AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040700 MtrunA17_Chr1g0205981 85.106 188 26 1 122 307 1 188 2.57e-106 317
Msa0040700 MtrunA17_Chr2g0322731 47.250 400 160 7 40 394 74 467 6.54e-106 335
Msa0040700 MtrunA17_Chr2g0322731 50.323 155 76 1 390 544 612 765 1.31e-37 148
Msa0040700 MtrunA17_Chr4g0024351 46.939 392 162 7 43 394 41 426 2.57e-105 332
Msa0040700 MtrunA17_Chr4g0024351 47.170 159 80 1 390 544 571 729 9.41e-35 139
Msa0040700 MtrunA17_Chr8g0350321 36.364 396 192 9 59 394 106 501 3.51e-66 229
Msa0040700 MtrunA17_Chr8g0350321 43.671 158 83 1 393 544 649 806 6.52e-33 134
Msa0040700 MtrunA17_Chr5g0394111 38.191 398 144 7 42 394 8 348 1.86e-65 224
Msa0040700 MtrunA17_Chr5g0394111 49.007 151 75 2 395 545 499 647 1.45e-38 150
Msa0040700 MtrunA17_Chr7g0246631 35.840 399 170 11 67 394 91 474 2.42e-65 226
Msa0040700 MtrunA17_Chr7g0246631 44.156 154 83 2 393 544 622 774 1.32e-32 133
Msa0040700 MtrunA17_Chr1g0203671 35.533 394 188 10 65 394 93 484 9.34e-62 217
Msa0040700 MtrunA17_Chr1g0203671 42.138 159 84 2 393 544 632 789 1.39e-30 127
Msa0040700 MtrunA17_Chr5g0410711 34.670 424 206 12 59 420 78 492 5.92e-61 215
Msa0040700 MtrunA17_Chr5g0410711 32.143 168 102 3 393 548 615 782 2.29e-15 79.3
Msa0040700 MtrunA17_Chr6g0472471 34.518 394 177 9 73 394 75 459 1.24e-58 208
Msa0040700 MtrunA17_Chr6g0472471 35.802 162 92 2 395 544 604 765 9.39e-21 96.3
Msa0040700 MtrunA17_Chr6g0481041 33.766 385 198 9 66 394 27 410 6.61e-55 197
Msa0040700 MtrunA17_Chr6g0481041 32.544 169 95 2 393 544 557 723 7.27e-18 87.4
Msa0040700 MtrunA17_Chr2g0331581 33.154 371 174 9 73 394 145 490 5.77e-51 187
Msa0040700 MtrunA17_Chr2g0331581 34.839 155 95 2 393 544 638 789 8.20e-22 99.8
Msa0040700 MtrunA17_Chr7g0224451 33.069 378 162 11 65 394 14 348 6.72e-48 172
Msa0040700 MtrunA17_Chr7g0224481 32.249 369 159 11 65 385 14 339 2.24e-44 160
Msa0040700 MtrunA17_Chr5g0419821 41.667 132 75 1 58 187 23 154 1.11e-22 95.1
Msa0040700 MtrunA17_Chr2g0319691 58.209 67 28 0 328 394 1 67 1.59e-19 85.5
Msa0040700 MtrunA17_Chr2g0292731 29.630 270 122 11 209 419 12 272 1.90e-19 91.7
Msa0040700 MtrunA17_Chr2g0319671 37.097 124 48 1 301 394 103 226 2.27e-18 86.3
Msa0040700 MtrunA17_Chr2g0292741 28.571 252 120 8 209 410 4 245 2.36e-18 88.2
Msa0040700 MtrunA17_Chr7g0224491 33.533 167 83 6 393 544 140 293 8.04e-15 75.5
Msa0040700 MtrunA17_Chr2g0319681 31.613 155 98 3 393 544 76 225 4.14e-11 63.5
Msa0040700 MtrunA17_Chr7g0224461 31.452 124 61 4 435 544 1 114 4.78e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040700 AT4G04890.2 50.660 379 141 9 60 394 54 430 5.80e-112 350
Msa0040700 AT4G04890.2 45.679 162 81 2 390 544 574 735 2.33e-36 144
Msa0040700 AT4G04890.1 50.660 379 141 9 60 394 54 430 5.80e-112 350
Msa0040700 AT4G04890.1 45.679 162 81 2 390 544 574 735 2.33e-36 144
Msa0040700 AT4G21750.2 45.147 443 181 10 9 394 1 438 6.51e-112 350
Msa0040700 AT4G21750.2 43.407 182 71 2 390 545 583 758 6.31e-37 146
Msa0040700 AT4G21750.1 45.147 443 181 10 9 394 1 438 6.51e-112 350
Msa0040700 AT4G21750.1 43.407 182 71 2 390 545 583 758 6.31e-37 146
Msa0040700 AT4G21750.3 45.147 443 181 10 9 394 1 438 6.51e-112 350
Msa0040700 AT4G21750.3 43.407 182 71 2 390 545 583 758 6.31e-37 146
Msa0040700 AT4G21750.4 45.147 443 181 10 9 394 1 438 6.51e-112 350
Msa0040700 AT4G21750.4 43.407 182 71 2 390 545 583 758 6.31e-37 146
Msa0040700 AT1G05230.12 42.593 432 183 8 44 423 41 459 1.95e-100 316
Msa0040700 AT1G05230.3 42.593 432 183 8 44 423 41 459 2.26e-99 317
Msa0040700 AT1G05230.3 48.387 155 73 3 390 544 567 714 2.48e-36 144
Msa0040700 AT1G05230.8 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.8 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.4 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.4 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.9 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.9 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.10 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.10 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.7 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.7 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.11 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.11 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.2 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.2 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.6 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.6 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.5 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.5 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT1G05230.1 42.593 432 183 8 44 423 41 459 3.25e-99 316
Msa0040700 AT1G05230.1 49.032 155 74 2 390 544 567 716 1.56e-38 150
Msa0040700 AT2G32370.1 38.776 392 186 8 46 394 49 429 1.10e-72 246
Msa0040700 AT2G32370.1 39.865 148 79 3 395 541 579 717 4.29e-23 103
Msa0040700 AT4G00730.2 36.591 399 167 8 59 394 125 500 2.69e-68 231
Msa0040700 AT3G61150.1 36.524 397 174 10 66 394 109 495 6.29e-68 234
Msa0040700 AT3G61150.1 44.375 160 81 1 393 544 644 803 4.01e-34 138
Msa0040700 AT4G00730.1 36.591 399 167 8 59 394 125 500 7.75e-67 231
Msa0040700 AT4G00730.1 42.105 152 85 2 394 544 649 798 2.43e-29 123
Msa0040700 AT1G73360.1 34.826 402 204 10 66 412 31 429 3.53e-55 198
Msa0040700 AT1G73360.1 35.484 155 95 2 394 544 560 713 1.66e-22 102
Msa0040700 AT5G52170.2 34.474 380 162 8 58 394 48 383 5.85e-55 197
Msa0040700 AT5G52170.2 39.103 156 89 2 394 544 529 683 5.40e-26 113
Msa0040700 AT5G52170.3 34.474 380 162 8 58 394 48 383 6.68e-55 197
Msa0040700 AT5G52170.3 39.103 156 89 2 394 544 524 678 5.29e-26 113
Msa0040700 AT5G52170.1 34.474 380 162 8 58 394 48 383 6.68e-55 197
Msa0040700 AT5G52170.1 39.103 156 89 2 394 544 524 678 5.29e-26 113
Msa0040700 AT1G17920.2 35.696 381 172 10 73 394 27 393 4.84e-51 186
Msa0040700 AT1G17920.2 36.184 152 85 2 394 544 541 681 1.66e-22 102
Msa0040700 AT1G17920.1 35.696 381 172 10 73 394 27 393 4.84e-51 186
Msa0040700 AT1G17920.1 36.184 152 85 2 394 544 541 681 1.66e-22 102
Msa0040700 AT5G46880.3 33.094 417 194 16 59 395 104 515 6.90e-51 187
Msa0040700 AT5G46880.3 32.540 126 81 2 396 520 660 782 8.99e-11 65.5
Msa0040700 AT5G46880.1 33.094 417 194 16 59 395 104 515 6.90e-51 187
Msa0040700 AT5G46880.1 32.540 126 81 2 396 520 660 782 8.99e-11 65.5
Msa0040700 AT5G46880.2 33.094 417 194 16 59 395 104 515 6.90e-51 187
Msa0040700 AT5G46880.2 32.540 126 81 2 396 520 660 782 8.99e-11 65.5
Msa0040700 AT3G03260.2 33.158 380 189 8 68 394 24 391 2.45e-45 168
Msa0040700 AT3G03260.1 33.684 380 187 9 68 394 24 391 1.53e-44 168
Msa0040700 AT3G03260.1 32.727 165 89 5 394 544 538 694 3.01e-16 82.4
Msa0040700 AT1G79840.5 32.190 379 172 11 66 394 100 443 2.44e-44 164
Msa0040700 AT1G79840.4 32.190 379 172 11 66 394 100 443 5.78e-44 165
Msa0040700 AT1G79840.3 32.190 379 172 11 66 394 42 385 9.52e-44 166
Msa0040700 AT1G79840.3 36.364 154 92 2 394 544 534 684 2.32e-21 98.6
Msa0040700 AT1G79840.6 32.190 379 172 11 66 394 42 385 9.52e-44 166
Msa0040700 AT1G79840.6 36.364 154 92 2 394 544 534 684 2.32e-21 98.6
Msa0040700 AT4G17710.1 31.746 378 177 10 59 394 81 419 1.07e-43 166
Msa0040700 AT4G17710.1 30.968 155 103 2 393 546 554 705 4.12e-14 75.9
Msa0040700 AT1G79840.1 32.190 379 172 11 66 394 100 443 1.20e-43 166
Msa0040700 AT1G79840.1 36.364 154 92 2 394 544 592 742 2.03e-21 99.0
Msa0040700 AT1G79840.2 32.190 379 172 11 66 394 129 472 2.53e-43 165
Msa0040700 AT1G79840.2 36.364 154 92 2 394 544 621 771 3.10e-21 98.6
Msa0040700 AT5G17320.1 29.902 408 205 13 59 394 18 416 1.29e-35 142
Msa0040700 AT1G34650.1 29.897 388 204 9 74 394 23 409 4.06e-35 140
Msa0040700 AT4G25530.1 27.735 393 203 9 54 394 30 393 5.19e-32 131
Msa0040700 AT4G25530.1 32.450 151 93 2 394 544 541 682 1.02e-14 77.8

Find 124 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCTTCAATCGGTTATT+TGG 0.114581 1_1:-70979423 Msa0040700:CDS
CTCTTGCTGGATCCCCTTTA+TGG 0.142742 1_1:-70977952 Msa0040700:CDS
GAGCTTCATTTCTAGAATTT+TGG 0.158862 1_1:+70979384 None:intergenic
CCCCGTGAGTTTCGGACTTT+TGG 0.171515 1_1:+70977874 None:intergenic
CATTATCCTTTACCTTAATT+TGG 0.181539 1_1:+70979052 None:intergenic
AATTGAGAATGCTAGATTAA+AGG 0.219959 1_1:-70978392 Msa0040700:CDS
GACATTTCACCAATAGAAAT+TGG 0.229853 1_1:+70978436 None:intergenic
GAAGCACCACCATATTATTT+TGG 0.238800 1_1:+70974606 None:intergenic
CGTCCCTCAAAAGATCATTT+TGG 0.241359 1_1:+70978536 None:intergenic
GGAAGCAAAGCAACAAAATT+TGG 0.246586 1_1:+70974494 None:intergenic
GAGGATGATCAACCACATTT+TGG 0.247548 1_1:+70979489 None:intergenic
GAAATTGGATCAGTACAATT+TGG 0.256467 1_1:+70978451 None:intergenic
GTTGATGGTGGTTAGGATCT+TGG 0.260432 1_1:+70979345 None:intergenic
GTTTCCTTTGCTTGCCATTA+GGG 0.283292 1_1:+70979139 None:intergenic
TGTTTCCTTTGCTTGCCATT+AGG 0.288076 1_1:+70979138 None:intergenic
TAATCTCATTGATATCCTTA+TGG 0.293429 1_1:-70977801 Msa0040700:CDS
AGAAGCACCAAGAAGGGATA+TGG 0.307095 1_1:-70976680 Msa0040700:CDS
CTTCTTTGTTGATGGTGGTT+AGG 0.308209 1_1:+70979338 None:intergenic
TGTACTGATCCAATTTCTAT+TGG 0.313025 1_1:-70978445 Msa0040700:CDS
CCACTGCCCATATCCCTTCT+TGG 0.314521 1_1:+70976673 None:intergenic
GTTGCTTTGTCAAAATCATT+AGG 0.315448 1_1:+70978022 None:intergenic
TCTAAGTTGATTGTCGTTAG+AGG 0.316867 1_1:+70978414 None:intergenic
AGAACTTGCTGTGGTTTCTA+TGG 0.322944 1_1:-70977993 Msa0040700:CDS
ATTTATGCTCCGGTTGATAT+TGG 0.334121 1_1:-70974548 Msa0040700:CDS
ATCTACACCTGCATTTGAAA+TGG 0.335392 1_1:-70978125 Msa0040700:CDS
AAACAAGCGCAACCAAATTA+AGG 0.338062 1_1:-70979064 Msa0040700:intron
AATGAGATTAATATGATTCA+TGG 0.340541 1_1:+70977814 None:intergenic
TCTACTCTTCTTGTTGGACT+TGG 0.352812 1_1:+70974356 None:intergenic
CTCACAATGTTAACTCTTGC+TGG 0.354778 1_1:-70977965 Msa0040700:CDS
GAATTTAACCCCGTGAGTTT+CGG 0.355247 1_1:+70977866 None:intergenic
TGCTGAAAATGAGATCTATA+AGG 0.357589 1_1:-70978497 Msa0040700:CDS
AGTTACTTCTTCTTTGTTGA+TGG 0.359122 1_1:+70979330 None:intergenic
CAATGCTACTTTGATCCGTT+TGG 0.373909 1_1:+70974289 None:intergenic
ATAACACATGGTCGTGATCT+TGG 0.375211 1_1:-70974805 Msa0040700:CDS
TAATTGCGACCAAAATAATA+TGG 0.382978 1_1:-70974615 Msa0040700:CDS
CAGTGGGATGTTCTTTCCGT+TGG 0.395595 1_1:-70974853 Msa0040700:CDS
GTTCTCAATTGTGCCCTATC+GGG 0.401218 1_1:+70974452 None:intergenic
ATGTACTACTACTTGGTTGC+AGG 0.403605 1_1:+70976631 None:intergenic
TTTGTTGCTTTGCTTCCCTC+TGG 0.413727 1_1:-70974488 Msa0040700:CDS
AACAAAGAAGAAGTAACTTT+CGG 0.420411 1_1:-70979325 Msa0040700:CDS
TTCTGAATCTTCAAGAGAAT+CGG 0.421428 1_1:-70977846 Msa0040700:CDS
TCATTGGTGGAAATCCATAA+AGG 0.424927 1_1:+70977938 None:intergenic
TGTGATGGCAATGACCCCTT+AGG 0.427537 1_1:-70978058 Msa0040700:CDS
CATACCTTTGAACAACCATT+TGG 0.429043 1_1:+70976567 None:intergenic
AGTGGGATGTTCTTTCCGTT+GGG 0.429047 1_1:-70974852 Msa0040700:CDS
GGCAGTGGTTGATGTTTCCT+TGG 0.429868 1_1:-70976658 Msa0040700:CDS
CGTGTCAATGTACTACTACT+TGG 0.431548 1_1:+70976624 None:intergenic
TCTGTGAATGCAATCTTAAA+TGG 0.432736 1_1:-70974524 Msa0040700:CDS
CCCAAAAGTCCGAAACTCAC+GGG 0.438000 1_1:-70977875 Msa0040700:CDS
GCTGAAAATGAGATCTATAA+GGG 0.438376 1_1:-70978496 Msa0040700:CDS
GGTTCTCAATTGTGCCCTAT+CGG 0.442618 1_1:+70974451 None:intergenic
GTTTAGAATCTCAGTGTCAT+TGG 0.442788 1_1:+70977922 None:intergenic
ATCAACATCACTTCTTCAAT+CGG 0.448285 1_1:-70979431 Msa0040700:CDS
GAGCAATGCCCTCTCCCTAA+TGG 0.448625 1_1:-70979153 Msa0040700:CDS
ATGCTTAATTATGTTGAACT+TGG 0.451961 1_1:-70974419 Msa0040700:CDS
CATTGGTGGAAATCCATAAA+GGG 0.456139 1_1:+70977939 None:intergenic
TACTTCTTCTTTGTTGATGG+TGG 0.456523 1_1:+70979333 None:intergenic
CTTAATTATGTTGAACTTGG+AGG 0.468920 1_1:-70974416 Msa0040700:CDS
TCTACACCTGCATTTGAAAT+GGG 0.468937 1_1:-70978124 Msa0040700:CDS
CTCACATGTTATTTATGCTC+CGG 0.470973 1_1:-70974558 Msa0040700:CDS
CAAAATCATTAGGAATTGAG+AGG 0.481538 1_1:+70978032 None:intergenic
AGTAAACGATGTAGATCTAG+TGG 0.483303 1_1:-70978173 Msa0040700:CDS
CTTTGCTTGCCATTAGGGAG+AGG 0.485297 1_1:+70979144 None:intergenic
ATTGAAGAAGTGATGTTGAT+TGG 0.487313 1_1:+70979434 None:intergenic
GCATGTCTCGAAATTGTTGT+TGG 0.489021 1_1:+70979456 None:intergenic
TTCACAGAACCAATATCAAC+CGG 0.493030 1_1:+70974539 None:intergenic
TGTTGTTGGTGTACTGATTG+AGG 0.500312 1_1:+70979470 None:intergenic
TTTGCTTGCCATTAGGGAGA+GGG 0.507766 1_1:+70979145 None:intergenic
CACCTACGCAAATCAAGTCC+TGG 0.510955 1_1:-70979092 Msa0040700:CDS
TTAATTCAAGAACTACCAAA+TGG 0.513476 1_1:-70976582 Msa0040700:CDS
GAAGCACCAAGAAGGGATAT+GGG 0.516565 1_1:-70976679 Msa0040700:CDS
AGGAATTGAGAGGGACCCTA+AGG 0.522532 1_1:+70978042 None:intergenic
AAACAATTGAGTTGTGAGCT+AGG 0.524320 1_1:-70979120 Msa0040700:CDS
CCACTTCCCATTTCAAATGC+AGG 0.528835 1_1:+70978118 None:intergenic
TCCCAAAAGTCCGAAACTCA+CGG 0.534087 1_1:-70977876 Msa0040700:CDS
TAAACGAAGTTGAATACCCT+AGG 0.535905 1_1:-70977904 Msa0040700:CDS
TCTTAGATTGAAATGTTCAC+AGG 0.536806 1_1:-70978202 Msa0040700:intron
GTGGGATGTTCTTTCCGTTG+GGG 0.539001 1_1:-70974851 Msa0040700:CDS
GTGATGGCAATGACCCCTTA+GGG 0.541659 1_1:-70978057 Msa0040700:CDS
TGTTACTCACCACATCCATA+AGG 0.542549 1_1:+70977786 None:intergenic
AATTGAAAGGAAAATGGTTG+AGG 0.544455 1_1:-70979534 None:intergenic
TATTCTAAGAAGCACCAAGA+AGG 0.548624 1_1:-70976687 Msa0040700:CDS
GAATGCTAGATTAAAGGTTG+AGG 0.549279 1_1:-70978386 Msa0040700:intron
CTGAAAATGAGATCTATAAG+GGG 0.550420 1_1:-70978495 Msa0040700:CDS
TTGACACGAAGACGACCCTC+TGG 0.556162 1_1:-70976609 Msa0040700:CDS
CGAGCAGGAACCAGTGGTGA+AGG 0.561584 1_1:+70976729 None:intergenic
TATATGCATGCAGACACAAC+AGG 0.563812 1_1:-70978566 Msa0040700:intron
CCTGCATTTGAAATGGGAAG+TGG 0.564061 1_1:-70978118 Msa0040700:CDS
AACGATTGTAGAACTTGCTG+TGG 0.564853 1_1:-70978002 Msa0040700:CDS
GGTTAGGATCTTGGTCTCGA+AGG 0.567881 1_1:+70979354 None:intergenic
CATTGATATCCTTATGGATG+TGG 0.570663 1_1:-70977795 Msa0040700:intron
CAAACGGATCAAAGTAGCAT+TGG 0.575903 1_1:-70974288 Msa0040700:CDS
TAGAATCTCAGTGTCATTGG+TGG 0.577352 1_1:+70977925 None:intergenic
CCAAGAAGGGATATGGGCAG+TGG 0.578162 1_1:-70976673 Msa0040700:CDS
ATTCTAAGAAGCACCAAGAA+GGG 0.578884 1_1:-70976686 Msa0040700:CDS
TGGGATGTTCTTTCCGTTGG+GGG 0.579262 1_1:-70974850 Msa0040700:CDS
TTCTCAATTGTGCCCTATCG+GGG 0.581221 1_1:+70974453 None:intergenic
ACTTGCTGTGGTTTCTATGG+AGG 0.581567 1_1:-70977990 Msa0040700:CDS
AAACGAAGTTGAATACCCTA+GGG 0.587167 1_1:-70977903 Msa0040700:CDS
TAGTTAAGAACACAACCAAA+CGG 0.589021 1_1:-70974304 Msa0040700:CDS
GTTAGGATCTTGGTCTCGAA+GGG 0.591139 1_1:+70979355 None:intergenic
AACAATGTCACACCAAAATG+TGG 0.593921 1_1:-70979501 Msa0040700:CDS
ACTACCAAATGGTTGTTCAA+AGG 0.598187 1_1:-70976571 Msa0040700:intron
ACTTGGTTGCAGGTGATCCA+AGG 0.598845 1_1:+70976641 None:intergenic
TCTTGAATTAAACAACCAGA+GGG 0.610220 1_1:+70976594 None:intergenic
AGGGCACAATTGAGAACCAC+AGG 0.611548 1_1:-70974446 Msa0040700:CDS
CTCTCCCTAATGGCAAGCAA+AGG 0.612273 1_1:-70979143 Msa0040700:CDS
GGAATTGAGAGGGACCCTAA+GGG 0.613172 1_1:+70978043 None:intergenic
AGTTCAACATAATTAAGCAT+AGG 0.615403 1_1:+70974422 None:intergenic
AAAATCATTAGGAATTGAGA+GGG 0.623957 1_1:+70978033 None:intergenic
CCAAAAGTCCGAAACTCACG+GGG 0.627216 1_1:-70977874 Msa0040700:CDS
TTCTTGAATTAAACAACCAG+AGG 0.628816 1_1:+70976593 None:intergenic
ATAGAAGAATTGTATTGTGA+TGG 0.630421 1_1:-70978073 Msa0040700:CDS
ATAATTAAGCATAGGTCCTG+TGG 0.640980 1_1:+70974430 None:intergenic
GTAAACGATGTAGATCTAGT+GGG 0.648604 1_1:-70978172 Msa0040700:CDS
ATTGGTGGAAATCCATAAAG+GGG 0.655135 1_1:+70977940 None:intergenic
TTGCGACCAAAATAATATGG+TGG 0.657066 1_1:-70974612 Msa0040700:CDS
GAATTGAGAGGGACCCTAAG+GGG 0.659587 1_1:+70978044 None:intergenic
AACCAGGACTTGATTTGCGT+AGG 0.662723 1_1:+70979090 None:intergenic
GGGGAGAATAACAAAACCAG+AGG 0.682229 1_1:+70974472 None:intergenic
GGGAGAATAACAAAACCAGA+GGG 0.693191 1_1:+70974473 None:intergenic
GAAATGGAACACATAACACA+TGG 0.699091 1_1:-70974817 Msa0040700:CDS
GTGAATGCAATCTTAAATGG+TGG 0.703104 1_1:-70974521 Msa0040700:CDS
TGAAAATGAGATCTATAAGG+GGG 0.713933 1_1:-70978494 Msa0040700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTAATTATCTAAAAAA+AGG + chr1_1:70974551-70974570 None:intergenic 10.0%
!!! TAGTACAAATTTATTTTTAA+GGG + chr1_1:70974806-70974825 None:intergenic 10.0%
!!! ATGTAAATTTTTACTTATTT+TGG - chr1_1:70974955-70974974 Msa0040700:intron 10.0%
!!! TTTTTTAAACTAAATCAAAA+AGG + chr1_1:70976285-70976304 None:intergenic 10.0%
!! TTAAAAAAAAAAAAAAAGTG+GGG + chr1_1:70976848-70976867 None:intergenic 10.0%
!! CTTAAAAAAAAAAAAAAAGT+GGG + chr1_1:70976849-70976868 None:intergenic 10.0%
!!! CACTTTTTTTTTTTTTTTAA+GGG - chr1_1:70976848-70976867 Msa0040700:intron 10.0%
!! AATGTAAATTGTTAAATATA+TGG + chr1_1:70977345-70977364 None:intergenic 10.0%
!!! ATTTTTATTGTTTTTTGAAA+AGG - chr1_1:70977887-70977906 Msa0040700:CDS 10.0%
!! AAAAAAAAATTATAATTGCA+TGG + chr1_1:70978054-70978073 None:intergenic 10.0%
!!! GTAGTACAAATTTATTTTTA+AGG + chr1_1:70974807-70974826 None:intergenic 15.0%
!!! TAAATTTTTACTTATTTTGG+TGG - chr1_1:70974958-70974977 Msa0040700:intron 15.0%
!!! ACATTAATGTATTTTCATTT+TGG - chr1_1:70975113-70975132 Msa0040700:intron 15.0%
!!! AAGATATCAATAATTTTCAT+AGG - chr1_1:70976028-70976047 Msa0040700:intron 15.0%
!!! ATAATATTGCAATTTTCTAT+TGG - chr1_1:70976127-70976146 Msa0040700:intron 15.0%
!!! AAAAGTACAAGAATTTTTTT+AGG - chr1_1:70976554-70976573 Msa0040700:intron 15.0%
!!! AAAGTACAAGAATTTTTTTA+GGG - chr1_1:70976555-70976574 Msa0040700:intron 15.0%
!! TAAAAAAAAAAAAAAAGTGG+GGG + chr1_1:70976847-70976866 None:intergenic 15.0%
!! CCTTAAAAAAAAAAAAAAAG+TGG + chr1_1:70976850-70976869 None:intergenic 15.0%
!!! CCACTTTTTTTTTTTTTTTA+AGG - chr1_1:70976847-70976866 Msa0040700:intron 15.0%
!! GTTATTAAAGATTTATAGAA+TGG + chr1_1:70977493-70977512 None:intergenic 15.0%
!! TATAAATCTTTAATAACTTC+TGG - chr1_1:70977496-70977515 Msa0040700:intron 15.0%
!! ATTAAAAATATATACCACAA+TGG + chr1_1:70977615-70977634 None:intergenic 15.0%
!!! CTATGTGTATATTAAAATTT+TGG + chr1_1:70977785-70977804 None:intergenic 15.0%
!!! CAAAATTTTAATATACACAT+AGG - chr1_1:70977783-70977802 Msa0040700:intron 15.0%
!!! TTATAATGGAAAAATAAAGA+AGG + chr1_1:70977931-70977950 None:intergenic 15.0%
!! AAAATGGTCAATAATTATAA+TGG + chr1_1:70977945-70977964 None:intergenic 15.0%
!!! CAACTATTTTTAAATTAACA+AGG - chr1_1:70978179-70978198 Msa0040700:CDS 15.0%
!! TTTATAACATTATAACATCA+CGG + chr1_1:70978725-70978744 None:intergenic 15.0%
!! AACTAGAATATATATAATCT+TGG + chr1_1:70979074-70979093 None:intergenic 15.0%
!!! TTTTTGTTTATAATTGAGAC+TGG + chr1_1:70974832-70974851 None:intergenic 20.0%
!! CATTCAATAACTAATGTATT+TGG - chr1_1:70974889-70974908 Msa0040700:intron 20.0%
!! GATAATGCATAAAATATGAT+AGG + chr1_1:70975006-70975025 None:intergenic 20.0%
!!! TTTATTTCTCATTTTCTTGT+TGG - chr1_1:70975531-70975550 Msa0040700:intron 20.0%
!!! AGATATTTGATCAATTTTAG+AGG + chr1_1:70975651-70975670 None:intergenic 20.0%
!! AATGAGATTAATATGATTCA+TGG + chr1_1:70975981-70976000 None:intergenic 20.0%
!!! AAGTACAAGAATTTTTTTAG+GGG - chr1_1:70976556-70976575 Msa0040700:intron 20.0%
!! GTTCAAAAACAATAGATAAA+AGG + chr1_1:70976636-70976655 None:intergenic 20.0%
!!! TCTATTGTTTTTGAACTTTT+TGG - chr1_1:70976640-70976659 Msa0040700:CDS 20.0%
!!! TGTTTTTTAAAGTCGAATTT+GGG + chr1_1:70976802-70976821 None:intergenic 20.0%
!!! TTGTTTTTTAAAGTCGAATT+TGG + chr1_1:70976803-70976822 None:intergenic 20.0%
!! AAAAAAAAAAAAAAAGTGGG+GGG + chr1_1:70976846-70976865 None:intergenic 20.0%
!!! ATAGATGTTACAATTCATTT+TGG + chr1_1:70977415-70977434 None:intergenic 20.0%
!! ATGAATTGTAACATCTATTT+AGG - chr1_1:70977417-70977436 Msa0040700:intron 20.0%
!! TCCTTAATTAATGCTAATTT+CGG + chr1_1:70977716-70977735 None:intergenic 20.0%
!! AAAAATGAATAAGACAAAAG+TGG + chr1_1:70978311-70978330 None:intergenic 20.0%
!!! TGTCTTATTCATTTTTTAAG+TGG - chr1_1:70978315-70978334 Msa0040700:intron 20.0%
!!! GTCTTATTCATTTTTTAAGT+GGG - chr1_1:70978316-70978335 Msa0040700:intron 20.0%
!! TTATAACATTATAACATCAC+GGG + chr1_1:70978724-70978743 None:intergenic 20.0%
!!! ATGATTTGATTCTTTCATTT+TGG - chr1_1:70978847-70978866 Msa0040700:intron 20.0%
!!! ATTTTGTTGAATTTTACAGT+GGG - chr1_1:70978923-70978942 Msa0040700:intron 20.0%
!! ATAAAATTTGAGAGAAAGTT+AGG + chr1_1:70979106-70979125 None:intergenic 20.0%
! AACAAAGAAGAAGTAACTTT+CGG - chr1_1:70974467-70974486 Msa0040700:CDS 25.0%
!! TCTAAAAAAAGGAAGAGTAT+TGG + chr1_1:70974540-70974559 None:intergenic 25.0%
! CATTATCCTTTACCTTAATT+TGG + chr1_1:70974743-70974762 None:intergenic 25.0%
! TAAGATCTCACATTTCAAAA+GGG + chr1_1:70974770-70974789 None:intergenic 25.0%
! CATTCAATAACCAATGTATT+TGG + chr1_1:70974927-70974946 None:intergenic 25.0%
!!! ATTTTTACTTATTTTGGTGG+TGG - chr1_1:70974961-70974980 Msa0040700:intron 25.0%
! CATAAAATATGATAGGTTCT+TGG + chr1_1:70974999-70975018 None:intergenic 25.0%
! CAAATTATAGTGACACAATT+TGG + chr1_1:70975189-70975208 None:intergenic 25.0%
! AATTGAGAATGCTAGATTAA+AGG - chr1_1:70975400-70975419 Msa0040700:intron 25.0%
!!! TATTTGATCAATTTTAGAGG+AGG + chr1_1:70975648-70975667 None:intergenic 25.0%
! ATAGAAGAATTGTATTGTGA+TGG - chr1_1:70975719-70975738 Msa0040700:intron 25.0%
! AAAATCATTAGGAATTGAGA+GGG + chr1_1:70975762-70975781 None:intergenic 25.0%
! TAATCTCATTGATATCCTTA+TGG - chr1_1:70975991-70976010 Msa0040700:intron 25.0%
!!! AGTACAAGAATTTTTTTAGG+GGG - chr1_1:70976557-70976576 Msa0040700:intron 25.0%
!!! TTGTTTTTGAACTTTTTGGT+CGG - chr1_1:70976644-70976663 Msa0040700:CDS 25.0%
! ATGATCAAGTGTTTATAAGT+GGG + chr1_1:70976715-70976734 None:intergenic 25.0%
! TTAAACCATCTAAGAATTTG+TGG - chr1_1:70976761-70976780 Msa0040700:intron 25.0%
!!! GTTTTTTAAAGTCGAATTTG+GGG + chr1_1:70976801-70976820 None:intergenic 25.0%
! TTAATTCAAGAACTACCAAA+TGG - chr1_1:70977210-70977229 Msa0040700:intron 25.0%
!! TGTTAAATATATGGTTTGCA+TGG + chr1_1:70977336-70977355 None:intergenic 25.0%
!! TAACATCTATTTAGGTTACA+TGG - chr1_1:70977425-70977444 Msa0040700:intron 25.0%
!! AACATCTATTTAGGTTACAT+GGG - chr1_1:70977426-70977445 Msa0040700:intron 25.0%
!!! ATCTATCTTTTTCAAGAAGT+CGG - chr1_1:70977681-70977700 Msa0040700:intron 25.0%
! ACCGAAATTAGCATTAATTA+AGG - chr1_1:70977712-70977731 Msa0040700:intron 25.0%
! TGCTAATAAGTAGATGAAAA+TGG + chr1_1:70977961-70977980 None:intergenic 25.0%
!!! TTTTTTTTATCAGAGCTTCT+AGG + chr1_1:70978222-70978241 None:intergenic 25.0%
! AAGTGTTAACATCTATGTAA+GGG - chr1_1:70978516-70978535 Msa0040700:CDS 25.0%
! AAATCAAAATTCAAGAAGTG+AGG - chr1_1:70978651-70978670 Msa0040700:intron 25.0%
!! CATTTTGTTGAATTTTACAG+TGG - chr1_1:70978922-70978941 Msa0040700:intron 25.0%
! ATTAATTGACAGTTACCAAA+AGG + chr1_1:70979147-70979166 None:intergenic 25.0%
! TAATTGCGACCAAAATAATA+TGG - chr1_1:70979177-70979196 Msa0040700:intron 25.0%
! AGTTCAACATAATTAAGCAT+AGG + chr1_1:70979373-70979392 None:intergenic 25.0%
! ATGCTTAATTATGTTGAACT+TGG - chr1_1:70979373-70979392 Msa0040700:CDS 25.0%
ATTGAAGAAGTGATGTTGAT+TGG + chr1_1:70974361-70974380 None:intergenic 30.0%
ATCAACATCACTTCTTCAAT+CGG - chr1_1:70974361-70974380 Msa0040700:CDS 30.0%
!!! GAGCTTCATTTCTAGAATTT+TGG + chr1_1:70974411-70974430 None:intergenic 30.0%
AGTTACTTCTTCTTTGTTGA+TGG + chr1_1:70974465-70974484 None:intergenic 30.0%
GCAAAAACAGATTCAAGAAA+TGG - chr1_1:70974495-70974514 Msa0040700:CDS 30.0%
ATTCAAGAAATGGAATCGTA+GGG - chr1_1:70974505-70974524 Msa0040700:CDS 30.0%
! CATCAATTTGTGATGTTTTC+AGG - chr1_1:70974610-70974629 Msa0040700:CDS 30.0%
GTAAGATCTCACATTTCAAA+AGG + chr1_1:70974771-70974790 None:intergenic 30.0%
TTGTTTATAATTGAGACTGG+AGG + chr1_1:70974829-70974848 None:intergenic 30.0%
GTAATACAGACCAAATACAT+TGG - chr1_1:70974914-70974933 Msa0040700:intron 30.0%
TTACTTATAACTGATACCGA+TGG - chr1_1:70975063-70975082 Msa0040700:intron 30.0%
AATTTAAAGACGTACTCCAT+CGG + chr1_1:70975082-70975101 None:intergenic 30.0%
! TTCACCAAAATGATCTTTTG+AGG - chr1_1:70975252-70975271 Msa0040700:intron 30.0%
! TCACCAAAATGATCTTTTGA+GGG - chr1_1:70975253-70975272 Msa0040700:intron 30.0%
TGCTGAAAATGAGATCTATA+AGG - chr1_1:70975295-70975314 Msa0040700:intron 30.0%
GCTGAAAATGAGATCTATAA+GGG - chr1_1:70975296-70975315 Msa0040700:intron 30.0%
CTGAAAATGAGATCTATAAG+GGG - chr1_1:70975297-70975316 Msa0040700:intron 30.0%
TGAAAATGAGATCTATAAGG+GGG - chr1_1:70975298-70975317 Msa0040700:intron 30.0%
GAAATTGGATCAGTACAATT+TGG + chr1_1:70975344-70975363 None:intergenic 30.0%
! TGTACTGATCCAATTTCTAT+TGG - chr1_1:70975347-70975366 Msa0040700:intron 30.0%
GACATTTCACCAATAGAAAT+TGG + chr1_1:70975359-70975378 None:intergenic 30.0%
! ATTTTATATACACAGTGCAC+TGG + chr1_1:70975507-70975526 None:intergenic 30.0%
! TTTCTTGTTGGTTGAACTAA+TGG - chr1_1:70975543-70975562 Msa0040700:intron 30.0%
TCTTAGATTGAAATGTTCAC+AGG - chr1_1:70975590-70975609 Msa0040700:intron 30.0%
CAAAATCATTAGGAATTGAG+AGG + chr1_1:70975763-70975782 None:intergenic 30.0%
! GTTGCTTTGTCAAAATCATT+AGG + chr1_1:70975773-70975792 None:intergenic 30.0%
TTCTGAATCTTCAAGAGAAT+CGG - chr1_1:70975946-70975965 Msa0040700:intron 30.0%
! AAGTTTTCTATCACCACTTT+TGG + chr1_1:70976527-70976546 None:intergenic 30.0%
!! TGTTTTTGAACTTTTTGGTC+GGG - chr1_1:70976645-70976664 Msa0040700:CDS 30.0%
TGATCAAGTGTTTATAAGTG+GGG + chr1_1:70976714-70976733 None:intergenic 30.0%
CATGATCAAGTGTTTATAAG+TGG + chr1_1:70976716-70976735 None:intergenic 30.0%
AATGTTACAAAGTCTGACAT+TGG + chr1_1:70976911-70976930 None:intergenic 30.0%
TCTTGAATTAAACAACCAGA+GGG + chr1_1:70977201-70977220 None:intergenic 30.0%
TTCTTGAATTAAACAACCAG+AGG + chr1_1:70977202-70977221 None:intergenic 30.0%
GTATTGTATGATGTTGAGAA+TGG - chr1_1:70977286-70977305 Msa0040700:intron 30.0%
! TAAATATATGGTTTGCATGG+TGG + chr1_1:70977333-70977352 None:intergenic 30.0%
!!! TTTTTTTCTAGTTCCCTCTA+CGG - chr1_1:70978067-70978086 Msa0040700:CDS 30.0%
AGTCTTCAATGACAGTTTAT+TGG - chr1_1:70978106-70978125 Msa0040700:CDS 30.0%
GTCTTCAATGACAGTTTATT+GGG - chr1_1:70978107-70978126 Msa0040700:CDS 30.0%
AATGAATAAGACAAAAGTGG+AGG + chr1_1:70978308-70978327 None:intergenic 30.0%
! GAAGTGTTAACATCTATGTA+AGG - chr1_1:70978515-70978534 Msa0040700:CDS 30.0%
! TTAGTGTTGGAACTTCTATT+TGG - chr1_1:70978590-70978609 Msa0040700:intron 30.0%
TGAGATTCATATCATTTGCT+AGG + chr1_1:70978780-70978799 None:intergenic 30.0%
! TGCTACTTAGCTTCAATATA+AGG + chr1_1:70978873-70978892 None:intergenic 30.0%
TTCTTTAATTATACCCCCAA+CGG + chr1_1:70978958-70978977 None:intergenic 30.0%
! TGGGGGTATAATTAAAGAAA+TGG - chr1_1:70978959-70978978 Msa0040700:intron 30.0%
!! TTTTCACCTAAAGTACCTTT+TGG - chr1_1:70979129-70979148 Msa0040700:CDS 30.0%
TAACTGTCAATTAATTGCAG+AGG - chr1_1:70979152-70979171 Msa0040700:CDS 30.0%
AACTGTCAATTAATTGCAGA+GGG - chr1_1:70979153-70979172 Msa0040700:CDS 30.0%
TCTGTGAATGCAATCTTAAA+TGG - chr1_1:70979268-70979287 Msa0040700:intron 30.0%
CTTAATTATGTTGAACTTGG+AGG - chr1_1:70979376-70979395 Msa0040700:CDS 30.0%
! TCATTTTCTACTCTTCTTGT+TGG + chr1_1:70979445-70979464 None:intergenic 30.0%
TAGTTAAGAACACAACCAAA+CGG - chr1_1:70979488-70979507 Msa0040700:CDS 30.0%
AACAATGTCACACCAAAATG+TGG - chr1_1:70974291-70974310 Msa0040700:CDS 35.0%
CACTTCTTCAATCGGTTATT+TGG - chr1_1:70974369-70974388 Msa0040700:CDS 35.0%
! TACTTCTTCTTTGTTGATGG+TGG + chr1_1:70974462-70974481 None:intergenic 35.0%
GATTCAAGAAATGGAATCGT+AGG - chr1_1:70974504-70974523 Msa0040700:CDS 35.0%
! AAACAATTGAGTTGTGAGCT+AGG - chr1_1:70974672-70974691 Msa0040700:intron 35.0%
AAACAAGCGCAACCAAATTA+AGG - chr1_1:70974728-70974747 Msa0040700:intron 35.0%
AATGTGAGATCTTACATGCA+CGG - chr1_1:70974776-70974795 Msa0040700:intron 35.0%
!! TCTAAGTTGATTGTCGTTAG+AGG + chr1_1:70975381-70975400 None:intergenic 35.0%
GAATGCTAGATTAAAGGTTG+AGG - chr1_1:70975406-70975425 Msa0040700:intron 35.0%
AGTAAACGATGTAGATCTAG+TGG - chr1_1:70975619-70975638 Msa0040700:intron 35.0%
GTAAACGATGTAGATCTAGT+GGG - chr1_1:70975620-70975639 Msa0040700:intron 35.0%
ATCTACACCTGCATTTGAAA+TGG - chr1_1:70975667-70975686 Msa0040700:intron 35.0%
! TCTACACCTGCATTTGAAAT+GGG - chr1_1:70975668-70975687 Msa0040700:intron 35.0%
ATTGGTGGAAATCCATAAAG+GGG + chr1_1:70975855-70975874 None:intergenic 35.0%
CATTGGTGGAAATCCATAAA+GGG + chr1_1:70975856-70975875 None:intergenic 35.0%
TCATTGGTGGAAATCCATAA+AGG + chr1_1:70975857-70975876 None:intergenic 35.0%
! GTTTAGAATCTCAGTGTCAT+TGG + chr1_1:70975873-70975892 None:intergenic 35.0%
TAAACGAAGTTGAATACCCT+AGG - chr1_1:70975888-70975907 Msa0040700:intron 35.0%
AAACGAAGTTGAATACCCTA+GGG - chr1_1:70975889-70975908 Msa0040700:intron 35.0%
CATTGATATCCTTATGGATG+TGG - chr1_1:70975997-70976016 Msa0040700:intron 35.0%
!!! GGCAATGATTTTAGAGTCAA+TGG - chr1_1:70976148-70976167 Msa0040700:intron 35.0%
CTTGAGATGACTTAAAAGCA+TGG - chr1_1:70976500-70976519 Msa0040700:intron 35.0%
! TTAAAAGCATGGACCAAAAG+TGG - chr1_1:70976511-70976530 Msa0040700:intron 35.0%
TCTAACACAACCACACAAAA+CGG - chr1_1:70976668-70976687 Msa0040700:CDS 35.0%
GATCAAGTGTTTATAAGTGG+GGG + chr1_1:70976713-70976732 None:intergenic 35.0%
GTCAACCACAAATTCTTAGA+TGG + chr1_1:70976769-70976788 None:intergenic 35.0%
! AATCAGCTGACATCTGAAAT+AGG + chr1_1:70977035-70977054 None:intergenic 35.0%
!! TATTCTAAGAAGCACCAAGA+AGG - chr1_1:70977105-70977124 Msa0040700:intron 35.0%
!! ATTCTAAGAAGCACCAAGAA+GGG - chr1_1:70977106-70977125 Msa0040700:intron 35.0%
ACTACCAAATGGTTGTTCAA+AGG - chr1_1:70977221-70977240 Msa0040700:intron 35.0%
CATACCTTTGAACAACCATT+TGG + chr1_1:70977228-70977247 None:intergenic 35.0%
! ATAACTTCTGGTCTTTCCTT+TGG - chr1_1:70977508-70977527 Msa0040700:intron 35.0%
TTCACATTGTCTACCTAATG+AGG + chr1_1:70977551-70977570 None:intergenic 35.0%
TCCAAACAAAAAACCGTAGA+GGG + chr1_1:70978083-70978102 None:intergenic 35.0%
ATCCAAACAAAAAACCGTAG+AGG + chr1_1:70978084-70978103 None:intergenic 35.0%
TCAGAACATATACGACATCA+TGG - chr1_1:70978148-70978167 Msa0040700:CDS 35.0%
CACATATATGCAATACACAG+TGG - chr1_1:70978391-70978410 Msa0040700:CDS 35.0%
ACAGTGGTAAATAGTCTTCA+AGG - chr1_1:70978407-70978426 Msa0040700:CDS 35.0%
TGGTAAATAGTCTTCAAGGA+AGG - chr1_1:70978411-70978430 Msa0040700:CDS 35.0%
GTCATGACCAAAACAAGTAT+TGG - chr1_1:70978538-70978557 Msa0040700:CDS 35.0%
! AGGTTCACCAATACTTGTTT+TGG + chr1_1:70978548-70978567 None:intergenic 35.0%
!! AAAACAAGTATTGGTGAACC+TGG - chr1_1:70978547-70978566 Msa0040700:CDS 35.0%
ACACTAAGAACAATACCAGT+AGG + chr1_1:70978577-70978596 None:intergenic 35.0%
ACTGGTATTGTTCTTAGTGT+TGG - chr1_1:70978577-70978596 Msa0040700:intron 35.0%
AGAAAATCAAAAAGCCTCCT+TGG + chr1_1:70978628-70978647 None:intergenic 35.0%
!!! AGGAGGCTTTTTGATTTTCT+TGG - chr1_1:70978628-70978647 Msa0040700:intron 35.0%
! TCATATCATTTGCTAGGACA+TGG + chr1_1:70978774-70978793 None:intergenic 35.0%
ATGAATCTCAGCAAAATCAC+AGG - chr1_1:70978790-70978809 Msa0040700:intron 35.0%
TGAATCTCAGCAAAATCACA+GGG - chr1_1:70978791-70978810 Msa0040700:intron 35.0%
GAAATGGAACACATAACACA+TGG - chr1_1:70978975-70978994 Msa0040700:intron 35.0%
TTCATGTCAGCGTAAGTAAT+TGG - chr1_1:70979027-70979046 Msa0040700:intron 35.0%
!! CAGTTACCAAAAGGTACTTT+AGG + chr1_1:70979138-70979157 None:intergenic 35.0%
TTGCGACCAAAATAATATGG+TGG - chr1_1:70979180-70979199 Msa0040700:intron 35.0%
!! GAAGCACCACCATATTATTT+TGG + chr1_1:70979189-70979208 None:intergenic 35.0%
! CTCACATGTTATTTATGCTC+CGG - chr1_1:70979234-70979253 Msa0040700:intron 35.0%
! ATTTATGCTCCGGTTGATAT+TGG - chr1_1:70979244-70979263 Msa0040700:intron 35.0%
TTCACAGAACCAATATCAAC+CGG + chr1_1:70979256-70979275 None:intergenic 35.0%
GTGAATGCAATCTTAAATGG+TGG - chr1_1:70979271-70979290 Msa0040700:intron 35.0%
GGAAGCAAAGCAACAAAATT+TGG + chr1_1:70979301-70979320 None:intergenic 35.0%
!!! TTTTGTTATTCTCCCCGATA+GGG - chr1_1:70979327-70979346 Msa0040700:CDS 35.0%
ATAATTAAGCATAGGTCCTG+TGG + chr1_1:70979365-70979384 None:intergenic 35.0%
! GAGGATGATCAACCACATTT+TGG + chr1_1:70974306-70974325 None:intergenic 40.0%
!! TGTTGTTGGTGTACTGATTG+AGG + chr1_1:70974325-70974344 None:intergenic 40.0%
GCATGTCTCGAAATTGTTGT+TGG + chr1_1:70974339-70974358 None:intergenic 40.0%
!! CTTCTTTGTTGATGGTGGTT+AGG + chr1_1:70974457-70974476 None:intergenic 40.0%
GTTTCCTTTGCTTGCCATTA+GGG + chr1_1:70974656-70974675 None:intergenic 40.0%
TGTTTCCTTTGCTTGCCATT+AGG + chr1_1:70974657-70974676 None:intergenic 40.0%
GCGCAACCAAATTAAGGTAA+AGG - chr1_1:70974734-70974753 Msa0040700:intron 40.0%
TAGGTTCTTGGTTCAAACTC+TGG + chr1_1:70974987-70975006 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG + chr1_1:70975028-70975047 None:intergenic 40.0%
TATATGCATGCAGACACAAC+AGG - chr1_1:70975226-70975245 Msa0040700:intron 40.0%
! CGTCCCTCAAAAGATCATTT+TGG + chr1_1:70975259-70975278 None:intergenic 40.0%
TTATATACACAGTGCACTGG+AGG + chr1_1:70975504-70975523 None:intergenic 40.0%
!! AACGATTGTAGAACTTGCTG+TGG - chr1_1:70975790-70975809 Msa0040700:intron 40.0%
!! AGAACTTGCTGTGGTTTCTA+TGG - chr1_1:70975799-70975818 Msa0040700:intron 40.0%
CTCACAATGTTAACTCTTGC+TGG - chr1_1:70975827-70975846 Msa0040700:intron 40.0%
! TAGAATCTCAGTGTCATTGG+TGG + chr1_1:70975870-70975889 None:intergenic 40.0%
!! GACTTTTGGGAAAAACCCTA+GGG + chr1_1:70975907-70975926 None:intergenic 40.0%
GAATTTAACCCCGTGAGTTT+CGG + chr1_1:70975929-70975948 None:intergenic 40.0%
TGTTACTCACCACATCCATA+AGG + chr1_1:70976009-70976028 None:intergenic 40.0%
ACACTTGAAGTTCTATCACC+TGG - chr1_1:70976207-70976226 Msa0040700:intron 40.0%
ATACAATGGAGCTCTACAAG+TGG - chr1_1:70976242-70976261 Msa0040700:intron 40.0%
! AAAGTCTGACATTGGTTGAG+AGG + chr1_1:70976903-70976922 None:intergenic 40.0%
!! TCAGATGTCAGCTGATTTTC+AGG - chr1_1:70977038-70977057 Msa0040700:intron 40.0%
! ACGAAATAGTTTTCACGAGC+AGG + chr1_1:70977081-70977100 None:intergenic 40.0%
ATGTACTACTACTTGGTTGC+AGG + chr1_1:70977164-70977183 None:intergenic 40.0%
CGTGTCAATGTACTACTACT+TGG + chr1_1:70977171-70977190 None:intergenic 40.0%
!! TTTCCTTTGGAGCTAAGAGA+TGG - chr1_1:70977521-70977540 Msa0040700:intron 40.0%
!! TTCCTTTGGAGCTAAGAGAT+GGG - chr1_1:70977522-70977541 Msa0040700:intron 40.0%
GTCTTCTACAGGTATGTTGT+TGG + chr1_1:70977593-70977612 None:intergenic 40.0%
ATACCTGTAGAAGACCATTG+TGG - chr1_1:70977598-70977617 Msa0040700:intron 40.0%
ATACCACAATGGTCTTCTAC+AGG + chr1_1:70977604-70977623 None:intergenic 40.0%
!!! TCCCTCTACGGTTTTTTGTT+TGG - chr1_1:70978079-70978098 Msa0040700:CDS 40.0%
!! AAGGAAGAGTTTGCTGGATT+TGG - chr1_1:70978430-70978449 Msa0040700:CDS 40.0%
!! GTATGTTTTTATGCTGCCGT+TGG - chr1_1:70978470-70978489 Msa0040700:CDS 40.0%
! TGGAACTTCTATTTGGCTTC+CGG - chr1_1:70978597-70978616 Msa0040700:intron 40.0%
GAATCTCAGCAAAATCACAG+GGG - chr1_1:70978792-70978811 Msa0040700:intron 40.0%
ATAACACATGGTCGTGATCT+TGG - chr1_1:70978987-70979006 Msa0040700:intron 40.0%
GGGAGAATAACAAAACCAGA+GGG + chr1_1:70979322-70979341 None:intergenic 40.0%
!!! GTTTTGTTATTCTCCCCGAT+AGG - chr1_1:70979326-70979345 Msa0040700:CDS 40.0%
TCTACTCTTCTTGTTGGACT+TGG + chr1_1:70979439-70979458 None:intergenic 40.0%
!! CAATGCTACTTTGATCCGTT+TGG + chr1_1:70979506-70979525 None:intergenic 40.0%
CAAACGGATCAAAGTAGCAT+TGG - chr1_1:70979504-70979523 Msa0040700:CDS 40.0%
GTTAGGATCTTGGTCTCGAA+GGG + chr1_1:70974440-70974459 None:intergenic 45.0%
!! GTTGATGGTGGTTAGGATCT+TGG + chr1_1:70974450-70974469 None:intergenic 45.0%
TTTGCTTGCCATTAGGGAGA+GGG + chr1_1:70974650-70974669 None:intergenic 45.0%
!! AACCAGGACTTGATTTGCGT+AGG + chr1_1:70974705-70974724 None:intergenic 45.0%
!!! GTTGCGCTTGTTTTGAAACC+AGG + chr1_1:70974721-70974740 None:intergenic 45.0%
CATCGTGAGCTTAACTCAGT+TGG + chr1_1:70975033-70975052 None:intergenic 45.0%
AGATTGAAGTGCGCACACTT+TGG - chr1_1:70975146-70975165 Msa0040700:intron 45.0%
CCACTTCCCATTTCAAATGC+AGG + chr1_1:70975677-70975696 None:intergenic 45.0%
! CCTGCATTTGAAATGGGAAG+TGG - chr1_1:70975674-70975693 Msa0040700:intron 45.0%
!! ACTTGCTGTGGTTTCTATGG+AGG - chr1_1:70975802-70975821 Msa0040700:intron 45.0%
!! GGACTTTTGGGAAAAACCCT+AGG + chr1_1:70975908-70975927 None:intergenic 45.0%
TCCCAAAAGTCCGAAACTCA+CGG - chr1_1:70975916-70975935 Msa0040700:intron 45.0%
! TTCTATCACCTGGAGTGTCA+GGG - chr1_1:70976217-70976236 Msa0040700:intron 45.0%
TTGTATTTCCCTGACACTCC+AGG + chr1_1:70976228-70976247 None:intergenic 45.0%
! GGAGTGTCAGGGAAATACAA+TGG - chr1_1:70976228-70976247 Msa0040700:intron 45.0%
! AACCACACAAAACGGACTTG+TGG - chr1_1:70976676-70976695 Msa0040700:CDS 45.0%
! GGACTAGTGTTCAAAAGTGG+AGG + chr1_1:70976879-70976898 None:intergenic 45.0%
!! GGTGGACTAGTGTTCAAAAG+TGG + chr1_1:70976882-70976901 None:intergenic 45.0%
!!! TTTTCAGGTTCCTTCACCAC+TGG - chr1_1:70977053-70977072 Msa0040700:intron 45.0%
!! AGAAGCACCAAGAAGGGATA+TGG - chr1_1:70977112-70977131 Msa0040700:intron 45.0%
! GAAGCACCAAGAAGGGATAT+GGG - chr1_1:70977113-70977132 Msa0040700:intron 45.0%
ATGGGTAGAGCATGTAGAAC+TGG - chr1_1:70977444-70977463 Msa0040700:intron 45.0%
AAGAGATGGGTGACCTCATT+AGG - chr1_1:70977535-70977554 Msa0040700:intron 45.0%
AGTTTATTGGGCGACGTAGA+GGG - chr1_1:70978119-70978138 Msa0040700:CDS 45.0%
TCAAGGAAGGAAGAGTTTGC+TGG - chr1_1:70978424-70978443 Msa0040700:CDS 45.0%
ACTAGCTACAGAAGGACCAA+CGG + chr1_1:70978489-70978508 None:intergenic 45.0%
TCCTTCTGTAGCTAGTTGCT+GGG - chr1_1:70978493-70978512 Msa0040700:CDS 45.0%
ACAATACCAGTAGGTGTTCC+AGG + chr1_1:70978568-70978587 None:intergenic 45.0%
AAAAGCCTCCTTGGAACAAC+CGG + chr1_1:70978619-70978638 None:intergenic 45.0%
AGTGGGATGTTCTTTCCGTT+GGG - chr1_1:70978940-70978959 Msa0040700:intron 45.0%
!! TTTGTTGCTTTGCTTCCCTC+TGG - chr1_1:70979304-70979323 Msa0040700:CDS 45.0%
GGGGAGAATAACAAAACCAG+AGG + chr1_1:70979323-70979342 None:intergenic 45.0%
TTCTCAATTGTGCCCTATCG+GGG + chr1_1:70979342-70979361 None:intergenic 45.0%
GTTCTCAATTGTGCCCTATC+GGG + chr1_1:70979343-70979362 None:intergenic 45.0%
GGTTCTCAATTGTGCCCTAT+CGG + chr1_1:70979344-70979363 None:intergenic 45.0%
!! TAAAAAAAAATAAAAATTGA+AGG + chr1_1:70977392-70977411 None:intergenic 5.0%
GGTTAGGATCTTGGTCTCGA+AGG + chr1_1:70974441-70974460 None:intergenic 50.0%
CTTTGCTTGCCATTAGGGAG+AGG + chr1_1:70974651-70974670 None:intergenic 50.0%
CTCTCCCTAATGGCAAGCAA+AGG - chr1_1:70974649-70974668 Msa0040700:intron 50.0%
CACCTACGCAAATCAAGTCC+TGG - chr1_1:70974700-70974719 Msa0040700:intron 50.0%
TGTGATGGCAATGACCCCTT+AGG - chr1_1:70975734-70975753 Msa0040700:intron 50.0%
GTGATGGCAATGACCCCTTA+GGG - chr1_1:70975735-70975754 Msa0040700:intron 50.0%
GAATTGAGAGGGACCCTAAG+GGG + chr1_1:70975751-70975770 None:intergenic 50.0%
GGAATTGAGAGGGACCCTAA+GGG + chr1_1:70975752-70975771 None:intergenic 50.0%
AGGAATTGAGAGGGACCCTA+AGG + chr1_1:70975753-70975772 None:intergenic 50.0%
CTCTTGCTGGATCCCCTTTA+TGG - chr1_1:70975840-70975859 Msa0040700:intron 50.0%
! CCCGTGAGTTTCGGACTTTT+GGG + chr1_1:70975920-70975939 None:intergenic 50.0%
CCCAAAAGTCCGAAACTCAC+GGG - chr1_1:70975917-70975936 Msa0040700:intron 50.0%
CCAAAAGTCCGAAACTCACG+GGG - chr1_1:70975918-70975937 Msa0040700:intron 50.0%
! GTTCTATCACCTGGAGTGTC+AGG - chr1_1:70976216-70976235 Msa0040700:intron 50.0%
! CACCACAAGTCCGTTTTGTG+TGG + chr1_1:70976681-70976700 None:intergenic 50.0%
! GTCTGACATTGGTTGAGAGG+TGG + chr1_1:70976900-70976919 None:intergenic 50.0%
! TTTTCACGAGCAGGAACCAG+TGG + chr1_1:70977072-70977091 None:intergenic 50.0%
! GGCAGTGGTTGATGTTTCCT+TGG - chr1_1:70977134-70977153 Msa0040700:intron 50.0%
ACTTGGTTGCAGGTGATCCA+AGG + chr1_1:70977154-70977173 None:intergenic 50.0%
TGGCTGAGGTGGGAGATTTA+AGG + chr1_1:70977313-70977332 None:intergenic 50.0%
! TATGGTTTGCATGGTGGCTG+AGG + chr1_1:70977327-70977346 None:intergenic 50.0%
CACCCATCTCTTAGCTCCAA+AGG + chr1_1:70977527-70977546 None:intergenic 50.0%
CAGTTTATTGGGCGACGTAG+AGG - chr1_1:70978118-70978137 Msa0040700:CDS 50.0%
GTCCTTCTGTAGCTAGTTGC+TGG - chr1_1:70978492-70978511 Msa0040700:CDS 50.0%
TCCCAGCAACTAGCTACAGA+AGG + chr1_1:70978497-70978516 None:intergenic 50.0%
! TTTGGCTTCCGGTTGTTCCA+AGG - chr1_1:70978608-70978627 Msa0040700:intron 50.0%
CAGTGGGATGTTCTTTCCGT+TGG - chr1_1:70978939-70978958 Msa0040700:intron 50.0%
GTGGGATGTTCTTTCCGTTG+GGG - chr1_1:70978941-70978960 Msa0040700:intron 50.0%
TGGGATGTTCTTTCCGTTGG+GGG - chr1_1:70978942-70978961 Msa0040700:intron 50.0%
AGGGCACAATTGAGAACCAC+AGG - chr1_1:70979346-70979365 Msa0040700:CDS 50.0%
GAGCAATGCCCTCTCCCTAA+TGG - chr1_1:70974639-70974658 Msa0040700:intron 55.0%
! CCCCGTGAGTTTCGGACTTT+TGG + chr1_1:70975921-70975940 None:intergenic 55.0%
CCACTGCCCATATCCCTTCT+TGG + chr1_1:70977122-70977141 None:intergenic 55.0%
CCAAGAAGGGATATGGGCAG+TGG - chr1_1:70977119-70977138 Msa0040700:intron 55.0%
TTGACACGAAGACGACCCTC+TGG - chr1_1:70977183-70977202 Msa0040700:intron 55.0%
GTTTGCATGGTGGCTGAGGT+GGG + chr1_1:70977323-70977342 None:intergenic 55.0%
GGTGAACCTGGAACACCTAC+TGG - chr1_1:70978559-70978578 Msa0040700:intron 55.0%
CGAGCAGGAACCAGTGGTGA+AGG + chr1_1:70977066-70977085 None:intergenic 60.0%
GGTTTGCATGGTGGCTGAGG+TGG + chr1_1:70977324-70977343 None:intergenic 60.0%
GGCTTCCGGTTGTTCCAAGG+AGG - chr1_1:70978611-70978630 Msa0040700:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70974271 70979543 70974271 ID=Msa0040700;Name=Msa0040700
chr1_1 mRNA 70974271 70979543 70974271 ID=Msa0040700-mRNA-1;Parent=Msa0040700;Name=Msa0040700-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|0|0|1|1|1|7|0|549
chr1_1 exon 70979293 70979543 70979293 ID=Msa0040700-mRNA-1:exon:23469;Parent=Msa0040700-mRNA-1
chr1_1 exon 70979065 70979182 70979065 ID=Msa0040700-mRNA-1:exon:23468;Parent=Msa0040700-mRNA-1
chr1_1 exon 70978387 70978575 70978387 ID=Msa0040700-mRNA-1:exon:23467;Parent=Msa0040700-mRNA-1
chr1_1 exon 70977796 70978218 70977796 ID=Msa0040700-mRNA-1:exon:23466;Parent=Msa0040700-mRNA-1
chr1_1 exon 70976572 70976772 70976572 ID=Msa0040700-mRNA-1:exon:23465;Parent=Msa0040700-mRNA-1
chr1_1 exon 70974777 70974872 70974777 ID=Msa0040700-mRNA-1:exon:23464;Parent=Msa0040700-mRNA-1
chr1_1 exon 70974271 70974642 70974271 ID=Msa0040700-mRNA-1:exon:23463;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70979293 70979543 70979293 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70979065 70979182 70979065 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70978387 70978575 70978387 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70977796 70978218 70977796 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70976572 70976772 70976572 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70974777 70974872 70974777 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
chr1_1 CDS 70974271 70974642 70974271 ID=Msa0040700-mRNA-1:cds;Parent=Msa0040700-mRNA-1
Gene Sequence

>Msa0040700

ATGGTTGAGGATGAACAACAAACAATGTCACACCAAAATGTGGTTGATCATCCTCAATCAGTACACCAACAACAATTTCGAGACATGCCAATCAACATCACTTCTTCAATCGGTTATTTGGAAAGATGTAATCAGAACCAAAATTCTAGAAATGAAGCTCTTTCTTCCCTTCGAGACCAAGATCCTAACCACCATCAACAAAGAAGAAGTAACTTTCGGCACTCGCAAAAACAGATTCAAGAAATGGAATCGTTCTTCGAGCAATGCCCTCTCCCTAATGGCAAGCAAAGGAAACAATTGAGTTGTGAGCTAGGTCTTACACCTACGCAAATCAAGTCCTGGTTTCAAAACAAGCGCAACCAAATTAAGACACAACAGGAACTTCACCAAAATGATCTTTTGAGGGACGAGAATGAGAAGCTTCGTGCTGAAAATGAGATCTATAAGGGGGCACTAAAAGACTCTTTATGTCCAAATTGTACTGATCCAATTTCTATTGGTGAAATGTCCTCTAACGACAATCAACTTAGAATTGAGAATGCTAGATTAAAGGTTGAGATTGAAATGTTCACAGGAAAGTTAGTAAACGATGTAGATCTAGTGGGTTCCTCCTCTAAAATTGATCAAATATCTACACCTGCATTTGAAATGGGAAGTGGTAGTGATATCTCTTCAAGCATGATAGAAGAATTGTATTGTGATGGCAATGACCCCTTAGGGTCCCTCTCAATTCCTAATGATTTTGACAAAGCAACGATTGTAGAACTTGCTGTGGTTTCTATGGAGGAACTCACAATGTTAACTCTTGCTGGATCCCCTTTATGGATTTCCACCAATGACACTGAGATTCTAAACGAAGTTGAATACCCTAGGGTTTTTCCCAAAAGTCCGAAACTCACGGGGTTAAATTCTGAATCTTCAAGAGAATCGGTTATTGTTTCCATGAATCATATTAATCTCATTGATATCCTTATGGATGTGATGTCAGCTGATTTTCAGGTTCCTTCACCACTGGTTCCTGCTCGTGAAAACTATTTCGTTAGATATTCTAAGAAGCACCAAGAAGGGATATGGGCAGTGGTTGATGTTTCCTTGGATCACCTGCAACCAAGTAGTAGTACATTGACACGAAGACGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTGTTCAAAGTGGGATGTTCTTTCCGTTGGGGGTATAATTAAAGAAATGGAACACATAACACATGGTCGTGATCTTGGAAACTATGTCTCTTTATTTCATGTCAGCAGGGCTAATTGCGACCAAAATAATATGGTGGTGCTTCAAGACAATAACATTGATAGTACATGCTCACATGTTATTTATGCTCCGGTTGATATTGGTTCTGTGAATGCAATCTTAAATGGTGGTGATCCAAATTTTGTTGCTTTGCTTCCCTCTGGTTTTGTTATTCTCCCCGATAGGGCACAATTGAGAACCACAGGACCTATGCTTAATTATGTTGAACTTGGAGGTTGTCTATTGACAATTTCATTTCAATTTTTAGTTGATCCAAGTCCAACAAGAAGAGTAGAAAATGACTCAATAGAATTTGCTGTCAAATTAGTTAAGAACACAACCAAACGGATCAAAGTAGCATTGGTCGATAGCAACACCTAA
Protein sequence

>Msa0040700

MVEDEQQTMSHQNVVDHPQSVHQQQFRDMPINITSSIGYLERCNQNQNSRNEALSSLRDQDPNHHQQRRSNFRHSQKQIQEMESFFEQCPLPNGKQRKQLSCELGLTPTQIKSWFQNKRNQIKTQQELHQNDLLRDENEKLRAENEIYKGALKDSLCPNCTDPISIGEMSSNDNQLRIENARLKVEIEMFTGKLVNDVDLVGSSSKIDQISTPAFEMGSGSDISSSMIEELYCDGNDPLGSLSIPNDFDKATIVELAVVSMEELTMLTLAGSPLWISTNDTEILNEVEYPRVFPKSPKLTGLNSESSRESVIVSMNHINLIDILMDVMSADFQVPSPLVPARENYFVRYSKKHQEGIWAVVDVSLDHLQPSSSTLTRRRPSGCLIQELPNGCSKWDVLSVGGIIKEMEHITHGRDLGNYVSLFHVSRANCDQNNMVVLQDNNIDSTCSHVIYAPVDIGSVNAILNGGDPNFVALLPSGFVILPDRAQLRTTGPMLNYVELGGCLLTISFQFLVDPSPTRRVENDSIEFAVKLVKNTTKRIKVALVDSNT*