AlfalfaGEDB | Msa0041360

M. sativa cultivar zhongmu-4 / Msa0041360

KEGG: K04454|K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041360	sp\|Q9FKK2\|AGL62_ARATH	62.500	128	46	1	5	130	3	130	1.38e-50	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0041360	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041360	MtrunA17_Chr1g0206721	92.308	130	10	1	130	1	130	7.60e-85	247
Msa0041360	MtrunA17_Chr1g0206701	92.308	130	10	1	130	1	130	1.69e-84	246
Msa0041360	MtrunA17_Chr3g0099411	93.651	126	8	1	126	1	126	1.06e-83	244
Msa0041360	MtrunA17_Chr8g0355091	91.538	130	11	1	130	1	130	1.58e-83	244
Msa0041360	MtrunA17_Chr1g0149391	89.922	129	13	1	129	1	129	2.28e-82	241
Msa0041360	MtrunA17_Chr3g0099421	88.281	128	15	1	128	26	153	6.08e-80	236
Msa0041360	MtrunA17_Chr1g0206991	86.923	130	17	1	130	1	130	1.92e-79	232
Msa0041360	MtrunA17_Chr2g0292791	86.154	130	18	1	130	1	130	8.11e-78	229
Msa0041360	MtrunA17_Chr1g0208561	79.231	130	27	1	130	1	130	3.39e-72	215
Msa0041360	MtrunA17_Chr3g0089141	79.231	130	27	1	130	1	130	1.18e-71	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041360	AT5G60440.1	62.500	128	46	1	5	130	3	130	1.40e-51	165
Msa0041360	AT4G36590.1	52.419	124	52	2	5	123	3	124	1.60e-36	125
Msa0041360	AT1G01530.1	56.604	106	44	1	4	109	2	105	2.63e-36	124
Msa0041360	AT2G24840.1	50.000	128	56	3	6	130	60	182	2.65e-35	122
Msa0041360	AT1G65360.1	48.246	114	57	1	5	118	3	114	2.40e-33	116
Msa0041360	AT2G34440.1	43.363	113	63	1	9	121	2	113	7.13e-28	101
Msa0041360	AT3G66656.1	42.017	119	65	1	9	123	2	120	1.16e-25	95.5
Msa0041360	AT1G72350.1	53.425	73	32	1	9	81	43	113	3.57e-22	87.8
Msa0041360	AT3G04100.1	33.913	115	73	1	2	113	7	121	1.14e-20	83.6
Msa0041360	AT4G22950.2	47.368	76	40	0	10	85	3	78	2.66e-19	79.0

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Find 23 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAAATACCTTCTCTCC+AGG	0.563686	1_1:+71681305	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	1_1:-71681395	Msa0041360:CDS
AGCGACATGTGCACCACAGA+TGG	0.558797	1_1:+71681343	None:intergenic
AGTATTGAGCTCGCGCACGT+TGG	0.584782	1_1:+71681184	None:intergenic
AGTGAGCTTTGTACCATCTG+TGG	0.652271	1_1:-71681356	Msa0041360:CDS
ATCTATGACCGTATCCACAT+TGG	0.545676	1_1:+71681274	None:intergenic
ATTGCACGGTACCATTGTTT+TGG	0.300796	1_1:+71681228	None:intergenic
CGAGTCCCACCCCAAAACAA+TGG	0.639467	1_1:-71681239	Msa0041360:CDS
CGTAGTGGGCTCTTCAAGAA+AGG	0.499918	1_1:-71681380	Msa0041360:CDS
CTTCAACCATGTCGAGTGGA+AGG	0.562158	1_1:-71681481	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAATACCTTCTCTCC+AGG	+	chr1_1:71681274-71681293	None:intergenic	35.0%
TCTATGACCGTATCCACATT+GGG	+	chr1_1:71681304-71681323	None:intergenic	40.0%
ATCTATGACCGTATCCACAT+TGG	+	chr1_1:71681305-71681324	None:intergenic	40.0%
GTGAGTCTCAATGAATTGCA+CGG	+	chr1_1:71681365-71681384	None:intergenic	40.0%
CTTTCTTGAAGAGCCCACTA+CGG	+	chr1_1:71681198-71681217	None:intergenic	45.0%
TTCATTTGGCCAACCCAATG+TGG	-	chr1_1:71681288-71681307	Msa0041360:CDS	45.0%
TGGCCAACCCAATGTGGATA+CGG	-	chr1_1:71681294-71681313	Msa0041360:CDS	50.0%
TGACCGTATCCACATTGGGT+TGG	+	chr1_1:71681300-71681319	None:intergenic	50.0%
GACTCAGATCAACCAGCTAC+TGG	-	chr1_1:71681420-71681439	Msa0041360:CDS	50.0%
TCTTCTCGTTGTCCAGTAGC+TGG	+	chr1_1:71681435-71681454	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	71681103	71681495	71681103	ID=Msa0041360;Name=Msa0041360
chr1_1	mRNA	71681103	71681495	71681103	ID=Msa0041360-mRNA-1;Parent=Msa0041360;Name=Msa0041360-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|130
chr1_1	exon	71681103	71681495	71681103	ID=Msa0041360-mRNA-1:exon:23751;Parent=Msa0041360-mRNA-1
chr1_1	CDS	71681103	71681495	71681103	ID=Msa0041360-mRNA-1:cds;Parent=Msa0041360-mRNA-1

Gene Sequence

>Msa0041360

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGGCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCGTGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAGCTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACATAG

Protein sequence

>Msa0041360

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKGSELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTVQFIETHRSANVRELNTQLTQINQLLDNEKKRAEELRHLRKAT*