | |
| ATCAAGATCTGAAAGACTAA+TGG | + | chr1_1:70305775-70305794 | None:intergenic | 30.0% | |
| !!! | TTCAGATCTTGATGATGTTT+TGG | - | chr1_1:70305782-70305801 | Msa0040230:CDS | 30.0% |
| CCTTATACAAACAAAGAAGA+CGG | - | chr1_1:70305849-70305868 | Msa0040230:CDS | 30.0% | |
| ATTTAAAGAGTTTCCATACC+TGG | - | chr1_1:70306076-70306095 | Msa0040230:CDS | 30.0% | |
| !! | TCAAGTTGATGTAGAAAATG+TGG | - | chr1_1:70306112-70306131 | Msa0040230:CDS | 30.0% |
| CAGAAAATATCTGTTCATCA+AGG | - | chr1_1:70306184-70306203 | Msa0040230:CDS | 30.0% | |
| AACAACAGAATACTCTTCCT+TGG | + | chr1_1:70303886-70303905 | None:intergenic | 35.0% | |
| TAATTGGTCGAAGAGAGATT+TGG | + | chr1_1:70303917-70303936 | None:intergenic | 35.0% | |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | + | chr1_1:70304046-70304065 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | - | chr1_1:70304048-70304067 | Msa0040230:CDS | 35.0% | |
| ATTCTTTGAGCTCCATGTAT+TGG | - | chr1_1:70304165-70304184 | Msa0040230:CDS | 35.0% | |
| TTCTTTGAGCTCCATGTATT+GGG | - | chr1_1:70304166-70304185 | Msa0040230:CDS | 35.0% | |
| AAACATCTTCAGTACTAGTG+TGG | - | chr1_1:70304496-70304515 | Msa0040230:intron | 35.0% | |
| CATACATACTCCACAAACAA+AGG | - | chr1_1:70304876-70304895 | Msa0040230:intron | 35.0% | |
| TACATACTCCACAAACAAAG+GGG | - | chr1_1:70304878-70304897 | Msa0040230:intron | 35.0% | |
| ! | CTAAAATTCCCCTTTGTTTG+TGG | + | chr1_1:70304889-70304908 | None:intergenic | 35.0% |
| ! | CACAAACAAAGGGGAATTTT+AGG | - | chr1_1:70304887-70304906 | Msa0040230:intron | 35.0% |
| TTGGCAGTGTAGTTAATGTA+TGG | + | chr1_1:70304918-70304937 | None:intergenic | 35.0% | |
| ATTTGGTCCTTGTAGGTTAA+TGG | + | chr1_1:70305054-70305073 | None:intergenic | 35.0% | |
| !!! | GAAGTGGATTTGGTTTGTTT+TGG | + | chr1_1:70305082-70305101 | None:intergenic | 35.0% |
| ! | TGATTACTGTGAAGTGGATT+TGG | + | chr1_1:70305092-70305111 | None:intergenic | 35.0% |
| ! | AAAGGTTGATTACTGTGAAG+TGG | + | chr1_1:70305098-70305117 | None:intergenic | 35.0% |
| TCATCAAGAGATGGTAACTT+TGG | - | chr1_1:70305133-70305152 | Msa0040230:intron | 35.0% | |
| ACTAGTAAGAACTTCAGTCA+TGG | + | chr1_1:70305202-70305221 | None:intergenic | 35.0% | |
| ! | GTTCTTACTAGTTTGATGTC+TGG | - | chr1_1:70305210-70305229 | Msa0040230:intron | 35.0% |
| AATTTGTGGGACCATATTGA+TGG | + | chr1_1:70305429-70305448 | None:intergenic | 35.0% | |
| CCTATTCTTCACTTCATAGT+CGG | - | chr1_1:70305511-70305530 | Msa0040230:intron | 35.0% | |
| TTTGGAGGAAAGGAACTATA+TGG | + | chr1_1:70305558-70305577 | None:intergenic | 35.0% | |
| GTCAATCCTTGGATATATCA+AGG | - | chr1_1:70305622-70305641 | Msa0040230:intron | 35.0% | |
| !! | ATTTGGCCTTGATATATCCA+AGG | + | chr1_1:70305631-70305650 | None:intergenic | 35.0% |
| !!! | GGTAGCAGTTTTTTCTATCA+TGG | + | chr1_1:70305688-70305707 | None:intergenic | 35.0% |
| CTCTTCTTTAGCATCTGATT+TGG | + | chr1_1:70305715-70305734 | None:intergenic | 35.0% | |
| !! | TAATGGGTCGAAGAGATTTT+TGG | + | chr1_1:70305758-70305777 | None:intergenic | 35.0% |
| !!! | ATCTTGATGATGTTTTGGTG+TGG | - | chr1_1:70305787-70305806 | Msa0040230:CDS | 35.0% |
| ! | CCGTCTTCTTTGTTTGTATA+AGG | + | chr1_1:70305852-70305871 | None:intergenic | 35.0% |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | + | chr1_1:70304046-70304065 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | - | chr1_1:70304048-70304067 | Msa0040230:CDS | 35.0% | |
| TAGAAAATGTGGCTTCTCAA+AGG | - | chr1_1:70306123-70306142 | Msa0040230:CDS | 35.0% | |
| AGAAAATGTGGCTTCTCAAA+GGG | - | chr1_1:70306124-70306143 | Msa0040230:CDS | 35.0% | |
| CAAGGGAAAAAGTAGAGATA+TGG | - | chr1_1:70306202-70306221 | Msa0040230:CDS | 35.0% | |
| GTTATGTTCAGTATTCTCTC+AGG | - | chr1_1:70304383-70304402 | Msa0040230:CDS | 35.0% | |
| AACAACAGAATACTCTTCCT+TGG | + | chr1_1:70303886-70303905 | None:intergenic | 35.0% | |
| TAATTGGTCGAAGAGAGATT+TGG | + | chr1_1:70303917-70303936 | None:intergenic | 35.0% | |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | + | chr1_1:70304046-70304065 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | - | chr1_1:70304048-70304067 | Msa0040230:CDS | 35.0% | |
| ATTCTTTGAGCTCCATGTAT+TGG | - | chr1_1:70304165-70304184 | Msa0040230:CDS | 35.0% | |
| TTCTTTGAGCTCCATGTATT+GGG | - | chr1_1:70304166-70304185 | Msa0040230:CDS | 35.0% | |
| AAACATCTTCAGTACTAGTG+TGG | - | chr1_1:70304496-70304515 | Msa0040230:intron | 35.0% | |
| CATACATACTCCACAAACAA+AGG | - | chr1_1:70304876-70304895 | Msa0040230:intron | 35.0% | |
| TACATACTCCACAAACAAAG+GGG | - | chr1_1:70304878-70304897 | Msa0040230:intron | 35.0% | |
| ! | CTAAAATTCCCCTTTGTTTG+TGG | + | chr1_1:70304889-70304908 | None:intergenic | 35.0% |
| ! | CACAAACAAAGGGGAATTTT+AGG | - | chr1_1:70304887-70304906 | Msa0040230:intron | 35.0% |
| TTGGCAGTGTAGTTAATGTA+TGG | + | chr1_1:70304918-70304937 | None:intergenic | 35.0% | |
| ATTTGGTCCTTGTAGGTTAA+TGG | + | chr1_1:70305054-70305073 | None:intergenic | 35.0% | |
| !!! | GAAGTGGATTTGGTTTGTTT+TGG | + | chr1_1:70305082-70305101 | None:intergenic | 35.0% |
| ! | TGATTACTGTGAAGTGGATT+TGG | + | chr1_1:70305092-70305111 | None:intergenic | 35.0% |
| ! | AAAGGTTGATTACTGTGAAG+TGG | + | chr1_1:70305098-70305117 | None:intergenic | 35.0% |
| TCATCAAGAGATGGTAACTT+TGG | - | chr1_1:70305133-70305152 | Msa0040230:intron | 35.0% | |
| ACTAGTAAGAACTTCAGTCA+TGG | + | chr1_1:70305202-70305221 | None:intergenic | 35.0% | |
| ! | GTTCTTACTAGTTTGATGTC+TGG | - | chr1_1:70305210-70305229 | Msa0040230:intron | 35.0% |
| AATTTGTGGGACCATATTGA+TGG | + | chr1_1:70305429-70305448 | None:intergenic | 35.0% | |
| CCTATTCTTCACTTCATAGT+CGG | - | chr1_1:70305511-70305530 | Msa0040230:intron | 35.0% | |
| TTTGGAGGAAAGGAACTATA+TGG | + | chr1_1:70305558-70305577 | None:intergenic | 35.0% | |
| GTCAATCCTTGGATATATCA+AGG | - | chr1_1:70305622-70305641 | Msa0040230:intron | 35.0% | |
| !! | ATTTGGCCTTGATATATCCA+AGG | + | chr1_1:70305631-70305650 | None:intergenic | 35.0% |
| !!! | GGTAGCAGTTTTTTCTATCA+TGG | + | chr1_1:70305688-70305707 | None:intergenic | 35.0% |
| CTCTTCTTTAGCATCTGATT+TGG | + | chr1_1:70305715-70305734 | None:intergenic | 35.0% | |
| !! | TAATGGGTCGAAGAGATTTT+TGG | + | chr1_1:70305758-70305777 | None:intergenic | 35.0% |
| !!! | ATCTTGATGATGTTTTGGTG+TGG | - | chr1_1:70305787-70305806 | Msa0040230:CDS | 35.0% |
| ! | CCGTCTTCTTTGTTTGTATA+AGG | + | chr1_1:70305852-70305871 | None:intergenic | 35.0% |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | + | chr1_1:70304046-70304065 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | - | chr1_1:70304048-70304067 | Msa0040230:CDS | 35.0% | |
| TAGAAAATGTGGCTTCTCAA+AGG | - | chr1_1:70306123-70306142 | Msa0040230:CDS | 35.0% | |
| AGAAAATGTGGCTTCTCAAA+GGG | - | chr1_1:70306124-70306143 | Msa0040230:CDS | 35.0% | |
| CAAGGGAAAAAGTAGAGATA+TGG | - | chr1_1:70306202-70306221 | Msa0040230:CDS | 35.0% | |
| GTTATGTTCAGTATTCTCTC+AGG | - | chr1_1:70304383-70304402 | Msa0040230:CDS | 35.0% | |
| !! | CTTGGCATCTGATTTGGAAT+AGG | + | chr1_1:70303868-70303887 | None:intergenic | 40.0% |
| CTATTCCAAATCAGATGCCA+AGG | - | chr1_1:70303866-70303885 | Msa0040230:CDS | 40.0% | |
| TCTTTGAGCTCCATGTATTG+GGG | - | chr1_1:70304167-70304186 | Msa0040230:CDS | 40.0% | |
| CACTTGTTTCACAACCATAG+TGG | + | chr1_1:70304204-70304223 | None:intergenic | 40.0% | |
| CACTATGGTTGTGAAACAAG+TGG | - | chr1_1:70304202-70304221 | Msa0040230:CDS | 40.0% | |
| AGTGGTTGAAGCTGCATTTA+AGG | - | chr1_1:70304220-70304239 | Msa0040230:CDS | 40.0% | |
| !! | TCGAGTTGATGTGGAAAATG+TGG | - | chr1_1:70304271-70304290 | Msa0040230:CDS | 40.0% |
| TGGAAAATGTGGCTTCTCAA+AGG | - | chr1_1:70304282-70304301 | Msa0040230:CDS | 40.0% | |
| GGAAAATGTGGCTTCTCAAA+GGG | - | chr1_1:70304283-70304302 | Msa0040230:CDS | 40.0% | |
| GCAATCTCCATTAACCTACA+AGG | - | chr1_1:70305044-70305063 | Msa0040230:intron | 40.0% | |
| !!! | GGTTTGTTTTGGCTGCTATT+TGG | + | chr1_1:70305071-70305090 | None:intergenic | 40.0% |
| ATACGCAAAGGCCATCAATA+TGG | - | chr1_1:70305415-70305434 | Msa0040230:intron | 40.0% | |
| CCGACTATGAAGTGAAGAAT+AGG | + | chr1_1:70305514-70305533 | None:intergenic | 40.0% | |
| ACTAGGTAGATCTTGTTGCT+TGG | + | chr1_1:70305595-70305614 | None:intergenic | 40.0% | |
| GTGGACAAGTGATGAAAAAG+TGG | - | chr1_1:70305806-70305825 | Msa0040230:CDS | 40.0% | |
| ! | TTTTGTGTTCGGATAGATGC+AGG | - | chr1_1:70305961-70305980 | Msa0040230:CDS | 40.0% |
| AGGAACAAATCTGCTGAACT+TGG | - | chr1_1:70305981-70306000 | Msa0040230:intron | 40.0% | |
| ATGCTATGAGCTCCAAGTAT+TGG | - | chr1_1:70306006-70306025 | Msa0040230:intron | 40.0% | |
| TGCTATGAGCTCCAAGTATT+GGG | - | chr1_1:70306007-70306026 | Msa0040230:intron | 40.0% | |
| AATACCTTTGCCCCAATACT+TGG | + | chr1_1:70306021-70306040 | None:intergenic | 40.0% | |
| CACTTGTTTGACAACAAGTG+TGG | + | chr1_1:70306045-70306064 | None:intergenic | 40.0% | |
| !! | CACACTTGTTGTCAAACAAG+TGG | - | chr1_1:70306043-70306062 | Msa0040230:CDS | 40.0% |
| !! | CTTGGCATCTGATTTGGAAT+AGG | + | chr1_1:70303868-70303887 | None:intergenic | 40.0% |
| CTATTCCAAATCAGATGCCA+AGG | - | chr1_1:70303866-70303885 | Msa0040230:CDS | 40.0% | |
| TCTTTGAGCTCCATGTATTG+GGG | - | chr1_1:70304167-70304186 | Msa0040230:CDS | 40.0% | |
| CACTTGTTTCACAACCATAG+TGG | + | chr1_1:70304204-70304223 | None:intergenic | 40.0% | |
| CACTATGGTTGTGAAACAAG+TGG | - | chr1_1:70304202-70304221 | Msa0040230:CDS | 40.0% | |
| AGTGGTTGAAGCTGCATTTA+AGG | - | chr1_1:70304220-70304239 | Msa0040230:CDS | 40.0% | |
| !! | TCGAGTTGATGTGGAAAATG+TGG | - | chr1_1:70304271-70304290 | Msa0040230:CDS | 40.0% |
| TGGAAAATGTGGCTTCTCAA+AGG | - | chr1_1:70304282-70304301 | Msa0040230:CDS | 40.0% | |
| GGAAAATGTGGCTTCTCAAA+GGG | - | chr1_1:70304283-70304302 | Msa0040230:CDS | 40.0% | |
| GCAATCTCCATTAACCTACA+AGG | - | chr1_1:70305044-70305063 | Msa0040230:intron | 40.0% | |
| !!! | GGTTTGTTTTGGCTGCTATT+TGG | + | chr1_1:70305071-70305090 | None:intergenic | 40.0% |
| ATACGCAAAGGCCATCAATA+TGG | - | chr1_1:70305415-70305434 | Msa0040230:intron | 40.0% | |
| CCGACTATGAAGTGAAGAAT+AGG | + | chr1_1:70305514-70305533 | None:intergenic | 40.0% | |
| ACTAGGTAGATCTTGTTGCT+TGG | + | chr1_1:70305595-70305614 | None:intergenic | 40.0% | |
| GTGGACAAGTGATGAAAAAG+TGG | - | chr1_1:70305806-70305825 | Msa0040230:CDS | 40.0% | |
| ! | TTTTGTGTTCGGATAGATGC+AGG | - | chr1_1:70305961-70305980 | Msa0040230:CDS | 40.0% |
| AGGAACAAATCTGCTGAACT+TGG | - | chr1_1:70305981-70306000 | Msa0040230:intron | 40.0% | |
| ATGCTATGAGCTCCAAGTAT+TGG | - | chr1_1:70306006-70306025 | Msa0040230:intron | 40.0% | |
| TGCTATGAGCTCCAAGTATT+GGG | - | chr1_1:70306007-70306026 | Msa0040230:intron | 40.0% | |
| AATACCTTTGCCCCAATACT+TGG | + | chr1_1:70306021-70306040 | None:intergenic | 40.0% | |
| CACTTGTTTGACAACAAGTG+TGG | + | chr1_1:70306045-70306064 | None:intergenic | 40.0% | |
| !! | CACACTTGTTGTCAAACAAG+TGG | - | chr1_1:70306043-70306062 | Msa0040230:CDS | 40.0% |
| CTCTTCCTTGGCATCTGATT+TGG | + | chr1_1:70303874-70303893 | None:intergenic | 45.0% | |
| !! | GTGGACTAGTGATGCAAAAG+TGG | - | chr1_1:70303965-70303984 | Msa0040230:CDS | 45.0% |
| ! | AAGTGGCCAAGTATTGCACT+TGG | - | chr1_1:70303982-70304001 | Msa0040230:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | - | chr1_1:70303983-70304002 | Msa0040230:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | + | chr1_1:70303991-70304010 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGCAGATTTGTCC+CGG | + | chr1_1:70304142-70304161 | None:intergenic | 45.0% |
| AATCCCTTTGCCCCAATACA+TGG | + | chr1_1:70304180-70304199 | None:intergenic | 45.0% | |
| AGGAGTTTCCATACTTGGAG+AGG | - | chr1_1:70304240-70304259 | Msa0040230:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | - | chr1_1:70304295-70304314 | Msa0040230:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTGAA+AGG | - | chr1_1:70304309-70304328 | Msa0040230:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTGAAA+GGG | - | chr1_1:70304310-70304329 | Msa0040230:CDS | 45.0% |
| !!! | AAGGCTGGTTTTGAAAGGGA+AGG | - | chr1_1:70304314-70304333 | Msa0040230:CDS | 45.0% |
| TGAAAAGAGGAGGTAAGGGA+AGG | + | chr1_1:70304702-70304721 | None:intergenic | 45.0% | |
| !! | GGAGATTGCTCTGAAGATGT+TGG | + | chr1_1:70305033-70305052 | None:intergenic | 45.0% |
| CACTTCATAGTCGGTCATAG+TGG | - | chr1_1:70305520-70305539 | Msa0040230:intron | 45.0% | |
| ! | AAGTGGCCAAGTATTGCACT+TGG | - | chr1_1:70303982-70304001 | Msa0040230:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | - | chr1_1:70303983-70304002 | Msa0040230:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | + | chr1_1:70303991-70304010 | None:intergenic | 45.0% | |
| ! | GCTATGAGCTCCAAGTATTG+GGG | - | chr1_1:70306008-70306027 | Msa0040230:intron | 45.0% |
| AAGAGTTTCCATACCTGGAG+CGG | - | chr1_1:70306081-70306100 | Msa0040230:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | - | chr1_1:70304295-70304314 | Msa0040230:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTCAA+AGG | - | chr1_1:70306150-70306169 | Msa0040230:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTCAAA+GGG | - | chr1_1:70306151-70306170 | Msa0040230:CDS | 45.0% |
| !!! | AAGGCTGGTTTTCAAAGGGA+GGG | - | chr1_1:70306155-70306174 | Msa0040230:CDS | 45.0% |
| CTCTTCCTTGGCATCTGATT+TGG | + | chr1_1:70303874-70303893 | None:intergenic | 45.0% | |
| !! | GTGGACTAGTGATGCAAAAG+TGG | - | chr1_1:70303965-70303984 | Msa0040230:CDS | 45.0% |
| ! | AAGTGGCCAAGTATTGCACT+TGG | - | chr1_1:70303982-70304001 | Msa0040230:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | - | chr1_1:70303983-70304002 | Msa0040230:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | + | chr1_1:70303991-70304010 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGCAGATTTGTCC+CGG | + | chr1_1:70304142-70304161 | None:intergenic | 45.0% |
| AATCCCTTTGCCCCAATACA+TGG | + | chr1_1:70304180-70304199 | None:intergenic | 45.0% | |
| AGGAGTTTCCATACTTGGAG+AGG | - | chr1_1:70304240-70304259 | Msa0040230:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | - | chr1_1:70304295-70304314 | Msa0040230:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTGAA+AGG | - | chr1_1:70304309-70304328 | Msa0040230:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTGAAA+GGG | - | chr1_1:70304310-70304329 | Msa0040230:CDS | 45.0% |
| !!! | AAGGCTGGTTTTGAAAGGGA+AGG | - | chr1_1:70304314-70304333 | Msa0040230:CDS | 45.0% |
| TGAAAAGAGGAGGTAAGGGA+AGG | + | chr1_1:70304702-70304721 | None:intergenic | 45.0% | |
| !! | GGAGATTGCTCTGAAGATGT+TGG | + | chr1_1:70305033-70305052 | None:intergenic | 45.0% |
| CACTTCATAGTCGGTCATAG+TGG | - | chr1_1:70305520-70305539 | Msa0040230:intron | 45.0% | |
| ! | AAGTGGCCAAGTATTGCACT+TGG | - | chr1_1:70303982-70304001 | Msa0040230:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | - | chr1_1:70303983-70304002 | Msa0040230:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | + | chr1_1:70303991-70304010 | None:intergenic | 45.0% | |
| ! | GCTATGAGCTCCAAGTATTG+GGG | - | chr1_1:70306008-70306027 | Msa0040230:intron | 45.0% |
| AAGAGTTTCCATACCTGGAG+CGG | - | chr1_1:70306081-70306100 | Msa0040230:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | - | chr1_1:70304295-70304314 | Msa0040230:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTCAA+AGG | - | chr1_1:70306150-70306169 | Msa0040230:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTCAAA+GGG | - | chr1_1:70306151-70306170 | Msa0040230:CDS | 45.0% |
| !!! | AAGGCTGGTTTTCAAAGGGA+GGG | - | chr1_1:70306155-70306174 | Msa0040230:CDS | 45.0% |
| AATTGGGTGTACCGAGTTCC+AGG | - | chr1_1:70304100-70304119 | Msa0040230:CDS | 50.0% | |
| TACCGAGTTCCAGGTGTGTT+CGG | - | chr1_1:70304109-70304128 | Msa0040230:CDS | 50.0% | |
| ATCCGAACACACCTGGAACT+CGG | + | chr1_1:70304114-70304133 | None:intergenic | 50.0% | |
| AGGTGTGTTCGGATAGATGC+CGG | - | chr1_1:70304120-70304139 | Msa0040230:CDS | 50.0% | |
| CGGGACAAATCTGCTCAACT+TGG | - | chr1_1:70304140-70304159 | Msa0040230:CDS | 50.0% | |
| AGCTCCATGTATTGGGGCAA+AGG | - | chr1_1:70304173-70304192 | Msa0040230:CDS | 50.0% | |
| GCTCCATGTATTGGGGCAAA+GGG | - | chr1_1:70304174-70304193 | Msa0040230:CDS | 50.0% | |
| TCCATACTTGGAGAGGCTTG+AGG | - | chr1_1:70304247-70304266 | Msa0040230:CDS | 50.0% | |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | - | chr1_1:70304289-70304308 | Msa0040230:CDS | 50.0% |
| ! | GGCTGCTATTTGGTCCTTGT+AGG | + | chr1_1:70305061-70305080 | None:intergenic | 50.0% |
| !! | AGCTCCAAGTATTGGGGCAA+AGG | - | chr1_1:70306014-70306033 | Msa0040230:intron | 50.0% |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | - | chr1_1:70304289-70304308 | Msa0040230:CDS | 50.0% |
| !!! | GAAGGCTGGTTTTCAAAGGG+AGG | - | chr1_1:70306154-70306173 | Msa0040230:CDS | 50.0% |
| AATTGGGTGTACCGAGTTCC+AGG | - | chr1_1:70304100-70304119 | Msa0040230:CDS | 50.0% | |
| TACCGAGTTCCAGGTGTGTT+CGG | - | chr1_1:70304109-70304128 | Msa0040230:CDS | 50.0% | |
| ATCCGAACACACCTGGAACT+CGG | + | chr1_1:70304114-70304133 | None:intergenic | 50.0% | |
| AGGTGTGTTCGGATAGATGC+CGG | - | chr1_1:70304120-70304139 | Msa0040230:CDS | 50.0% | |
| CGGGACAAATCTGCTCAACT+TGG | - | chr1_1:70304140-70304159 | Msa0040230:CDS | 50.0% | |
| AGCTCCATGTATTGGGGCAA+AGG | - | chr1_1:70304173-70304192 | Msa0040230:CDS | 50.0% | |
| GCTCCATGTATTGGGGCAAA+GGG | - | chr1_1:70304174-70304193 | Msa0040230:CDS | 50.0% | |
| TCCATACTTGGAGAGGCTTG+AGG | - | chr1_1:70304247-70304266 | Msa0040230:CDS | 50.0% | |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | - | chr1_1:70304289-70304308 | Msa0040230:CDS | 50.0% |
| ! | GGCTGCTATTTGGTCCTTGT+AGG | + | chr1_1:70305061-70305080 | None:intergenic | 50.0% |
| !! | AGCTCCAAGTATTGGGGCAA+AGG | - | chr1_1:70306014-70306033 | Msa0040230:intron | 50.0% |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | - | chr1_1:70304289-70304308 | Msa0040230:CDS | 50.0% |
| !!! | GAAGGCTGGTTTTCAAAGGG+AGG | - | chr1_1:70306154-70306173 | Msa0040230:CDS | 50.0% |
| TGCCTTCGCGATCGAGCAAT+TGG | - | chr1_1:70304083-70304102 | Msa0040230:CDS | 55.0% | |
| GCCTTCGCGATCGAGCAATT+GGG | - | chr1_1:70304084-70304103 | Msa0040230:CDS | 55.0% | |
| ACCCAATTGCTCGATCGCGA+AGG | + | chr1_1:70304088-70304107 | None:intergenic | 55.0% | |
| GGCATCTATCCGAACACACC+TGG | + | chr1_1:70304121-70304140 | None:intergenic | 55.0% | |
| GGTGTGTTCGGATAGATGCC+GGG | - | chr1_1:70304121-70304140 | Msa0040230:CDS | 55.0% | |
| GGGCAAAGGGATTGCCACTA+TGG | - | chr1_1:70304187-70304206 | Msa0040230:CDS | 55.0% | |
| GCCTCAAGCCTCTCCAAGTA+TGG | + | chr1_1:70304251-70304270 | None:intergenic | 55.0% | |
| !! | GCTTGAGGCTCGAGTTGATG+TGG | - | chr1_1:70304262-70304281 | Msa0040230:CDS | 55.0% |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | - | chr1_1:70304299-70304318 | Msa0040230:CDS | 55.0% |
| TGCCTTCGCGATCGAGCAAT+CGG | - | chr1_1:70304083-70304102 | Msa0040230:CDS | 55.0% | |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | - | chr1_1:70304299-70304318 | Msa0040230:CDS | 55.0% |
| TGCCTTCGCGATCGAGCAAT+TGG | - | chr1_1:70304083-70304102 | Msa0040230:CDS | 55.0% | |
| GCCTTCGCGATCGAGCAATT+GGG | - | chr1_1:70304084-70304103 | Msa0040230:CDS | 55.0% | |
| ACCCAATTGCTCGATCGCGA+AGG | + | chr1_1:70304088-70304107 | None:intergenic | 55.0% | |
| GGCATCTATCCGAACACACC+TGG | + | chr1_1:70304121-70304140 | None:intergenic | 55.0% | |
| GGTGTGTTCGGATAGATGCC+GGG | - | chr1_1:70304121-70304140 | Msa0040230:CDS | 55.0% | |
| GGGCAAAGGGATTGCCACTA+TGG | - | chr1_1:70304187-70304206 | Msa0040230:CDS | 55.0% | |
| GCCTCAAGCCTCTCCAAGTA+TGG | + | chr1_1:70304251-70304270 | None:intergenic | 55.0% | |
| !! | GCTTGAGGCTCGAGTTGATG+TGG | - | chr1_1:70304262-70304281 | Msa0040230:CDS | 55.0% |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | - | chr1_1:70304299-70304318 | Msa0040230:CDS | 55.0% |
| TGCCTTCGCGATCGAGCAAT+CGG | - | chr1_1:70304083-70304102 | Msa0040230:CDS | 55.0% | |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | - | chr1_1:70304299-70304318 | Msa0040230:CDS | 55.0% |
| GCCTTCGCGATCGAGCAATC+GGG | - | chr1_1:70305925-70305944 | Msa0040230:CDS | 60.0% | |
| ACCCGATTGCTCGATCGCGA+AGG | + | chr1_1:70305929-70305948 | None:intergenic | 60.0% | |
| GCTTCAAGCCGCTCCAGGTA+TGG | + | chr1_1:70306092-70306111 | None:intergenic | 60.0% | |
| CTTGAGCTTCAAGCCGCTCC+AGG | + | chr1_1:70306097-70306116 | None:intergenic | 60.0% | |
| GCCTTCGCGATCGAGCAATC+GGG | - | chr1_1:70305925-70305944 | Msa0040230:CDS | 60.0% | |
| ACCCGATTGCTCGATCGCGA+AGG | + | chr1_1:70305929-70305948 | None:intergenic | 60.0% | |
| GCTTCAAGCCGCTCCAGGTA+TGG | + | chr1_1:70306092-70306111 | None:intergenic | 60.0% | |
| CTTGAGCTTCAAGCCGCTCC+AGG | + | chr1_1:70306097-70306116 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70303849 | 70306262 | 70303849 | ID=Msa0040230;Name=Msa0040230 |
| chr1_1 | mRNA | 70303849 | 70306262 | 70303849 | ID=Msa0040230-mRNA-1;Parent=Msa0040230;Name=Msa0040230-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0|0|4|0|336 |
| chr1_1 | exon | 70306042 | 70306262 | 70306042 | ID=Msa0040230-mRNA-1:exon:23183;Parent=Msa0040230-mRNA-1 |
| chr1_1 | exon | 70306006 | 70306012 | 70306006 | ID=Msa0040230-mRNA-1:exon:23182;Parent=Msa0040230-mRNA-1 |
| chr1_1 | exon | 70305776 | 70305989 | 70305776 | ID=Msa0040230-mRNA-1:exon:23181;Parent=Msa0040230-mRNA-1 |
| chr1_1 | exon | 70303849 | 70304417 | 70303849 | ID=Msa0040230-mRNA-1:exon:23180;Parent=Msa0040230-mRNA-1 |
| chr1_1 | CDS | 70306042 | 70306262 | 70306042 | ID=Msa0040230-mRNA-1:cds;Parent=Msa0040230-mRNA-1 |
| chr1_1 | CDS | 70306006 | 70306012 | 70306006 | ID=Msa0040230-mRNA-1:cds;Parent=Msa0040230-mRNA-1 |
| chr1_1 | CDS | 70305776 | 70305989 | 70305776 | ID=Msa0040230-mRNA-1:cds;Parent=Msa0040230-mRNA-1 |
| chr1_1 | CDS | 70303849 | 70304417 | 70303849 | ID=Msa0040230-mRNA-1:cds;Parent=Msa0040230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
