AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041090 MtrunA17_Chr1g0206561 90.476 42 4 0 150 191 454 495 2.15e-17 79.3
Msa0041090 MtrunA17_Chr1g0206551 88.095 42 5 0 150 191 160 201 5.26e-17 77.8
Msa0041090 MtrunA17_Chr1g0206431 73.810 42 11 0 150 191 10 51 1.36e-14 68.9
Msa0041090 MtrunA17_Chr1g0206351 76.190 42 10 0 150 191 478 519 1.84e-14 70.9
Msa0041090 MtrunA17_Chr5g0426941 78.571 42 9 0 150 191 464 505 2.86e-14 70.5
Msa0041090 MtrunA17_Chr8g0361441 73.810 42 11 0 150 191 631 672 3.29e-14 70.1
Msa0041090 MtrunA17_Chr1g0154331 73.810 42 11 0 150 191 164 205 8.43e-14 68.6
Msa0041090 MtrunA17_Chr1g0154311 73.810 42 11 0 150 191 476 517 1.13e-13 68.6
Msa0041090 MtrunA17_Chr1g0206451 76.190 42 10 0 150 191 497 538 1.16e-13 68.6
Msa0041090 MtrunA17_Chr1g0206521 73.810 42 11 0 150 191 460 501 1.72e-13 68.2
Msa0041090 MtrunA17_Chr1g0206521 73.810 42 11 0 150 191 1102 1143 1.72e-13 68.2
Msa0041090 MtrunA17_Chr1g0154351 71.429 42 12 0 150 191 483 524 2.50e-13 67.8
Msa0041090 MtrunA17_Chr4g0042341 73.810 42 11 0 150 191 648 689 3.34e-13 67.4
Msa0041090 MtrunA17_Chr1g0154321 71.429 42 12 0 150 191 493 534 3.69e-13 67.0
Msa0041090 MtrunA17_Chr1g0154371 71.429 42 12 0 150 191 481 522 3.88e-13 67.0
Msa0041090 MtrunA17_Chr1g0206531 71.429 42 12 0 150 191 462 503 4.34e-13 67.0
Msa0041090 MtrunA17_Chr1g0206461 71.429 42 12 0 150 191 458 499 4.70e-13 66.6
Msa0041090 MtrunA17_Chr2g0280711 73.810 42 11 0 150 191 655 696 4.81e-13 67.0
Msa0041090 MtrunA17_Chr4g0048631 71.429 42 12 0 150 191 657 698 5.94e-13 66.6
Msa0041090 MtrunA17_Chr8g0357791 69.048 42 13 0 150 191 58 99 6.87e-13 62.0
Msa0041090 MtrunA17_Chr5g0428601 69.048 42 13 0 150 191 278 319 7.93e-13 65.9
Msa0041090 MtrunA17_Chr8g0357761 71.429 42 12 0 150 191 605 646 8.19e-13 66.2
Msa0041090 MtrunA17_Chr5g0428521 69.048 42 13 0 150 191 125 166 8.72e-13 64.7
Msa0041090 MtrunA17_Chr8g0357711 71.429 42 12 0 150 191 602 643 1.00e-12 65.9
Msa0041090 MtrunA17_Chr4g0048581 71.429 42 12 0 150 191 656 697 1.10e-12 65.9
Msa0041090 MtrunA17_Chr2g0318941 69.048 42 13 0 150 191 180 221 1.14e-12 64.7
Msa0041090 MtrunA17_Chr3g0081071 73.810 42 11 0 150 191 54 95 1.23e-12 64.3
Msa0041090 MtrunA17_Chr5g0428581 69.048 42 13 0 150 191 169 210 1.39e-12 65.1
Msa0041090 MtrunA17_Chr1g0205771 66.667 42 14 0 150 191 468 509 2.89e-12 64.7
Msa0041090 MtrunA17_Chr4g0042361 71.429 42 12 0 150 191 664 705 3.00e-12 64.7
Msa0041090 MtrunA17_Chr8g0357651 69.048 42 13 0 150 191 595 636 3.02e-12 64.3
Msa0041090 MtrunA17_Chr8g0357831 69.048 42 13 0 150 191 317 358 3.31e-12 64.3
Msa0041090 MtrunA17_Chr5g0394001 72.093 43 11 1 150 191 454 496 3.35e-12 64.3
Msa0041090 MtrunA17_Chr1g0206421 66.667 42 14 0 150 191 353 394 3.63e-12 64.3
Msa0041090 MtrunA17_Chr4g0042401 71.429 42 12 0 150 191 628 669 3.92e-12 64.3
Msa0041090 MtrunA17_Chr3g0081031 73.810 42 11 0 150 191 477 518 4.31e-12 63.9
Msa0041090 MtrunA17_Chr4g0042381 71.429 42 12 0 150 191 578 619 5.16e-12 63.9
Msa0041090 MtrunA17_Chr2g0280751 71.429 42 12 0 150 191 651 692 6.10e-12 63.5
Msa0041090 MtrunA17_Chr4g0042391 71.429 42 12 0 150 191 578 619 6.24e-12 63.5
Msa0041090 MtrunA17_Chr8g0357691 69.048 42 13 0 150 191 603 644 6.65e-12 63.5
Msa0041090 MtrunA17_Chr1g0206361 66.667 42 14 0 150 191 468 509 7.98e-12 63.2
Msa0041090 MtrunA17_Chr4g0020081 69.048 42 13 0 150 191 636 677 8.48e-12 63.2
Msa0041090 MtrunA17_Chr3g0119041 75.610 41 10 0 151 191 466 506 9.61e-12 63.2
Msa0041090 MtrunA17_Chr8g0357631 66.667 42 14 0 150 191 593 634 1.12e-11 62.8
Msa0041090 MtrunA17_Chr3g0092301 71.429 42 12 0 150 191 55 96 1.16e-11 61.6
Msa0041090 MtrunA17_Chr8g0354271 69.048 42 13 0 150 191 460 501 1.20e-11 62.8
Msa0041090 MtrunA17_Chr3g0081001 69.048 42 13 0 150 191 468 509 1.22e-11 62.8
Msa0041090 MtrunA17_Chr8g0361431 73.810 42 11 0 150 191 609 650 1.27e-11 62.8
Msa0041090 MtrunA17_Chr5g0422921 71.429 42 12 0 150 191 623 664 1.51e-11 62.4
Msa0041090 MtrunA17_Chr2g0280681 66.667 42 14 0 150 191 626 667 1.74e-11 62.4
Msa0041090 MtrunA17_Chr8g0357991 69.048 42 13 0 150 191 610 651 1.82e-11 62.4
Msa0041090 MtrunA17_Chr5g0428571 66.667 42 14 0 150 191 423 464 1.92e-11 62.0
Msa0041090 MtrunA17_Chr8g0358121 69.048 42 13 0 150 191 587 628 1.92e-11 62.0
Msa0041090 MtrunA17_Chr5g0394021 66.667 42 14 0 150 191 446 487 2.04e-11 62.0
Msa0041090 MtrunA17_Chr3g0093161 71.429 42 12 0 150 191 622 663 2.08e-11 62.0
Msa0041090 MtrunA17_Chr1g0206261 66.667 42 14 0 150 191 213 254 2.09e-11 62.0
Msa0041090 MtrunA17_Chr8g0354391 66.667 42 14 0 150 191 59 100 2.34e-11 60.8
Msa0041090 MtrunA17_Chr8g0354441 66.667 42 14 0 150 191 475 516 2.43e-11 62.0
Msa0041090 MtrunA17_Chr8g0357981 69.048 42 13 0 150 191 430 471 2.63e-11 61.6
Msa0041090 MtrunA17_Chr1g0206331 59.524 42 17 0 150 191 460 501 2.63e-11 61.6
Msa0041090 MtrunA17_Chr4g0042351 69.048 42 13 0 150 191 578 619 3.68e-11 61.2
Msa0041090 MtrunA17_Chr2g0280771 66.667 42 14 0 150 191 607 648 3.84e-11 61.2
Msa0041090 MtrunA17_Chr2g0280801 66.667 42 14 0 150 191 652 693 3.96e-11 61.2
Msa0041090 MtrunA17_Chr2g0280791 66.667 42 14 0 150 191 646 687 3.99e-11 61.2
Msa0041090 MtrunA17_Chr8g0354281 66.667 42 14 0 150 191 460 501 4.27e-11 61.2
Msa0041090 MtrunA17_Chr8g0358161 66.667 42 14 0 150 191 171 212 4.27e-11 60.8
Msa0041090 MtrunA17_Chr7g0236651 64.286 42 15 0 150 191 610 651 4.44e-11 61.2
Msa0041090 MtrunA17_Chr2g0318811 69.048 42 13 0 150 191 625 666 4.76e-11 60.8
Msa0041090 MtrunA17_Chr3g0078531 69.048 42 13 0 150 191 652 693 4.88e-11 60.8
Msa0041090 MtrunA17_Chr4g0065561 66.667 42 14 0 150 191 571 612 5.18e-11 60.8
Msa0041090 MtrunA17_Chr3g0082941 69.048 42 13 0 150 191 298 339 5.23e-11 60.8
Msa0041090 MtrunA17_Chr5g0428101 69.048 42 13 0 150 191 626 667 5.23e-11 60.8
Msa0041090 MtrunA17_Chr3g0078551 69.048 42 13 0 150 191 649 690 5.31e-11 60.8
Msa0041090 MtrunA17_Chr4g0065541 66.667 42 14 0 150 191 563 604 5.57e-11 60.8
Msa0041090 MtrunA17_Chr8g0358101 66.667 42 14 0 150 191 589 630 5.67e-11 60.8
Msa0041090 MtrunA17_Chr8g0358031 66.667 42 14 0 150 191 604 645 5.91e-11 60.8
Msa0041090 MtrunA17_Chr8g0358071 66.667 42 14 0 150 191 601 642 6.13e-11 60.8
Msa0041090 MtrunA17_Chr8g0354301 63.415 41 15 0 150 190 20 60 6.26e-11 56.2
Msa0041090 MtrunA17_Chr8g0354421 66.667 42 14 0 150 191 488 529 7.54e-11 60.5
Msa0041090 MtrunA17_Chr6g0475201 69.048 42 13 0 150 191 699 740 7.76e-11 60.5
Msa0041090 MtrunA17_Chr4g0042441 66.667 42 14 0 150 191 625 666 8.42e-11 60.5
Msa0041090 MtrunA17_Chr6g0474851 69.048 42 13 0 150 191 53 94 8.66e-11 59.3
Msa0041090 MtrunA17_Chr7g0236231 59.524 42 17 0 150 191 643 684 8.78e-11 60.1
Msa0041090 MtrunA17_Chr2g0280691 66.667 42 14 0 150 191 651 692 8.95e-11 60.1
Msa0041090 MtrunA17_Chr4g0065521 66.667 42 14 0 150 191 162 203 9.11e-11 59.7
Msa0041090 MtrunA17_Chr4g0023201 59.524 42 17 0 150 191 49 90 9.44e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041090 AT4G23180.3 73.810 42 11 0 150 191 472 513 4.48e-13 67.0
Msa0041090 AT4G23180.2 73.810 42 11 0 150 191 472 513 4.61e-13 67.0
Msa0041090 AT4G23180.1 73.810 42 11 0 150 191 472 513 5.14e-13 67.0
Msa0041090 AT4G23150.1 71.429 42 12 0 150 191 460 501 1.05e-12 66.2
Msa0041090 AT1G11280.3 73.810 42 11 0 150 191 617 658 1.13e-12 66.2
Msa0041090 AT1G11280.2 73.810 42 11 0 150 191 629 670 1.14e-12 66.2
Msa0041090 AT1G11280.1 73.810 42 11 0 150 191 639 680 1.17e-12 66.2
Msa0041090 AT4G23230.1 71.429 42 12 0 150 191 461 502 1.57e-12 65.9
Msa0041090 AT4G11530.1 69.048 42 13 0 150 191 476 517 1.78e-12 65.5
Msa0041090 AT4G23220.1 73.810 42 11 0 150 191 460 501 1.91e-12 65.5
Msa0041090 AT4G05200.1 69.048 42 13 0 150 191 471 512 2.19e-12 65.1
Msa0041090 AT4G05200.2 69.048 42 13 0 150 191 489 530 2.38e-12 65.1
Msa0041090 AT4G04500.2 66.667 42 14 0 150 191 469 510 2.51e-12 65.1
Msa0041090 AT4G04500.3 66.667 42 14 0 150 191 469 510 2.51e-12 65.1
Msa0041090 AT4G04500.1 66.667 42 14 0 150 191 469 510 2.65e-12 65.1
Msa0041090 AT4G04490.1 66.667 42 14 0 150 191 464 505 3.47e-12 64.7
Msa0041090 AT1G11280.4 73.810 42 11 0 150 191 627 668 3.52e-12 64.7
Msa0041090 AT4G23290.2 69.048 42 13 0 150 191 487 528 4.09e-12 64.3
Msa0041090 AT4G23290.1 69.048 42 13 0 150 191 444 485 4.27e-12 64.3
Msa0041090 AT4G23250.2 66.667 42 14 0 150 191 478 519 4.57e-12 64.3
Msa0041090 AT4G23140.1 69.048 42 13 0 150 191 475 516 4.65e-12 64.3
Msa0041090 AT4G23250.1 66.667 42 14 0 150 191 483 524 4.75e-12 64.3
Msa0041090 AT4G23250.3 66.667 42 14 0 150 191 478 519 4.89e-12 64.3
Msa0041090 AT4G23270.3 66.667 42 14 0 150 191 450 491 5.06e-12 64.3
Msa0041090 AT4G23140.2 69.048 42 13 0 150 191 475 516 5.07e-12 64.3
Msa0041090 AT4G23270.2 66.667 42 14 0 150 191 450 491 5.21e-12 64.3
Msa0041090 AT4G23270.1 66.667 42 14 0 150 191 450 491 5.21e-12 64.3
Msa0041090 AT4G23160.1 69.048 42 13 0 150 191 483 524 5.27e-12 64.3
Msa0041090 AT4G23280.3 64.286 42 15 0 150 191 418 459 5.30e-12 64.3
Msa0041090 AT4G23310.2 64.286 42 15 0 150 191 592 633 5.43e-12 64.3
Msa0041090 AT4G23280.2 64.286 42 15 0 150 191 466 507 5.60e-12 63.9
Msa0041090 AT4G23310.1 64.286 42 15 0 150 191 632 673 5.63e-12 64.3
Msa0041090 AT4G23280.1 64.286 42 15 0 150 191 468 509 5.66e-12 63.9
Msa0041090 AT4G23260.2 66.667 42 14 0 150 191 452 493 6.49e-12 63.9
Msa0041090 AT4G23260.1 66.667 42 14 0 150 191 463 504 6.64e-12 63.9
Msa0041090 AT1G11330.3 66.667 42 14 0 150 191 648 689 8.56e-12 63.5
Msa0041090 AT4G23190.2 66.667 42 14 0 150 191 474 515 8.57e-12 63.5
Msa0041090 AT1G11330.2 66.667 42 14 0 150 191 648 689 8.74e-12 63.5
Msa0041090 AT1G11330.1 66.667 42 14 0 150 191 646 687 8.82e-12 63.5
Msa0041090 AT1G61380.2 69.048 42 13 0 150 191 465 506 8.82e-12 63.5
Msa0041090 AT1G61380.1 69.048 42 13 0 150 191 612 653 9.18e-12 63.5
Msa0041090 AT4G23130.3 64.286 42 15 0 150 191 468 509 9.38e-12 63.5
Msa0041090 AT4G23190.3 66.667 42 14 0 150 191 396 437 9.54e-12 63.5
Msa0041090 AT4G23190.4 66.667 42 14 0 150 191 396 437 9.54e-12 63.5
Msa0041090 AT4G23130.1 64.286 42 15 0 150 191 464 505 9.61e-12 63.5
Msa0041090 AT4G23190.1 66.667 42 14 0 150 191 474 515 1.00e-11 63.2
Msa0041090 AT4G23130.2 64.286 42 15 0 150 191 468 509 1.05e-11 63.2
Msa0041090 AT4G21380.1 69.048 42 13 0 150 191 650 691 2.69e-11 62.0
Msa0041090 AT3G45860.1 66.667 42 14 0 150 191 475 516 2.83e-11 62.0
Msa0041090 AT4G11480.2 66.667 42 14 0 150 191 448 489 2.83e-11 62.0
Msa0041090 AT4G11480.4 66.667 42 14 0 150 191 445 486 3.00e-11 62.0
Msa0041090 AT4G11490.1 61.905 42 16 0 150 191 445 486 3.04e-11 62.0
Msa0041090 AT4G11480.3 66.667 42 14 0 150 191 448 489 3.09e-11 62.0
Msa0041090 AT4G11480.1 66.667 42 14 0 150 191 453 494 3.09e-11 62.0
Msa0041090 AT4G04510.1 66.667 42 14 0 150 191 463 504 3.66e-11 61.6
Msa0041090 AT4G04510.2 66.667 42 14 0 150 191 465 506 3.66e-11 61.6
Msa0041090 AT1G61370.2 64.286 42 15 0 150 191 474 515 5.32e-11 61.2
Msa0041090 AT4G23300.1 66.667 42 14 0 150 191 477 518 5.68e-11 61.2
Msa0041090 AT1G61370.1 64.286 42 15 0 150 191 625 666 5.86e-11 61.2
Msa0041090 AT4G21390.1 64.286 42 15 0 150 191 653 694 6.87e-11 60.8
Msa0041090 AT4G21390.2 64.286 42 15 0 150 191 653 694 7.42e-11 60.8
Msa0041090 AT1G61360.1 69.048 42 13 0 150 191 622 663 7.59e-11 60.8
Msa0041090 AT1G61360.2 69.048 42 13 0 150 191 541 582 7.88e-11 60.8
Msa0041090 AT1G61360.3 69.048 42 13 0 150 191 541 582 7.88e-11 60.8
Msa0041090 AT1G61360.4 69.048 42 13 0 150 191 541 582 7.88e-11 60.8
Msa0041090 AT1G61440.1 69.048 42 13 0 150 191 602 643 8.37e-11 60.8
Msa0041090 AT1G61440.3 69.048 42 13 0 150 191 607 648 8.38e-11 60.8
Msa0041090 AT1G11280.5 70.732 41 12 0 150 190 629 669 8.58e-11 60.5
Msa0041090 AT1G61440.2 69.048 42 13 0 150 191 632 673 8.75e-11 60.5

Find 33 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTAAGATATCCGATTT+TGG 0.188529 1_1:+71354153 Msa0041090:CDS
ATCCTCATATGATCCATTAT+TGG 0.214793 1_1:-71353457 None:intergenic
AAACTTGGACAAGGTGGATT+TGG 0.269150 1_1:+71353584 Msa0041090:CDS
AAGGATGTTGATGATGATTC+TGG 0.320479 1_1:+71350960 Msa0041090:intron
AATCCAAAATCGGATATCTT+AGG 0.323871 1_1:-71354156 None:intergenic
GTGGATTTGGAGTTGTTTAT+CGG 0.379579 1_1:+71353597 Msa0041090:CDS
AAGAAGAAATACTGGACAAA+AGG 0.393533 1_1:-71353171 None:intergenic
TTATTGTGTGAAGCCAATAA+TGG 0.395708 1_1:+71353444 Msa0041090:intron
TGAAGGAGAGGTGGAGAAGA+AGG 0.412390 1_1:+71351052 Msa0041090:CDS
GTTGTTGTCGTAGGTGCTAT+TGG 0.414136 1_1:-71353140 None:intergenic
TTGTCCAAGTTTATTAGAAT+CGG 0.420170 1_1:-71353573 None:intergenic
CAATCTCGCCAATCCAAAAT+CGG 0.423738 1_1:-71354166 None:intergenic
ACTTATTATTTGTTTGATGA+AGG 0.427405 1_1:+71351035 Msa0041090:CDS
TTCTCCGATTCTAATAAACT+TGG 0.472453 1_1:+71353569 Msa0041090:CDS
GTCACTTGTAGCAACTCATA+TGG 0.485778 1_1:-71353546 None:intergenic
TGGATTTGGAGTTGTTTATC+GGG 0.489731 1_1:+71353598 Msa0041090:CDS
GAGAGGTGGAGAAGAAGGTG+AGG 0.495216 1_1:+71351057 Msa0041090:CDS
AGAAGAAATACTGGACAAAA+GGG 0.500354 1_1:-71353170 None:intergenic
TTTGTTATTGATCAAAGTGA+AGG 0.503851 1_1:+71354189 Msa0041090:CDS
TTTGTTTGATGAAGGAGAGG+TGG 0.538181 1_1:+71351043 Msa0041090:CDS
AGAGGTGGAGAAGAAGGTGA+GGG 0.564994 1_1:+71351058 Msa0041090:CDS
AGCCAATAATGGATCATATG+AGG 0.568859 1_1:+71353455 Msa0041090:intron
TCTAATAAACTTGGACAAGG+TGG 0.570846 1_1:+71353578 Msa0041090:CDS
GTTATCACAGAATGCATCAT+CGG 0.583580 1_1:-71353098 None:intergenic
AATAATGGATCATATGAGGA+TGG 0.586270 1_1:+71353459 Msa0041090:CDS
TTATTTGTTTGATGAAGGAG+AGG 0.593027 1_1:+71351040 Msa0041090:CDS
GGATCATATGAGGATGGAGA+CGG 0.632608 1_1:+71353465 Msa0041090:CDS
ATCATAAAAGGTATCGTCCG+AGG 0.638247 1_1:+71354046 Msa0041090:intron
AGATCACGTGTATAATGCGG+AGG 0.643642 1_1:-71354096 None:intergenic
CGTGAAGATATATAAGACCT+CGG 0.666544 1_1:-71354063 None:intergenic
TTGAGATCACGTGTATAATG+CGG 0.677937 1_1:-71354099 None:intergenic
GATTCTAATAAACTTGGACA+AGG 0.678908 1_1:+71353575 Msa0041090:CDS
AGGTCTTATATATCTTCACG+AGG 0.695341 1_1:+71354066 Msa0041090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTTATTTTTTACATT+TGG + chr1_1:71350919-71350938 Msa0041090:intron 10.0%
!!! ATAATAATTAAAAGTACTAT+TGG + chr1_1:71351587-71351606 Msa0041090:intron 10.0%
!!! TATTTTTTACATTTGGATTT+TGG + chr1_1:71350926-71350945 Msa0041090:intron 15.0%
!!! ACTTTTGAAATTTGAATTTA+CGG + chr1_1:71351188-71351207 Msa0041090:intron 15.0%
!!! ATATGATACTTTTACTAAAA+GGG + chr1_1:71351296-71351315 Msa0041090:intron 15.0%
!!! CAAATGTAGAAATTTAATTT+TGG + chr1_1:71351358-71351377 Msa0041090:intron 15.0%
!! TTCAATTGTTTATTATCATT+TGG - chr1_1:71351757-71351776 None:intergenic 15.0%
!! ATATCAAAATGAAGAATAAA+GGG - chr1_1:71352998-71353017 None:intergenic 15.0%
!! AATATCAAAATGAAGAATAA+AGG - chr1_1:71352999-71353018 None:intergenic 15.0%
!!! ATTTTAAAGCAAACTATTTT+TGG - chr1_1:71353305-71353324 None:intergenic 15.0%
!!! TAATTTAAAGTAAAACTAGA+TGG - chr1_1:71353358-71353377 None:intergenic 15.0%
!! ACTTAAAATTGATAAATTTC+AGG + chr1_1:71353682-71353701 Msa0041090:intron 15.0%
!! CTTAAAATTGATAAATTTCA+GGG + chr1_1:71353683-71353702 Msa0041090:intron 15.0%
!!! TATGAATTTCAAAATTGTTT+TGG - chr1_1:71353961-71353980 None:intergenic 15.0%
!!! TTTTGAAATTCATATGATAT+TGG + chr1_1:71353967-71353986 Msa0041090:intron 15.0%
!! ACTTATTATTTGTTTGATGA+AGG + chr1_1:71351035-71351054 Msa0041090:CDS 20.0%
!! TCATTATTTCATTCCTTAAT+CGG - chr1_1:71351267-71351286 None:intergenic 20.0%
!!! TAGTAAAAGTATCATATCTT+TGG - chr1_1:71351293-71351312 None:intergenic 20.0%
!!! GATATGATACTTTTACTAAA+AGG + chr1_1:71351295-71351314 Msa0041090:intron 20.0%
!! ACAAGTTAAGAATCTAAAAA+AGG - chr1_1:71351452-71351471 None:intergenic 20.0%
!! TAAAGTACAAAATGATACTT+TGG + chr1_1:71351550-71351569 Msa0041090:intron 20.0%
!! TGATAATAAACAATTGAATG+TGG + chr1_1:71351759-71351778 Msa0041090:intron 20.0%
!! ACTCAAAACGTATAAAAATA+TGG + chr1_1:71352094-71352113 Msa0041090:intron 20.0%
!!! AAAGATTTTCTTTTTTGCAA+TGG + chr1_1:71353021-71353040 Msa0041090:intron 20.0%
!! ACAAAAAGATAACAAAGAAA+GGG - chr1_1:71353055-71353074 None:intergenic 20.0%
! AAAAAAAAACAACCCAAGAA+AGG - chr1_1:71350892-71350911 None:intergenic 25.0%
!!! GATTTTGGAGTTTTGTTTTA+AGG + chr1_1:71350941-71350960 Msa0041090:intron 25.0%
! TCAAATTTCAAAAGTCAGAT+AGG - chr1_1:71351183-71351202 None:intergenic 25.0%
!!! GACACTCATTTTAAAATAGA+GGG - chr1_1:71351226-71351245 None:intergenic 25.0%
!!! TAGCAAGACTATTTTAGTAA+GGG - chr1_1:71351500-71351519 None:intergenic 25.0%
!! AAAATAGTCTTGCTAGTTAT+TGG + chr1_1:71351505-71351524 Msa0041090:intron 25.0%
! TAATAAACAATTGAATGTGG+TGG + chr1_1:71351762-71351781 Msa0041090:intron 25.0%
! AATAAACAATTGAATGTGGT+GGG + chr1_1:71351763-71351782 Msa0041090:intron 25.0%
!!! AATGAAAAGTTTTTTCCCAT+GGG - chr1_1:71351900-71351919 None:intergenic 25.0%
! AAACGTATAAAAATATGGTG+TGG + chr1_1:71352099-71352118 Msa0041090:intron 25.0%
! AACGTATAAAAATATGGTGT+GGG + chr1_1:71352100-71352119 Msa0041090:intron 25.0%
! TGTGGTAAAAAAAGATTCAA+TGG + chr1_1:71352241-71352260 Msa0041090:intron 25.0%
!! CATATCAATTTTATAAGAGC+TGG + chr1_1:71352566-71352585 Msa0041090:intron 25.0%
! ATCATGATGATTTCAAAACA+TGG + chr1_1:71352594-71352613 Msa0041090:intron 25.0%
! TGTGGTAAAAAATGATTCAA+TGG - chr1_1:71352914-71352933 None:intergenic 25.0%
! GACAAAAAGATAACAAAGAA+AGG - chr1_1:71353056-71353075 None:intergenic 25.0%
! TCAATCTTAAGAAGAAATAC+TGG - chr1_1:71353182-71353201 None:intergenic 25.0%
!!! ATCTTAAACTCGTTAGTTTT+AGG - chr1_1:71353266-71353285 None:intergenic 25.0%
! TTGTCCAAGTTTATTAGAAT+CGG - chr1_1:71353576-71353595 None:intergenic 25.0%
! AGTCTTGATTACTTCATATT+TGG + chr1_1:71353893-71353912 Msa0041090:intron 25.0%
!!! TTTGTTATTGATCAAAGTGA+AGG + chr1_1:71354189-71354208 Msa0041090:CDS 25.0%
! TTGAATCAGGATTTAGAGTT+GGG + chr1_1:71350834-71350853 Msa0041090:intron 30.0%
TTATTTGTTTGATGAAGGAG+AGG + chr1_1:71351040-71351059 Msa0041090:CDS 30.0%
!!! CGACACTCATTTTAAAATAG+AGG - chr1_1:71351227-71351246 None:intergenic 30.0%
!!! CTAGCAAGACTATTTTAGTA+AGG - chr1_1:71351501-71351520 None:intergenic 30.0%
!! AAGCGACACTCATTTTAAAA+CGG + chr1_1:71351678-71351697 Msa0041090:intron 30.0%
ATAAACAATTGAATGTGGTG+GGG + chr1_1:71351764-71351783 Msa0041090:intron 30.0%
! CAATGGTTCAGATTTTAGAT+AGG - chr1_1:71351837-71351856 None:intergenic 30.0%
!!! GAATGAAAAGTTTTTTCCCA+TGG - chr1_1:71351901-71351920 None:intergenic 30.0%
! CTTTTCATTCCCATTTTGAA+CGG + chr1_1:71351911-71351930 Msa0041090:intron 30.0%
TGGAGGATACTATATGTAAA+GGG - chr1_1:71352157-71352176 None:intergenic 30.0%
TTGGAGGATACTATATGTAA+AGG - chr1_1:71352158-71352177 None:intergenic 30.0%
TAAATGGAGCATGTGATAAA+TGG - chr1_1:71352193-71352212 None:intergenic 30.0%
ATGCTCCATTTATACCATTT+AGG + chr1_1:71352201-71352220 Msa0041090:intron 30.0%
TGCTCCATTTATACCATTTA+GGG + chr1_1:71352202-71352221 Msa0041090:intron 30.0%
AAGACCCTAAATGGTATAAA+TGG - chr1_1:71352209-71352228 None:intergenic 30.0%
! ATTTATACCATTTAGGGTCT+TGG + chr1_1:71352208-71352227 Msa0041090:intron 30.0%
TCTTATTCCATGAATGTTCA+AGG - chr1_1:71352674-71352693 None:intergenic 30.0%
TACGATAGAAGAAGATAAAG+AGG + chr1_1:71352815-71352834 Msa0041090:intron 30.0%
CAAAATGAAGAATAAAGGGA+TGG - chr1_1:71352994-71353013 None:intergenic 30.0%
AGAAGAAATACTGGACAAAA+GGG - chr1_1:71353173-71353192 None:intergenic 30.0%
AAGAAGAAATACTGGACAAA+AGG - chr1_1:71353174-71353193 None:intergenic 30.0%
!!! AGTTTTAGGCTAATGTTAGA+TGG - chr1_1:71353252-71353271 None:intergenic 30.0%
TTATTGTGTGAAGCCAATAA+TGG + chr1_1:71353444-71353463 Msa0041090:intron 30.0%
ATCCTCATATGATCCATTAT+TGG - chr1_1:71353460-71353479 None:intergenic 30.0%
!! AATAATGGATCATATGAGGA+TGG + chr1_1:71353459-71353478 Msa0041090:CDS 30.0%
TTCTCCGATTCTAATAAACT+TGG + chr1_1:71353569-71353588 Msa0041090:CDS 30.0%
GATTCTAATAAACTTGGACA+AGG + chr1_1:71353575-71353594 Msa0041090:CDS 30.0%
TAAGTTTCGATGTTGAAGTT+TGG - chr1_1:71353804-71353823 None:intergenic 30.0%
TACTTGGTTTCAGTTTAGAA+GGG + chr1_1:71353831-71353850 Msa0041090:intron 30.0%
AAGCGCTATGATATCATAAA+AGG + chr1_1:71354034-71354053 Msa0041090:intron 30.0%
! AATCCTAAGATATCCGATTT+TGG + chr1_1:71354153-71354172 Msa0041090:CDS 30.0%
AATCCAAAATCGGATATCTT+AGG - chr1_1:71354159-71354178 None:intergenic 30.0%
! TAAGATATCCGATTTTGGAT+TGG + chr1_1:71354158-71354177 Msa0041090:CDS 30.0%
!! GGTTAAAGTGTTGTTGAATC+AGG + chr1_1:71350821-71350840 Msa0041090:intron 35.0%
! GTTGAATCAGGATTTAGAGT+TGG + chr1_1:71350833-71350852 Msa0041090:intron 35.0%
! TGAATCAGGATTTAGAGTTG+GGG + chr1_1:71350835-71350854 Msa0041090:intron 35.0%
AGATTCGAGTCATTCAAAGT+TGG + chr1_1:71350864-71350883 Msa0041090:intron 35.0%
TTCAAAGTTGGATCCTTTCT+TGG + chr1_1:71350876-71350895 Msa0041090:intron 35.0%
TCAAAGTTGGATCCTTTCTT+GGG + chr1_1:71350877-71350896 Msa0041090:intron 35.0%
!! AAGGATGTTGATGATGATTC+TGG + chr1_1:71350960-71350979 Msa0041090:intron 35.0%
GAGAGTTAGTGTTTGATGAA+GGG + chr1_1:71351080-71351099 Msa0041090:intron 35.0%
AGAGTTAGTGTTTGATGAAG+GGG + chr1_1:71351081-71351100 Msa0041090:intron 35.0%
CTTCTAAACTTGTGCCTTAA+GGG - chr1_1:71351337-71351356 None:intergenic 35.0%
ACTTCTAAACTTGTGCCTTA+AGG - chr1_1:71351338-71351357 None:intergenic 35.0%
! ATGATACTTTGGAAGTTGTG+TGG + chr1_1:71351561-71351580 Msa0041090:intron 35.0%
!!! GACACTCATTTTAAAACGGA+GGG + chr1_1:71351682-71351701 Msa0041090:intron 35.0%
!! TGACTTTTTGGCAATTCACA+TGG - chr1_1:71351803-71351822 None:intergenic 35.0%
ACCTTTACATGAGCAATGAT+AGG + chr1_1:71351962-71351981 Msa0041090:intron 35.0%
ACCTATCATTGCTCATGTAA+AGG - chr1_1:71351966-71351985 None:intergenic 35.0%
! ATTGCTTGGTGGGATATATA+CGG - chr1_1:71352020-71352039 None:intergenic 35.0%
ACATATAGTATCCTCCAATC+CGG + chr1_1:71352160-71352179 Msa0041090:intron 35.0%
AGTAACAGTAACGTTCACTT+GGG - chr1_1:71352346-71352365 None:intergenic 35.0%
GTCATTCATCTCTCAATAAC+AGG + chr1_1:71352454-71352473 Msa0041090:intron 35.0%
TCTTATGCCTTGAACATTCA+TGG + chr1_1:71352664-71352683 Msa0041090:intron 35.0%
ATGGAATAAGAGACTGACAA+GGG + chr1_1:71352683-71352702 Msa0041090:intron 35.0%
! ATTTACACCATTTAGGGTCT+TGG - chr1_1:71352947-71352966 None:intergenic 35.0%
AAGACCCTAAATGGTGTAAA+TGG + chr1_1:71352946-71352965 Msa0041090:intron 35.0%
TGCTCCATTTACACCATTTA+GGG - chr1_1:71352953-71352972 None:intergenic 35.0%
ATGCTCCATTTACACCATTT+AGG - chr1_1:71352954-71352973 None:intergenic 35.0%
TGAAGAATAAAGGGATGGAT+TGG - chr1_1:71352989-71353008 None:intergenic 35.0%
GTTATCACAGAATGCATCAT+CGG - chr1_1:71353101-71353120 None:intergenic 35.0%
! TACTGGACAAAAGGGTTTTA+AGG - chr1_1:71353165-71353184 None:intergenic 35.0%
AAGCGAAAGCAATTCTCTAA+AGG + chr1_1:71353204-71353223 Msa0041090:intron 35.0%
!! AAAAGCTGACTTGTTCATCT+TGG + chr1_1:71353421-71353440 Msa0041090:intron 35.0%
!! AGCCAATAATGGATCATATG+AGG + chr1_1:71353455-71353474 Msa0041090:intron 35.0%
TCTAATAAACTTGGACAAGG+TGG + chr1_1:71353578-71353597 Msa0041090:CDS 35.0%
! GTGGATTTGGAGTTGTTTAT+CGG + chr1_1:71353597-71353616 Msa0041090:CDS 35.0%
! TGGATTTGGAGTTGTTTATC+GGG + chr1_1:71353598-71353617 Msa0041090:CDS 35.0%
TCGCAATCATTTGTCCATTA+GGG - chr1_1:71353715-71353734 None:intergenic 35.0%
ATCGCAATCATTTGTCCATT+AGG - chr1_1:71353716-71353735 None:intergenic 35.0%
TTGTCCAAAGATTCTGATCA+AGG + chr1_1:71353743-71353762 Msa0041090:intron 35.0%
ATCTCCTTGATCAGAATCTT+TGG - chr1_1:71353750-71353769 None:intergenic 35.0%
CGAAACTTAGTTAGACTACT+TGG + chr1_1:71353815-71353834 Msa0041090:intron 35.0%
CTACTTGGTTTCAGTTTAGA+AGG + chr1_1:71353830-71353849 Msa0041090:intron 35.0%
CGTGAAGATATATAAGACCT+CGG - chr1_1:71354066-71354085 None:intergenic 35.0%
! AGGTCTTATATATCTTCACG+AGG + chr1_1:71354066-71354085 Msa0041090:CDS 35.0%
TTGAGATCACGTGTATAATG+CGG - chr1_1:71354102-71354121 None:intergenic 35.0%
TTTGTTTGATGAAGGAGAGG+TGG + chr1_1:71351043-71351062 Msa0041090:CDS 40.0%
GGAGAGTTAGTGTTTGATGA+AGG + chr1_1:71351079-71351098 Msa0041090:intron 40.0%
TTCCTTAATCGGTGTGCAAT+TGG - chr1_1:71351256-71351275 None:intergenic 40.0%
! AATGCTAACTTGTGCCCTTA+AGG + chr1_1:71351320-71351339 Msa0041090:intron 40.0%
!! ATTCTTAACTTGTGCCCTGA+GGG + chr1_1:71351459-71351478 Msa0041090:intron 40.0%
!!! CGACACTCATTTTAAAACGG+AGG + chr1_1:71351681-71351700 Msa0041090:intron 40.0%
ATTGCCAAAAAGTCACAAGC+AGG + chr1_1:71351808-71351827 Msa0041090:intron 40.0%
! GATACCTGCTTGTGACTTTT+TGG - chr1_1:71351815-71351834 None:intergenic 40.0%
CTGAAAAGCAACTTTCCCAT+GGG + chr1_1:71351882-71351901 Msa0041090:intron 40.0%
! GAGGTGTTCATTAGACTCTA+GGG - chr1_1:71351942-71351961 None:intergenic 40.0%
! TGAGGTGTTCATTAGACTCT+AGG - chr1_1:71351943-71351962 None:intergenic 40.0%
TCATTGCTCATGTAAAGGTG+AGG - chr1_1:71351961-71351980 None:intergenic 40.0%
GGATATATACGGTGTAAGGA+AGG - chr1_1:71352009-71352028 None:intergenic 40.0%
! TATGGTGTGGGACAACTTTT+TGG + chr1_1:71352112-71352131 Msa0041090:intron 40.0%
CATATAGTATCCTCCAATCC+GGG + chr1_1:71352161-71352180 Msa0041090:intron 40.0%
TGTGATAAATGGAGCATACC+CGG - chr1_1:71352182-71352201 None:intergenic 40.0%
CATTCATCCAAGACCCTAAA+TGG - chr1_1:71352937-71352956 None:intergenic 40.0%
GAGTAACAGTAACGTTCACT+TGG - chr1_1:71352347-71352366 None:intergenic 40.0%
! GATTGTCTGGTTTGAAACGA+CGG - chr1_1:71352517-71352536 None:intergenic 40.0%
ACCTTAGATTTCGCAAACCA+TGG - chr1_1:71352541-71352560 None:intergenic 40.0%
CATGGAATAAGAGACTGACA+AGG + chr1_1:71352682-71352701 Msa0041090:intron 40.0%
GCAGAATAAGAGATGACGTA+AGG + chr1_1:71352714-71352733 Msa0041090:intron 40.0%
ATAAGAGATGACGTAAGGCA+TGG + chr1_1:71352719-71352738 Msa0041090:intron 40.0%
CATTCATCCAAGACCCTAAA+TGG + chr1_1:71352937-71352956 Msa0041090:intron 40.0%
!! AATAAAGGGATGGATTGGAG+GGG - chr1_1:71352984-71353003 None:intergenic 40.0%
!! GAATAAAGGGATGGATTGGA+GGG - chr1_1:71352985-71353004 None:intergenic 40.0%
!! AGAATAAAGGGATGGATTGG+AGG - chr1_1:71352986-71353005 None:intergenic 40.0%
!!! GGTTTTAAGGTTGTTGTCGT+AGG - chr1_1:71353152-71353171 None:intergenic 40.0%
GTCACTTGTAGCAACTCATA+TGG - chr1_1:71353549-71353568 None:intergenic 40.0%
! AAACTTGGACAAGGTGGATT+TGG + chr1_1:71353584-71353603 Msa0041090:CDS 40.0%
TTTCAGGGTAAACTCCCTAA+TGG + chr1_1:71353698-71353717 Msa0041090:intron 40.0%
! TAGAAGCGCGCAATTGAATT+GGG + chr1_1:71354009-71354028 Msa0041090:intron 40.0%
!! ATCATAAAAGGTATCGTCCG+AGG + chr1_1:71354046-71354065 Msa0041090:intron 40.0%
CAATCTCGCCAATCCAAAAT+CGG - chr1_1:71354169-71354188 None:intergenic 40.0%
! AGCCAATTGCACACCGATTA+AGG + chr1_1:71351251-71351270 Msa0041090:intron 45.0%
!! GATTCTTAACTTGTGCCCTG+AGG + chr1_1:71351458-71351477 Msa0041090:intron 45.0%
!! CATGTTAACTTGTGCCCTCA+GGG - chr1_1:71351476-71351495 None:intergenic 45.0%
!! TCATGTTAACTTGTGCCCTC+AGG - chr1_1:71351477-71351496 None:intergenic 45.0%
GCTGAAAAGCAACTTTCCCA+TGG + chr1_1:71351881-71351900 Msa0041090:intron 45.0%
GGTGGGATATATACGGTGTA+AGG - chr1_1:71352013-71352032 None:intergenic 45.0%
CATGCTTGGAATTGCTTGGT+GGG - chr1_1:71352030-71352049 None:intergenic 45.0%
CAAGCAATTCCAAGCATGCA+CGG + chr1_1:71352032-71352051 Msa0041090:intron 45.0%
TCTTGAAATCCGTGCATGCT+TGG - chr1_1:71352044-71352063 None:intergenic 45.0%
AGCATGCACGGATTTCAAGA+TGG + chr1_1:71352044-71352063 Msa0041090:intron 45.0%
GCACGGATTTCAAGATGGAA+AGG + chr1_1:71352049-71352068 Msa0041090:intron 45.0%
TAAATGGAGCATACCCGGAT+TGG - chr1_1:71352177-71352196 None:intergenic 45.0%
GGTCTTGGATGAATGACATG+TGG + chr1_1:71352223-71352242 Msa0041090:intron 45.0%
TAACGTTCACTTGGGAGAGA+GGG - chr1_1:71352338-71352357 None:intergenic 45.0%
GTGAGAGGAAGAGTTTCTGA+CGG - chr1_1:71352380-71352399 None:intergenic 45.0%
ACGACGACGATTGAGATGAA+CGG - chr1_1:71352436-71352455 None:intergenic 45.0%
ACAACAGCGGATGAGATGAA+CGG - chr1_1:71352487-71352506 None:intergenic 45.0%
TTCAAACCAGACAATCGCCA+TGG + chr1_1:71352521-71352540 Msa0041090:intron 45.0%
! GCCATGGTTTGCGAAATCTA+AGG + chr1_1:71352537-71352556 Msa0041090:intron 45.0%
CATGGCTTCATCTTCCTCAA+TGG - chr1_1:71352780-71352799 None:intergenic 45.0%
TTGAGGAAGATGAAGCCATG+AGG + chr1_1:71352780-71352799 Msa0041090:intron 45.0%
TGAAGCCATGAGGTGAATAG+TGG + chr1_1:71352790-71352809 Msa0041090:intron 45.0%
GAAGCCATGAGGTGAATAGT+GGG + chr1_1:71352791-71352810 Msa0041090:intron 45.0%
GTAACCCACTATTCACCTCA+TGG - chr1_1:71352798-71352817 None:intergenic 45.0%
GGTCTTGGATGAATGACATG+TGG - chr1_1:71352223-71352242 None:intergenic 45.0%
TGGTGTAAATGGAGCATACC+TGG + chr1_1:71352957-71352976 Msa0041090:intron 45.0%
!!! TGCATCATCGGCTTTTGCAT+GGG - chr1_1:71353089-71353108 None:intergenic 45.0%
!!! ATGCATCATCGGCTTTTGCA+TGG - chr1_1:71353090-71353109 None:intergenic 45.0%
! GTTGTTGTCGTAGGTGCTAT+TGG - chr1_1:71353143-71353162 None:intergenic 45.0%
GGATCATATGAGGATGGAGA+CGG + chr1_1:71353465-71353484 Msa0041090:CDS 45.0%
TTCAATTGCGCGCTTCTAGT+TGG - chr1_1:71354007-71354026 None:intergenic 45.0%
! CTAGAAGCGCGCAATTGAAT+TGG + chr1_1:71354008-71354027 Msa0041090:intron 45.0%
AGATCACGTGTATAATGCGG+AGG - chr1_1:71354099-71354118 None:intergenic 45.0%
!!! ATATTATTTTTATAATTCAA+TGG - chr1_1:71351854-71351873 None:intergenic 5.0%
!! TTATAAAAATAATATATCTA+TGG + chr1_1:71351859-71351878 Msa0041090:intron 5.0%
TGAAGGAGAGGTGGAGAAGA+AGG + chr1_1:71351052-71351071 Msa0041090:CDS 50.0%
AGAGGTGGAGAAGAAGGTGA+GGG + chr1_1:71351058-71351077 Msa0041090:CDS 50.0%
! AGGGCAGTGCCGTTCAAAAT+GGG - chr1_1:71351923-71351942 None:intergenic 50.0%
! TAGGGCAGTGCCGTTCAAAA+TGG - chr1_1:71351924-71351943 None:intergenic 50.0%
GCATGCTTGGAATTGCTTGG+TGG - chr1_1:71352031-71352050 None:intergenic 50.0%
CGTGCATGCTTGGAATTGCT+TGG - chr1_1:71352034-71352053 None:intergenic 50.0%
GTAACGTTCACTTGGGAGAG+AGG - chr1_1:71352339-71352358 None:intergenic 50.0%
ACGACGATTGAGATGAACGG+CGG - chr1_1:71352433-71352452 None:intergenic 50.0%
! TGTCTGGTTTGAAACGACGG+CGG - chr1_1:71352514-71352533 None:intergenic 50.0%
GAGACTGACAAGGGTAAGAG+TGG + chr1_1:71352692-71352711 Msa0041090:intron 50.0%
GATGACGTAAGGCATGGCAA+CGG + chr1_1:71352725-71352744 Msa0041090:intron 50.0%
GAGAGGTGGAGAAGAAGGTG+AGG + chr1_1:71351057-71351076 Msa0041090:CDS 55.0%
! ATGGAGCATACCCGGATTGG+AGG - chr1_1:71352174-71352193 None:intergenic 55.0%
TTCACTTGGGAGAGAGGGAG+AGG - chr1_1:71352333-71352352 None:intergenic 55.0%
GCACAATCGGCTGATGTTGG+CGG - chr1_1:71352411-71352430 None:intergenic 55.0%
GAGATGAACGGCGGCACAAT+CGG - chr1_1:71352424-71352443 None:intergenic 55.0%
CGCAAACCATGGCGATTGTC+TGG - chr1_1:71352530-71352549 None:intergenic 55.0%
TTGGCGGCGATGAGAGTGAG+AGG - chr1_1:71352395-71352414 None:intergenic 60.0%
GCGGCACAATCGGCTGATGT+TGG - chr1_1:71352414-71352433 None:intergenic 60.0%
! CTGGTTTGAAACGACGGCGG+CGG - chr1_1:71352511-71352530 None:intergenic 60.0%
GTAAGGCATGGCAACGGCGA+CGG + chr1_1:71352731-71352750 Msa0041090:intron 60.0%
TGGCGGTGGGGATACCATTG+AGG + chr1_1:71352763-71352782 Msa0041090:intron 60.0%
!! GGGATGGATTGGAGGGGTCC+AGG - chr1_1:71352978-71352997 None:intergenic 65.0%
CGACGGCGGCGGTACAACAG+CGG - chr1_1:71352500-71352519 None:intergenic 70.0%
ATGGCAACGGCGACGGCAGG+AGG + chr1_1:71352738-71352757 Msa0041090:intron 70.0%
AACGGCGACGGCAGGAGGCA+TGG + chr1_1:71352743-71352762 Msa0041090:intron 70.0%
! ACGGCAGGAGGCATGGCGGT+GGG + chr1_1:71352750-71352769 Msa0041090:intron 70.0%
GGCATGGCAACGGCGACGGC+AGG + chr1_1:71352735-71352754 Msa0041090:intron 75.0%
! GGCGACGGCAGGAGGCATGG+CGG + chr1_1:71352746-71352765 Msa0041090:intron 75.0%
! GACGGCAGGAGGCATGGCGG+TGG + chr1_1:71352749-71352768 Msa0041090:intron 75.0%
! CGGCAGGAGGCATGGCGGTG+GGG + chr1_1:71352751-71352770 Msa0041090:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71350803 71354239 71350803 ID=Msa0041090;Name=Msa0041090
chr1_1 mRNA 71350803 71354239 71350803 ID=Msa0041090-mRNA-1;Parent=Msa0041090;Name=Msa0041090-mRNA-1;_AED=0.60;_eAED=0.77;_QI=0|0|0|0.6|1|1|5|0|191
chr1_1 exon 71350803 71350808 71350803 ID=Msa0041090-mRNA-1:exon:23652;Parent=Msa0041090-mRNA-1
chr1_1 exon 71350963 71351083 71350963 ID=Msa0041090-mRNA-1:exon:23653;Parent=Msa0041090-mRNA-1
chr1_1 exon 71353080 71353181 71353080 ID=Msa0041090-mRNA-1:exon:23654;Parent=Msa0041090-mRNA-1
chr1_1 exon 71353457 71353619 71353457 ID=Msa0041090-mRNA-1:exon:23655;Parent=Msa0041090-mRNA-1
chr1_1 exon 71354056 71354239 71354056 ID=Msa0041090-mRNA-1:exon:23656;Parent=Msa0041090-mRNA-1
chr1_1 CDS 71350803 71350808 71350803 ID=Msa0041090-mRNA-1:cds;Parent=Msa0041090-mRNA-1
chr1_1 CDS 71350963 71351083 71350963 ID=Msa0041090-mRNA-1:cds;Parent=Msa0041090-mRNA-1
chr1_1 CDS 71353080 71353181 71353080 ID=Msa0041090-mRNA-1:cds;Parent=Msa0041090-mRNA-1
chr1_1 CDS 71353457 71353619 71353457 ID=Msa0041090-mRNA-1:cds;Parent=Msa0041090-mRNA-1
chr1_1 CDS 71354056 71354239 71354056 ID=Msa0041090-mRNA-1:cds;Parent=Msa0041090-mRNA-1
Gene Sequence

>Msa0041090

ATGATAGATGTTGATGATGATTCTGGAGTATTCATAATATTTCAACATTCTTTGTTTGATTTTCAGCAAAAGAGAAATACTTATTATTTGTTTGATGAAGGAGAGGTGGAGAAGAAGGTGAGGGAGATTGTATCCCATGCAAAAGCCGATGATGCATTCTGTGATAACAACATAAGTAACTACACATCCAATAGCACCTACGACAACAACCTTAAAACCCTTTTGTCCACCAATAATGGATCATATGAGGATGGAGACGGATATGAAGATGAAGATGAGATTTTACTATTGTTGAGTCTTTGCAATTTAACTTTGATACCATATGAGTTGCTACAAGTGACTTCTCCGATTCTAATAAACTTGGACAAGGTGGATTTGGAGTTGTTTATCGGGTATCGTCCGAGGTCTTATATATCTTCACGAGGATTCTCGCCTCCGCATTATACACGTGATCTCAAAGCTAGCAATATTCTCTTAGACGACAAGATGAATCCTAAGATATCCGATTTTGGATTGGCGAGATTGTTTGTTATTGATCAAAGTGAAGGAAATACAAGTAAAATTGTTGAAACCTAG
Protein sequence

>Msa0041090

MIDVDDDSGVFIIFQHSLFDFQQKRNTYYLFDEGEVEKKVREIVSHAKADDAFCDNNISNYTSNSTYDNNLKTLLSTNNGSYEDGDGYEDEDEILLLLSLCNLTLIPYELLQVTSPILINLDKVDLELFIGYRPRSYISSRGFSPPHYTRDLKASNILLDDKMNPKISDFGLARLFVIDQSEGNTSKIVET*