Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040250 | RHN81984.1 | 92.500 | 40 | 3 | 0 | 30 | 69 | 186 | 225 | 1.17e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0040250 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040250 | MtrunA17_Chr1g0205001 | 92.500 | 40 | 3 | 0 | 30 | 69 | 186 | 225 | 1.08e-21 | 85.9 |
| Msa0040250 | MtrunA17_Chr1g0205031 | 76.471 | 34 | 8 | 0 | 31 | 64 | 419 | 452 | 2.30e-12 | 62.4 |
| Msa0040250 | MtrunA17_Chr5g0394661 | 70.968 | 31 | 9 | 0 | 31 | 61 | 502 | 532 | 7.06e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACAAGCTCTTTGGTTT+TGG | 0.211080 | 1_1:+70326807 | None:intergenic |
| AGAACTGAATCTTCATTAAT+AGG | 0.233906 | 1_1:+70327788 | None:intergenic |
| GGCTTTCCGATTGATGAATA+AGG | 0.277084 | 1_1:+70326860 | None:intergenic |
| ATTTGATTCCACAAGCTCTT+TGG | 0.335151 | 1_1:+70326801 | None:intergenic |
| CCATTACCTTATTCATCAAT+CGG | 0.402551 | 1_1:-70326866 | Msa0040250:CDS |
| TGTTGTGAGTGCTTTGCCGC+TGG | 0.450078 | 1_1:-70327857 | Msa0040250:CDS |
| CTTGTGGAATCAAATGCTAT+TGG | 0.456145 | 1_1:-70326793 | Msa0040250:CDS |
| CCGATTGATGAATAAGGTAA+TGG | 0.456999 | 1_1:+70326866 | None:intergenic |
| GCCGCTGGAGTCTACTGTAC+AGG | 0.525113 | 1_1:-70327842 | Msa0040250:CDS |
| GAAGATTCAGTTCTGAAAGC+TGG | 0.550155 | 1_1:-70327779 | Msa0040250:CDS |
| ATTCAGTTCTGAAAGCTGGC+AGG | 0.556614 | 1_1:-70327775 | Msa0040250:CDS |
| GAATAAGGTAATGGAAGCAA+TGG | 0.561489 | 1_1:+70326875 | None:intergenic |
| ATCCAAAACCAAAGAGCTTG+TGG | 0.570201 | 1_1:-70326809 | Msa0040250:CDS |
| TCCTGTACAGTAGACTCCAG+CGG | 0.695681 | 1_1:+70327841 | None:intergenic |
| CAAAGCACTCACAACAACTG+AGG | 0.698243 | 1_1:+70327864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATATTTAGGATTACAAT+TGG | + | chr1_1:70327188-70327207 | None:intergenic | 20.0% |
| !! | TCAACTTCAATTTCATATTT+AGG | + | chr1_1:70327199-70327218 | None:intergenic | 20.0% |
| !!! | TTCATATTTAGGATTACAAT+TGG | + | chr1_1:70327188-70327207 | None:intergenic | 20.0% |
| !! | TCAACTTCAATTTCATATTT+AGG | + | chr1_1:70327199-70327218 | None:intergenic | 20.0% |
| !! | ATGTAAGCTTGACAAAATTT+TGG | - | chr1_1:70326823-70326842 | Msa0040250:CDS | 25.0% |
| !! | TGTAAGCTTGACAAAATTTT+GGG | - | chr1_1:70326824-70326843 | Msa0040250:CDS | 25.0% |
| ! | TGCAAAAGAGTAAAAAAAGA+AGG | + | chr1_1:70326870-70326889 | None:intergenic | 25.0% |
| ! | AGAACTGAATCTTCATTAAT+AGG | + | chr1_1:70326979-70326998 | None:intergenic | 25.0% |
| !! | TTACAATAGTAATGCTACTT+AGG | - | chr1_1:70327284-70327303 | Msa0040250:intron | 25.0% |
| ! | AATTTAAATTCAAGCATGCA+TGG | + | chr1_1:70327342-70327361 | None:intergenic | 25.0% |
| ! | GTTGTGATTATATGAAAAAG+CGG | + | chr1_1:70327695-70327714 | None:intergenic | 25.0% |
| !! | TTTTTCATATAATCACAACC+AGG | - | chr1_1:70327696-70327715 | Msa0040250:intron | 25.0% |
| ! | ACACTTAACATTTACAACTT+GGG | + | chr1_1:70327765-70327784 | None:intergenic | 25.0% |
| !! | AATTAAGCACAAGATCTTTT+CGG | + | chr1_1:70327928-70327947 | None:intergenic | 25.0% |
| !!! | AGATCTTGTGCTTAATTTTT+TGG | - | chr1_1:70327931-70327950 | Msa0040250:intron | 25.0% |
| !! | ATGTAAGCTTGACAAAATTT+TGG | - | chr1_1:70326823-70326842 | Msa0040250:CDS | 25.0% |
| !! | TGTAAGCTTGACAAAATTTT+GGG | - | chr1_1:70326824-70326843 | Msa0040250:CDS | 25.0% |
| ! | TGCAAAAGAGTAAAAAAAGA+AGG | + | chr1_1:70326870-70326889 | None:intergenic | 25.0% |
| ! | AGAACTGAATCTTCATTAAT+AGG | + | chr1_1:70326979-70326998 | None:intergenic | 25.0% |
| !! | TTACAATAGTAATGCTACTT+AGG | - | chr1_1:70327284-70327303 | Msa0040250:intron | 25.0% |
| ! | AATTTAAATTCAAGCATGCA+TGG | + | chr1_1:70327342-70327361 | None:intergenic | 25.0% |
| ! | GTTGTGATTATATGAAAAAG+CGG | + | chr1_1:70327695-70327714 | None:intergenic | 25.0% |
| !! | TTTTTCATATAATCACAACC+AGG | - | chr1_1:70327696-70327715 | Msa0040250:intron | 25.0% |
| ! | ACACTTAACATTTACAACTT+GGG | + | chr1_1:70327765-70327784 | None:intergenic | 25.0% |
| !! | AATTAAGCACAAGATCTTTT+CGG | + | chr1_1:70327928-70327947 | None:intergenic | 25.0% |
| !!! | AGATCTTGTGCTTAATTTTT+TGG | - | chr1_1:70327931-70327950 | Msa0040250:intron | 25.0% |
| !! | AATAACACAAGTATTGATGC+TGG | + | chr1_1:70327152-70327171 | None:intergenic | 30.0% |
| TAACCACAATGGATAATGAT+CGG | - | chr1_1:70327402-70327421 | Msa0040250:intron | 30.0% | |
| AGCAAAATTAGATAGAGCTA+TGG | + | chr1_1:70327491-70327510 | None:intergenic | 30.0% | |
| CACTTAACATTTACAACTTG+GGG | + | chr1_1:70327764-70327783 | None:intergenic | 30.0% | |
| CACACTTAACATTTACAACT+TGG | + | chr1_1:70327766-70327785 | None:intergenic | 30.0% | |
| TAAGTGTGCGAAAATATACA+TGG | - | chr1_1:70327778-70327797 | Msa0040250:CDS | 30.0% | |
| CCATTACCTTATTCATCAAT+CGG | - | chr1_1:70327898-70327917 | Msa0040250:CDS | 30.0% | |
| !! | AATAACACAAGTATTGATGC+TGG | + | chr1_1:70327152-70327171 | None:intergenic | 30.0% |
| TAACCACAATGGATAATGAT+CGG | - | chr1_1:70327402-70327421 | Msa0040250:intron | 30.0% | |
| AGCAAAATTAGATAGAGCTA+TGG | + | chr1_1:70327491-70327510 | None:intergenic | 30.0% | |
| CACTTAACATTTACAACTTG+GGG | + | chr1_1:70327764-70327783 | None:intergenic | 30.0% | |
| CACACTTAACATTTACAACT+TGG | + | chr1_1:70327766-70327785 | None:intergenic | 30.0% | |
| TAAGTGTGCGAAAATATACA+TGG | - | chr1_1:70327778-70327797 | Msa0040250:CDS | 30.0% | |
| CCATTACCTTATTCATCAAT+CGG | - | chr1_1:70327898-70327917 | Msa0040250:CDS | 30.0% | |
| ! | ATTTCCCTAGATCTTGGTTT+TGG | + | chr1_1:70327051-70327070 | None:intergenic | 35.0% |
| ! | CATTTGATTTCCCTAGATCT+TGG | + | chr1_1:70327057-70327076 | None:intergenic | 35.0% |
| CTAGGGAAATCAAATGCTAT+TGG | - | chr1_1:70327061-70327080 | Msa0040250:intron | 35.0% | |
| TTATCTCCTAGTTACAGTGA+TGG | - | chr1_1:70327220-70327239 | Msa0040250:intron | 35.0% | |
| TAAATTCAAGCATGCATGGT+TGG | + | chr1_1:70327338-70327357 | None:intergenic | 35.0% | |
| GAACAGATCATAGCTCAAAT+TGG | + | chr1_1:70327376-70327395 | None:intergenic | 35.0% | |
| ATTTGAGCTATGATCTGTTC+AGG | - | chr1_1:70327376-70327395 | Msa0040250:intron | 35.0% | |
| GTCAACTATTTCCTAATGCT+CGG | + | chr1_1:70327453-70327472 | None:intergenic | 35.0% | |
| ! | ATTCCATATGATGGAGAGAT+TGG | - | chr1_1:70327580-70327599 | Msa0040250:intron | 35.0% |
| CATTTGTAACAACATGCATG+AGG | + | chr1_1:70327661-70327680 | None:intergenic | 35.0% | |
| TCATATAATCACAACCAGGT+CGG | - | chr1_1:70327700-70327719 | Msa0040250:intron | 35.0% | |
| TGTGCGAAAATATACATGGT+AGG | - | chr1_1:70327782-70327801 | Msa0040250:CDS | 35.0% | |
| CGAAAATATACATGGTAGGA+AGG | - | chr1_1:70327786-70327805 | Msa0040250:CDS | 35.0% | |
| !! | GAATAAGGTAATGGAAGCAA+TGG | + | chr1_1:70327892-70327911 | None:intergenic | 35.0% |
| CCGATTGATGAATAAGGTAA+TGG | + | chr1_1:70327901-70327920 | None:intergenic | 35.0% | |
| ATTTGATTCCACAAGCTCTT+TGG | + | chr1_1:70327966-70327985 | None:intergenic | 35.0% | |
| CTTGTGGAATCAAATGCTAT+TGG | - | chr1_1:70327971-70327990 | Msa0040250:CDS | 35.0% | |
| ! | ATTTCCCTAGATCTTGGTTT+TGG | + | chr1_1:70327051-70327070 | None:intergenic | 35.0% |
| ! | CATTTGATTTCCCTAGATCT+TGG | + | chr1_1:70327057-70327076 | None:intergenic | 35.0% |
| CTAGGGAAATCAAATGCTAT+TGG | - | chr1_1:70327061-70327080 | Msa0040250:intron | 35.0% | |
| TTATCTCCTAGTTACAGTGA+TGG | - | chr1_1:70327220-70327239 | Msa0040250:intron | 35.0% | |
| TAAATTCAAGCATGCATGGT+TGG | + | chr1_1:70327338-70327357 | None:intergenic | 35.0% | |
| GAACAGATCATAGCTCAAAT+TGG | + | chr1_1:70327376-70327395 | None:intergenic | 35.0% | |
| ATTTGAGCTATGATCTGTTC+AGG | - | chr1_1:70327376-70327395 | Msa0040250:intron | 35.0% | |
| GTCAACTATTTCCTAATGCT+CGG | + | chr1_1:70327453-70327472 | None:intergenic | 35.0% | |
| ! | ATTCCATATGATGGAGAGAT+TGG | - | chr1_1:70327580-70327599 | Msa0040250:intron | 35.0% |
| CATTTGTAACAACATGCATG+AGG | + | chr1_1:70327661-70327680 | None:intergenic | 35.0% | |
| TCATATAATCACAACCAGGT+CGG | - | chr1_1:70327700-70327719 | Msa0040250:intron | 35.0% | |
| TGTGCGAAAATATACATGGT+AGG | - | chr1_1:70327782-70327801 | Msa0040250:CDS | 35.0% | |
| CGAAAATATACATGGTAGGA+AGG | - | chr1_1:70327786-70327805 | Msa0040250:CDS | 35.0% | |
| !! | GAATAAGGTAATGGAAGCAA+TGG | + | chr1_1:70327892-70327911 | None:intergenic | 35.0% |
| CCGATTGATGAATAAGGTAA+TGG | + | chr1_1:70327901-70327920 | None:intergenic | 35.0% | |
| ATTTGATTCCACAAGCTCTT+TGG | + | chr1_1:70327966-70327985 | None:intergenic | 35.0% | |
| CTTGTGGAATCAAATGCTAT+TGG | - | chr1_1:70327971-70327990 | Msa0040250:CDS | 35.0% | |
| !! | GAAGATTCAGTTCTGAAAGC+TGG | - | chr1_1:70326985-70327004 | Msa0040250:intron | 40.0% |
| TGTTCAGGAACTAACCACAA+TGG | - | chr1_1:70327391-70327410 | Msa0040250:intron | 40.0% | |
| CTTCCGATCATTATCCATTG+TGG | + | chr1_1:70327408-70327427 | None:intergenic | 40.0% | |
| CAATGGATAATGATCGGAAG+TGG | - | chr1_1:70327408-70327427 | Msa0040250:intron | 40.0% | |
| ACTATTTCCTAATGCTCGGT+TGG | + | chr1_1:70327449-70327468 | None:intergenic | 40.0% | |
| GAGCTATGGAAAAAGAAGCT+TGG | + | chr1_1:70327477-70327496 | None:intergenic | 40.0% | |
| GCTGATGAGATTCCATATGA+TGG | - | chr1_1:70327571-70327590 | Msa0040250:intron | 40.0% | |
| GGCTTTCCGATTGATGAATA+AGG | + | chr1_1:70327907-70327926 | None:intergenic | 40.0% | |
| ATCCAAAACCAAAGAGCTTG+TGG | - | chr1_1:70327955-70327974 | Msa0040250:intron | 40.0% | |
| !! | TTCCACAAGCTCTTTGGTTT+TGG | + | chr1_1:70327960-70327979 | None:intergenic | 40.0% |
| !! | GAAGATTCAGTTCTGAAAGC+TGG | - | chr1_1:70326985-70327004 | Msa0040250:intron | 40.0% |
| TGTTCAGGAACTAACCACAA+TGG | - | chr1_1:70327391-70327410 | Msa0040250:intron | 40.0% | |
| CTTCCGATCATTATCCATTG+TGG | + | chr1_1:70327408-70327427 | None:intergenic | 40.0% | |
| CAATGGATAATGATCGGAAG+TGG | - | chr1_1:70327408-70327427 | Msa0040250:intron | 40.0% | |
| ACTATTTCCTAATGCTCGGT+TGG | + | chr1_1:70327449-70327468 | None:intergenic | 40.0% | |
| GAGCTATGGAAAAAGAAGCT+TGG | + | chr1_1:70327477-70327496 | None:intergenic | 40.0% | |
| GCTGATGAGATTCCATATGA+TGG | - | chr1_1:70327571-70327590 | Msa0040250:intron | 40.0% | |
| GGCTTTCCGATTGATGAATA+AGG | + | chr1_1:70327907-70327926 | None:intergenic | 40.0% | |
| ATCCAAAACCAAAGAGCTTG+TGG | - | chr1_1:70327955-70327974 | Msa0040250:intron | 40.0% | |
| !! | TTCCACAAGCTCTTTGGTTT+TGG | + | chr1_1:70327960-70327979 | None:intergenic | 40.0% |
| ! | CAAAGCACTCACAACAACTG+AGG | + | chr1_1:70326903-70326922 | None:intergenic | 45.0% |
| !! | ATTCAGTTCTGAAAGCTGGC+AGG | - | chr1_1:70326989-70327008 | Msa0040250:intron | 45.0% |
| !! | GTATGTGACAGAGCGTTGTT+TGG | - | chr1_1:70327022-70327041 | Msa0040250:intron | 45.0% |
| GCAGCCAAAACCAAGATCTA+GGG | - | chr1_1:70327044-70327063 | Msa0040250:intron | 45.0% | |
| TTCCTGCCATCACTGTAACT+AGG | + | chr1_1:70327229-70327248 | None:intergenic | 45.0% | |
| GGCAGGAACTCATTAGAATG+TGG | - | chr1_1:70327241-70327260 | Msa0040250:intron | 45.0% | |
| ATTCAAGCATGCATGGTTGG+TGG | + | chr1_1:70327335-70327354 | None:intergenic | 45.0% | |
| !! | TGACAAAGCTCGGTGCAAAA+AGG | + | chr1_1:70327527-70327546 | None:intergenic | 45.0% |
| GGTGACAACATGACAAAGCT+CGG | + | chr1_1:70327537-70327556 | None:intergenic | 45.0% | |
| TTGTCATGTTGTCACCTTGC+TGG | - | chr1_1:70327541-70327560 | Msa0040250:intron | 45.0% | |
| TTGTCACCTTGCTGGCAAAT+AGG | - | chr1_1:70327549-70327568 | Msa0040250:intron | 45.0% | |
| AGGCCAATCTCTCCATCATA+TGG | + | chr1_1:70327586-70327605 | None:intergenic | 45.0% | |
| CAAAGGAGTGACAATCACAG+AGG | - | chr1_1:70327623-70327642 | Msa0040250:intron | 45.0% | |
| ! | CAAAGCACTCACAACAACTG+AGG | + | chr1_1:70326903-70326922 | None:intergenic | 45.0% |
| !! | ATTCAGTTCTGAAAGCTGGC+AGG | - | chr1_1:70326989-70327008 | Msa0040250:intron | 45.0% |
| !! | GTATGTGACAGAGCGTTGTT+TGG | - | chr1_1:70327022-70327041 | Msa0040250:intron | 45.0% |
| GCAGCCAAAACCAAGATCTA+GGG | - | chr1_1:70327044-70327063 | Msa0040250:intron | 45.0% | |
| TTCCTGCCATCACTGTAACT+AGG | + | chr1_1:70327229-70327248 | None:intergenic | 45.0% | |
| GGCAGGAACTCATTAGAATG+TGG | - | chr1_1:70327241-70327260 | Msa0040250:intron | 45.0% | |
| ATTCAAGCATGCATGGTTGG+TGG | + | chr1_1:70327335-70327354 | None:intergenic | 45.0% | |
| !! | TGACAAAGCTCGGTGCAAAA+AGG | + | chr1_1:70327527-70327546 | None:intergenic | 45.0% |
| GGTGACAACATGACAAAGCT+CGG | + | chr1_1:70327537-70327556 | None:intergenic | 45.0% | |
| TTGTCATGTTGTCACCTTGC+TGG | - | chr1_1:70327541-70327560 | Msa0040250:intron | 45.0% | |
| TTGTCACCTTGCTGGCAAAT+AGG | - | chr1_1:70327549-70327568 | Msa0040250:intron | 45.0% | |
| AGGCCAATCTCTCCATCATA+TGG | + | chr1_1:70327586-70327605 | None:intergenic | 45.0% | |
| CAAAGGAGTGACAATCACAG+AGG | - | chr1_1:70327623-70327642 | Msa0040250:intron | 45.0% | |
| TCCTGTACAGTAGACTCCAG+CGG | + | chr1_1:70326926-70326945 | None:intergenic | 50.0% | |
| GGCAGCCAAAACCAAGATCT+AGG | - | chr1_1:70327043-70327062 | Msa0040250:intron | 50.0% | |
| CTCCTAGTTACAGTGATGGC+AGG | - | chr1_1:70327224-70327243 | Msa0040250:intron | 50.0% | |
| GATCGGAAGTGGTAGTTGCT+AGG | - | chr1_1:70327419-70327438 | Msa0040250:intron | 50.0% | |
| CATCAGCCTATTTGCCAGCA+AGG | + | chr1_1:70327558-70327577 | None:intergenic | 50.0% | |
| TTGTGCACATTGCCACAACG+AGG | + | chr1_1:70327606-70327625 | None:intergenic | 50.0% | |
| CGTTGTGGCAATGTGCACAA+AGG | - | chr1_1:70327606-70327625 | Msa0040250:intron | 50.0% | |
| AGGAGTGACAATCACAGAGG+TGG | - | chr1_1:70327626-70327645 | Msa0040250:intron | 50.0% | |
| AGTGACAATCACAGAGGTGG+AGG | - | chr1_1:70327629-70327648 | Msa0040250:intron | 50.0% | |
| AATCACAACCAGGTCGGTGT+TGG | - | chr1_1:70327706-70327725 | Msa0040250:intron | 50.0% | |
| TGCATATTCCAACACCGACC+TGG | + | chr1_1:70327717-70327736 | None:intergenic | 50.0% | |
| TCCTGTACAGTAGACTCCAG+CGG | + | chr1_1:70326926-70326945 | None:intergenic | 50.0% | |
| GGCAGCCAAAACCAAGATCT+AGG | - | chr1_1:70327043-70327062 | Msa0040250:intron | 50.0% | |
| CTCCTAGTTACAGTGATGGC+AGG | - | chr1_1:70327224-70327243 | Msa0040250:intron | 50.0% | |
| GATCGGAAGTGGTAGTTGCT+AGG | - | chr1_1:70327419-70327438 | Msa0040250:intron | 50.0% | |
| CATCAGCCTATTTGCCAGCA+AGG | + | chr1_1:70327558-70327577 | None:intergenic | 50.0% | |
| TTGTGCACATTGCCACAACG+AGG | + | chr1_1:70327606-70327625 | None:intergenic | 50.0% | |
| CGTTGTGGCAATGTGCACAA+AGG | - | chr1_1:70327606-70327625 | Msa0040250:intron | 50.0% | |
| AGGAGTGACAATCACAGAGG+TGG | - | chr1_1:70327626-70327645 | Msa0040250:intron | 50.0% | |
| AGTGACAATCACAGAGGTGG+AGG | - | chr1_1:70327629-70327648 | Msa0040250:intron | 50.0% | |
| AATCACAACCAGGTCGGTGT+TGG | - | chr1_1:70327706-70327725 | Msa0040250:intron | 50.0% | |
| TGCATATTCCAACACCGACC+TGG | + | chr1_1:70327717-70327736 | None:intergenic | 50.0% | |
| TGTTGTGAGTGCTTTGCCGC+TGG | - | chr1_1:70326907-70326926 | Msa0040250:CDS | 55.0% | |
| AGGCACTCCAACCGAGCATT+AGG | - | chr1_1:70327439-70327458 | Msa0040250:intron | 55.0% | |
| !! | TGGAGAGATTGGCCTCGTTG+TGG | - | chr1_1:70327591-70327610 | Msa0040250:intron | 55.0% |
| TGTTGTGAGTGCTTTGCCGC+TGG | - | chr1_1:70326907-70326926 | Msa0040250:CDS | 55.0% | |
| AGGCACTCCAACCGAGCATT+AGG | - | chr1_1:70327439-70327458 | Msa0040250:intron | 55.0% | |
| !! | TGGAGAGATTGGCCTCGTTG+TGG | - | chr1_1:70327591-70327610 | Msa0040250:intron | 55.0% |
| GCCGCTGGAGTCTACTGTAC+AGG | - | chr1_1:70326922-70326941 | Msa0040250:intron | 60.0% | |
| GCCGCTGGAGTCTACTGTAC+AGG | - | chr1_1:70326922-70326941 | Msa0040250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70326783 | 70328003 | 70326783 | ID=Msa0040250;Name=Msa0040250 |
| chr1_1 | mRNA | 70326783 | 70328003 | 70326783 | ID=Msa0040250-mRNA-1;Parent=Msa0040250;Name=Msa0040250-mRNA-1;_AED=0.47;_eAED=0.76;_QI=0|0|0|1|0|0|3|0|120 |
| chr1_1 | exon | 70327962 | 70328003 | 70327962 | ID=Msa0040250-mRNA-1:exon:23186;Parent=Msa0040250-mRNA-1 |
| chr1_1 | exon | 70327761 | 70327924 | 70327761 | ID=Msa0040250-mRNA-1:exon:23185;Parent=Msa0040250-mRNA-1 |
| chr1_1 | exon | 70326783 | 70326939 | 70326783 | ID=Msa0040250-mRNA-1:exon:23184;Parent=Msa0040250-mRNA-1 |
| chr1_1 | CDS | 70327962 | 70328003 | 70327962 | ID=Msa0040250-mRNA-1:cds;Parent=Msa0040250-mRNA-1 |
| chr1_1 | CDS | 70327761 | 70327924 | 70327761 | ID=Msa0040250-mRNA-1:cds;Parent=Msa0040250-mRNA-1 |
| chr1_1 | CDS | 70326783 | 70326939 | 70326783 | ID=Msa0040250-mRNA-1:cds;Parent=Msa0040250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
