AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040340 MtrunA17_Chr1g0205131 97.506 401 4 4 1 399 1 397 0.0 797
Msa0040340 MtrunA17_Chr6g0456881 40.173 346 109 15 84 393 108 391 9.61e-48 168
Msa0040340 MtrunA17_Chr7g0220931 36.438 365 154 12 41 393 57 355 4.66e-39 143
Msa0040340 MtrunA17_Chr4g0062691 40.625 160 66 4 96 238 120 267 1.16e-20 92.8
Msa0040340 MtrunA17_Chr8g0376571 35.404 161 69 3 109 236 60 218 1.91e-17 84.0
Msa0040340 MtrunA17_Chr4g0040921 55.738 61 27 0 109 169 21 81 4.11e-17 81.6
Msa0040340 MtrunA17_Chr8g0360441 55.738 61 27 0 109 169 53 113 1.12e-16 81.3
Msa0040340 MtrunA17_Chr2g0316391 57.377 61 26 0 109 169 19 79 1.65e-16 79.3
Msa0040340 MtrunA17_Chr2g0325171 53.333 60 28 0 109 168 23 82 1.75e-16 79.7
Msa0040340 MtrunA17_Chr4g0061561 37.037 108 67 1 109 216 56 162 1.88e-13 70.5
Msa0040340 MtrunA17_Chr6g0454781 51.667 60 29 0 109 168 48 107 2.24e-13 70.9
Msa0040340 MtrunA17_Chr7g0219461 44.444 81 45 0 109 189 56 136 1.36e-12 68.6
Msa0040340 MtrunA17_Chr3g0086961 48.333 60 31 0 109 168 56 115 1.45e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040340 AT1G67260.2 42.690 171 67 5 110 253 87 253 6.30e-27 110
Msa0040340 AT1G67260.3 42.690 171 67 5 110 253 87 253 6.30e-27 110
Msa0040340 AT1G67260.1 42.690 171 67 5 110 253 87 253 8.51e-27 110
Msa0040340 AT1G68800.2 68.182 66 21 0 110 175 112 177 3.02e-21 94.7
Msa0040340 AT1G68800.1 68.182 66 21 0 110 175 112 177 3.36e-21 94.4
Msa0040340 AT3G18550.2 30.043 233 104 8 61 235 66 297 1.26e-18 87.8
Msa0040340 AT3G18550.3 31.034 232 101 8 61 234 66 296 2.41e-18 86.7
Msa0040340 AT4G18390.1 39.850 133 68 2 109 236 41 166 2.81e-18 85.9
Msa0040340 AT4G18390.2 39.850 133 68 2 109 236 41 166 2.81e-18 85.9
Msa0040340 AT3G18550.1 29.958 237 103 9 61 235 66 301 3.20e-18 86.7
Msa0040340 AT3G18550.4 29.958 237 103 9 61 235 66 301 3.20e-18 86.7
Msa0040340 AT1G30210.2 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0040340 AT1G30210.1 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0040340 AT1G53230.1 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0040340 AT1G53230.2 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0040340 AT3G15030.2 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0040340 AT3G15030.4 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0040340 AT3G15030.3 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0040340 AT3G15030.1 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0040340 AT2G31070.1 56.667 60 26 0 109 168 28 87 2.51e-16 80.1
Msa0040340 AT3G02150.1 51.667 60 29 0 109 168 73 132 1.63e-12 67.8
Msa0040340 AT3G02150.2 51.667 60 29 0 109 168 73 132 2.23e-12 68.2
Msa0040340 AT5G60970.1 46.667 60 32 0 109 168 62 121 1.85e-11 65.5

Find 71 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGTCACAACAAAATT+TGG 0.083599 1_1:+70498446 None:intergenic
GATGAAGAAGGGAAATTATT+AGG 0.158390 1_1:+70498710 None:intergenic
TCCCTTGTTCAACTCCAAAT+TGG 0.198049 1_1:-70497614 Msa0040340:CDS
CCTTAGGGATAGTAGGAATT+AGG 0.215420 1_1:+70497685 None:intergenic
AGGAATCCATTATGATTAAA+AGG 0.231280 1_1:-70497749 Msa0040340:CDS
AGAAAAGAAAGGGTACTATT+AGG 0.235751 1_1:+70498671 None:intergenic
TGGAGTTGAACAAGGGAATA+AGG 0.272402 1_1:+70497620 None:intergenic
TTGGAGCTAGTCTCCCAATT+TGG 0.297661 1_1:+70497600 None:intergenic
AAGAAGAGTAGTATTGTTAT+TGG 0.300314 1_1:+70498619 None:intergenic
TTGAAACTTGGTAATTCCTT+AGG 0.318513 1_1:+70497669 None:intergenic
TCATAATCATCATAACCTAT+TGG 0.320855 1_1:-70497814 Msa0040340:CDS
GGATAGTAGGAATTAGGTTT+TGG 0.326225 1_1:+70497691 None:intergenic
AAACAACCAGCAGCAGTTAT+AGG 0.340022 1_1:-70498422 Msa0040340:CDS
GAATGCAACAAGAAGAAATT+AGG 0.347577 1_1:-70497992 Msa0040340:CDS
GAAAAGAAAGGGTACTATTA+GGG 0.366150 1_1:+70498672 None:intergenic
CAAGATAATGGCTACAACTT+TGG 0.372622 1_1:-70498491 Msa0040340:CDS
AGAAGAGTAGTATTGTTATT+GGG 0.374456 1_1:+70498620 None:intergenic
ATGAAGAAGGGAAATTATTA+GGG 0.385216 1_1:+70498711 None:intergenic
CCCTTGTTCAACTCCAAATT+GGG 0.387307 1_1:-70497613 Msa0040340:CDS
GCAATGTTTGAACAAGATAA+TGG 0.390494 1_1:-70498503 Msa0040340:CDS
TAGGTATTTCACTATCCAAT+AGG 0.395659 1_1:+70497799 None:intergenic
TTTCCTCCTATAACTGCTGC+TGG 0.420270 1_1:+70498416 None:intergenic
AAAAGAAGGGTTACTACTAT+AGG 0.421997 1_1:+70497836 None:intergenic
GGTAATTCCTTAGGGATAGT+AGG 0.423994 1_1:+70497678 None:intergenic
GTTGAATCTGCACCAGGTCC+AGG 0.426040 1_1:+70497966 None:intergenic
AGCCACTCAAGTGTGTTACT+TGG 0.429932 1_1:+70498275 None:intergenic
CAATCTGCAAAATTAGCATC+AGG 0.430784 1_1:+70498536 None:intergenic
TTATAGGAGGAAAGAAAGAT+AGG 0.430839 1_1:-70498406 Msa0040340:CDS
TTAATATTGTGGTTGAAACT+TGG 0.430928 1_1:+70497657 None:intergenic
CTAAAGGGAGAAAATTGAAA+TGG 0.439828 1_1:-70498106 Msa0040340:CDS
ATGGTAGTTGTTCTTCTAAA+GGG 0.441018 1_1:-70498121 Msa0040340:CDS
GAAGAAGAAGATGATGAAGA+AGG 0.449349 1_1:+70498698 None:intergenic
AATCATTATTATTAATATTG+TGG 0.455465 1_1:+70497646 None:intergenic
TGAAACTTGGTAATTCCTTA+GGG 0.456765 1_1:+70497670 None:intergenic
GATGGTAGTTGTTCTTCTAA+AGG 0.462971 1_1:-70498122 Msa0040340:CDS
GTCACAACAAAATTTGGAAT+CGG 0.465229 1_1:+70498452 None:intergenic
TCTGGCGGTGGTGGCGGCGA+TGG 0.465460 1_1:-70498140 Msa0040340:CDS
TTATGATGATTATGAAAAGA+AGG 0.467263 1_1:+70497822 None:intergenic
AAGAAGAAGATGATGAAGAA+GGG 0.472483 1_1:+70498699 None:intergenic
AGTGGCTATTCCACAAAAGT+TGG 0.483262 1_1:+70497581 None:intergenic
TCAGTTTCAGTACTATCAAC+AGG 0.489731 1_1:+70497897 None:intergenic
ATTGTCAATGAGAAAAGAAA+GGG 0.521480 1_1:+70498661 None:intergenic
TATGATGATTATGAAAAGAA+GGG 0.526879 1_1:+70497823 None:intergenic
GATTGTCAATGAGAAAAGAA+AGG 0.527029 1_1:+70498660 None:intergenic
AGTGAAATACCTAGAGATCA+TGG 0.535750 1_1:-70497789 Msa0040340:CDS
TTAAATCCACCATGATCTCT+AGG 0.537094 1_1:+70497780 None:intergenic
GTATTTGTTGAATCTGCACC+AGG 0.542255 1_1:+70497960 None:intergenic
TGGTGGATTTAATGTGATTG+AGG 0.542326 1_1:-70497769 Msa0040340:CDS
CCTAATTCCTACTATCCCTA+AGG 0.544884 1_1:-70497685 Msa0040340:CDS
TCCCAATTTGGAGTTGAACA+AGG 0.545085 1_1:+70497612 None:intergenic
CAAGAGCAAGAGCTAGAGAA+AGG 0.553192 1_1:-70498043 Msa0040340:CDS
GCAAAATTAGCATCAGGGAA+TGG 0.555133 1_1:+70498542 None:intergenic
CAGTAAGATTCACACATCAC+AGG 0.558791 1_1:-70498381 Msa0040340:CDS
GAAATTAGGTACCCTGGACC+TGG 0.562470 1_1:-70497978 Msa0040340:CDS
TTGAATCTGCACCAGGTCCA+GGG 0.571969 1_1:+70497967 None:intergenic
CTACATGCTTCTTGAATCCG+TGG 0.574833 1_1:-70497548 Msa0040340:CDS
TGTTACAAGATGTGTAGTAG+TGG 0.600399 1_1:-70498017 Msa0040340:CDS
CAAGAAGAAATTAGGTACCC+TGG 0.600461 1_1:-70497984 Msa0040340:CDS
AAACTGAGGCTTATGCAAGA+TGG 0.603501 1_1:-70497881 Msa0040340:CDS
TGTTGATAGTACTGAAACTG+AGG 0.605008 1_1:-70497895 Msa0040340:CDS
CCCAATTTGGAGTTGAACAA+GGG 0.612112 1_1:+70497613 None:intergenic
CACAGGGTTTGAGAGACAGA+AGG 0.612414 1_1:-70498364 Msa0040340:CDS
ACTTAGTTAATTACTTACCA+CGG 0.614778 1_1:+70497531 None:intergenic
CAACCAGCAGCAGTTATAGG+AGG 0.626000 1_1:-70498419 Msa0040340:CDS
AATCTGCAAAATTAGCATCA+GGG 0.626917 1_1:+70498537 None:intergenic
ACAGGGTTTGAGAGACAGAA+GGG 0.629239 1_1:-70498363 Msa0040340:CDS
GCATGTAGATAGATTCATAG+TGG 0.634816 1_1:+70497563 None:intergenic
AGTAAGATTCACACATCACA+GGG 0.651645 1_1:-70498380 Msa0040340:CDS
TGATGTGTTGATGTAGTGAA+AGG 0.657369 1_1:+70498575 None:intergenic
AACCAAGTAACACACTTGAG+TGG 0.665918 1_1:-70498277 Msa0040340:CDS
GAAATACCTAGAGATCATGG+TGG 0.750657 1_1:-70497786 Msa0040340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTATTATTAATATTG+TGG + chr1_1:70498624-70498643 None:intergenic 10.0%
!! AATCATTATTATTAATATTG+TGG + chr1_1:70498624-70498643 None:intergenic 10.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_1:70498096-70498115 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_1:70498097-70498116 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_1:70498447-70498466 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_1:70498448-70498467 None:intergenic 20.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_1:70498096-70498115 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_1:70498097-70498116 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_1:70498447-70498466 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_1:70498448-70498467 None:intergenic 20.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_1:70497559-70497578 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_1:70497609-70497628 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_1:70497632-70497651 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_1:70497650-70497669 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_1:70497651-70497670 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+TGG - chr1_1:70498109-70498128 Msa0040340:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_1:70498453-70498472 Msa0040340:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG - chr1_1:70498518-70498537 Msa0040340:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG + chr1_1:70498527-70498546 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_1:70498613-70498632 None:intergenic 25.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_1:70497559-70497578 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_1:70497609-70497628 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_1:70497632-70497651 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_1:70497650-70497669 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_1:70497651-70497670 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+TGG - chr1_1:70498109-70498128 Msa0040340:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_1:70498453-70498472 Msa0040340:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG - chr1_1:70498518-70498537 Msa0040340:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG + chr1_1:70498527-70498546 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_1:70498613-70498632 None:intergenic 25.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_1:70497560-70497579 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_1:70497571-70497590 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG + chr1_1:70497598-70497617 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG + chr1_1:70497599-70497618 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_1:70497610-70497629 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_1:70497733-70497752 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_1:70497764-70497783 Msa0040340:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG + chr1_1:70497818-70497837 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_1:70497861-70497880 Msa0040340:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_1:70498146-70498165 Msa0040340:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_1:70498161-70498180 Msa0040340:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_1:70498275-70498294 Msa0040340:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_1:70498434-70498453 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_1:70498471-70498490 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_1:70498600-70498619 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_1:70498601-70498620 None:intergenic 30.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_1:70497560-70497579 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_1:70497571-70497590 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG + chr1_1:70497598-70497617 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG + chr1_1:70497599-70497618 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_1:70497610-70497629 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_1:70497733-70497752 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_1:70497764-70497783 Msa0040340:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG + chr1_1:70497818-70497837 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_1:70497861-70497880 Msa0040340:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_1:70498146-70498165 Msa0040340:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_1:70498161-70498180 Msa0040340:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_1:70498275-70498294 Msa0040340:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_1:70498434-70498453 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_1:70498471-70498490 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_1:70498600-70498619 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_1:70498601-70498620 None:intergenic 30.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_1:70497572-70497591 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_1:70497695-70497714 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_1:70497734-70497753 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_1:70497776-70497795 Msa0040340:CDS 35.0%
TGCTCTGTCACAACAAAATT+TGG + chr1_1:70497824-70497843 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_1:70497887-70497906 Msa0040340:CDS 35.0%
! AGCAACAAATCATTTTCTGG+CGG - chr1_1:70498112-70498131 Msa0040340:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_1:70498145-70498164 Msa0040340:CDS 35.0%
TGTTACAAGATGTGTAGTAG+TGG - chr1_1:70498250-70498269 Msa0040340:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_1:70498373-70498392 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_1:70498372-70498391 Msa0040340:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_1:70498478-70498497 Msa0040340:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_1:70498490-70498509 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_1:70498498-70498517 Msa0040340:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_1:70498579-70498598 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_1:70498707-70498726 None:intergenic 35.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_1:70497572-70497591 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_1:70497695-70497714 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_1:70497734-70497753 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_1:70497776-70497795 Msa0040340:CDS 35.0%
TGCTCTGTCACAACAAAATT+TGG + chr1_1:70497824-70497843 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_1:70497887-70497906 Msa0040340:CDS 35.0%
! AGCAACAAATCATTTTCTGG+CGG - chr1_1:70498112-70498131 Msa0040340:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_1:70498145-70498164 Msa0040340:CDS 35.0%
TGTTACAAGATGTGTAGTAG+TGG - chr1_1:70498250-70498269 Msa0040340:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_1:70498373-70498392 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_1:70498372-70498391 Msa0040340:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_1:70498478-70498497 Msa0040340:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_1:70498490-70498509 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_1:70498498-70498517 Msa0040340:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_1:70498579-70498598 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_1:70498707-70498726 None:intergenic 35.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_1:70497728-70497747 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_1:70497845-70497864 Msa0040340:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_1:70497886-70497905 Msa0040340:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG - chr1_1:70497990-70498009 Msa0040340:CDS 40.0%
!! AACAAATCATTTTCTGGCGG+TGG - chr1_1:70498115-70498134 Msa0040340:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_1:70498283-70498302 Msa0040340:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_1:70498310-70498329 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_1:70498386-70498405 Msa0040340:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_1:70498481-70498500 Msa0040340:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_1:70498585-70498604 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_1:70498582-70498601 Msa0040340:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_1:70498592-70498611 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_1:70498650-70498669 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_1:70498653-70498672 Msa0040340:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_1:70498657-70498676 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_1:70498654-70498673 Msa0040340:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_1:70498658-70498677 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_1:70498689-70498708 None:intergenic 40.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_1:70497728-70497747 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_1:70497845-70497864 Msa0040340:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_1:70497886-70497905 Msa0040340:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG - chr1_1:70497990-70498009 Msa0040340:CDS 40.0%
!! AACAAATCATTTTCTGGCGG+TGG - chr1_1:70498115-70498134 Msa0040340:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_1:70498283-70498302 Msa0040340:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_1:70498310-70498329 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_1:70498386-70498405 Msa0040340:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_1:70498481-70498500 Msa0040340:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_1:70498585-70498604 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_1:70498582-70498601 Msa0040340:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_1:70498592-70498611 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_1:70498650-70498669 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_1:70498653-70498672 Msa0040340:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_1:70498657-70498676 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_1:70498654-70498673 Msa0040340:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_1:70498658-70498677 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_1:70498689-70498708 None:intergenic 40.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_1:70497854-70497873 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_1:70497904-70497923 Msa0040340:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG + chr1_1:70497995-70498014 None:intergenic 45.0%
!! AAATCATTTTCTGGCGGTGG+TGG - chr1_1:70498118-70498137 Msa0040340:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_1:70498224-70498243 Msa0040340:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_1:70498670-70498689 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_1:70498676-70498695 Msa0040340:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_1:70498719-70498738 Msa0040340:CDS 45.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_1:70497854-70497873 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_1:70497904-70497923 Msa0040340:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG + chr1_1:70497995-70498014 None:intergenic 45.0%
!! AAATCATTTTCTGGCGGTGG+TGG - chr1_1:70498118-70498137 Msa0040340:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_1:70498224-70498243 Msa0040340:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_1:70498670-70498689 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_1:70498676-70498695 Msa0040340:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_1:70498719-70498738 Msa0040340:CDS 45.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_1:70497848-70497867 Msa0040340:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_1:70497903-70497922 Msa0040340:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_1:70498289-70498308 Msa0040340:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_1:70498303-70498322 None:intergenic 50.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_1:70497848-70497867 Msa0040340:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_1:70497903-70497922 Msa0040340:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_1:70498289-70498308 Msa0040340:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_1:70498303-70498322 None:intergenic 50.0%
!! TCATTTTCTGGCGGTGGTGG+CGG - chr1_1:70498121-70498140 Msa0040340:CDS 55.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_1:70498304-70498323 None:intergenic 55.0%
!! TCATTTTCTGGCGGTGGTGG+CGG - chr1_1:70498121-70498140 Msa0040340:CDS 55.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_1:70498304-70498323 None:intergenic 55.0%
!! TCTGGCGGTGGTGGCGGCGA+TGG - chr1_1:70498127-70498146 Msa0040340:CDS 75.0%
!! TCTGGCGGTGGTGGCGGCGA+TGG - chr1_1:70498127-70498146 Msa0040340:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70497545 70498744 70497545 ID=Msa0040340;Name=Msa0040340
chr1_1 mRNA 70497545 70498744 70497545 ID=Msa0040340-mRNA-1;Parent=Msa0040340;Name=Msa0040340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|399
chr1_1 exon 70497545 70498744 70497545 ID=Msa0040340-mRNA-1:exon:23246;Parent=Msa0040340-mRNA-1
chr1_1 CDS 70497545 70498744 70497545 ID=Msa0040340-mRNA-1:cds;Parent=Msa0040340-mRNA-1
Gene Sequence

>Msa0040340

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTTTGTTGTGACAGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCTGGCGGTGGTGGCGGCGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGTAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAAAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA
Protein sequence

>Msa0040340

MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNFVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW*