AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040560 MtrunA17_Chr1g0205751 99.290 704 5 0 1 704 1 704 0.0 1426
Msa0040560 MtrunA17_Chr5g0394261 84.848 693 103 1 12 702 7 699 0.0 1170
Msa0040560 MtrunA17_Chr7g0259851 63.490 682 241 4 18 698 11 685 0.0 843
Msa0040560 MtrunA17_Chr1g0149211 27.436 390 251 13 137 508 104 479 1.58e-19 92.8
Msa0040560 MtrunA17_Chr1g0152561 26.400 250 176 3 295 536 74 323 2.07e-16 81.3
Msa0040560 MtrunA17_Chr7g0259501 30.675 163 93 3 517 664 187 344 6.18e-16 80.5
Msa0040560 MtrunA17_Chr3g0106931 30.978 184 125 2 194 377 549 730 3.13e-15 79.7
Msa0040560 MtrunA17_Chr1g0185861 30.488 164 90 4 519 664 191 348 1.49e-14 76.6
Msa0040560 MtrunA17_Chr5g0440341 25.510 196 124 6 524 700 183 375 3.06e-12 69.3
Msa0040560 MtrunA17_Chr4g0031431 30.769 195 131 4 198 391 353 544 4.54e-12 69.3
Msa0040560 MtrunA17_Chr7g0261371 28.270 237 161 4 175 411 497 724 5.56e-12 69.3
Msa0040560 MtrunA17_Chr4g0074371 24.138 319 217 10 59 372 47 345 1.90e-11 67.0
Msa0040560 MtrunA17_Chr1g0199321 30.928 194 132 2 198 391 345 536 6.52e-11 65.9
Msa0040560 MtrunA17_Chr3g0084371 25.161 310 202 8 220 513 238 533 9.72e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040560 AT5G19330.1 78.887 701 144 2 4 702 6 704 0.0 1093
Msa0040560 AT5G19330.2 73.077 650 116 7 4 645 6 604 0.0 872
Msa0040560 AT5G13060.1 61.970 660 249 2 39 697 68 726 0.0 831
Msa0040560 AT3G06190.5 31.461 178 100 4 522 681 182 355 3.06e-17 84.3
Msa0040560 AT3G06190.1 31.677 161 89 3 522 664 182 339 4.50e-16 81.6
Msa0040560 AT5G19000.1 29.114 158 97 2 522 664 183 340 1.31e-13 73.9
Msa0040560 AT5G19000.3 29.114 158 97 2 522 664 183 340 1.31e-13 73.9
Msa0040560 AT2G23140.2 30.978 184 125 2 194 377 539 720 1.61e-13 74.7
Msa0040560 AT2G23140.4 30.978 184 125 2 194 377 539 720 1.61e-13 74.7
Msa0040560 AT2G23140.1 30.978 184 125 2 194 377 542 723 1.64e-13 74.7
Msa0040560 AT1G23030.1 25.798 376 236 9 140 509 272 610 1.80e-13 74.3
Msa0040560 AT3G03740.1 27.778 180 112 3 533 696 210 387 2.08e-13 73.6
Msa0040560 AT3G46510.1 26.502 283 173 6 198 480 354 601 2.52e-13 73.9
Msa0040560 AT2G23140.3 30.978 184 125 2 194 377 350 531 2.66e-13 73.9
Msa0040560 AT2G23140.5 30.978 184 125 2 194 377 350 531 2.66e-13 73.9
Msa0040560 AT4G02150.1 25.407 307 202 11 72 372 139 424 4.53e-13 72.8
Msa0040560 AT3G43700.3 34.014 147 78 4 539 667 205 350 6.29e-13 71.2
Msa0040560 AT3G43700.2 34.014 147 78 4 539 667 205 350 6.45e-13 71.2
Msa0040560 AT3G43700.1 34.014 147 78 4 539 667 205 350 8.12e-13 71.6
Msa0040560 AT3G01400.1 26.147 218 145 4 290 495 73 286 1.37e-12 70.1
Msa0040560 AT5G67340.1 25.714 280 185 7 146 411 364 634 2.19e-12 70.9
Msa0040560 AT5G67340.2 25.714 280 185 7 146 411 364 634 2.19e-12 70.9
Msa0040560 AT4G02150.2 25.172 290 191 10 72 356 139 407 3.38e-12 69.3
Msa0040560 AT5G58680.1 25.229 218 151 3 288 495 69 284 3.88e-12 68.9
Msa0040560 AT3G06720.1 22.500 320 221 9 59 372 123 421 4.86e-11 66.2
Msa0040560 AT3G06720.2 22.500 320 221 9 59 372 123 421 4.86e-11 66.2
Msa0040560 AT2G39760.1 32.143 140 77 2 540 664 195 331 6.09e-11 65.5
Msa0040560 AT2G39760.2 32.143 140 77 2 540 664 195 331 8.57e-11 64.7
Msa0040560 AT2G39760.4 32.143 140 77 2 540 664 195 331 9.10e-11 64.7
Msa0040560 AT2G39760.3 32.143 140 77 2 540 664 195 331 9.10e-11 64.7

Find 200 sgRNAs with CRISPR-Local

Find 616 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTCCCATCTAATATT+TGG 0.076983 1_1:-70791369 None:intergenic
GCCGCTTCCCTCTGACTTTC+AGG 0.083665 1_1:-70787211 None:intergenic
CCCTTCTTCTCTCTCGTTCA+TGG 0.174906 1_1:+70784061 Msa0040560:exon
ATTAAACTGCTGGGTAATTT+AGG 0.203631 1_1:+70792808 Msa0040560:three_prime_UTR
CTCTTATTCTTCCTCTCTAC+TGG 0.226379 1_1:-70793047 None:intergenic
GGTGCTTTACAACCAGTTAT+TGG 0.256939 1_1:+70786984 Msa0040560:CDS
AGACAGGGCCGAGGCTTTAT+TGG 0.273094 1_1:-70789858 None:intergenic
TGCCTTTGCATTGGGGAGAT+TGG 0.285881 1_1:+70787795 Msa0040560:CDS
TCACTGCAGATTACAGTCTA+TGG 0.287035 1_1:-70792452 None:intergenic
AGAACCTCTTTCTTTATATT+CGG 0.303887 1_1:-70786954 None:intergenic
AAAGGGAGTGCTTTCGCATT+AGG 0.305562 1_1:+70784527 Msa0040560:CDS
AATCAAAATCAGATAGAAAA+TGG 0.310165 1_1:-70783975 None:intergenic
CCTACGAATGAGACTATTAA+TGG 0.310848 1_1:-70786385 None:intergenic
TCCACCACTTGTTCATTTGC+TGG 0.314607 1_1:+70786561 Msa0040560:CDS
CAATGTTTGATGGTGGTTAT+AGG 0.316662 1_1:+70790959 Msa0040560:CDS
ATAATGTGTCGGATTTCATT+AGG 0.317549 1_1:+70789081 Msa0040560:CDS
TGTCTCTCAGGATATATTAC+TGG 0.318295 1_1:+70791738 Msa0040560:intron
AAACTTCCCATCTAATATTT+GGG 0.326330 1_1:-70791368 None:intergenic
CAAGACATTGAAAAGATTAG+AGG 0.333836 1_1:+70789362 Msa0040560:CDS
TAGAGATCCCAAATATTAGA+TGG 0.348876 1_1:+70791361 Msa0040560:CDS
AAGAAAGAGGTTCTATTTGC+TGG 0.352180 1_1:+70786963 Msa0040560:CDS
TGTGGAAGGAGGTGCGATTC+CGG 0.359310 1_1:+70784427 Msa0040560:CDS
TTCACAAACAATTAAACTGC+TGG 0.367993 1_1:+70792798 Msa0040560:three_prime_UTR
GCATCCAGATTTATATATAC+TGG 0.370319 1_1:+70791497 Msa0040560:intron
GAAATGTCTGCCTTTGCATT+GGG 0.370822 1_1:+70787787 Msa0040560:CDS
TCTCGTCGAAGTTGCTAATC+AGG 0.372235 1_1:+70784211 Msa0040560:CDS
AGCACCATCAAGTTGCTGTT+TGG 0.377790 1_1:-70789816 None:intergenic
TACCTAAGTAATCCAATAAC+TGG 0.378852 1_1:-70786996 None:intergenic
TTCTGAACGCAATCAGTAAC+AGG 0.383768 1_1:-70784476 None:intergenic
AGATAGAAAATGGCGAGAAT+TGG 0.385650 1_1:-70783965 None:intergenic
AGAAGGTCTTGAGCAATATC+TGG 0.388231 1_1:-70791536 None:intergenic
CCTCAATGATAATGCATTGA+AGG 0.391244 1_1:-70791794 None:intergenic
AAGAATAAGAGGGGTGCAGT+TGG 0.392577 1_1:+70793059 Msa0040560:three_prime_UTR
GACGAGATCTGACGGTCTTC+CGG 0.398909 1_1:-70784155 None:intergenic
AAATGATGAAAATAAAATTC+AGG 0.399085 1_1:+70786645 Msa0040560:CDS
GAGACACCAGCAGCATGCCT+TGG 0.400512 1_1:-70792904 None:intergenic
GAAGGAGGAGCGGCGTCTAC+AGG 0.402577 1_1:-70789881 None:intergenic
CTTTCTTTCTTTCTTTGATG+TGG 0.410738 1_1:+70792617 Msa0040560:three_prime_UTR
ATTCTTCTTTGATCATCTGC+AGG 0.411866 1_1:-70789626 None:intergenic
CCGCTTCCCTCTGACTTTCA+GGG 0.417129 1_1:-70787210 None:intergenic
ACAAAGTAATTGCGGATCTC+TGG 0.420288 1_1:-70792405 None:intergenic
ACAATTAGTTGTTGATGTTC+CGG 0.420661 1_1:-70786294 None:intergenic
TACATTCTGTACATCGCAAT+TGG 0.421151 1_1:-70792494 None:intergenic
TAATGTGTCGGATTTCATTA+GGG 0.421529 1_1:+70789082 Msa0040560:CDS
AGGGAAGCGGCATTGTTACT+TGG 0.426859 1_1:+70787223 Msa0040560:CDS
TGTACATCGCAATTGGTTAG+AGG 0.428663 1_1:-70792487 None:intergenic
AGCTCCAAACAGCAACTTGA+TGG 0.434657 1_1:+70789812 Msa0040560:CDS
TCATAGATATAGTAAATATA+CGG 0.436226 1_1:+70792674 Msa0040560:three_prime_UTR
CAGTAGAGAGGAAGAATAAG+AGG 0.436926 1_1:+70793048 Msa0040560:three_prime_UTR
TTCTCAACTTCATGCTCAAA+CGG 0.439189 1_1:-70784506 None:intergenic
TTCTTGTGTTGTACCAGGAA+GGG 0.439973 1_1:+70792525 Msa0040560:three_prime_UTR
GCATTTCGTGCAATGTTTGA+TGG 0.440899 1_1:+70790949 Msa0040560:CDS
TAAGTTAGACGAAGAATTAC+CGG 0.441802 1_1:+70784136 Msa0040560:CDS
AATGTTTGATGGTGGTTATA+GGG 0.449011 1_1:+70790960 Msa0040560:CDS
AGACACCAGCAGCATGCCTT+GGG 0.449571 1_1:-70792903 None:intergenic
AGTCGACCTGTATACCATAA+AGG 0.450146 1_1:-70792553 None:intergenic
AAGATCAACAAGGTGTGTTA+AGG 0.453328 1_1:-70786328 None:intergenic
ATTTGAATGGATCACAGAAC+TGG 0.458725 1_1:-70783933 None:intergenic
TTGGAAATGAAAGATTTGAA+TGG 0.459307 1_1:-70783946 None:intergenic
AGAAATGTCTGCCTTTGCAT+TGG 0.459751 1_1:+70787786 Msa0040560:CDS
ATCAAGTTGCTGTTTGGAGC+TGG 0.459757 1_1:-70789810 None:intergenic
GAAATGAATGCGTAGAGAAA+AGG 0.460495 1_1:+70793003 Msa0040560:three_prime_UTR
TGCATTGGGGAGATTGGCCC+AGG 0.465694 1_1:+70787801 Msa0040560:CDS
ATTTCTCTAAGTTGTACATC+AGG 0.465886 1_1:-70787769 None:intergenic
AATAAGAGGGGTGCAGTTGG+AGG 0.466339 1_1:+70793062 Msa0040560:three_prime_UTR
TTTCTTGTGTTGTACCAGGA+AGG 0.469611 1_1:+70792524 Msa0040560:three_prime_UTR
TCTTGTGTTGTACCAGGAAG+GGG 0.473703 1_1:+70792526 Msa0040560:three_prime_UTR
TCCATGAACGAGAGAGAAGA+AGG 0.480698 1_1:-70784062 None:intergenic
TCTTATTCTTCCTCTCTACT+GGG 0.481698 1_1:-70793046 None:intergenic
GGGTCTCCTTTATGGTATAC+AGG 0.483215 1_1:+70792547 Msa0040560:three_prime_UTR
TTTCTTATGCAATATTGTGA+TGG 0.483721 1_1:+70792713 Msa0040560:three_prime_UTR
AACAATTATCATATGAGGAA+TGG 0.488923 1_1:-70792738 None:intergenic
GAGCGGCGTCTACAGGAGAC+AGG 0.489511 1_1:-70789874 None:intergenic
CATGAGAGGCAAACCTGACA+TGG 0.490179 1_1:-70786458 None:intergenic
CTCGCCGATCTCGCGAAGAA+TGG 0.492122 1_1:+70784305 Msa0040560:CDS
TACGGCCCAAGGCATGCTGC+TGG 0.492787 1_1:+70792898 Msa0040560:three_prime_UTR
TCACTGCCTCTCCGAGAGGA+AGG 0.495947 1_1:+70784103 Msa0040560:CDS
ACTGCCTCTCCGAGAGGAAG+GGG 0.496118 1_1:+70784105 Msa0040560:CDS
TCTCGGAGAGGCAGTGACCT+TGG 0.498509 1_1:-70784097 None:intergenic
TGCTCATAGAATATGTCTAC+TGG 0.499097 1_1:+70790915 Msa0040560:CDS
TTTGAGCATGAAGTTGAGAA+AGG 0.499940 1_1:+70784509 Msa0040560:CDS
GTATTACAGGTTGGTGTGAT+CGG 0.500755 1_1:+70786912 Msa0040560:intron
ATCTTATGCGAGTTTCAGAA+AGG 0.503114 1_1:+70789561 Msa0040560:CDS
GCAACATTAAAACCCATGTC+AGG 0.505215 1_1:+70786445 Msa0040560:CDS
ACGTTAACAATTATCATATG+AGG 0.508263 1_1:-70792743 None:intergenic
TTCTTCTTACAGGTTTACTT+AGG 0.509350 1_1:+70790697 Msa0040560:intron
TCTTATGCGAGTTTCAGAAA+GGG 0.510889 1_1:+70789562 Msa0040560:CDS
TTTACCATTCTTCGCGAGAT+CGG 0.511331 1_1:-70784309 None:intergenic
AGATATGTTCCGTAGACCTA+TGG 0.512252 1_1:-70792979 None:intergenic
TTTCTGTGTAGGATGGAAGG+TGG 0.512896 1_1:+70786535 Msa0040560:intron
TTATGGCCTTGCAGAGAATG+AGG 0.514595 1_1:+70788256 Msa0040560:CDS
TAATGATGCTAGAGACAGAA+AGG 0.515534 1_1:-70792648 None:intergenic
TGTGGTGTTGGTTGGCGCTA+TGG 0.517130 1_1:-70784028 None:intergenic
CCATTAATAGTCTCATTCGT+AGG 0.517559 1_1:+70786385 Msa0040560:CDS
AGATTACAGTCTATGGGAGT+TGG 0.519743 1_1:-70792445 None:intergenic
GCACGTTCGTCGGCGGTAGG+CGG 0.520168 1_1:-70784182 None:intergenic
CCCTGAAAGTCAGAGGGAAG+CGG 0.523107 1_1:+70787210 Msa0040560:CDS
AGAGAACATGCACTACTCTC+TGG 0.523360 1_1:-70792592 None:intergenic
TGGCGCTATGGTTAACAGAA+TGG 0.523930 1_1:-70784016 None:intergenic
ATTGATCAGCTGCTCGAAGA+AGG 0.530249 1_1:-70791553 None:intergenic
CACTGCCTCTCCGAGAGGAA+GGG 0.532570 1_1:+70784104 Msa0040560:CDS
TTGAGCATGAAGTTGAGAAA+GGG 0.538121 1_1:+70784510 Msa0040560:CDS
ATCTCCGAATATAAAGAAAG+AGG 0.539197 1_1:+70786950 Msa0040560:CDS
TGCTGTGGCTTTATGCAAGT+TGG 0.544148 1_1:+70789835 Msa0040560:CDS
TTCTTCTTTGATCATCTGCA+GGG 0.544161 1_1:-70789625 None:intergenic
CCTTCAATGCATTATCATTG+AGG 0.544504 1_1:+70791794 Msa0040560:CDS
TGAAGATGCTTAATCAAAGC+CGG 0.546672 1_1:-70784446 None:intergenic
GAGAAGTGCCGCACGTTCGT+CGG 0.547594 1_1:-70784192 None:intergenic
TCGGATTTCATTAGGGTAGG+TGG 0.548232 1_1:+70789089 Msa0040560:CDS
GGTGAAGAAGAGTGTGGTGT+TGG 0.550186 1_1:-70784040 None:intergenic
GTTATTTCTTGTGTTGTACC+AGG 0.550400 1_1:+70792520 Msa0040560:three_prime_UTR
AACCAGTTATTGGATTACTT+AGG 0.550875 1_1:+70786994 Msa0040560:CDS
TCACAAACAATTAAACTGCT+GGG 0.551171 1_1:+70792799 Msa0040560:three_prime_UTR
TCCTCCTTCTCCAACACCAC+AGG 0.551268 1_1:+70789895 Msa0040560:CDS
ACCTGTGGTGTTGGAGAAGG+AGG 0.552899 1_1:-70789896 None:intergenic
TACTATACTCGTACGGCCCA+AGG 0.554502 1_1:+70792887 Msa0040560:three_prime_UTR
TTAATTCCTGTCGTCTGACA+TGG 0.554773 1_1:+70792839 Msa0040560:three_prime_UTR
ATAAGTTGAGCGCGAGGCAA+GGG 0.555428 1_1:+70791851 Msa0040560:CDS
CACTGCAGATTACAGTCTAT+GGG 0.555635 1_1:-70792451 None:intergenic
ACTGCTGGGTAATTTAGGCC+AGG 0.556364 1_1:+70792813 Msa0040560:three_prime_UTR
TCCAGCAAATGAACAAGTGG+TGG 0.556965 1_1:-70786562 None:intergenic
CGCAGCATTAGAATCAGAGT+CGG 0.557692 1_1:-70786760 None:intergenic
CATTGTGTGCAATACCAGCT+TGG 0.557922 1_1:-70788160 None:intergenic
AAGGTGCAAAGAGCAGCTGC+TGG 0.559222 1_1:+70786598 Msa0040560:CDS
GAGCTTTAACAAAGTAATTG+CGG 0.561626 1_1:-70792413 None:intergenic
TTCCCCACAGGATAATGTGT+CGG 0.562985 1_1:+70789070 Msa0040560:intron
AATGATGCTAGAGACAGAAA+GGG 0.564027 1_1:-70792647 None:intergenic
GCTGGAATTTGCTGATACAA+AGG 0.566935 1_1:+70786579 Msa0040560:CDS
AGATTAGAGGAGAAGATTCA+CGG 0.568629 1_1:+70789375 Msa0040560:CDS
AAGAAGAGTGTGGTGTTGGT+TGG 0.575072 1_1:-70784036 None:intergenic
GGAAGTGGTGAATGTGATTG+TGG 0.575329 1_1:+70784409 Msa0040560:CDS
CTTGAACCTACCTGTGGTGT+TGG 0.575698 1_1:-70789905 None:intergenic
CTTATGCGAGTTTCAGAAAG+GGG 0.578222 1_1:+70789563 Msa0040560:CDS
AAGAAGGGTGAAGAAGAGTG+TGG 0.578694 1_1:-70784046 None:intergenic
TGAATGGATCACAGAACTGG+AGG 0.580296 1_1:-70783930 None:intergenic
ATCATACCTCATTCTCTGCA+AGG 0.581209 1_1:-70788262 None:intergenic
ATGAGTAGCACGCTTAGCCG+CGG 0.581562 1_1:-70784279 None:intergenic
GCCGCACGTTCGTCGGCGGT+AGG 0.583158 1_1:-70784185 None:intergenic
CACGCTGCCCTGAAAGTCAG+AGG 0.583183 1_1:+70787203 Msa0040560:CDS
GATAAGTTGAGCGCGAGGCA+AGG 0.584876 1_1:+70791850 Msa0040560:CDS
CTTGTGTTGTACCAGGAAGG+GGG 0.585650 1_1:+70792527 Msa0040560:three_prime_UTR
AGTAGAGAGGAAGAATAAGA+GGG 0.586698 1_1:+70793049 Msa0040560:three_prime_UTR
AGAGATCCCAAATATTAGAT+GGG 0.587179 1_1:+70791362 Msa0040560:CDS
CAAGTTGGCCAATAAAGCCT+CGG 0.587308 1_1:+70789850 Msa0040560:CDS
CTCGCATAAGATATAACAGA+TGG 0.587389 1_1:-70789550 None:intergenic
ATTAGGACTTCTCGCAGTCA+AGG 0.590051 1_1:+70784544 Msa0040560:CDS
TGCTGCTATTCATTATGAAG+CGG 0.591200 1_1:+70786792 Msa0040560:CDS
ACAGTTCCATGTCAGACGAC+AGG 0.591963 1_1:-70792845 None:intergenic
GACGAAAGCATCTCTATCAA+AGG 0.592011 1_1:-70787745 None:intergenic
GGAACATCAACAACTAATTG+TGG 0.592529 1_1:+70786296 Msa0040560:CDS
ACTTCATGCTCAAACGGCAA+CGG 0.593141 1_1:-70784500 None:intergenic
AGCTACTGATTCAGACTGCA+AGG 0.598009 1_1:+70787255 Msa0040560:CDS
GTCTACAGGAGACAGGGCCG+AGG 0.599726 1_1:-70789867 None:intergenic
AAAGGTGTACCATAGGTCTA+CGG 0.599871 1_1:+70792970 Msa0040560:three_prime_UTR
AAGTGCCGCACGTTCGTCGG+CGG 0.602387 1_1:-70784189 None:intergenic
GTGTCGGATTTCATTAGGGT+AGG 0.603157 1_1:+70789086 Msa0040560:CDS
GGCCAATCTCCCCAATGCAA+AGG 0.606240 1_1:-70787797 None:intergenic
CCTACCTGTGGTGTTGGAGA+AGG 0.607565 1_1:-70789899 None:intergenic
CAGGACACACATAACCAAGC+TGG 0.608709 1_1:+70788146 Msa0040560:intron
ATGGAGTTTCAGAGACGCCA+AGG 0.609263 1_1:+70784080 Msa0040560:CDS
GCCTACCGCCGACGAACGTG+CGG 0.610300 1_1:+70784184 Msa0040560:CDS
CATGACAGGAGAAGGATGCA+AGG 0.611719 1_1:+70791334 Msa0040560:intron
GACGACAGGAATTAACGTCC+TGG 0.614857 1_1:-70792831 None:intergenic
CATTAATAGTCTCATTCGTA+GGG 0.616601 1_1:+70786386 Msa0040560:CDS
ACTTTCTGCACCCAGTAGAG+AGG 0.617802 1_1:+70793036 Msa0040560:three_prime_UTR
TAGCAAATACTATACTCGTA+CGG 0.618303 1_1:+70792880 Msa0040560:three_prime_UTR
ATGAATGCGTAGAGAAAAGG+AGG 0.621320 1_1:+70793006 Msa0040560:three_prime_UTR
CTGTGAGTACACAATTGCAC+AGG 0.621930 1_1:+70791601 Msa0040560:CDS
GAGTCAAGAAGCTTGAGCAG+TGG 0.623089 1_1:-70788194 None:intergenic
AAATGTCTGCCTTTGCATTG+GGG 0.623106 1_1:+70787788 Msa0040560:CDS
AATTCCAGCAAATGAACAAG+TGG 0.624346 1_1:-70786565 None:intergenic
GCTGGTATTGCACACAATGG+TGG 0.625726 1_1:+70788164 Msa0040560:CDS
ACGCTGCCCTGAAAGTCAGA+GGG 0.634516 1_1:+70787204 Msa0040560:CDS
GTGGTGAATGTGATTGTGGA+AGG 0.635578 1_1:+70784413 Msa0040560:CDS
TTTCGTGCAATGTTTGATGG+TGG 0.641730 1_1:+70790952 Msa0040560:CDS
GGAGTTCAAAGACTACAAGA+AGG 0.642933 1_1:+70789110 Msa0040560:CDS
CCATGAACGAGAGAGAAGAA+GGG 0.644551 1_1:-70784061 None:intergenic
GCGGTGCCGACGAGATCTGA+CGG 0.644725 1_1:-70784163 None:intergenic
CTATGGTTAACAGAATGGAA+TGG 0.644888 1_1:-70784011 None:intergenic
ACAGCAACTTGATGGTGCTG+TGG 0.647244 1_1:+70789820 Msa0040560:CDS
AAAGCATCTCTATCAAAGGT+CGG 0.649168 1_1:-70787741 None:intergenic
ATGACAGGAGAAGGATGCAA+GGG 0.650751 1_1:+70791335 Msa0040560:intron
TGGTGTTGGAGAAGGAGGAG+CGG 0.652625 1_1:-70789891 None:intergenic
TTTGCCCCTTCCTCTCGGAG+AGG 0.654825 1_1:-70784109 None:intergenic
GAATGAAGACGATCGAGCCG+CGG 0.657533 1_1:+70784262 Msa0040560:CDS
TTCTCGAGTCTACTTTCACG+TGG 0.661326 1_1:+70784240 Msa0040560:CDS
GTGAATGTGATTGTGGAAGG+AGG 0.669059 1_1:+70784416 Msa0040560:CDS
ATGAGAGGCAAACCTGACAT+GGG 0.671038 1_1:-70786457 None:intergenic
TAGGTTCACATTGTACAGAG+AGG 0.672210 1_1:+70787712 Msa0040560:intron
AAGGTCACTGCCTCTCCGAG+AGG 0.690613 1_1:+70784099 Msa0040560:CDS
AGCGGCGTCTACAGGAGACA+GGG 0.692565 1_1:-70789873 None:intergenic
ACTTTGATAAGTTGAGCGCG+AGG 0.693850 1_1:+70791845 Msa0040560:CDS
GCCTCTTTAAAAGATCAACA+AGG 0.700661 1_1:-70786338 None:intergenic
CAAGCTGGTATTGCACACAA+TGG 0.700835 1_1:+70788161 Msa0040560:CDS
ATGATGCTAGAGACAGAAAG+GGG 0.701274 1_1:-70792646 None:intergenic
GGAAGACCGTCAGATCTCGT+CGG 0.712275 1_1:+70784157 Msa0040560:CDS
GTAGAGAGGAAGAATAAGAG+GGG 0.716782 1_1:+70793050 Msa0040560:three_prime_UTR
CAACAACTAATTGTGGACAG+TGG 0.718009 1_1:+70786303 Msa0040560:CDS
TGAACGCAATCAGTAACAGG+CGG 0.719381 1_1:-70784473 None:intergenic
CGTGAAAGTAGACTCGAGAA+CGG 0.732007 1_1:-70784237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATTTTATAAAATTAATT+TGG + chr1_1:70785156-70785175 Msa0040560:intron 10.0%
!! ATAGGTTTAAATAATAAATT+GGG + chr1_1:70785957-70785976 Msa0040560:intron 10.0%
!!! CAATTATATCTTTTTTTAAA+GGG - chr1_1:70786239-70786258 None:intergenic 10.0%
!!! ACAATTATATCTTTTTTTAA+AGG - chr1_1:70786240-70786259 None:intergenic 10.0%
!!! TTTTTTTTCTTAACATTATA+TGG + chr1_1:70786510-70786529 Msa0040560:intron 10.0%
!! TCAAATTTAATAAAAAAGAA+AGG + chr1_1:70789966-70789985 Msa0040560:intron 10.0%
!! CAAATTTAATAAAAAAGAAA+GGG + chr1_1:70789967-70789986 Msa0040560:intron 10.0%
!! AAATTTAATAAAAAAGAAAG+GGG + chr1_1:70789968-70789987 Msa0040560:intron 10.0%
!!! TATTTAAGTTTTTCTAATAT+TGG + chr1_1:70790306-70790325 Msa0040560:intron 10.0%
!!! TTTATTATAAATAGATTTTG+TGG + chr1_1:70792193-70792212 Msa0040560:intron 10.0%
!!! TTTTATTTTTCCTATTAAAC+AGG + chr1_1:70784888-70784907 Msa0040560:intron 15.0%
!! CATAGGTTTAAATAATAAAT+TGG + chr1_1:70785956-70785975 Msa0040560:intron 15.0%
!! CATATATATAATACAAAGTA+TGG - chr1_1:70786182-70786201 None:intergenic 15.0%
!! CATACTTTGTATTATATATA+TGG + chr1_1:70786180-70786199 Msa0040560:intron 15.0%
!! AAATGATGAAAATAAAATTC+AGG + chr1_1:70786645-70786664 Msa0040560:CDS 15.0%
!! AAACCTAAAATTTATCATTA+CGG - chr1_1:70786832-70786851 None:intergenic 15.0%
!! ATATAAACAAATTCAAGATA+CGG - chr1_1:70787085-70787104 None:intergenic 15.0%
!!! TGTTTTATTCAACAAAAAAA+AGG - chr1_1:70787496-70787515 None:intergenic 15.0%
!! AAAAAAAAAAACAATAACCT+GGG - chr1_1:70787821-70787840 None:intergenic 15.0%
!! AAAAAAAAAAAACAATAACC+TGG - chr1_1:70787822-70787841 None:intergenic 15.0%
!! ACAAAATTGAATTATAAACA+AGG - chr1_1:70787849-70787868 None:intergenic 15.0%
!!! TATAATTCAATTTTGTAAGT+TGG + chr1_1:70787853-70787872 Msa0040560:intron 15.0%
!!! ATAATTCAATTTTGTAAGTT+GGG + chr1_1:70787854-70787873 Msa0040560:intron 15.0%
!! TATACAATGTTTACATTTAT+AGG + chr1_1:70788061-70788080 Msa0040560:intron 15.0%
!! AAAGGATTGATATAAAAAAA+AGG - chr1_1:70790089-70790108 None:intergenic 15.0%
!!! TCTGGTTTTTTTTTTTTTTT+TGG - chr1_1:70790532-70790551 None:intergenic 15.0%
!! ACATATCTTAATTGTTTATT+TGG + chr1_1:70791471-70791490 Msa0040560:intron 15.0%
!!! ATTTTTTTTCTAGTTCTTTT+TGG + chr1_1:70792034-70792053 Msa0040560:intron 15.0%
!!! TTTTTTTTCTAGTTCTTTTT+GGG + chr1_1:70792035-70792054 Msa0040560:intron 15.0%
!! AAATCATATGATATTTAGAA+TGG + chr1_1:70792302-70792321 Msa0040560:intron 15.0%
!! TCATAGATATAGTAAATATA+CGG + chr1_1:70792674-70792693 Msa0040560:three_prime_UTR 15.0%
!! AATCAAAATCAGATAGAAAA+TGG - chr1_1:70783978-70783997 None:intergenic 20.0%
!!! CATTTTTTAAAGTTTGTGTA+TGG - chr1_1:70784806-70784825 None:intergenic 20.0%
!! ATAGGAAAAATAAAACAGAA+CGG - chr1_1:70784883-70784902 None:intergenic 20.0%
!! TATTTCATTATGACTGTATA+TGG - chr1_1:70785450-70785469 None:intergenic 20.0%
!!! TTCTCTGAAAAAAAACATAT+CGG + chr1_1:70785698-70785717 Msa0040560:intron 20.0%
!!! GAAAAAATCAAATGAGTTTT+TGG + chr1_1:70785875-70785894 Msa0040560:intron 20.0%
!!! AAACCGTAATGATAAATTTT+AGG + chr1_1:70786826-70786845 Msa0040560:intron 20.0%
!! TATAAACAAATTCAAGATAC+GGG - chr1_1:70787084-70787103 None:intergenic 20.0%
!! GTCAAGAAACAAAAAAAATT+GGG - chr1_1:70787109-70787128 None:intergenic 20.0%
!! TGTCAAGAAACAAAAAAAAT+TGG - chr1_1:70787110-70787129 None:intergenic 20.0%
!!! TCTAGAATAGTTGATTATAT+AGG + chr1_1:70787612-70787631 Msa0040560:intron 20.0%
!! GCAAATCTAAAAATCTATTA+CGG - chr1_1:70787931-70787950 None:intergenic 20.0%
!!! ACATTTTTTTTTCCAATTTC+AGG + chr1_1:70788127-70788146 Msa0040560:intron 20.0%
!! TGTCTTGTGATATATTATTA+TGG - chr1_1:70788388-70788407 None:intergenic 20.0%
!! CCATTATTTAAATTTAAGAG+TGG - chr1_1:70789005-70789024 None:intergenic 20.0%
!! CCACTCTTAAATTTAAATAA+TGG + chr1_1:70789002-70789021 Msa0040560:intron 20.0%
!! GGGAAAAATAAAACAAAAAA+GGG - chr1_1:70789055-70789074 None:intergenic 20.0%
!! GAAATATAACAAGTACAAAA+AGG - chr1_1:70789733-70789752 None:intergenic 20.0%
!!! TTTCCTTTTGATTTTAACAT+AGG + chr1_1:70790051-70790070 Msa0040560:intron 20.0%
!! TTTCCTATGTTAAAATCAAA+AGG - chr1_1:70790057-70790076 None:intergenic 20.0%
!!! ATATCAATCCTTTTTAGAAA+AGG + chr1_1:70790096-70790115 Msa0040560:intron 20.0%
!!! TATCAATCCTTTTTAGAAAA+GGG + chr1_1:70790097-70790116 Msa0040560:intron 20.0%
!! TTATAAACTATTCTTCTTAC+AGG + chr1_1:70790687-70790706 Msa0040560:intron 20.0%
!!! CAATAATGGTTTTATTCTTT+TGG - chr1_1:70791104-70791123 None:intergenic 20.0%
!! AAAACATGTTAAGTCAATAA+TGG - chr1_1:70791118-70791137 None:intergenic 20.0%
!! ATCTTAATTGTTTATTTGGT+CGG + chr1_1:70791475-70791494 Msa0040560:intron 20.0%
!! ATATATCTGTGTTTGTAAAA+TGG + chr1_1:70791693-70791712 Msa0040560:intron 20.0%
!! TATATCTGTGTTTGTAAAAT+GGG + chr1_1:70791694-70791713 Msa0040560:intron 20.0%
!! TTTATACTGAACTAATAACT+TGG + chr1_1:70791913-70791932 Msa0040560:intron 20.0%
!! AATGCACAGTTTATTTATAA+TGG + chr1_1:70792269-70792288 Msa0040560:intron 20.0%
! TTGGAAATGAAAGATTTGAA+TGG - chr1_1:70783949-70783968 None:intergenic 25.0%
! TAGAAATGAGAAAAAGAAGT+TGG + chr1_1:70784701-70784720 Msa0040560:intron 25.0%
!!! AGTTTGTTTGTTGTAAACTT+TGG + chr1_1:70785232-70785251 Msa0040560:intron 25.0%
! AAGTGAAAAATTTCAGTATG+GGG - chr1_1:70785272-70785291 None:intergenic 25.0%
! GAAGTGAAAAATTTCAGTAT+GGG - chr1_1:70785273-70785292 None:intergenic 25.0%
! AGAAGTGAAAAATTTCAGTA+TGG - chr1_1:70785274-70785293 None:intergenic 25.0%
! AAAATAGGTACTATCAGAAA+AGG - chr1_1:70785331-70785350 None:intergenic 25.0%
! GATGTGATTTCAGTTAAAAT+AGG - chr1_1:70785346-70785365 None:intergenic 25.0%
! TACAGTCATAATGAAATACA+AGG + chr1_1:70785452-70785471 Msa0040560:intron 25.0%
!! GTTATTCGTGATAATGTATA+TGG + chr1_1:70785510-70785529 Msa0040560:intron 25.0%
!! TCTCTGAAAAAAAACATATC+GGG + chr1_1:70785699-70785718 Msa0040560:intron 25.0%
! AAAAAAAACATATCGGGTTT+GGG + chr1_1:70785705-70785724 Msa0040560:intron 25.0%
! TGTTAGAAAAAAAGAAGTGA+TGG + chr1_1:70785734-70785753 Msa0040560:intron 25.0%
! GTTAGAAAAAAAGAAGTGAT+GGG + chr1_1:70785735-70785754 Msa0040560:intron 25.0%
! TTAGAAAAAAAGAAGTGATG+GGG + chr1_1:70785736-70785755 Msa0040560:intron 25.0%
! AATACTAAGAGAAAAATCCA+TGG + chr1_1:70785838-70785857 Msa0040560:intron 25.0%
! GGTTTAAATAATAAATTGGG+TGG + chr1_1:70785960-70785979 Msa0040560:intron 25.0%
! GCAAAAATCAATCATGTAAT+TGG - chr1_1:70786066-70786085 None:intergenic 25.0%
!!! TACATGATTGATTTTTGCTT+TGG + chr1_1:70786068-70786087 Msa0040560:intron 25.0%
!!! CTTTTAAAGAGGCATAATAA+TGG + chr1_1:70786348-70786367 Msa0040560:CDS 25.0%
! TTGTATATTTAGACTCAGTT+TGG + chr1_1:70786486-70786505 Msa0040560:intron 25.0%
!! ATTATATGGATTTTCTGTGT+AGG + chr1_1:70786524-70786543 Msa0040560:intron 25.0%
! GATGAAAATAAAATTCAGGT+AGG + chr1_1:70786649-70786668 Msa0040560:intron 25.0%
! AATGAATTGGATTGTATTAC+AGG + chr1_1:70786899-70786918 Msa0040560:intron 25.0%
! AGAACCTCTTTCTTTATATT+CGG - chr1_1:70786957-70786976 None:intergenic 25.0%
! ATAAACAAATTCAAGATACG+GGG - chr1_1:70787083-70787102 None:intergenic 25.0%
!!! TATTTTTGTACTTGTACTTG+AGG + chr1_1:70787371-70787390 Msa0040560:intron 25.0%
!! ATTTTTGTACTTGTACTTGA+GGG + chr1_1:70787372-70787391 Msa0040560:intron 25.0%
! TAAAACAACTGAACATTAGT+TGG + chr1_1:70787509-70787528 Msa0040560:intron 25.0%
! AAAACAACTGAACATTAGTT+GGG + chr1_1:70787510-70787529 Msa0040560:intron 25.0%
! TAATACAAAACAACCAAACA+TGG - chr1_1:70787560-70787579 None:intergenic 25.0%
! ATCTAAAAATCTATTACGGA+AGG - chr1_1:70787927-70787946 None:intergenic 25.0%
! GGAAAAAAAAATGTCAATCA+TGG - chr1_1:70788121-70788140 None:intergenic 25.0%
!! CCAAAACATTTAAGATTTAG+AGG - chr1_1:70788432-70788451 None:intergenic 25.0%
!! CCTCTAAATCTTAAATGTTT+TGG + chr1_1:70788429-70788448 Msa0040560:intron 25.0%
!!! GTTTTGGAATTTTGCTTTTT+TGG + chr1_1:70788445-70788464 Msa0040560:intron 25.0%
!!! TATAGGCTTTAAGAGTAAAT+AGG + chr1_1:70788553-70788572 Msa0040560:intron 25.0%
!!! ATAGGCTTTAAGAGTAAATA+GGG + chr1_1:70788554-70788573 Msa0040560:intron 25.0%
! AAATACTAGACATAAGGATT+GGG - chr1_1:70788768-70788787 None:intergenic 25.0%
!! TAAATCATTTTATCCAAGCA+GGG - chr1_1:70788977-70788996 None:intergenic 25.0%
! GGGGAAAAATAAAACAAAAA+AGG - chr1_1:70789056-70789075 None:intergenic 25.0%
!! ATTATAGTTCCCTTTTATAC+AGG - chr1_1:70789217-70789236 None:intergenic 25.0%
! ATGTGAATAGTTATAGCATT+AGG + chr1_1:70789250-70789269 Msa0040560:intron 25.0%
! TGTGAATAGTTATAGCATTA+GGG + chr1_1:70789251-70789270 Msa0040560:intron 25.0%
! ACCTATAAGAAGAAAATTGA+CGG - chr1_1:70789524-70789543 None:intergenic 25.0%
!! AGAATTTTTATTGAACACCA+TGG + chr1_1:70789644-70789663 Msa0040560:CDS 25.0%
! ATCTTCGTAAAATACTTTCA+TGG + chr1_1:70789674-70789693 Msa0040560:intron 25.0%
! TCTTCGTAAAATACTTTCAT+GGG + chr1_1:70789675-70789694 Msa0040560:intron 25.0%
!!! ATCAATCCTTTTTAGAAAAG+GGG + chr1_1:70790098-70790117 Msa0040560:intron 25.0%
! AAGTACATAAAACAAATGGT+AGG - chr1_1:70790283-70790302 None:intergenic 25.0%
!!! ACCATTTGTTTTATGTACTT+TGG + chr1_1:70790283-70790302 Msa0040560:intron 25.0%
! ACCAAAGTACATAAAACAAA+TGG - chr1_1:70790287-70790306 None:intergenic 25.0%
! GATGTCTAGCTAAAAATATA+TGG + chr1_1:70790455-70790474 Msa0040560:intron 25.0%
!!! ATCAGATGCTCATTTTTAAA+TGG - chr1_1:70790482-70790501 None:intergenic 25.0%
! ATTTAAAAATGAGCATCTGA+TGG + chr1_1:70790481-70790500 Msa0040560:intron 25.0%
!! AAGACATTGATTATAATGTC+TGG - chr1_1:70790550-70790569 None:intergenic 25.0%
! TTCAACCAAAAATGTAACAT+CGG - chr1_1:70790752-70790771 None:intergenic 25.0%
! AACAAAGAAAAGAGATTAAC+CGG - chr1_1:70790878-70790897 None:intergenic 25.0%
!!! GGAAAAATATAATTTGGTGT+GGG - chr1_1:70791003-70791022 None:intergenic 25.0%
! AAACTTCCCATCTAATATTT+GGG - chr1_1:70791371-70791390 None:intergenic 25.0%
! AAAACTTCCCATCTAATATT+TGG - chr1_1:70791372-70791391 None:intergenic 25.0%
! TGATCCAGTATATATAAATC+TGG - chr1_1:70791504-70791523 None:intergenic 25.0%
! CATTAGAATATAAACTACCA+AGG - chr1_1:70791992-70792011 None:intergenic 25.0%
! TTTAGACAAAGTTCATTCAA+AGG + chr1_1:70792160-70792179 Msa0040560:intron 25.0%
! TTAGACAAAGTTCATTCAAA+GGG + chr1_1:70792161-70792180 Msa0040560:intron 25.0%
! TAAGAAAAAACAATTCGTGA+AGG - chr1_1:70792700-70792719 None:intergenic 25.0%
! TTTCTTATGCAATATTGTGA+TGG + chr1_1:70792713-70792732 Msa0040560:three_prime_UTR 25.0%
! AACAATTATCATATGAGGAA+TGG - chr1_1:70792741-70792760 None:intergenic 25.0%
! ACGTTAACAATTATCATATG+AGG - chr1_1:70792746-70792765 None:intergenic 25.0%
TAAGTTAGACGAAGAATTAC+CGG + chr1_1:70784136-70784155 Msa0040560:CDS 30.0%
TACAGTATGTCCTGTTTAAT+AGG - chr1_1:70784901-70784920 None:intergenic 30.0%
ACTGTATTGAATGATCTATG+TGG + chr1_1:70784915-70784934 Msa0040560:intron 30.0%
!! GAATTTTGAGTGTGTCATAT+TGG + chr1_1:70784937-70784956 Msa0040560:intron 30.0%
TCTTGAATACAACATAACTG+TGG - chr1_1:70784984-70785003 None:intergenic 30.0%
ACAGTTATGTTGTATTCAAG+AGG + chr1_1:70784983-70785002 Msa0040560:intron 30.0%
CAGTTATGTTGTATTCAAGA+GGG + chr1_1:70784984-70785003 Msa0040560:intron 30.0%
!! ATCTGTTTTGAATGTACTGT+TGG + chr1_1:70785059-70785078 Msa0040560:intron 30.0%
TACAACAAACAAACTTTCAG+AGG - chr1_1:70785227-70785246 None:intergenic 30.0%
! CTTATGGAATTGATTCACAA+AGG - chr1_1:70785540-70785559 None:intergenic 30.0%
! ATTTTTCTTAATGCCGAACA+AGG + chr1_1:70785611-70785630 Msa0040560:intron 30.0%
! ATTTTTCTCTATGCTGTACA+AGG + chr1_1:70785658-70785677 Msa0040560:intron 30.0%
GAAAAAAAACATATCGGGTT+TGG + chr1_1:70785704-70785723 Msa0040560:intron 30.0%
!!! ACTCATTTGATTTTTTCGCT+TGG - chr1_1:70785872-70785891 None:intergenic 30.0%
AGAATCTACTATCTCGTAAT+TGG - chr1_1:70785905-70785924 None:intergenic 30.0%
TTAAAGTGAATGTCTCTCAT+AGG + chr1_1:70785939-70785958 Msa0040560:intron 30.0%
AAATAATAAATTGGGTGGTC+TGG + chr1_1:70785965-70785984 Msa0040560:intron 30.0%
GTTGACAAGTGAATTGATAA+AGG - chr1_1:70786126-70786145 None:intergenic 30.0%
ATTTCAAATAAGACGTTAGC+TGG - chr1_1:70786263-70786282 None:intergenic 30.0%
ACAATTAGTTGTTGATGTTC+CGG - chr1_1:70786297-70786316 None:intergenic 30.0%
!! ACCTTGTTGATCTTTTAAAG+AGG + chr1_1:70786337-70786356 Msa0040560:CDS 30.0%
CATTAATAGTCTCATTCGTA+GGG + chr1_1:70786386-70786405 Msa0040560:CDS 30.0%
AATATACAATAGTGCATGAG+AGG - chr1_1:70786475-70786494 None:intergenic 30.0%
AATTGGATTGTATTACAGGT+TGG + chr1_1:70786903-70786922 Msa0040560:intron 30.0%
ATCTCCGAATATAAAGAAAG+AGG + chr1_1:70786950-70786969 Msa0040560:CDS 30.0%
AACCAGTTATTGGATTACTT+AGG + chr1_1:70786994-70787013 Msa0040560:CDS 30.0%
TACCTAAGTAATCCAATAAC+TGG - chr1_1:70786999-70787018 None:intergenic 30.0%
! TTTTTGTACTTGTACTTGAG+GGG + chr1_1:70787373-70787392 Msa0040560:intron 30.0%
AAACAACTGAACATTAGTTG+GGG + chr1_1:70787511-70787530 Msa0040560:intron 30.0%
TTGCTAAAATAACAACTCCA+TGG + chr1_1:70787588-70787607 Msa0040560:intron 30.0%
!! AATCAACTATTCTAGAACCA+TGG - chr1_1:70787608-70787627 None:intergenic 30.0%
ATTTCTCTAAGTTGTACATC+AGG - chr1_1:70787772-70787791 None:intergenic 30.0%
! GTGATTCTCTTTTAGATTCA+TGG + chr1_1:70787880-70787899 Msa0040560:intron 30.0%
TACATCAATTAACGAGAAGA+TGG - chr1_1:70787972-70787991 None:intergenic 30.0%
TCGTTAATTGATGTATCTAG+TGG + chr1_1:70787977-70787996 Msa0040560:intron 30.0%
CGTTAATTGATGTATCTAGT+GGG + chr1_1:70787978-70787997 Msa0040560:intron 30.0%
CTAAGATGAGTTATGTTCTT+AGG - chr1_1:70788010-70788029 None:intergenic 30.0%
AAATGTCAATCATGGCAAAA+GGG - chr1_1:70788113-70788132 None:intergenic 30.0%
AAAATGTCAATCATGGCAAA+AGG - chr1_1:70788114-70788133 None:intergenic 30.0%
AAGCTTCTTGACTCAAAAAA+TGG + chr1_1:70788203-70788222 Msa0040560:CDS 30.0%
AGCTTCTTGACTCAAAAAAT+GGG + chr1_1:70788204-70788223 Msa0040560:CDS 30.0%
AGATTTAGAGGTCAATCATT+TGG - chr1_1:70788420-70788439 None:intergenic 30.0%
TAAACACAAAAAAGCCGTTT+GGG - chr1_1:70788498-70788517 None:intergenic 30.0%
ATAAACACAAAAAAGCCGTT+TGG - chr1_1:70788499-70788518 None:intergenic 30.0%
! TTTTGTGTTTATAAGCCCTT+CGG + chr1_1:70788507-70788526 Msa0040560:intron 30.0%
AAAGCCTATAAAACAACGTT+CGG - chr1_1:70788543-70788562 None:intergenic 30.0%
!! TAGGCTTTAAGAGTAAATAG+GGG + chr1_1:70788555-70788574 Msa0040560:intron 30.0%
GTTCTTCAGATTCAATAGAA+AGG - chr1_1:70788674-70788693 None:intergenic 30.0%
AATAACATTTGAGAGAGAGT+TGG - chr1_1:70788742-70788761 None:intergenic 30.0%
GAAATACTAGACATAAGGAT+TGG - chr1_1:70788769-70788788 None:intergenic 30.0%
ACTGACAATGTTGTATGATA+CGG - chr1_1:70788866-70788885 None:intergenic 30.0%
! GTAAATCATTTTATCCAAGC+AGG - chr1_1:70788978-70788997 None:intergenic 30.0%
!!! TTTGTTTTATTTTTCCCCAC+AGG + chr1_1:70789058-70789077 Msa0040560:intron 30.0%
ATAATGTGTCGGATTTCATT+AGG + chr1_1:70789081-70789100 Msa0040560:CDS 30.0%
TAATGTGTCGGATTTCATTA+GGG + chr1_1:70789082-70789101 Msa0040560:CDS 30.0%
TGCTAAAACTAGGAATAAAG+AGG - chr1_1:70789160-70789179 None:intergenic 30.0%
CTGAAATAAGTGCTAAAACT+AGG - chr1_1:70789170-70789189 None:intergenic 30.0%
!!! CTAGTTTTAGCACTTATTTC+AGG + chr1_1:70789168-70789187 Msa0040560:intron 30.0%
TTATAGCATTAGGGATTGAA+CGG + chr1_1:70789260-70789279 Msa0040560:intron 30.0%
GGGGAAAAATAGATTCTTAT+TGG + chr1_1:70789281-70789300 Msa0040560:intron 30.0%
TATATTGACCTATGTGGATA+TGG + chr1_1:70789307-70789326 Msa0040560:intron 30.0%
AATAGAAACCATATCCACAT+AGG - chr1_1:70789318-70789337 None:intergenic 30.0%
! CTCTAATCTTTTCAATGTCT+TGG - chr1_1:70789364-70789383 None:intergenic 30.0%
CAAGACATTGAAAAGATTAG+AGG + chr1_1:70789362-70789381 Msa0040560:CDS 30.0%
TACATCAACTATCAGTTCTA+TGG + chr1_1:70789475-70789494 Msa0040560:intron 30.0%
ACATCAACTATCAGTTCTAT+GGG + chr1_1:70789476-70789495 Msa0040560:intron 30.0%
! TCCGTCAATTTTCTTCTTAT+AGG + chr1_1:70789520-70789539 Msa0040560:intron 30.0%
ATTTGAACAGAAAGATTGTG+AGG - chr1_1:70789952-70789971 None:intergenic 30.0%
TTTATGATGTGAATAGGCAT+CGG + chr1_1:70789993-70790012 Msa0040560:intron 30.0%
!! TAAAGACCCCTTTTCTAAAA+AGG - chr1_1:70790107-70790126 None:intergenic 30.0%
!!! TTTTTCCTTTTGATTTCAGC+AGG + chr1_1:70790177-70790196 Msa0040560:intron 30.0%
!!! TTTTCCTTTTGATTTCAGCA+GGG + chr1_1:70790178-70790197 Msa0040560:intron 30.0%
!! AAAAGGGTTGATATAACCAA+AGG - chr1_1:70790217-70790236 None:intergenic 30.0%
TATACAAAATGTGCGTTGAA+AGG - chr1_1:70790253-70790272 None:intergenic 30.0%
TTTGGTAGAATAATAACGTC+TGG - chr1_1:70790514-70790533 None:intergenic 30.0%
TCGCTTTGTCTAAGTAATTA+TGG + chr1_1:70790630-70790649 Msa0040560:intron 30.0%
TTCTTCTTACAGGTTTACTT+AGG + chr1_1:70790697-70790716 Msa0040560:intron 30.0%
! ATTGTCCGATGTTACATTTT+TGG + chr1_1:70790744-70790763 Msa0040560:CDS 30.0%
!!! GATGTTACATTTTTGGTTGA+AGG + chr1_1:70790751-70790770 Msa0040560:CDS 30.0%
!!! GTTTTAAGAACGAAACAATG+TGG - chr1_1:70790793-70790812 None:intergenic 30.0%
AGCTACCTTCTCTTAAAATA+TGG + chr1_1:70790821-70790840 Msa0040560:intron 30.0%
!! CAGTACCATATTTTAAGAGA+AGG - chr1_1:70790829-70790848 None:intergenic 30.0%
! TAATCTCTTTTCTTTGTTGC+AGG + chr1_1:70790880-70790899 Msa0040560:intron 30.0%
!! AATGTTTGATGGTGGTTATA+GGG + chr1_1:70790960-70790979 Msa0040560:CDS 30.0%
! GGGAAAAATATAATTTGGTG+TGG - chr1_1:70791004-70791023 None:intergenic 30.0%
GGGAAGGGAAAAATATAATT+TGG - chr1_1:70791009-70791028 None:intergenic 30.0%
! TTGCAGTATGCTTATTTCTT+GGG - chr1_1:70791044-70791063 None:intergenic 30.0%
TTTATGTCACTGATGTACAT+CGG + chr1_1:70791298-70791317 Msa0040560:intron 30.0%
TAGAGATCCCAAATATTAGA+TGG + chr1_1:70791361-70791380 Msa0040560:CDS 30.0%
AGAGATCCCAAATATTAGAT+GGG + chr1_1:70791362-70791381 Msa0040560:CDS 30.0%
!!! AAGTTTTTGAGTTGATGATG+AGG + chr1_1:70791385-70791404 Msa0040560:CDS 30.0%
GCATCCAGATTTATATATAC+TGG + chr1_1:70791497-70791516 Msa0040560:intron 30.0%
! GCTGATCAATATCTTTTAGA+TGG + chr1_1:70791566-70791585 Msa0040560:CDS 30.0%
! TGCATGCATTCTTTTTATCT+TGG + chr1_1:70791819-70791838 Msa0040560:CDS 30.0%
!!! CTTCATGTTTGTTGTAGTTT+TGG + chr1_1:70791959-70791978 Msa0040560:intron 30.0%
AGAATATAAACTACCAAGGT+CGG - chr1_1:70791988-70792007 None:intergenic 30.0%
CTAGAAAAAAAATCAGTGCA+CGG - chr1_1:70792027-70792046 None:intergenic 30.0%
ATGTGTGCTCAATATATAGT+TGG + chr1_1:70792077-70792096 Msa0040560:intron 30.0%
! GAGCTTTAACAAAGTAATTG+CGG - chr1_1:70792416-70792435 None:intergenic 30.0%
CTTTCTTTCTTTCTTTGATG+TGG + chr1_1:70792617-70792636 Msa0040560:three_prime_UTR 30.0%
TTCACAAACAATTAAACTGC+TGG + chr1_1:70792798-70792817 Msa0040560:three_prime_UTR 30.0%
TCACAAACAATTAAACTGCT+GGG + chr1_1:70792799-70792818 Msa0040560:three_prime_UTR 30.0%
ATTAAACTGCTGGGTAATTT+AGG + chr1_1:70792808-70792827 Msa0040560:three_prime_UTR 30.0%
TAGCAAATACTATACTCGTA+CGG + chr1_1:70792880-70792899 Msa0040560:three_prime_UTR 30.0%
! TGTATGCGCTTGTTAAAAAA+AGG + chr1_1:70792952-70792971 Msa0040560:three_prime_UTR 30.0%
! GTTAAAAAAAGGTGTACCAT+AGG + chr1_1:70792963-70792982 Msa0040560:three_prime_UTR 30.0%
ATTTGAATGGATCACAGAAC+TGG - chr1_1:70783936-70783955 None:intergenic 35.0%
AGATAGAAAATGGCGAGAAT+TGG - chr1_1:70783968-70783987 None:intergenic 35.0%
CTATGGTTAACAGAATGGAA+TGG - chr1_1:70784014-70784033 None:intergenic 35.0%
ATGTCTGTGTGTGAATTTAC+TGG + chr1_1:70784370-70784389 Msa0040560:intron 35.0%
TGAAGATGCTTAATCAAAGC+CGG - chr1_1:70784449-70784468 None:intergenic 35.0%
TTCTCAACTTCATGCTCAAA+CGG - chr1_1:70784509-70784528 None:intergenic 35.0%
TTTGAGCATGAAGTTGAGAA+AGG + chr1_1:70784509-70784528 Msa0040560:CDS 35.0%
TTGAGCATGAAGTTGAGAAA+GGG + chr1_1:70784510-70784529 Msa0040560:CDS 35.0%
AAGAAGTTGGCATATTAGAG+TGG + chr1_1:70784714-70784733 Msa0040560:intron 35.0%
AGAAGTTGGCATATTAGAGT+GGG + chr1_1:70784715-70784734 Msa0040560:intron 35.0%
TTATATCAACATCCACTGTC+AGG + chr1_1:70785024-70785043 Msa0040560:intron 35.0%
TGTCATATTTCATTCCAGAG+AGG + chr1_1:70785084-70785103 Msa0040560:intron 35.0%
AGATCACTAATGCATGTACT+TGG + chr1_1:70785109-70785128 Msa0040560:intron 35.0%
GATCACTAATGCATGTACTT+GGG + chr1_1:70785110-70785129 Msa0040560:intron 35.0%
TTTCACTTCTACTCAAACAG+TGG + chr1_1:70785284-70785303 Msa0040560:intron 35.0%
AAGGGCAGCTAAAAGTTAAA+TGG - chr1_1:70786221-70786240 None:intergenic 35.0%
! TTTGAAATGCTTTCTACAGC+CGG + chr1_1:70786275-70786294 Msa0040560:intron 35.0%
GGAACATCAACAACTAATTG+TGG + chr1_1:70786296-70786315 Msa0040560:CDS 35.0%
AAGATCAACAAGGTGTGTTA+AGG - chr1_1:70786331-70786350 None:intergenic 35.0%
! GCCTCTTTAAAAGATCAACA+AGG - chr1_1:70786341-70786360 None:intergenic 35.0%
CCTACGAATGAGACTATTAA+TGG - chr1_1:70786388-70786407 None:intergenic 35.0%
CCATTAATAGTCTCATTCGT+AGG + chr1_1:70786385-70786404 Msa0040560:CDS 35.0%
! TATGGATTTTCTGTGTAGGA+TGG + chr1_1:70786528-70786547 Msa0040560:intron 35.0%
AATTCCAGCAAATGAACAAG+TGG - chr1_1:70786568-70786587 None:intergenic 35.0%
AATAAAATTCAGGTAGGCAG+TGG + chr1_1:70786655-70786674 Msa0040560:intron 35.0%
TGCTGCTATTCATTATGAAG+CGG + chr1_1:70786792-70786811 Msa0040560:CDS 35.0%
CTATTCATTATGAAGCGGTA+TGG + chr1_1:70786797-70786816 Msa0040560:intron 35.0%
ATTATGAAGCGGTATGGATA+AGG + chr1_1:70786803-70786822 Msa0040560:intron 35.0%
GTCTATATACATCTCTCATC+TGG + chr1_1:70786869-70786888 Msa0040560:intron 35.0%
ATCTGGCATATGCAATGAAT+TGG + chr1_1:70786886-70786905 Msa0040560:intron 35.0%
AAGAAAGAGGTTCTATTTGC+TGG + chr1_1:70786963-70786982 Msa0040560:CDS 35.0%
CTTAGGTATAATATCAGCTC+TGG + chr1_1:70787011-70787030 Msa0040560:intron 35.0%
AAGGGGAAATGCAATAGAAT+GGG - chr1_1:70787054-70787073 None:intergenic 35.0%
GTAAGGATAAACTTCACAAC+CGG + chr1_1:70787277-70787296 Msa0040560:intron 35.0%
! AAATTTTCCACTATCCCTTC+CGG - chr1_1:70787299-70787318 None:intergenic 35.0%
CCAAACTTGAAAGTTTGACT+TGG - chr1_1:70787332-70787351 None:intergenic 35.0%
!! CCAAGTCAAACTTTCAAGTT+TGG + chr1_1:70787329-70787348 Msa0040560:intron 35.0%
!! AATCCCTCACTTCACTTTTA+TGG + chr1_1:70787420-70787439 Msa0040560:intron 35.0%
CAACCATAAAAGTGAAGTGA+GGG - chr1_1:70787426-70787445 None:intergenic 35.0%
ACAACCATAAAAGTGAAGTG+AGG - chr1_1:70787427-70787446 None:intergenic 35.0%
TCTTGAGTAGTTAAGAGAGA+TGG + chr1_1:70787448-70787467 Msa0040560:intron 35.0%
AACAACTGAACATTAGTTGG+GGG + chr1_1:70787512-70787531 Msa0040560:intron 35.0%
ACCAACTACAATTCCATGTT+TGG + chr1_1:70787544-70787563 Msa0040560:intron 35.0%
ACCAAACATGGAATTGTAGT+TGG - chr1_1:70787548-70787567 None:intergenic 35.0%
AATGTATGATGTACCATCAC+AGG - chr1_1:70787645-70787664 None:intergenic 35.0%
AATGTGAACCTAAACAAACC+AGG - chr1_1:70787704-70787723 None:intergenic 35.0%
! AAAGCATCTCTATCAAAGGT+CGG - chr1_1:70787744-70787763 None:intergenic 35.0%
ATCAATTAACGAGAAGATGG+AGG - chr1_1:70787969-70787988 None:intergenic 35.0%
!!! AATGCTGCTTTTGCTCTTTA+TGG + chr1_1:70788239-70788258 Msa0040560:CDS 35.0%
! TTCGGTTTGTAATTCCCAAA+CGG + chr1_1:70788481-70788500 Msa0040560:intron 35.0%
TTTGTGTTTATAAGCCCTTC+GGG + chr1_1:70788508-70788527 Msa0040560:intron 35.0%
!! TATCCCGAACGTTGTTTTAT+AGG + chr1_1:70788536-70788555 Msa0040560:intron 35.0%
AAGCCTATAAAACAACGTTC+GGG - chr1_1:70788542-70788561 None:intergenic 35.0%
!! AGGCTTTAAGAGTAAATAGG+GGG + chr1_1:70788556-70788575 Msa0040560:intron 35.0%
!! AACATTGATGACTGCTCTTT+TGG - chr1_1:70788583-70788602 None:intergenic 35.0%
! GTTTTGCCCATAGTTTTTCT+TGG + chr1_1:70788600-70788619 Msa0040560:intron 35.0%
GCAAAGCCAAGAAAAACTAT+GGG - chr1_1:70788609-70788628 None:intergenic 35.0%
AGCAAAGCCAAGAAAAACTA+TGG - chr1_1:70788610-70788629 None:intergenic 35.0%
AGAAAGGAGAGTAGATATGA+TGG - chr1_1:70788658-70788677 None:intergenic 35.0%
! ACCACCTATTTTCTACAAAC+AGG + chr1_1:70788709-70788728 Msa0040560:intron 35.0%
ACCTGTTTGTAGAAAATAGG+TGG - chr1_1:70788713-70788732 None:intergenic 35.0%
AGCACCTGTTTGTAGAAAAT+AGG - chr1_1:70788716-70788735 None:intergenic 35.0%
GAGTGGAAATACTAGACATA+AGG - chr1_1:70788774-70788793 None:intergenic 35.0%
GGAATAAACTCAACGTATCA+AGG - chr1_1:70788817-70788836 None:intergenic 35.0%
TGTTGTATGATACGGTTGAT+GGG - chr1_1:70788858-70788877 None:intergenic 35.0%
ATGTTGTATGATACGGTTGA+TGG - chr1_1:70788859-70788878 None:intergenic 35.0%
TCCTTGGATTCCTGTATAAA+AGG + chr1_1:70789204-70789223 Msa0040560:intron 35.0%
CCTTGGATTCCTGTATAAAA+GGG + chr1_1:70789205-70789224 Msa0040560:intron 35.0%
TATAGCATTAGGGATTGAAC+GGG + chr1_1:70789261-70789280 Msa0040560:intron 35.0%
TGGACATATATTGACCTATG+TGG + chr1_1:70789301-70789320 Msa0040560:intron 35.0%
AGATTAGAGGAGAAGATTCA+CGG + chr1_1:70789375-70789394 Msa0040560:CDS 35.0%
CTCGCATAAGATATAACAGA+TGG - chr1_1:70789553-70789572 None:intergenic 35.0%
ATCTTATGCGAGTTTCAGAA+AGG + chr1_1:70789561-70789580 Msa0040560:CDS 35.0%
TCTTATGCGAGTTTCAGAAA+GGG + chr1_1:70789562-70789581 Msa0040560:CDS 35.0%
! TTTCAGAAAGGGGTTTTCAA+AGG + chr1_1:70789573-70789592 Msa0040560:CDS 35.0%
TTCTTCTTTGATCATCTGCA+GGG - chr1_1:70789628-70789647 None:intergenic 35.0%
ATTCTTCTTTGATCATCTGC+AGG - chr1_1:70789629-70789648 None:intergenic 35.0%
TTACGAAGATGCATTTACCA+TGG - chr1_1:70789664-70789683 None:intergenic 35.0%
AGGATTGAGGAAAATACAAC+TGG - chr1_1:70789932-70789951 None:intergenic 35.0%
! TTTTCCCTGCTGAAATCAAA+AGG - chr1_1:70790185-70790204 None:intergenic 35.0%
!! GGGAAAAATGTTGTTTCCTT+TGG + chr1_1:70790198-70790217 Msa0040560:intron 35.0%
AGGTCATATCAGTGCAAAAA+GGG - chr1_1:70790233-70790252 None:intergenic 35.0%
AAGGTCATATCAGTGCAAAA+AGG - chr1_1:70790234-70790253 None:intergenic 35.0%
! ATGATATTTGTTGACTGCTG+TGG + chr1_1:70790400-70790419 Msa0040560:intron 35.0%
! AAATTCTTATGCAGGTTGGA+AGG - chr1_1:70790586-70790605 None:intergenic 35.0%
TTCCAACCTGCATAAGAATT+TGG + chr1_1:70790585-70790604 Msa0040560:intron 35.0%
TCCAACCTGCATAAGAATTT+GGG + chr1_1:70790586-70790605 Msa0040560:intron 35.0%
GTCTAAGTAATTATGGAGTG+AGG + chr1_1:70790637-70790656 Msa0040560:intron 35.0%
AGTTGACATGTACTGTTAAC+CGG + chr1_1:70790856-70790875 Msa0040560:intron 35.0%
TGCTCATAGAATATGTCTAC+TGG + chr1_1:70790915-70790934 Msa0040560:CDS 35.0%
!! CAATGTTTGATGGTGGTTAT+AGG + chr1_1:70790959-70790978 Msa0040560:CDS 35.0%
! TGCAGTATGCTTATTTCTTG+GGG - chr1_1:70791043-70791062 None:intergenic 35.0%
! CTTGCAGTATGCTTATTTCT+TGG - chr1_1:70791045-70791064 None:intergenic 35.0%
AGTTTGCAGTAAAAGTTGTC+AGG - chr1_1:70791194-70791213 None:intergenic 35.0%
! GACAACTTTTACTGCAAACT+TGG + chr1_1:70791194-70791213 Msa0040560:intron 35.0%
GTTTATTGCATTTGCATGAC+AGG + chr1_1:70791320-70791339 Msa0040560:intron 35.0%
AGCTAGGAAAATTGGTTGTA+TGG + chr1_1:70791626-70791645 Msa0040560:intron 35.0%
TGTCTCTCAGGATATATTAC+TGG + chr1_1:70791738-70791757 Msa0040560:intron 35.0%
! CCTCAATGATAATGCATTGA+AGG - chr1_1:70791797-70791816 None:intergenic 35.0%
CCTTCAATGCATTATCATTG+AGG + chr1_1:70791794-70791813 Msa0040560:CDS 35.0%
CCAACATCGAATAGAATTGA+GGG - chr1_1:70791890-70791909 None:intergenic 35.0%
TCCAACATCGAATAGAATTG+AGG - chr1_1:70791891-70791910 None:intergenic 35.0%
!!! TTTCTAGTTCTTTTTGGGTG+AGG + chr1_1:70792040-70792059 Msa0040560:intron 35.0%
CACGATATAATAAGTCGCTA+TGG - chr1_1:70792123-70792142 None:intergenic 35.0%
AGAAGCTGAAGATTTAAGCA+CGG - chr1_1:70792330-70792349 None:intergenic 35.0%
TACATTCTGTACATCGCAAT+TGG - chr1_1:70792497-70792516 None:intergenic 35.0%
!! GTTATTTCTTGTGTTGTACC+AGG + chr1_1:70792520-70792539 Msa0040560:three_prime_UTR 35.0%
AATGATGCTAGAGACAGAAA+GGG - chr1_1:70792650-70792669 None:intergenic 35.0%
TAATGATGCTAGAGACAGAA+AGG - chr1_1:70792651-70792670 None:intergenic 35.0%
GAAATGAATGCGTAGAGAAA+AGG + chr1_1:70793003-70793022 Msa0040560:three_prime_UTR 35.0%
TCTTATTCTTCCTCTCTACT+GGG - chr1_1:70793049-70793068 None:intergenic 35.0%
AGTAGAGAGGAAGAATAAGA+GGG + chr1_1:70793049-70793068 Msa0040560:three_prime_UTR 35.0%
TTTACCATTCTTCGCGAGAT+CGG - chr1_1:70784312-70784331 None:intergenic 40.0%
CAAGCGCAATTCAACAAGAT+CGG - chr1_1:70784344-70784363 None:intergenic 40.0%
!! ACTGGTGATTTTGTTTGCAG+AGG + chr1_1:70784388-70784407 Msa0040560:intron 40.0%
!! GATTTTGTTTGCAGAGGAAG+TGG + chr1_1:70784394-70784413 Msa0040560:intron 40.0%
TTCTGAACGCAATCAGTAAC+AGG - chr1_1:70784479-70784498 None:intergenic 40.0%
TGGGAGGAAAAGTAGCATAT+TGG + chr1_1:70784734-70784753 Msa0040560:intron 40.0%
GTTGTATTCAAGAGGGTGAA+TGG + chr1_1:70784991-70785010 Msa0040560:intron 40.0%
AAAACTGAAAGTCCTGACAG+TGG - chr1_1:70785039-70785058 None:intergenic 40.0%
CATTAGTGATCTATCCTCTC+TGG - chr1_1:70785101-70785120 None:intergenic 40.0%
CTTCTACTCAAACAGTGGTT+TGG + chr1_1:70785289-70785308 Msa0040560:intron 40.0%
TAAATCACAGTGATGAGCCA+AGG + chr1_1:70785418-70785437 Msa0040560:intron 40.0%
ACTGTATATGGTCACTTCCT+TGG - chr1_1:70785438-70785457 None:intergenic 40.0%
GCTTGATGCAGTATGTCTTA+TGG - chr1_1:70785556-70785575 None:intergenic 40.0%
AATGTTTCGTATCAACCAGC+AGG - chr1_1:70785580-70785599 None:intergenic 40.0%
AAAAACATATCGGGTTTGGG+TGG + chr1_1:70785708-70785727 Msa0040560:intron 40.0%
TTCGCTTGGTTAATTGACCA+TGG - chr1_1:70785858-70785877 None:intergenic 40.0%
AGTATGGCGAAAAAGAGACA+AGG - chr1_1:70786166-70786185 None:intergenic 40.0%
CAACAACTAATTGTGGACAG+TGG + chr1_1:70786303-70786322 Msa0040560:CDS 40.0%
GCAACATTAAAACCCATGTC+AGG + chr1_1:70786445-70786464 Msa0040560:CDS 40.0%
! GATTTTCTGTGTAGGATGGA+AGG + chr1_1:70786532-70786551 Msa0040560:intron 40.0%
!! GCTGGAATTTGCTGATACAA+AGG + chr1_1:70786579-70786598 Msa0040560:CDS 40.0%
GAGCATCACATTCAACAATC+TGG - chr1_1:70786738-70786757 None:intergenic 40.0%
!! GTATTACAGGTTGGTGTGAT+CGG + chr1_1:70786912-70786931 Msa0040560:intron 40.0%
GGTGCTTTACAACCAGTTAT+TGG + chr1_1:70786984-70787003 Msa0040560:CDS 40.0%
GAAGGGGAAATGCAATAGAA+TGG - chr1_1:70787055-70787074 None:intergenic 40.0%
AAATTCAAGATACGGGGAGA+GGG - chr1_1:70787077-70787096 None:intergenic 40.0%
GATAAACTTCACAACCGGAA+GGG + chr1_1:70787282-70787301 Msa0040560:intron 40.0%
GGTAAAGAGAGAGTTAAGCT+GGG + chr1_1:70787394-70787413 Msa0040560:intron 40.0%
TATGGTAAGAACTGTGAGCA+AGG - chr1_1:70787674-70787693 None:intergenic 40.0%
TAGGTTCACATTGTACAGAG+AGG + chr1_1:70787712-70787731 Msa0040560:intron 40.0%
!! GACGAAAGCATCTCTATCAA+AGG - chr1_1:70787748-70787767 None:intergenic 40.0%
AGAAATGTCTGCCTTTGCAT+TGG + chr1_1:70787786-70787805 Msa0040560:CDS 40.0%
GAAATGTCTGCCTTTGCATT+GGG + chr1_1:70787787-70787806 Msa0040560:CDS 40.0%
AAATGTCTGCCTTTGCATTG+GGG + chr1_1:70787788-70787807 Msa0040560:CDS 40.0%
GGTTATGTGTGTCCTGAAAT+TGG - chr1_1:70788142-70788161 None:intergenic 40.0%
ATCATACCTCATTCTCTGCA+AGG - chr1_1:70788265-70788284 None:intergenic 40.0%
AACTGAAAATCCGAACGAAG+TGG + chr1_1:70788287-70788306 Msa0040560:intron 40.0%
ATTACAAACCGAACCGCTTT+GGG - chr1_1:70788474-70788493 None:intergenic 40.0%
AATTACAAACCGAACCGCTT+TGG - chr1_1:70788475-70788494 None:intergenic 40.0%
!! GGCTTTAAGAGTAAATAGGG+GGG + chr1_1:70788557-70788576 Msa0040560:intron 40.0%
AGAATGTTGTGTTGGATGAG+TGG - chr1_1:70788791-70788810 None:intergenic 40.0%
CAAGGATGAGAATGTTGTGT+TGG - chr1_1:70788799-70788818 None:intergenic 40.0%
CGTTGAGTTTATTCCCGTAT+TGG + chr1_1:70788822-70788841 Msa0040560:intron 40.0%
TGGGCTGTAAAATGCCAATA+CGG - chr1_1:70788839-70788858 None:intergenic 40.0%
AAGATACAGCTCGTGTGAAA+GGG - chr1_1:70788913-70788932 None:intergenic 40.0%
AAAGATACAGCTCGTGTGAA+AGG - chr1_1:70788914-70788933 None:intergenic 40.0%
AATCCGACACATTATCCTGT+GGG - chr1_1:70789076-70789095 None:intergenic 40.0%
AAATCCGACACATTATCCTG+TGG - chr1_1:70789077-70789096 None:intergenic 40.0%
GGAGTTCAAAGACTACAAGA+AGG + chr1_1:70789110-70789129 Msa0040560:CDS 40.0%
!! AGGCTTTCTGCTTTTATCCT+TGG + chr1_1:70789188-70789207 Msa0040560:intron 40.0%
! CCCTTTTATACAGGAATCCA+AGG - chr1_1:70789208-70789227 None:intergenic 40.0%
ATAGCATTAGGGATTGAACG+GGG + chr1_1:70789262-70789281 Msa0040560:intron 40.0%
GTGGATATGGTTTCTATTGC+AGG + chr1_1:70789320-70789339 Msa0040560:intron 40.0%
CTTATGCGAGTTTCAGAAAG+GGG + chr1_1:70789563-70789582 Msa0040560:CDS 40.0%
! TTTTCAAAGGCGAATTGCGT+TGG + chr1_1:70789586-70789605 Msa0040560:CDS 40.0%
AGTTAAGCATCTGTCCATGT+AGG + chr1_1:70789755-70789774 Msa0040560:intron 40.0%
TAAGCAACTCAAGACCTACA+TGG - chr1_1:70789772-70789791 None:intergenic 40.0%
CAGAAAGATTGTGAGGATTG+AGG - chr1_1:70789945-70789964 None:intergenic 40.0%
GGGGTCTTTATGATGTGAAT+AGG + chr1_1:70789987-70790006 Msa0040560:intron 40.0%
ATGTCGTGTATAGTAGTGAG+TGG + chr1_1:70790335-70790354 Msa0040560:intron 40.0%
ACCCAAATTCTTATGCAGGT+TGG - chr1_1:70790590-70790609 None:intergenic 40.0%
AGACAAAGCGAGATTGAAGA+GGG - chr1_1:70790621-70790640 None:intergenic 40.0%
TAGACAAAGCGAGATTGAAG+AGG - chr1_1:70790622-70790641 None:intergenic 40.0%
! AGTGAGGTGTTTCTAAAAGC+TGG + chr1_1:70790653-70790672 Msa0040560:intron 40.0%
ACGAAACAATGTGGACAGAA+GGG - chr1_1:70790784-70790803 None:intergenic 40.0%
AACGAAACAATGTGGACAGA+AGG - chr1_1:70790785-70790804 None:intergenic 40.0%
GCATTTCGTGCAATGTTTGA+TGG + chr1_1:70790949-70790968 Msa0040560:CDS 40.0%
TTTCGTGCAATGTTTGATGG+TGG + chr1_1:70790952-70790971 Msa0040560:CDS 40.0%
! GCAGTATGCTTATTTCTTGG+GGG - chr1_1:70791042-70791061 None:intergenic 40.0%
TTGCAGTAAAAGTTGTCAGG+AGG - chr1_1:70791191-70791210 None:intergenic 40.0%
! AACTTGGCTGTTGTGTTGAT+TGG + chr1_1:70791210-70791229 Msa0040560:intron 40.0%
AGAAGGTCTTGAGCAATATC+TGG - chr1_1:70791539-70791558 None:intergenic 40.0%
ATCCTGAGAGACAAGAACAT+CGG - chr1_1:70791731-70791750 None:intergenic 40.0%
CCCTCAATTCTATTCGATGT+TGG + chr1_1:70791887-70791906 Msa0040560:intron 40.0%
! AGACAGAGCACTACTAAACA+AGG - chr1_1:70791941-70791960 None:intergenic 40.0%
!!! TAGTTCTTTTTGGGTGAGGA+GGG + chr1_1:70792044-70792063 Msa0040560:intron 40.0%
GAAGCTGAAGATTTAAGCAC+GGG - chr1_1:70792329-70792348 None:intergenic 40.0%
TCTTCAGCTTCTTGATTGTG+TGG + chr1_1:70792338-70792357 Msa0040560:intron 40.0%
ACAAAGTAATTGCGGATCTC+TGG - chr1_1:70792408-70792427 None:intergenic 40.0%
AGATTACAGTCTATGGGAGT+TGG - chr1_1:70792448-70792467 None:intergenic 40.0%
CACTGCAGATTACAGTCTAT+GGG - chr1_1:70792454-70792473 None:intergenic 40.0%
TCACTGCAGATTACAGTCTA+TGG - chr1_1:70792455-70792474 None:intergenic 40.0%
TGTACATCGCAATTGGTTAG+AGG - chr1_1:70792490-70792509 None:intergenic 40.0%
TTTCTTGTGTTGTACCAGGA+AGG + chr1_1:70792524-70792543 Msa0040560:three_prime_UTR 40.0%
TTCTTGTGTTGTACCAGGAA+GGG + chr1_1:70792525-70792544 Msa0040560:three_prime_UTR 40.0%
AGTCGACCTGTATACCATAA+AGG - chr1_1:70792556-70792575 None:intergenic 40.0%
ATGATGCTAGAGACAGAAAG+GGG - chr1_1:70792649-70792668 None:intergenic 40.0%
TTAATTCCTGTCGTCTGACA+TGG + chr1_1:70792839-70792858 Msa0040560:three_prime_UTR 40.0%
! AAAGGTGTACCATAGGTCTA+CGG + chr1_1:70792970-70792989 Msa0040560:three_prime_UTR 40.0%
AGATATGTTCCGTAGACCTA+TGG - chr1_1:70792982-70793001 None:intergenic 40.0%
ATGAATGCGTAGAGAAAAGG+AGG + chr1_1:70793006-70793025 Msa0040560:three_prime_UTR 40.0%
CTCTTATTCTTCCTCTCTAC+TGG - chr1_1:70793050-70793069 None:intergenic 40.0%
CAGTAGAGAGGAAGAATAAG+AGG + chr1_1:70793048-70793067 Msa0040560:three_prime_UTR 40.0%
GTAGAGAGGAAGAATAAGAG+GGG + chr1_1:70793050-70793069 Msa0040560:three_prime_UTR 40.0%
TGGCGCTATGGTTAACAGAA+TGG - chr1_1:70784019-70784038 None:intergenic 45.0%
!! AAGAAGAGTGTGGTGTTGGT+TGG - chr1_1:70784039-70784058 None:intergenic 45.0%
AAGAAGGGTGAAGAAGAGTG+TGG - chr1_1:70784049-70784068 None:intergenic 45.0%
CCATGAACGAGAGAGAAGAA+GGG - chr1_1:70784064-70784083 None:intergenic 45.0%
TCCATGAACGAGAGAGAAGA+AGG - chr1_1:70784065-70784084 None:intergenic 45.0%
TCTCGTCGAAGTTGCTAATC+AGG + chr1_1:70784211-70784230 Msa0040560:CDS 45.0%
CGTGAAAGTAGACTCGAGAA+CGG - chr1_1:70784240-70784259 None:intergenic 45.0%
TTCTCGAGTCTACTTTCACG+TGG + chr1_1:70784240-70784259 Msa0040560:CDS 45.0%
GGAAGTGGTGAATGTGATTG+TGG + chr1_1:70784409-70784428 Msa0040560:CDS 45.0%
GTGGTGAATGTGATTGTGGA+AGG + chr1_1:70784413-70784432 Msa0040560:CDS 45.0%
GTGAATGTGATTGTGGAAGG+AGG + chr1_1:70784416-70784435 Msa0040560:CDS 45.0%
TGAACGCAATCAGTAACAGG+CGG - chr1_1:70784476-70784495 None:intergenic 45.0%
ACTTCATGCTCAAACGGCAA+CGG - chr1_1:70784503-70784522 None:intergenic 45.0%
!! AAAGGGAGTGCTTTCGCATT+AGG + chr1_1:70784527-70784546 Msa0040560:CDS 45.0%
ATTAGGACTTCTCGCAGTCA+AGG + chr1_1:70784544-70784563 Msa0040560:CDS 45.0%
AGTTGGCATATTAGAGTGGG+AGG + chr1_1:70784718-70784737 Msa0040560:intron 45.0%
! GAGAGAGTAAGTGCCTTGTT+CGG - chr1_1:70785627-70785646 None:intergenic 45.0%
TGTCAACATCCTCCATGATG+AGG + chr1_1:70786139-70786158 Msa0040560:intron 45.0%
AAGAGACAAGGTCCTCATCA+TGG - chr1_1:70786154-70786173 None:intergenic 45.0%
ATGAGAGGCAAACCTGACAT+GGG - chr1_1:70786460-70786479 None:intergenic 45.0%
TTTCTGTGTAGGATGGAAGG+TGG + chr1_1:70786535-70786554 Msa0040560:intron 45.0%
TCCACCACTTGTTCATTTGC+TGG + chr1_1:70786561-70786580 Msa0040560:CDS 45.0%
TCCAGCAAATGAACAAGTGG+TGG - chr1_1:70786565-70786584 None:intergenic 45.0%
CGCAGCATTAGAATCAGAGT+CGG - chr1_1:70786763-70786782 None:intergenic 45.0%
! GCTCTGGACTCAATTATTGC+CGG + chr1_1:70787027-70787046 Msa0040560:intron 45.0%
CTCTGGACTCAATTATTGCC+GGG + chr1_1:70787028-70787047 Msa0040560:intron 45.0%
GAAATGCAATAGAATGGGCC+CGG - chr1_1:70787049-70787068 None:intergenic 45.0%
CAAATTCAAGATACGGGGAG+AGG - chr1_1:70787078-70787097 None:intergenic 45.0%
!! AGCTACTGATTCAGACTGCA+AGG + chr1_1:70787255-70787274 Msa0040560:CDS 45.0%
CTGATTCAGACTGCAAGGTA+AGG + chr1_1:70787260-70787279 Msa0040560:intron 45.0%
GGATAAACTTCACAACCGGA+AGG + chr1_1:70787281-70787300 Msa0040560:intron 45.0%
GGGTAAAGAGAGAGTTAAGC+TGG + chr1_1:70787393-70787412 Msa0040560:intron 45.0%
!! TATAGGTGCTACTCCTGTGA+TGG + chr1_1:70787629-70787648 Msa0040560:intron 45.0%
TTCTTACCATACGTTCCACC+TGG + chr1_1:70787683-70787702 Msa0040560:intron 45.0%
AACAAACCAGGTGGAACGTA+TGG - chr1_1:70787692-70787711 None:intergenic 45.0%
!! ACGTTCCACCTGGTTTGTTT+AGG + chr1_1:70787693-70787712 Msa0040560:intron 45.0%
GTGAACCTAAACAAACCAGG+TGG - chr1_1:70787701-70787720 None:intergenic 45.0%
CATTGTGTGCAATACCAGCT+TGG - chr1_1:70788163-70788182 None:intergenic 45.0%
CAAGCTGGTATTGCACACAA+TGG + chr1_1:70788161-70788180 Msa0040560:CDS 45.0%
! TTATGGCCTTGCAGAGAATG+AGG + chr1_1:70788256-70788275 Msa0040560:CDS 45.0%
CAGAAGATGTCCACTTCGTT+CGG - chr1_1:70788300-70788319 None:intergenic 45.0%
TTACAAACCGAACCGCTTTG+GGG - chr1_1:70788473-70788492 None:intergenic 45.0%
TTCGGGATATATCTCCCGAA+GGG - chr1_1:70788525-70788544 None:intergenic 45.0%
GGGCTGTAAAATGCCAATAC+GGG - chr1_1:70788838-70788857 None:intergenic 45.0%
AAGCAGGGTAGTTGAAATGG+AGG - chr1_1:70788962-70788981 None:intergenic 45.0%
TCCATTTCAACTACCCTGCT+TGG + chr1_1:70788961-70788980 Msa0040560:intron 45.0%
TCCAAGCAGGGTAGTTGAAA+TGG - chr1_1:70788965-70788984 None:intergenic 45.0%
TTCCCCACAGGATAATGTGT+CGG + chr1_1:70789070-70789089 Msa0040560:intron 45.0%
ATCCGACACATTATCCTGTG+GGG - chr1_1:70789075-70789094 None:intergenic 45.0%
GTGTCGGATTTCATTAGGGT+AGG + chr1_1:70789086-70789105 Msa0040560:CDS 45.0%
TCGGATTTCATTAGGGTAGG+TGG + chr1_1:70789089-70789108 Msa0040560:CDS 45.0%
!! ATCAAGTTGCTGTTTGGAGC+TGG - chr1_1:70789813-70789832 None:intergenic 45.0%
AGCTCCAAACAGCAACTTGA+TGG + chr1_1:70789812-70789831 Msa0040560:CDS 45.0%
! AGCACCATCAAGTTGCTGTT+TGG - chr1_1:70789819-70789838 None:intergenic 45.0%
!! TGCTGTGGCTTTATGCAAGT+TGG + chr1_1:70789835-70789854 Msa0040560:CDS 45.0%
! CAAGTTGGCCAATAAAGCCT+CGG + chr1_1:70789850-70789869 Msa0040560:CDS 45.0%
AGTAGTGAGTGGTCGATACA+AGG + chr1_1:70790346-70790365 Msa0040560:intron 45.0%
CAGCACCCAAATTCTTATGC+AGG - chr1_1:70790594-70790613 None:intergenic 45.0%
TTCTTGGGGGAGCTTCTTTA+GGG - chr1_1:70791029-70791048 None:intergenic 45.0%
TTTCTTGGGGGAGCTTCTTT+AGG - chr1_1:70791030-70791049 None:intergenic 45.0%
TGCATTTGCATGACAGGAGA+AGG + chr1_1:70791326-70791345 Msa0040560:intron 45.0%
ATGACAGGAGAAGGATGCAA+GGG + chr1_1:70791335-70791354 Msa0040560:intron 45.0%
ATTGATCAGCTGCTCGAAGA+AGG - chr1_1:70791556-70791575 None:intergenic 45.0%
CTGTGAGTACACAATTGCAC+AGG + chr1_1:70791601-70791620 Msa0040560:CDS 45.0%
CACAGGTGAGCTAGGAAAAT+TGG + chr1_1:70791618-70791637 Msa0040560:intron 45.0%
TCCTGAGAGACAAGAACATC+GGG - chr1_1:70791730-70791749 None:intergenic 45.0%
! ACTTTGATAAGTTGAGCGCG+AGG + chr1_1:70791845-70791864 Msa0040560:CDS 45.0%
!!! CTAGTTCTTTTTGGGTGAGG+AGG + chr1_1:70792043-70792062 Msa0040560:intron 45.0%
! CTCTGGTTAGCTGAATGGTT+CGG + chr1_1:70792230-70792249 Msa0040560:intron 45.0%
!! AGAGAGTGCCTGCAAACAAT+TGG - chr1_1:70792366-70792385 None:intergenic 45.0%
TCTTGTGTTGTACCAGGAAG+GGG + chr1_1:70792526-70792545 Msa0040560:three_prime_UTR 45.0%
GGGTCTCCTTTATGGTATAC+AGG + chr1_1:70792547-70792566 Msa0040560:three_prime_UTR 45.0%
AGAGAACATGCACTACTCTC+TGG - chr1_1:70792595-70792614 None:intergenic 45.0%
! AAGAATAAGAGGGGTGCAGT+TGG + chr1_1:70793059-70793078 Msa0040560:three_prime_UTR 45.0%
! GGTGAAGAAGAGTGTGGTGT+TGG - chr1_1:70784043-70784062 None:intergenic 50.0%
CCCTTCTTCTCTCTCGTTCA+TGG + chr1_1:70784061-70784080 Msa0040560:exon 50.0%
ATGGAGTTTCAGAGACGCCA+AGG + chr1_1:70784080-70784099 Msa0040560:CDS 50.0%
! ACGTTTTTGCCCCTTCCTCT+CGG - chr1_1:70784117-70784136 None:intergenic 50.0%
ATACTGCATCAAGCACCTGC+TGG + chr1_1:70785562-70785581 Msa0040560:intron 50.0%
!! GTGAGGGTGTCTCTTGCTAT+GGG + chr1_1:70786000-70786019 Msa0040560:intron 50.0%
AGACAAGGTCCTCATCATGG+AGG - chr1_1:70786151-70786170 None:intergenic 50.0%
CATGAGAGGCAAACCTGACA+TGG - chr1_1:70786461-70786480 None:intergenic 50.0%
AGGGAAGCGGCATTGTTACT+TGG + chr1_1:70787223-70787242 Msa0040560:CDS 50.0%
TTCACAACCGGAAGGGATAG+TGG + chr1_1:70787289-70787308 Msa0040560:intron 50.0%
TGCCTTTGCATTGGGGAGAT+TGG + chr1_1:70787795-70787814 Msa0040560:CDS 50.0%
CAGGACACACATAACCAAGC+TGG + chr1_1:70788146-70788165 Msa0040560:intron 50.0%
GCTGGTATTGCACACAATGG+TGG + chr1_1:70788164-70788183 Msa0040560:CDS 50.0%
GAGTCAAGAAGCTTGAGCAG+TGG - chr1_1:70788197-70788216 None:intergenic 50.0%
CAACCAAGCCGTGTCTCATT+AGG + chr1_1:70788334-70788353 Msa0040560:intron 50.0%
CAAGCCGTGTCTCATTAGGT+GGG + chr1_1:70788338-70788357 Msa0040560:intron 50.0%
CGATCCCACCTAATGAGACA+CGG - chr1_1:70788345-70788364 None:intergenic 50.0%
CGTGTCTCATTAGGTGGGAT+CGG + chr1_1:70788343-70788362 Msa0040560:intron 50.0%
ATTAGGTGGGATCGGCTATG+TGG + chr1_1:70788351-70788370 Msa0040560:intron 50.0%
TACAAACCGAACCGCTTTGG+GGG - chr1_1:70788472-70788491 None:intergenic 50.0%
GTTCGGGATATATCTCCCGA+AGG - chr1_1:70788526-70788545 None:intergenic 50.0%
!! ACAGCAACTTGATGGTGCTG+TGG + chr1_1:70789820-70789839 Msa0040560:CDS 50.0%
CTTGAACCTACCTGTGGTGT+TGG - chr1_1:70789908-70789927 None:intergenic 50.0%
ACTGGACTTGAACCTACCTG+TGG - chr1_1:70789914-70789933 None:intergenic 50.0%
! CTTATGCAGGTTGGAAGGCA+TGG - chr1_1:70790581-70790600 None:intergenic 50.0%
CATGACAGGAGAAGGATGCA+AGG + chr1_1:70791334-70791353 Msa0040560:intron 50.0%
CACAATTGCACAGGTGAGCT+AGG + chr1_1:70791610-70791629 Msa0040560:intron 50.0%
GACAAGAACATCGGGTCATG+AGG - chr1_1:70791722-70791741 None:intergenic 50.0%
ACCCGATGTTCTTGTCTCTC+AGG + chr1_1:70791726-70791745 Msa0040560:intron 50.0%
! ATAAGTTGAGCGCGAGGCAA+GGG + chr1_1:70791851-70791870 Msa0040560:CDS 50.0%
!!! GTAGTTTTGGTGACCGACCT+TGG + chr1_1:70791972-70791991 Msa0040560:intron 50.0%
TGGCAGTAGAAACCAACCTC+TGG + chr1_1:70792213-70792232 Msa0040560:intron 50.0%
CCATTCAGCTAACCAGAGGT+TGG - chr1_1:70792228-70792247 None:intergenic 50.0%
! CCAACCTCTGGTTAGCTGAA+TGG + chr1_1:70792225-70792244 Msa0040560:intron 50.0%
CGAACCATTCAGCTAACCAG+AGG - chr1_1:70792232-70792251 None:intergenic 50.0%
GTGTGGCACCAATTGTTTGC+AGG + chr1_1:70792355-70792374 Msa0040560:intron 50.0%
CTTGTGTTGTACCAGGAAGG+GGG + chr1_1:70792527-70792546 Msa0040560:three_prime_UTR 50.0%
ACTGCTGGGTAATTTAGGCC+AGG + chr1_1:70792813-70792832 Msa0040560:three_prime_UTR 50.0%
GACGACAGGAATTAACGTCC+TGG - chr1_1:70792834-70792853 None:intergenic 50.0%
ACAGTTCCATGTCAGACGAC+AGG - chr1_1:70792848-70792867 None:intergenic 50.0%
TACTATACTCGTACGGCCCA+AGG + chr1_1:70792887-70792906 Msa0040560:three_prime_UTR 50.0%
ACTTTCTGCACCCAGTAGAG+AGG + chr1_1:70793036-70793055 Msa0040560:three_prime_UTR 50.0%
!! TGTGGTGTTGGTTGGCGCTA+TGG - chr1_1:70784031-70784050 None:intergenic 55.0%
GACGAGATCTGACGGTCTTC+CGG - chr1_1:70784158-70784177 None:intergenic 55.0%
GGAAGACCGTCAGATCTCGT+CGG + chr1_1:70784157-70784176 Msa0040560:CDS 55.0%
GAATGAAGACGATCGAGCCG+CGG + chr1_1:70784262-70784281 Msa0040560:CDS 55.0%
ATGAGTAGCACGCTTAGCCG+CGG - chr1_1:70784282-70784301 None:intergenic 55.0%
! TGTGGAAGGAGGTGCGATTC+CGG + chr1_1:70784427-70784446 Msa0040560:CDS 55.0%
AGACACCCTCACCGTAGTCT+CGG - chr1_1:70785992-70786011 None:intergenic 55.0%
!! GGTGAGGGTGTCTCTTGCTA+TGG + chr1_1:70785999-70786018 Msa0040560:intron 55.0%
AAGGTGCAAAGAGCAGCTGC+TGG + chr1_1:70786598-70786617 Msa0040560:CDS 55.0%
AAGATACGGGGAGAGGGAAG+GGG - chr1_1:70787071-70787090 None:intergenic 55.0%
CAAGATACGGGGAGAGGGAA+GGG - chr1_1:70787072-70787091 None:intergenic 55.0%
TCAAGATACGGGGAGAGGGA+AGG - chr1_1:70787073-70787092 None:intergenic 55.0%
ACGCTGCCCTGAAAGTCAGA+GGG + chr1_1:70787204-70787223 Msa0040560:CDS 55.0%
CCGCTTCCCTCTGACTTTCA+GGG - chr1_1:70787213-70787232 None:intergenic 55.0%
CCCTGAAAGTCAGAGGGAAG+CGG + chr1_1:70787210-70787229 Msa0040560:CDS 55.0%
GGCCAATCTCCCCAATGCAA+AGG - chr1_1:70787800-70787819 None:intergenic 55.0%
CCACCTAATGAGACACGGCT+TGG - chr1_1:70788340-70788359 None:intergenic 55.0%
CCAAGCCGTGTCTCATTAGG+TGG + chr1_1:70788337-70788356 Msa0040560:intron 55.0%
!!! GCTTTTTTGGCCCCCCAAAG+CGG + chr1_1:70788458-70788477 Msa0040560:intron 55.0%
! ACAAACCGAACCGCTTTGGG+GGG - chr1_1:70788471-70788490 None:intergenic 55.0%
! AGACAGGGCCGAGGCTTTAT+TGG - chr1_1:70789861-70789880 None:intergenic 55.0%
! TGGTGTTGGAGAAGGAGGAG+CGG - chr1_1:70789894-70789913 None:intergenic 55.0%
TCCTCCTTCTCCAACACCAC+AGG + chr1_1:70789895-70789914 Msa0040560:CDS 55.0%
! ACCTGTGGTGTTGGAGAAGG+AGG - chr1_1:70789899-70789918 None:intergenic 55.0%
! CCTACCTGTGGTGTTGGAGA+AGG - chr1_1:70789902-70789921 None:intergenic 55.0%
CCTTCTCCAACACCACAGGT+AGG + chr1_1:70789899-70789918 Msa0040560:intron 55.0%
! GGGGGAGCTTCTTTAGGGAA+GGG - chr1_1:70791024-70791043 None:intergenic 55.0%
! TGGGGGAGCTTCTTTAGGGA+AGG - chr1_1:70791025-70791044 None:intergenic 55.0%
! GATAAGTTGAGCGCGAGGCA+AGG + chr1_1:70791850-70791869 Msa0040560:CDS 55.0%
CATAAAGGAGACCCCCTTCC+TGG - chr1_1:70792541-70792560 None:intergenic 55.0%
CAGGAAGGGGGTCTCCTTTA+TGG + chr1_1:70792539-70792558 Msa0040560:three_prime_UTR 55.0%
AGACACCAGCAGCATGCCTT+GGG - chr1_1:70792906-70792925 None:intergenic 55.0%
TCTCGGAGAGGCAGTGACCT+TGG - chr1_1:70784100-70784119 None:intergenic 60.0%
AAGGTCACTGCCTCTCCGAG+AGG + chr1_1:70784099-70784118 Msa0040560:CDS 60.0%
TCACTGCCTCTCCGAGAGGA+AGG + chr1_1:70784103-70784122 Msa0040560:CDS 60.0%
CACTGCCTCTCCGAGAGGAA+GGG + chr1_1:70784104-70784123 Msa0040560:CDS 60.0%
ACTGCCTCTCCGAGAGGAAG+GGG + chr1_1:70784105-70784124 Msa0040560:CDS 60.0%
TTTGCCCCTTCCTCTCGGAG+AGG - chr1_1:70784112-70784131 None:intergenic 60.0%
!! GAGAAGTGCCGCACGTTCGT+CGG - chr1_1:70784195-70784214 None:intergenic 60.0%
CTCGCCGATCTCGCGAAGAA+TGG + chr1_1:70784305-70784324 Msa0040560:CDS 60.0%
GGTGGTCTGGTCCGAGACTA+CGG + chr1_1:70785978-70785997 Msa0040560:intron 60.0%
TCTGGTCCGAGACTACGGTG+AGG + chr1_1:70785983-70786002 Msa0040560:intron 60.0%
CTGGTCCGAGACTACGGTGA+GGG + chr1_1:70785984-70786003 Msa0040560:intron 60.0%
CACGCTGCCCTGAAAGTCAG+AGG + chr1_1:70787203-70787222 Msa0040560:CDS 60.0%
GCCGCTTCCCTCTGACTTTC+AGG - chr1_1:70787214-70787233 None:intergenic 60.0%
! TGCATTGGGGAGATTGGCCC+AGG + chr1_1:70787801-70787820 Msa0040560:CDS 60.0%
TTTGGCCCCCCAAAGCGGTT+CGG + chr1_1:70788463-70788482 Msa0040560:intron 60.0%
AGCGGCGTCTACAGGAGACA+GGG - chr1_1:70789876-70789895 None:intergenic 60.0%
GAGACACCAGCAGCATGCCT+TGG - chr1_1:70792907-70792926 None:intergenic 60.0%
!! GCGGTGCCGACGAGATCTGA+CGG - chr1_1:70784166-70784185 None:intergenic 65.0%
! AAGTGCCGCACGTTCGTCGG+CGG - chr1_1:70784192-70784211 None:intergenic 65.0%
GTCTACAGGAGACAGGGCCG+AGG - chr1_1:70789870-70789889 None:intergenic 65.0%
GAGCGGCGTCTACAGGAGAC+AGG - chr1_1:70789877-70789896 None:intergenic 65.0%
GAAGGAGGAGCGGCGTCTAC+AGG - chr1_1:70789884-70789903 None:intergenic 65.0%
TACGGCCCAAGGCATGCTGC+TGG + chr1_1:70792898-70792917 Msa0040560:three_prime_UTR 65.0%
GCACGTTCGTCGGCGGTAGG+CGG - chr1_1:70784185-70784204 None:intergenic 70.0%
GCCTACCGCCGACGAACGTG+CGG + chr1_1:70784184-70784203 Msa0040560:CDS 70.0%
GCCGCACGTTCGTCGGCGGT+AGG - chr1_1:70784188-70784207 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70783933 70793084 70783933 ID=Msa0040560;Name=Msa0040560
chr1_1 mRNA 70783933 70793084 70783933 ID=Msa0040560-mRNA-1;Parent=Msa0040560;Name=Msa0040560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=147|1|1|1|1|1|19|620|704
chr1_1 exon 70783933 70784326 70783933 ID=Msa0040560-mRNA-1:exon:23359;Parent=Msa0040560-mRNA-1
chr1_1 exon 70784408 70784565 70784408 ID=Msa0040560-mRNA-1:exon:23360;Parent=Msa0040560-mRNA-1
chr1_1 exon 70786294 70786466 70786294 ID=Msa0040560-mRNA-1:exon:23361;Parent=Msa0040560-mRNA-1
chr1_1 exon 70786546 70786666 70786546 ID=Msa0040560-mRNA-1:exon:23362;Parent=Msa0040560-mRNA-1
chr1_1 exon 70786739 70786813 70786739 ID=Msa0040560-mRNA-1:exon:23363;Parent=Msa0040560-mRNA-1
chr1_1 exon 70786921 70787015 70786921 ID=Msa0040560-mRNA-1:exon:23364;Parent=Msa0040560-mRNA-1
chr1_1 exon 70787201 70787276 70787201 ID=Msa0040560-mRNA-1:exon:23365;Parent=Msa0040560-mRNA-1
chr1_1 exon 70787715 70787822 70787715 ID=Msa0040560-mRNA-1:exon:23366;Parent=Msa0040560-mRNA-1
chr1_1 exon 70788149 70788277 70788149 ID=Msa0040560-mRNA-1:exon:23367;Parent=Msa0040560-mRNA-1
chr1_1 exon 70789080 70789148 70789080 ID=Msa0040560-mRNA-1:exon:23368;Parent=Msa0040560-mRNA-1
chr1_1 exon 70789342 70789401 70789342 ID=Msa0040560-mRNA-1:exon:23369;Parent=Msa0040560-mRNA-1
chr1_1 exon 70789542 70789665 70789542 ID=Msa0040560-mRNA-1:exon:23370;Parent=Msa0040560-mRNA-1
chr1_1 exon 70789777 70789916 70789777 ID=Msa0040560-mRNA-1:exon:23371;Parent=Msa0040560-mRNA-1
chr1_1 exon 70790709 70790772 70790709 ID=Msa0040560-mRNA-1:exon:23372;Parent=Msa0040560-mRNA-1
chr1_1 exon 70790902 70790981 70790902 ID=Msa0040560-mRNA-1:exon:23373;Parent=Msa0040560-mRNA-1
chr1_1 exon 70791342 70791406 70791342 ID=Msa0040560-mRNA-1:exon:23374;Parent=Msa0040560-mRNA-1
chr1_1 exon 70791505 70791622 70791505 ID=Msa0040560-mRNA-1:exon:23375;Parent=Msa0040560-mRNA-1
chr1_1 exon 70791748 70791872 70791748 ID=Msa0040560-mRNA-1:exon:23376;Parent=Msa0040560-mRNA-1
chr1_1 exon 70792377 70793084 70792377 ID=Msa0040560-mRNA-1:exon:23377;Parent=Msa0040560-mRNA-1
chr1_1 five_prime_UTR 70783933 70784079 70783933 ID=Msa0040560-mRNA-1:five_prime_utr;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70784080 70784326 70784080 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70784408 70784565 70784408 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70786294 70786466 70786294 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70786546 70786666 70786546 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70786739 70786813 70786739 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70786921 70787015 70786921 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70787201 70787276 70787201 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70787715 70787822 70787715 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70788149 70788277 70788149 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70789080 70789148 70789080 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70789342 70789401 70789342 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70789542 70789665 70789542 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70789777 70789916 70789777 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70790709 70790772 70790709 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70790902 70790981 70790902 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70791342 70791406 70791342 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70791505 70791622 70791505 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70791748 70791872 70791748 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 CDS 70792377 70792464 70792377 ID=Msa0040560-mRNA-1:cds;Parent=Msa0040560-mRNA-1
chr1_1 three_prime_UTR 70792465 70793084 70792465 ID=Msa0040560-mRNA-1:three_prime_utr;Parent=Msa0040560-mRNA-1
Gene Sequence

>Msa0040560

ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGACGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTTACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCTTTCGCATTAGGACTTCTCGCAGTCAAGCCGGAACATCAACAACTAATTGTGGACAGTGGTGCCTTAACACACCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTAGTTCACTCATCTCCGAATATAAAGAAAGAGGTTCTATTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGTTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCCCTGTCTCCTGTAGACGCCGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGCTTATATGCTCATAGAATATGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTAAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGAGGCAAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGCCAACTCCCATAGACTGTAA
Protein sequence

>Msa0040560

MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEDDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAVALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRLYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARQGHSLLIQRIIPEIRNYFVKALTNANSHRL*