AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041320 MtrunA17_Chr2g0333981 75.294 170 42 0 1 170 1 170 2.07e-92 266
Msa0041320 MtrunA17_Chr8g0379021 69.364 173 53 0 1 173 1 173 4.06e-86 250
Msa0041320 MtrunA17_Chr4g0071601 71.111 180 42 2 1 170 1 180 8.24e-79 232
Msa0041320 MtrunA17_Chr4g0018951 74.534 161 33 2 1 161 1 153 2.18e-73 218
Msa0041320 MtrunA17_Chr1g0206991 39.412 170 93 2 8 170 5 171 1.10e-40 135
Msa0041320 MtrunA17_Chr1g0206701 41.040 173 86 4 8 170 5 171 8.22e-40 135
Msa0041320 MtrunA17_Chr8g0355091 40.000 170 92 2 8 170 5 171 1.85e-39 134
Msa0041320 MtrunA17_Chr3g0099421 40.588 170 91 2 8 170 30 196 4.78e-39 133
Msa0041320 MtrunA17_Chr1g0149391 40.805 174 85 5 8 170 5 171 5.68e-39 132
Msa0041320 MtrunA17_Chr1g0206721 38.824 170 94 2 8 170 5 171 1.10e-38 132
Msa0041320 MtrunA17_Chr2g0292791 39.412 170 93 2 8 170 5 171 2.77e-38 130
Msa0041320 MtrunA17_Chr3g0119901 39.645 169 98 1 6 170 3 171 3.76e-37 127
Msa0041320 MtrunA17_Chr3g0085241 40.351 171 92 2 7 170 36 203 5.37e-37 128
Msa0041320 MtrunA17_Chr1g0208561 41.143 175 87 5 8 172 5 173 8.87e-37 127
Msa0041320 MtrunA17_Chr3g0089141 40.000 175 89 5 8 172 5 173 1.72e-35 123
Msa0041320 MtrunA17_Chr1g0208581 38.857 175 91 5 8 172 5 173 7.51e-34 119
Msa0041320 MtrunA17_Chr3g0099411 44.094 127 61 2 8 127 5 128 3.37e-32 114
Msa0041320 MtrunA17_Chr2g0325971 39.429 175 90 5 8 172 5 173 6.34e-32 114
Msa0041320 MtrunA17_Chr5g0422421 38.953 172 91 4 8 170 5 171 6.63e-32 114
Msa0041320 MtrunA17_Chr2g0300441 38.994 159 87 2 8 159 5 160 1.06e-30 111
Msa0041320 MtrunA17_Chr1g0188671 38.182 165 92 2 8 165 43 204 5.66e-30 110
Msa0041320 MtrunA17_Chr2g0317451 36.842 171 96 3 8 170 5 171 6.20e-30 109
Msa0041320 MtrunA17_Chr2g0317481 36.842 171 96 3 8 170 5 171 6.27e-30 109
Msa0041320 MtrunA17_Chr1g0187361 37.209 172 76 4 8 161 5 162 7.05e-30 109
Msa0041320 MtrunA17_Chr5g0419601 36.747 166 99 2 8 168 5 169 1.82e-29 108
Msa0041320 MtrunA17_Chr1g0206691 36.306 157 90 2 21 170 1 154 7.92e-29 106
Msa0041320 MtrunA17_Chr5g0422941 35.088 171 99 3 8 170 5 171 1.87e-28 105
Msa0041320 MtrunA17_Chr2g0300421 44.444 117 55 2 8 117 5 118 1.22e-26 99.4
Msa0041320 MtrunA17_Chr3g0089151 58.904 73 30 0 8 80 5 77 1.82e-26 97.4
Msa0041320 MtrunA17_Chr4g0074101 45.545 101 49 2 12 108 2 100 1.57e-24 94.4
Msa0041320 MtrunA17_Chr1g0169761 41.748 103 58 1 12 112 2 104 3.17e-24 93.2
Msa0041320 MtrunA17_Chr8g0376821 42.718 103 57 1 12 112 2 104 3.36e-24 93.2
Msa0041320 MtrunA17_Chr8g0356071 37.692 130 78 3 12 139 2 130 4.77e-24 92.4
Msa0041320 MtrunA17_Chr8g0357771 38.333 120 71 2 12 128 2 121 5.19e-23 90.1
Msa0041320 MtrunA17_Chr1g0175601 38.710 124 71 2 12 133 2 122 5.46e-23 90.1
Msa0041320 MtrunA17_Chr1g0187351 56.923 65 28 0 21 85 1 65 6.46e-23 86.7
Msa0041320 MtrunA17_Chr1g0175611 41.346 104 59 1 12 113 2 105 1.47e-22 88.6
Msa0041320 MtrunA17_Chr7g0238991 36.301 146 83 2 28 166 37 179 1.86e-22 90.1
Msa0041320 MtrunA17_Chr3g0111841 61.017 59 23 0 18 76 2 60 2.63e-22 85.1
Msa0041320 MtrunA17_Chr8g0345001 35.404 161 97 3 4 161 14 170 1.06e-21 86.7
Msa0041320 MtrunA17_Chr4g0052061 43.750 96 53 1 12 107 2 96 1.36e-21 85.9
Msa0041320 MtrunA17_Chr4g0052081 45.000 80 44 0 12 91 2 81 1.09e-20 84.0
Msa0041320 MtrunA17_Chr3g0077501 38.739 111 66 1 12 120 2 112 2.71e-20 84.0
Msa0041320 MtrunA17_Chr3g0111831 54.545 66 30 0 19 84 11 76 6.45e-20 79.3
Msa0041320 MtrunA17_Chr1g0180591 35.922 103 64 1 12 112 2 104 2.48e-19 80.5
Msa0041320 MtrunA17_Chr1g0204111 36.095 169 96 8 4 168 10 170 5.74e-19 81.3
Msa0041320 MtrunA17_Chr2g0284911 42.553 94 51 1 3 96 8 98 8.80e-19 80.9
Msa0041320 MtrunA17_Chr8g0380021 40.909 110 57 2 4 111 10 113 9.31e-19 80.5
Msa0041320 MtrunA17_Chr6g0474371 34.337 166 88 6 12 168 2 155 1.66e-18 78.6
Msa0041320 MtrunA17_Chr3g0097101 41.111 90 53 0 8 97 13 102 2.77e-18 79.0
Msa0041320 MtrunA17_Chr4g0020221 50.000 78 39 0 12 89 2 79 3.43e-18 79.0
Msa0041320 MtrunA17_Chr2g0279821 40.594 101 38 1 12 112 2 80 4.49e-18 78.6
Msa0041320 MtrunA17_Chr5g0427401 48.529 68 35 0 12 79 2 69 4.73e-18 78.2
Msa0041320 MtrunA17_Chr8g0351051 51.471 68 33 0 12 79 2 69 7.37e-18 78.2
Msa0041320 MtrunA17_Chr1g0173161 62.500 56 21 0 12 67 2 57 7.49e-18 73.9
Msa0041320 MtrunA17_Chr1g0159661 50.000 64 32 0 12 75 2 65 8.69e-18 76.6
Msa0041320 MtrunA17_Chr4g0049901 35.802 162 84 4 13 160 29 184 9.30e-18 77.8
Msa0041320 MtrunA17_Chr4g0057151 36.364 154 86 4 13 163 3 147 1.57e-17 76.3
Msa0041320 MtrunA17_Chr3g0125241 50.000 64 32 0 12 75 27 90 1.80e-17 76.3
Msa0041320 MtrunA17_Chr5g0425191 58.491 53 22 0 12 64 2 54 2.42e-17 73.2
Msa0041320 MtrunA17_Chr4g0061671 33.333 141 76 4 12 150 2 126 2.91e-17 75.1
Msa0041320 MtrunA17_Chr4g0044071 56.604 53 23 0 12 64 2 54 3.99e-17 73.2
Msa0041320 MtrunA17_Chr5g0427921 52.632 57 27 0 12 68 2 58 4.83e-17 71.2
Msa0041320 MtrunA17_Chr4g0049541 45.714 70 38 0 12 81 2 71 5.75e-17 75.1
Msa0041320 MtrunA17_Chr5g0412271 51.471 68 33 0 12 79 2 69 6.17e-17 75.1
Msa0041320 MtrunA17_Chr5g0412461 52.239 67 32 0 13 79 3 69 6.81e-17 75.1
Msa0041320 MtrunA17_Chr3g0093131 33.333 138 87 2 29 161 36 173 9.44e-17 73.9
Msa0041320 MtrunA17_Chr3g0134451 54.286 70 31 1 12 80 2 71 1.09e-16 75.9
Msa0041320 MtrunA17_Chr3g0142191 52.381 63 30 0 12 74 2 64 1.24e-16 74.3
Msa0041320 MtrunA17_Chr5g0404951 40.000 110 55 2 12 119 2 102 1.30e-16 74.3
Msa0041320 MtrunA17_Chr8g0351041 40.000 100 57 2 13 112 3 99 1.43e-16 72.8
Msa0041320 MtrunA17_Chr5g0411691 45.588 68 37 0 12 79 2 69 1.49e-16 74.3
Msa0041320 MtrunA17_Chr5g0420091 51.515 66 30 1 12 75 2 67 1.60e-16 73.9
Msa0041320 MtrunA17_Chr7g0246381 50.000 62 31 0 12 73 2 63 1.71e-16 70.1
Msa0041320 MtrunA17_Chr2g0308251 48.529 68 35 0 12 79 2 69 1.88e-16 70.5
Msa0041320 MtrunA17_Chr1g0164791 33.333 162 92 6 12 169 2 151 2.03e-16 73.9
Msa0041320 MtrunA17_Chr4g0061691 49.275 69 34 1 12 79 2 70 2.72e-16 73.6
Msa0041320 MtrunA17_Chr8g0366231 44.944 89 43 2 12 94 2 90 2.96e-16 73.6
Msa0041320 MtrunA17_Chr3g0111931 56.140 57 25 0 24 80 2 58 3.76e-16 70.5
Msa0041320 MtrunA17_Chr7g0246431 46.479 71 38 0 13 83 3 73 5.58e-16 72.4
Msa0041320 MtrunA17_Chr8g0351031 32.911 158 93 4 13 160 3 157 6.56e-16 72.4
Msa0041320 MtrunA17_Chr8g0377561 55.357 56 25 0 12 67 2 57 6.94e-16 69.3
Msa0041320 MtrunA17_Chr3g0122251 57.143 56 24 0 12 67 2 57 9.87e-16 72.4
Msa0041320 MtrunA17_Chr7g0220111 55.357 56 25 0 12 67 2 57 1.03e-15 72.4
Msa0041320 MtrunA17_Chr6g0455511 49.296 71 35 1 12 81 2 72 1.19e-15 72.0
Msa0041320 MtrunA17_Chr5g0420081 53.571 56 26 0 12 67 2 57 2.92e-15 70.9
Msa0041320 MtrunA17_Chr7g0220121 47.826 69 35 1 12 79 2 70 3.02e-15 71.2
Msa0041320 MtrunA17_Chr4g0060841 51.923 52 25 0 12 63 2 53 3.44e-13 66.2
Msa0041320 MtrunA17_Chr2g0302091 34.395 157 89 5 10 161 36 183 3.86e-13 64.7
Msa0041320 MtrunA17_Chr4g0018421 38.356 73 44 1 12 83 2 74 4.69e-13 64.3
Msa0041320 MtrunA17_Chr5g0417661 44.068 59 32 1 12 69 57 115 6.41e-13 62.4
Msa0041320 MtrunA17_Chr1g0166611 63.636 44 16 0 25 68 19 62 1.39e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041320 AT5G60440.1 39.623 159 89 2 8 159 3 161 4.76e-34 122
Msa0041320 AT1G65360.1 38.554 166 97 3 8 169 3 167 4.75e-30 109
Msa0041320 AT2G24840.1 34.810 158 98 3 10 162 61 218 7.08e-29 107
Msa0041320 AT4G36590.1 35.542 166 97 3 8 163 3 168 5.67e-27 102
Msa0041320 AT1G01530.1 36.095 169 95 4 8 168 3 166 9.05e-27 102
Msa0041320 AT1G72350.1 32.680 153 74 3 12 164 43 166 3.13e-23 92.0
Msa0041320 AT5G10140.2 44.545 110 54 3 12 120 2 105 1.88e-21 85.9
Msa0041320 AT5G10140.4 44.545 110 54 3 12 120 2 105 3.67e-21 85.9
Msa0041320 AT5G10140.1 44.545 110 54 3 12 120 2 105 4.89e-21 85.9
Msa0041320 AT5G10140.3 44.545 110 54 3 12 120 2 105 5.08e-21 85.5
Msa0041320 AT3G66656.1 45.833 96 51 1 12 107 2 96 7.37e-21 84.7
Msa0041320 AT2G34440.1 36.301 146 80 4 12 157 2 134 1.28e-20 84.0
Msa0041320 AT4G09960.2 35.461 141 74 4 12 150 2 127 2.39e-20 84.3
Msa0041320 AT4G09960.6 35.461 141 74 4 12 150 3 128 2.44e-20 84.7
Msa0041320 AT4G09960.1 35.461 141 74 4 12 150 2 127 2.47e-20 84.7
Msa0041320 AT4G09960.5 35.461 141 74 4 12 150 12 137 2.63e-20 84.7
Msa0041320 AT4G09960.3 35.714 140 73 4 12 149 28 152 4.11e-20 84.7
Msa0041320 AT5G51870.5 37.500 144 76 3 8 150 21 151 6.85e-20 82.8
Msa0041320 AT5G51870.3 35.503 169 95 3 1 168 1 156 1.09e-19 82.8
Msa0041320 AT3G04100.1 31.677 161 98 4 8 158 10 168 1.93e-19 81.6
Msa0041320 AT4G09960.4 32.624 141 78 2 12 150 97 222 2.11e-19 84.0
Msa0041320 AT5G51870.1 36.306 157 86 3 13 168 3 146 3.20e-19 81.3
Msa0041320 AT1G28460.1 34.132 167 99 4 8 165 4 168 3.39e-19 80.5
Msa0041320 AT3G54340.1 55.556 63 28 0 12 74 2 64 3.48e-19 81.6
Msa0041320 AT5G51870.2 37.410 139 73 3 13 150 3 128 4.30e-19 80.1
Msa0041320 AT5G51870.4 36.306 157 86 3 13 168 3 146 5.12e-19 80.9
Msa0041320 AT4G18960.1 36.508 126 62 3 9 124 15 132 1.35e-18 80.5
Msa0041320 AT2G45660.2 32.911 158 94 3 13 161 3 157 1.45e-18 78.2
Msa0041320 AT4G24540.1 55.882 68 30 0 12 79 2 69 1.57e-18 79.7
Msa0041320 AT3G57230.2 42.169 83 46 1 12 92 2 84 2.40e-18 77.4
Msa0041320 AT4G37940.4 45.946 74 40 0 12 85 2 75 3.22e-18 78.6
Msa0041320 AT1G77980.1 50.000 70 34 1 12 80 2 71 3.43e-18 80.5
Msa0041320 AT1G77950.3 50.000 70 34 1 12 80 2 71 3.66e-18 79.3
Msa0041320 AT1G77950.2 50.000 70 34 1 12 80 2 71 3.66e-18 79.3
Msa0041320 AT1G77950.1 50.000 70 34 1 12 80 2 71 3.66e-18 79.3
Msa0041320 AT1G77950.4 50.000 70 34 1 12 80 2 71 3.66e-18 79.3
Msa0041320 AT2G22540.3 53.731 67 31 0 13 79 3 69 3.82e-18 79.0
Msa0041320 AT2G22540.1 53.731 67 31 0 13 79 3 69 3.82e-18 79.0
Msa0041320 AT2G45650.1 43.878 98 33 1 12 109 2 77 3.86e-18 79.3
Msa0041320 AT4G37940.1 45.946 74 40 0 12 85 2 75 3.99e-18 79.0
Msa0041320 AT4G37940.3 45.946 74 40 0 12 85 2 75 6.92e-18 77.0
Msa0041320 AT1G22130.1 57.895 57 24 0 12 68 2 58 7.49e-18 79.7
Msa0041320 AT3G57230.1 42.169 83 46 1 12 92 2 84 7.84e-18 78.2
Msa0041320 AT3G57230.4 42.169 83 46 1 12 92 2 84 7.84e-18 78.2
Msa0041320 AT2G22630.1 37.069 116 68 2 12 124 2 115 9.13e-18 77.8
Msa0041320 AT2G22630.2 37.069 116 68 2 12 124 2 115 9.13e-18 77.8
Msa0041320 AT5G13790.1 54.412 68 31 0 12 79 2 69 1.01e-17 78.6
Msa0041320 AT2G45660.1 38.938 113 61 2 13 120 3 112 1.03e-17 77.4
Msa0041320 AT5G62165.14 46.753 77 41 0 13 89 3 79 1.09e-17 74.7
Msa0041320 AT5G13790.2 54.412 68 31 0 12 79 2 69 1.15e-17 78.2
Msa0041320 AT3G58780.5 33.613 119 77 1 4 120 15 133 1.21e-17 77.8
Msa0041320 AT3G58780.1 33.613 119 77 1 4 120 9 127 1.25e-17 77.8
Msa0041320 AT5G62165.6 46.753 77 41 0 13 89 3 79 1.28e-17 75.9
Msa0041320 AT5G62165.9 46.753 77 41 0 13 89 3 79 1.28e-17 75.9
Msa0041320 AT5G62165.7 46.753 77 41 0 13 89 3 79 1.28e-17 75.9
Msa0041320 AT5G62165.8 46.753 77 41 0 13 89 3 79 1.28e-17 75.9
Msa0041320 AT5G62165.13 46.753 77 41 0 13 89 3 79 1.28e-17 75.9
Msa0041320 AT3G58780.4 33.613 119 77 1 4 120 9 127 1.36e-17 78.2
Msa0041320 AT5G62165.17 46.753 77 41 0 13 89 3 79 1.60e-17 75.5
Msa0041320 AT5G62165.12 46.753 77 41 0 13 89 3 79 1.60e-17 75.5
Msa0041320 AT5G62165.11 46.753 77 41 0 13 89 3 79 1.60e-17 75.5
Msa0041320 AT5G51860.2 48.649 74 38 0 13 86 3 76 1.60e-17 76.6
Msa0041320 AT2G22540.2 64.151 53 19 0 13 65 3 55 1.68e-17 77.4
Msa0041320 AT1G29962.1 30.814 172 101 5 8 165 4 171 1.77e-17 76.3
Msa0041320 AT4G22950.2 33.333 129 85 1 13 140 3 131 1.79e-17 75.9
Msa0041320 AT2G42830.1 42.056 107 50 4 9 111 14 112 1.85e-17 77.4
Msa0041320 AT2G42830.2 42.056 107 50 4 9 111 14 112 2.20e-17 77.0
Msa0041320 AT5G51860.1 48.649 74 38 0 13 86 3 76 2.55e-17 76.3
Msa0041320 AT5G23260.4 46.753 77 39 1 6 80 12 88 4.80e-17 76.6
Msa0041320 AT3G57390.3 43.158 95 43 2 12 106 2 85 4.83e-17 75.9
Msa0041320 AT5G23260.3 30.769 156 93 3 12 163 2 146 5.02e-17 75.9
Msa0041320 AT5G23260.1 46.753 77 39 1 6 80 12 88 5.03e-17 76.3
Msa0041320 AT4G22950.3 33.333 129 85 1 13 140 3 131 5.72e-17 75.5
Msa0041320 AT4G22950.1 33.333 129 85 1 13 140 3 131 5.72e-17 75.5
Msa0041320 AT5G62165.10 46.753 77 41 0 13 89 3 79 6.82e-17 74.7
Msa0041320 AT5G62165.4 46.753 77 41 0 13 89 3 79 6.82e-17 74.7
Msa0041320 AT5G62165.3 46.753 77 41 0 13 89 3 79 7.60e-17 75.1
Msa0041320 AT5G62165.1 46.753 77 41 0 13 89 3 79 7.60e-17 75.1
Msa0041320 AT5G62165.2 46.753 77 41 0 13 89 3 79 7.60e-17 75.1
Msa0041320 AT1G28450.1 32.530 166 98 5 8 161 4 167 9.03e-17 74.3
Msa0041320 AT3G57390.1 51.471 68 33 0 12 79 2 69 1.19e-16 75.5
Msa0041320 AT3G58780.2 50.769 65 32 0 4 68 9 73 1.21e-16 75.1
Msa0041320 AT3G58780.3 50.769 65 32 0 4 68 9 73 1.40e-16 75.5
Msa0041320 AT4G11880.2 53.333 60 28 0 13 72 3 62 2.52e-16 72.8
Msa0041320 AT4G11880.3 53.333 60 28 0 13 72 3 62 2.52e-16 72.8
Msa0041320 AT5G23260.2 48.611 72 35 1 12 81 2 73 2.58e-16 74.3
Msa0041320 AT3G30260.1 32.374 139 83 4 12 148 2 131 3.97e-16 73.9
Msa0041320 AT2G14210.1 39.604 101 40 2 12 112 2 81 4.60e-16 73.6
Msa0041320 AT2G14210.2 39.604 101 40 2 12 112 2 81 6.50e-16 73.2
Msa0041320 AT1G69120.2 52.632 57 27 0 12 68 2 58 7.18e-16 72.8
Msa0041320 AT5G15800.1 41.489 94 51 2 12 101 2 95 8.89e-16 72.8
Msa0041320 AT4G11880.4 58.182 55 23 0 13 67 3 57 9.99e-16 72.4
Msa0041320 AT4G11880.1 58.182 55 23 0 13 67 3 57 9.99e-16 72.4
Msa0041320 AT1G26310.1 54.386 57 26 0 12 68 2 58 1.01e-15 72.8
Msa0041320 AT5G20240.2 47.222 72 36 1 12 81 2 73 1.09e-15 70.5
Msa0041320 AT5G60910.1 57.407 54 23 0 12 65 2 55 1.10e-15 72.4
Msa0041320 AT3G02310.2 41.489 94 51 2 12 101 2 95 1.65e-15 71.2
Msa0041320 AT5G20240.1 32.394 142 89 4 12 148 2 141 1.69e-15 71.2
Msa0041320 AT5G15800.2 41.489 94 51 2 12 101 2 95 1.70e-15 72.4
Msa0041320 AT2G03710.3 44.595 74 39 1 12 83 2 75 1.81e-15 70.9
Msa0041320 AT1G69120.1 55.556 54 24 0 12 65 2 55 2.04e-15 72.0
Msa0041320 AT3G61120.1 44.286 70 39 0 12 81 2 71 2.11e-15 71.6
Msa0041320 AT1G24260.1 55.357 56 25 0 12 67 2 57 2.21e-15 71.6
Msa0041320 AT1G24260.2 55.357 56 25 0 12 67 2 57 2.24e-15 71.6
Msa0041320 AT1G24260.3 55.357 56 25 0 12 67 2 57 2.43e-15 71.6
Msa0041320 AT2G03710.1 53.571 56 26 0 12 67 2 57 2.54e-15 71.6
Msa0041320 AT2G03710.2 53.571 56 26 0 12 67 2 57 2.67e-15 71.6
Msa0041320 AT1G71692.1 41.975 81 46 1 13 92 3 83 4.16e-15 70.5
Msa0041320 AT3G02310.1 55.357 56 25 0 12 67 2 57 4.66e-15 70.9
Msa0041320 AT5G65070.4 43.478 69 38 1 12 79 2 70 5.01e-15 68.9
Msa0041320 AT5G65050.2 43.590 78 42 2 12 87 2 79 5.37e-15 69.3
Msa0041320 AT5G65060.2 30.909 165 77 6 12 173 2 132 8.91e-15 68.9
Msa0041320 AT5G65060.3 30.994 171 80 6 12 173 2 143 1.17e-14 68.9
Msa0041320 AT5G65070.1 43.478 69 38 1 12 79 2 70 1.18e-14 68.9
Msa0041320 AT5G65050.1 44.928 69 37 1 12 79 2 70 1.24e-14 68.6
Msa0041320 AT5G65050.5 44.928 69 37 1 12 79 2 70 1.32e-14 68.6
Msa0041320 AT5G65050.3 44.928 69 37 1 12 79 2 70 1.35e-14 68.9
Msa0041320 AT1G47760.1 44.615 65 36 0 12 76 2 66 1.46e-14 68.6
Msa0041320 AT5G65060.1 30.994 171 80 6 12 173 2 143 1.80e-14 68.6
Msa0041320 AT5G65070.5 43.478 69 38 1 12 79 2 70 2.43e-14 68.2
Msa0041320 AT4G37435.1 53.571 56 26 0 12 67 2 57 2.44e-14 67.8
Msa0041320 AT5G65070.2 43.478 69 38 1 12 79 2 70 2.82e-14 68.6
Msa0041320 AT5G65070.3 47.368 57 30 0 12 68 2 58 8.05e-14 67.4
Msa0041320 AT1G18750.4 46.429 56 30 0 12 67 2 57 4.42e-13 66.6
Msa0041320 AT1G18750.1 46.429 56 30 0 12 67 2 57 5.36e-13 66.2
Msa0041320 AT1G18750.3 46.429 56 30 0 12 67 2 57 5.53e-13 66.2
Msa0041320 AT1G69540.1 27.072 181 108 6 12 170 2 180 7.49e-13 65.9
Msa0041320 AT1G69540.2 27.072 181 108 6 12 170 2 180 1.20e-12 65.1
Msa0041320 AT2G03060.3 46.552 58 30 1 12 68 2 59 2.67e-12 64.3
Msa0041320 AT2G03060.7 46.552 58 30 1 12 68 2 59 2.67e-12 64.3
Msa0041320 AT2G03060.1 46.552 58 30 1 12 68 2 59 2.67e-12 64.3
Msa0041320 AT2G03060.2 46.552 58 30 1 12 68 2 59 3.15e-12 63.9
Msa0041320 AT5G49420.1 26.316 171 92 5 8 169 3 148 4.05e-12 63.5
Msa0041320 AT5G65080.2 41.667 60 35 0 6 65 3 62 6.44e-12 61.6
Msa0041320 AT5G65080.3 41.667 60 35 0 6 65 3 62 6.62e-12 61.6
Msa0041320 AT5G49490.1 35.443 79 47 1 8 82 41 119 1.65e-11 61.6
Msa0041320 AT1G17310.1 31.373 153 73 3 12 164 48 168 1.70e-11 60.8
Msa0041320 AT1G17310.2 31.373 153 73 3 12 164 59 179 1.86e-11 60.8
Msa0041320 AT1G31140.1 41.558 77 40 2 18 89 8 84 3.92e-11 59.7
Msa0041320 AT1G31140.2 41.558 77 40 2 18 89 8 84 4.06e-11 59.7
Msa0041320 AT2G26320.1 39.189 74 43 1 8 79 14 87 6.57e-11 57.0

Find 30 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGTTGATGTTGAAATTT+TGG 0.116654 1_1:+71669735 Msa0041320:CDS
TGCAGAACTTGAACAATTTA+TGG 0.173791 1_1:+71669813 Msa0041320:CDS
TAAAGAGAAAGCTTCTTAAA+AGG 0.182684 1_1:+71669851 Msa0041320:CDS
CTTTCTCTTTAATTCATAAA+TGG 0.197014 1_1:-71669839 None:intergenic
GCACAATTTCACCATGAATA+TGG 0.275162 1_1:+71669369 None:intergenic
TCTTTGGTTATCCATATTCA+TGG 0.348175 1_1:-71669380 None:intergenic
TTGAGGATTGTGTTGGTGTT+GGG 0.379243 1_1:-71669589 None:intergenic
TGAGAAAGTGACTTGCTTGT+TGG 0.389819 1_1:-71669455 None:intergenic
GGCATTAAAGATGTTAGAGT+TGG 0.397789 1_1:+71669702 Msa0041320:CDS
TTTGAGGATTCAAAATCAAC+AGG 0.409000 1_1:+71669637 Msa0041320:CDS
AAAGAGAAAGCTTCTTAAAA+GGG 0.426590 1_1:+71669852 Msa0041320:CDS
TTCCTTTGATGTAGCTATTG+AGG 0.428665 1_1:-71669606 None:intergenic
GCCGACAAACTATTCTGCTT+TGG 0.430644 1_1:+71669562 Msa0041320:CDS
CAAAGGAACCACCGAGTTTG+AGG 0.455132 1_1:+71669621 Msa0041320:CDS
ATTGAGGATTGTGTTGGTGT+TGG 0.457788 1_1:-71669590 None:intergenic
ACCAAAGCAGAATAGTTTGT+CGG 0.485264 1_1:-71669563 None:intergenic
AAGCAGAATAGTTTGTCGGC+AGG 0.502671 1_1:-71669559 None:intergenic
AAAGTACAATAGACAATATG+AGG 0.506411 1_1:+71669678 Msa0041320:CDS
AACCAAAGAAAGAAAACCAC+AGG 0.525657 1_1:+71669394 Msa0041320:CDS
AGCAGAATAGTTTGTCGGCA+GGG 0.533868 1_1:-71669558 None:intergenic
CAAACAATTCAACTACATGA+AGG 0.540049 1_1:-71669893 None:intergenic
GCAGAATAGTTTGTCGGCAG+GGG 0.546169 1_1:-71669557 None:intergenic
TTCAATCTTCTTGCGCCCTG+TGG 0.560440 1_1:-71669410 None:intergenic
AAACAATTCAACTACATGAA+GGG 0.562122 1_1:-71669892 None:intergenic
GTAGCTATTGAGGATTGTGT+TGG 0.588353 1_1:-71669596 None:intergenic
ATCCTCAATAGCTACATCAA+AGG 0.589236 1_1:+71669604 Msa0041320:CDS
ACTTTCTCAAAGAGAAGACA+AGG 0.611669 1_1:+71669469 Msa0041320:CDS
TTTGAAGAAAGGTGACTGGT+GGG 0.616620 1_1:+71669765 Msa0041320:CDS
GTACAATAGACAATATGAGG+AGG 0.673698 1_1:+71669681 Msa0041320:CDS
ACCAAAGAAAGAAAACCACA+GGG 0.726086 1_1:+71669395 Msa0041320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTCTCTTTAATTCATAAA+TGG - chr1_1:71669842-71669861 None:intergenic 20.0%
! AAAGTACAATAGACAATATG+AGG + chr1_1:71669678-71669697 Msa0041320:CDS 25.0%
!!! ACTAGTTGATGTTGAAATTT+TGG + chr1_1:71669735-71669754 Msa0041320:CDS 25.0%
! TAAAGAGAAAGCTTCTTAAA+AGG + chr1_1:71669851-71669870 Msa0041320:CDS 25.0%
! AAAGAGAAAGCTTCTTAAAA+GGG + chr1_1:71669852-71669871 Msa0041320:CDS 25.0%
! TGATTTTGAATCCTCAAACT+CGG - chr1_1:71669635-71669654 None:intergenic 30.0%
TTTGAGGATTCAAAATCAAC+AGG + chr1_1:71669637-71669656 Msa0041320:CDS 30.0%
! TTGTCTATTGTACTTTTCGT+AGG - chr1_1:71669674-71669693 None:intergenic 30.0%
!!! TTGGCCAATTTTTTGAAGAA+AGG + chr1_1:71669754-71669773 Msa0041320:CDS 30.0%
GTCACCTTTCTTCAAAAAAT+TGG - chr1_1:71669761-71669780 None:intergenic 30.0%
!!! ATTTTTTGAAGAAAGGTGAC+TGG + chr1_1:71669761-71669780 Msa0041320:CDS 30.0%
TGCAGAACTTGAACAATTTA+TGG + chr1_1:71669813-71669832 Msa0041320:CDS 30.0%
AACCAAAGAAAGAAAACCAC+AGG + chr1_1:71669394-71669413 Msa0041320:CDS 35.0%
ACCAAAGAAAGAAAACCACA+GGG + chr1_1:71669395-71669414 Msa0041320:CDS 35.0%
ACTTTCTCAAAGAGAAGACA+AGG + chr1_1:71669469-71669488 Msa0041320:CDS 35.0%
! ACCAAAGCAGAATAGTTTGT+CGG - chr1_1:71669566-71669585 None:intergenic 35.0%
ATCCTCAATAGCTACATCAA+AGG + chr1_1:71669604-71669623 Msa0041320:CDS 35.0%
TTCCTTTGATGTAGCTATTG+AGG - chr1_1:71669609-71669628 None:intergenic 35.0%
GTACAATAGACAATATGAGG+AGG + chr1_1:71669681-71669700 Msa0041320:CDS 35.0%
GGCATTAAAGATGTTAGAGT+TGG + chr1_1:71669702-71669721 Msa0041320:CDS 35.0%
!! TGAGAAAGTGACTTGCTTGT+TGG - chr1_1:71669458-71669477 None:intergenic 40.0%
! TTGAGGATTGTGTTGGTGTT+GGG - chr1_1:71669592-71669611 None:intergenic 40.0%
! ATTGAGGATTGTGTTGGTGT+TGG - chr1_1:71669593-71669612 None:intergenic 40.0%
GTAGCTATTGAGGATTGTGT+TGG - chr1_1:71669599-71669618 None:intergenic 40.0%
! TTTTGAATCCTCAAACTCGG+TGG - chr1_1:71669632-71669651 None:intergenic 40.0%
!! TTTTGAAGAAAGGTGACTGG+TGG + chr1_1:71669764-71669783 Msa0041320:CDS 40.0%
TTTGAAGAAAGGTGACTGGT+GGG + chr1_1:71669765-71669784 Msa0041320:CDS 40.0%
! GCCCTGTGGTTTTCTTTCTT+TGG - chr1_1:71669399-71669418 None:intergenic 45.0%
! AGCAGAATAGTTTGTCGGCA+GGG - chr1_1:71669561-71669580 None:intergenic 45.0%
! AAGCAGAATAGTTTGTCGGC+AGG - chr1_1:71669562-71669581 None:intergenic 45.0%
GCCGACAAACTATTCTGCTT+TGG + chr1_1:71669562-71669581 Msa0041320:CDS 45.0%
TTCAATCTTCTTGCGCCCTG+TGG - chr1_1:71669413-71669432 None:intergenic 50.0%
! GCAGAATAGTTTGTCGGCAG+GGG - chr1_1:71669560-71669579 None:intergenic 50.0%
CAAAGGAACCACCGAGTTTG+AGG + chr1_1:71669621-71669640 Msa0041320:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71669382 71669903 71669382 ID=Msa0041320;Name=Msa0041320
chr1_1 mRNA 71669382 71669903 71669382 ID=Msa0041320-mRNA-1;Parent=Msa0041320;Name=Msa0041320-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|173
chr1_1 exon 71669382 71669903 71669382 ID=Msa0041320-mRNA-1:exon:23736;Parent=Msa0041320-mRNA-1
chr1_1 CDS 71669382 71669903 71669382 ID=Msa0041320-mRNA-1:cds;Parent=Msa0041320-mRNA-1
Gene Sequence

>Msa0041320

ATGAATATGGATAACCAAAGAAAGAAAACCACAGGGCGCAAGAAGATTGAAATCAAAAAGCTTGACAAAGAATCCAACAAGCAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATCGTGTTTTCCCCTGCCGACAAACTATTCTGCTTTGGTCAACCCAACACCAACACAATCCTCAATAGCTACATCAAAGGAACCACCGAGTTTGAGGATTCAAAATCAACAGGAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAATAAGAAACTAGTTGATGTTGAAATTTTGGCCAATTTTTTGAAGAAAGGTGACTGGTGGGATGATTCAATTGATGATATAAGTAGTGCAGAACTTGAACAATTTATGGTGTCCATTTATGAATTAAAGAGAAAGCTTCTTAAAAGGGCTGATGAACTTATGATGCCCTTCATGTAG
Protein sequence

>Msa0041320

MNMDNQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTNTILNSYIKGTTEFEDSKSTGNSSTYEKYNRQYEEALKMLELENKKLVDVEILANFLKKGDWWDDSIDDISSAELEQFMVSIYELKRKLLKRADELMMPFM*