AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041360 MtrunA17_Chr1g0206721 92.308 130 10 0 1 130 1 130 7.60e-85 247
Msa0041360 MtrunA17_Chr1g0206701 92.308 130 10 0 1 130 1 130 1.69e-84 246
Msa0041360 MtrunA17_Chr3g0099411 93.651 126 8 0 1 126 1 126 1.06e-83 244
Msa0041360 MtrunA17_Chr8g0355091 91.538 130 11 0 1 130 1 130 1.58e-83 244
Msa0041360 MtrunA17_Chr1g0149391 89.922 129 13 0 1 129 1 129 2.28e-82 241
Msa0041360 MtrunA17_Chr3g0099421 88.281 128 15 0 1 128 26 153 6.08e-80 236
Msa0041360 MtrunA17_Chr1g0206991 86.923 130 17 0 1 130 1 130 1.92e-79 232
Msa0041360 MtrunA17_Chr2g0292791 86.154 130 18 0 1 130 1 130 8.11e-78 229
Msa0041360 MtrunA17_Chr1g0208561 79.231 130 27 0 1 130 1 130 3.39e-72 215
Msa0041360 MtrunA17_Chr3g0089141 79.231 130 27 0 1 130 1 130 1.18e-71 214
Msa0041360 MtrunA17_Chr1g0206691 88.496 113 13 0 18 130 1 113 6.02e-70 209
Msa0041360 MtrunA17_Chr2g0325971 77.692 130 29 0 1 130 1 130 1.57e-68 206
Msa0041360 MtrunA17_Chr1g0208581 75.385 130 32 0 1 130 1 130 4.07e-67 202
Msa0041360 MtrunA17_Chr5g0419601 74.219 128 33 0 1 128 1 128 5.76e-66 199
Msa0041360 MtrunA17_Chr2g0300421 74.219 128 33 0 1 128 1 128 8.67e-66 197
Msa0041360 MtrunA17_Chr1g0187361 74.219 128 33 0 1 128 1 128 5.35e-65 197
Msa0041360 MtrunA17_Chr3g0089151 72.868 129 35 0 1 129 1 129 1.69e-64 192
Msa0041360 MtrunA17_Chr1g0188671 71.875 128 36 0 1 128 39 166 4.65e-64 196
Msa0041360 MtrunA17_Chr2g0300441 74.419 129 33 0 1 129 1 129 1.76e-62 191
Msa0041360 MtrunA17_Chr2g0317481 69.531 128 39 0 1 128 1 128 3.57e-62 190
Msa0041360 MtrunA17_Chr2g0317451 69.531 128 39 0 1 128 1 128 3.69e-62 190
Msa0041360 MtrunA17_Chr5g0422941 68.504 127 40 0 1 127 1 127 8.36e-61 186
Msa0041360 MtrunA17_Chr5g0422421 67.188 128 42 0 1 128 1 128 1.34e-56 176
Msa0041360 MtrunA17_Chr3g0085241 60.630 127 50 0 3 129 35 161 7.35e-54 169
Msa0041360 MtrunA17_Chr3g0119901 62.602 123 46 0 7 129 7 129 2.22e-53 166
Msa0041360 MtrunA17_Chr3g0111931 64.078 103 37 0 21 123 2 104 2.17e-45 143
Msa0041360 MtrunA17_Chr7g0238991 66.972 109 35 1 16 123 27 135 4.95e-45 147
Msa0041360 MtrunA17_Chr1g0187351 78.788 66 14 0 18 83 1 66 2.56e-35 116
Msa0041360 MtrunA17_Chr2g0333981 42.520 127 63 2 5 128 8 127 5.75e-34 116
Msa0041360 MtrunA17_Chr8g0379021 43.307 127 62 2 5 128 8 127 1.01e-32 113
Msa0041360 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 2.81e-32 108
Msa0041360 MtrunA17_Chr4g0018951 47.200 125 58 2 5 129 8 124 1.23e-31 110
Msa0041360 MtrunA17_Chr4g0071601 43.307 127 62 2 5 128 8 127 1.79e-27 100
Msa0041360 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 1.03e-26 95.1
Msa0041360 MtrunA17_Chr1g0175601 44.144 111 59 2 9 118 2 110 8.82e-26 95.5
Msa0041360 MtrunA17_Chr1g0169761 44.554 101 54 1 9 109 2 100 1.42e-24 92.4
Msa0041360 MtrunA17_Chr1g0180591 42.342 111 61 2 9 118 2 110 3.15e-24 91.7
Msa0041360 MtrunA17_Chr8g0357771 40.800 125 69 2 9 130 2 124 5.08e-24 91.3
Msa0041360 MtrunA17_Chr8g0376821 42.857 112 59 3 9 118 2 110 5.30e-24 91.3
Msa0041360 MtrunA17_Chr1g0175611 41.593 113 64 1 9 121 2 112 2.26e-23 89.4
Msa0041360 MtrunA17_Chr8g0356071 38.889 126 68 3 9 130 2 122 3.10e-23 88.6
Msa0041360 MtrunA17_Chr4g0074101 37.302 126 63 4 9 118 2 127 4.00e-23 89.4
Msa0041360 MtrunA17_Chr4g0052061 39.623 106 62 1 9 114 2 105 4.04e-21 83.2
Msa0041360 MtrunA17_Chr4g0052081 39.623 106 63 1 9 113 2 107 6.48e-20 80.5
Msa0041360 MtrunA17_Chr3g0077501 50.000 68 34 0 9 76 2 69 1.85e-18 77.8
Msa0041360 MtrunA17_Chr4g0057151 47.945 73 38 0 10 82 3 75 4.04e-18 76.6
Msa0041360 MtrunA17_Chr3g0097101 40.566 106 53 1 3 108 11 106 4.20e-18 77.0
Msa0041360 MtrunA17_Chr4g0049901 53.030 66 31 0 10 75 29 94 6.23e-18 76.6
Msa0041360 MtrunA17_Chr8g0351041 44.872 78 43 0 10 87 3 80 2.29e-17 73.6
Msa0041360 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 3.95e-17 74.3
Msa0041360 MtrunA17_Chr8g0351051 48.529 68 35 0 9 76 2 69 9.02e-17 73.6
Msa0041360 MtrunA17_Chr6g0474371 46.377 69 36 1 9 76 2 70 9.57e-17 72.8
Msa0041360 MtrunA17_Chr2g0284911 37.273 110 68 1 9 118 17 125 1.58e-16 73.2
Msa0041360 MtrunA17_Chr8g0351031 44.304 79 44 0 10 88 3 81 1.60e-16 72.8
Msa0041360 MtrunA17_Chr1g0204111 47.059 68 36 0 9 76 18 85 2.11e-16 72.8
Msa0041360 MtrunA17_Chr4g0061691 44.928 69 37 1 9 76 2 70 2.25e-16 72.4
Msa0041360 MtrunA17_Chr8g0380021 46.667 75 40 0 2 76 11 85 2.37e-16 72.4
Msa0041360 MtrunA17_Chr7g0246431 47.761 67 35 0 10 76 3 69 2.59e-16 72.0
Msa0041360 MtrunA17_Chr4g0020221 41.463 82 48 0 9 90 2 83 3.51e-16 72.4
Msa0041360 MtrunA17_Chr2g0279821 45.588 68 37 0 9 76 2 69 4.49e-16 71.6
Msa0041360 MtrunA17_Chr4g0049541 44.118 68 38 0 9 76 2 69 1.14e-15 70.5
Msa0041360 MtrunA17_Chr5g0404951 47.143 70 35 1 9 76 2 71 1.71e-15 70.1
Msa0041360 MtrunA17_Chr6g0455511 46.377 69 36 1 9 76 2 70 1.91e-15 70.1
Msa0041360 MtrunA17_Chr7g0220111 46.377 69 36 1 9 76 2 70 2.91e-15 69.7
Msa0041360 MtrunA17_Chr5g0411691 45.588 68 37 0 9 76 2 69 4.54e-15 68.9
Msa0041360 MtrunA17_Chr8g0366231 43.478 69 38 1 9 76 2 70 5.96e-15 68.6
Msa0041360 MtrunA17_Chr1g0173161 53.571 56 26 0 9 64 2 57 6.03e-15 65.1
Msa0041360 MtrunA17_Chr5g0412271 44.118 68 38 0 9 76 2 69 7.32e-15 68.2
Msa0041360 MtrunA17_Chr7g0220121 40.580 69 40 1 9 76 2 70 8.04e-15 68.6
Msa0041360 MtrunA17_Chr5g0412461 44.118 68 38 0 9 76 2 69 8.98e-15 68.2
Msa0041360 MtrunA17_Chr5g0420081 42.254 71 38 1 9 79 2 69 1.03e-14 68.2
Msa0041360 MtrunA17_Chr2g0308251 43.056 72 41 0 9 80 2 73 1.07e-14 64.7
Msa0041360 MtrunA17_Chr3g0134451 38.462 104 61 3 9 111 2 103 1.16e-14 68.6
Msa0041360 MtrunA17_Chr5g0420091 44.928 69 37 1 9 76 2 70 1.61e-14 67.0
Msa0041360 MtrunA17_Chr1g0164791 45.714 70 36 1 9 76 2 71 2.09e-14 67.0
Msa0041360 MtrunA17_Chr3g0125241 41.429 70 39 1 9 76 27 96 3.75e-14 65.9
Msa0041360 MtrunA17_Chr1g0159661 43.939 66 36 1 9 74 2 66 4.02e-14 65.5
Msa0041360 MtrunA17_Chr8g0377561 50.000 56 28 0 9 64 2 57 6.77e-14 62.8
Msa0041360 MtrunA17_Chr5g0427921 45.614 57 31 0 9 65 2 58 7.00e-14 62.0
Msa0041360 MtrunA17_Chr4g0061671 47.368 57 30 0 9 65 2 58 8.39e-14 64.7
Msa0041360 MtrunA17_Chr3g0122251 39.175 97 56 1 9 105 2 95 1.10e-13 65.5
Msa0041360 MtrunA17_Chr7g0246381 44.776 67 32 1 9 70 2 68 1.18e-13 61.6
Msa0041360 MtrunA17_Chr5g0425191 50.943 53 26 0 9 61 2 54 1.29e-13 62.4
Msa0041360 MtrunA17_Chr3g0142191 42.857 70 38 1 9 76 2 71 1.42e-13 64.7
Msa0041360 MtrunA17_Chr4g0044071 47.368 57 30 0 9 65 2 58 2.60e-13 62.0
Msa0041360 MtrunA17_Chr8g0345001 41.333 75 44 0 8 82 17 91 3.10e-13 63.2
Msa0041360 MtrunA17_Chr4g0025531 40.741 81 48 0 1 81 1 81 7.88e-12 60.1
Msa0041360 MtrunA17_Chr3g0093131 46.296 54 28 1 26 78 36 89 2.92e-11 58.2
Msa0041360 MtrunA17_Chr4g0018421 37.143 70 43 1 9 77 2 71 4.30e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041360 AT5G60440.1 62.500 128 46 1 5 130 3 130 1.40e-51 165
Msa0041360 AT4G36590.1 52.419 124 52 2 5 123 3 124 1.60e-36 125
Msa0041360 AT1G01530.1 56.604 106 44 1 4 109 2 105 2.63e-36 124
Msa0041360 AT2G24840.1 50.000 128 56 3 6 130 60 182 2.65e-35 122
Msa0041360 AT1G65360.1 48.246 114 57 1 5 118 3 114 2.40e-33 116
Msa0041360 AT2G34440.1 43.363 113 63 1 9 121 2 113 7.13e-28 101
Msa0041360 AT3G66656.1 42.017 119 65 1 9 123 2 120 1.16e-25 95.5
Msa0041360 AT1G72350.1 53.425 73 32 1 9 81 43 113 3.57e-22 87.8
Msa0041360 AT3G04100.1 33.913 115 73 1 2 113 7 121 1.14e-20 83.6
Msa0041360 AT4G22950.2 47.368 76 40 0 10 85 3 78 2.66e-19 79.0
Msa0041360 AT2G45660.2 50.000 68 34 0 10 77 3 70 7.11e-19 77.8
Msa0041360 AT4G22950.3 49.296 71 36 0 10 80 3 73 1.93e-18 77.8
Msa0041360 AT4G22950.1 49.296 71 36 0 10 80 3 73 1.93e-18 77.8
Msa0041360 AT2G45660.1 50.000 68 34 0 10 77 3 70 2.09e-18 77.8
Msa0041360 AT4G09960.2 45.238 84 45 1 9 91 2 85 2.57e-18 77.4
Msa0041360 AT4G09960.1 45.238 84 45 1 9 91 2 85 2.72e-18 77.8
Msa0041360 AT4G09960.6 45.238 84 45 1 9 91 3 86 2.95e-18 77.8
Msa0041360 AT2G45650.1 50.000 68 34 0 9 76 2 69 3.37e-18 77.8
Msa0041360 AT4G09960.5 45.238 84 45 1 9 91 12 95 4.24e-18 77.4
Msa0041360 AT4G09960.3 45.238 84 45 1 9 91 28 111 5.25e-18 77.4
Msa0041360 AT4G09960.4 45.238 84 45 1 9 91 97 180 1.03e-17 77.4
Msa0041360 AT5G51870.2 50.746 67 33 0 10 76 3 69 2.87e-17 73.9
Msa0041360 AT5G51870.1 50.746 67 33 0 10 76 3 69 3.00e-17 74.7
Msa0041360 AT5G51870.4 50.746 67 33 0 10 76 3 69 5.22e-17 74.3
Msa0041360 AT5G51870.5 47.222 72 38 0 5 76 21 92 6.01e-17 73.6
Msa0041360 AT5G51870.3 50.746 67 33 0 10 76 13 79 6.25e-17 74.3
Msa0041360 AT4G18960.1 38.318 107 56 1 2 108 11 107 7.75e-17 74.3
Msa0041360 AT5G23260.4 43.478 92 46 2 5 90 14 105 8.99e-17 74.3
Msa0041360 AT5G62165.14 46.269 67 36 0 10 76 3 69 9.13e-17 70.9
Msa0041360 AT5G23260.1 43.478 92 46 2 5 90 14 105 9.58e-17 74.3
Msa0041360 AT1G28460.1 34.694 98 64 0 5 102 4 101 1.26e-16 72.4
Msa0041360 AT3G57230.2 44.118 68 38 0 9 76 2 69 1.36e-16 71.6
Msa0041360 AT5G62165.17 46.269 67 36 0 10 76 3 69 1.38e-16 71.6
Msa0041360 AT5G62165.12 46.269 67 36 0 10 76 3 69 1.38e-16 71.6
Msa0041360 AT5G62165.11 46.269 67 36 0 10 76 3 69 1.38e-16 71.6
Msa0041360 AT5G23260.2 45.455 88 42 2 9 90 2 89 1.55e-16 73.6
Msa0041360 AT5G23260.3 45.455 88 42 2 9 90 2 89 1.66e-16 73.2
Msa0041360 AT5G62165.6 46.269 67 36 0 10 76 3 69 1.86e-16 71.2
Msa0041360 AT5G62165.9 46.269 67 36 0 10 76 3 69 1.86e-16 71.2
Msa0041360 AT5G62165.7 46.269 67 36 0 10 76 3 69 1.86e-16 71.2
Msa0041360 AT5G62165.8 46.269 67 36 0 10 76 3 69 1.86e-16 71.2
Msa0041360 AT5G62165.13 46.269 67 36 0 10 76 3 69 1.86e-16 71.2
Msa0041360 AT3G61120.1 48.529 68 35 0 9 76 2 69 1.93e-16 73.2
Msa0041360 AT4G37940.4 45.588 68 37 0 9 76 2 69 2.35e-16 72.4
Msa0041360 AT4G37940.1 45.588 68 37 0 9 76 2 69 2.37e-16 72.8
Msa0041360 AT2G42830.2 48.529 68 35 0 9 76 17 84 3.14e-16 72.8
Msa0041360 AT2G42830.1 48.529 68 35 0 9 76 17 84 3.19e-16 72.4
Msa0041360 AT4G37940.3 45.588 68 37 0 9 76 2 69 3.53e-16 71.2
Msa0041360 AT5G10140.2 47.826 69 35 1 9 76 2 70 3.76e-16 70.9
Msa0041360 AT5G51860.2 49.254 67 34 0 10 76 3 69 4.01e-16 71.6
Msa0041360 AT3G58780.1 47.887 71 37 0 6 76 14 84 4.20e-16 72.4
Msa0041360 AT3G57390.3 47.059 68 36 0 9 76 2 69 4.52e-16 72.0
Msa0041360 AT2G22540.3 47.059 68 36 0 9 76 2 69 4.65e-16 72.0
Msa0041360 AT2G22540.1 47.059 68 36 0 9 76 2 69 4.65e-16 72.0
Msa0041360 AT4G24540.1 47.059 68 36 0 9 76 2 69 4.75e-16 71.6
Msa0041360 AT5G62165.10 46.269 67 36 0 10 76 3 69 4.76e-16 71.2
Msa0041360 AT5G62165.4 46.269 67 36 0 10 76 3 69 4.76e-16 71.2
Msa0041360 AT3G58780.5 47.887 71 37 0 6 76 20 90 4.82e-16 72.0
Msa0041360 AT4G11880.2 45.833 72 38 1 10 80 3 74 4.92e-16 70.9
Msa0041360 AT4G11880.3 45.833 72 38 1 10 80 3 74 4.92e-16 70.9
Msa0041360 AT5G10140.3 47.826 69 35 1 9 76 2 70 5.22e-16 70.9
Msa0041360 AT5G51860.1 49.254 67 34 0 10 76 3 69 5.30e-16 71.2
Msa0041360 AT5G62165.3 46.269 67 36 0 10 76 3 69 5.43e-16 71.2
Msa0041360 AT5G62165.1 46.269 67 36 0 10 76 3 69 5.43e-16 71.2
Msa0041360 AT5G62165.2 46.269 67 36 0 10 76 3 69 5.43e-16 71.2
Msa0041360 AT5G13790.2 48.529 68 35 0 9 76 2 69 5.64e-16 72.4
Msa0041360 AT5G10140.4 47.826 69 35 1 9 76 2 70 5.68e-16 70.9
Msa0041360 AT5G13790.1 48.529 68 35 0 9 76 2 69 5.99e-16 72.0
Msa0041360 AT3G57230.1 44.118 68 38 0 9 76 2 69 6.48e-16 71.6
Msa0041360 AT3G57230.4 44.118 68 38 0 9 76 2 69 6.48e-16 71.6
Msa0041360 AT5G10140.1 47.826 69 35 1 9 76 2 70 6.81e-16 70.9
Msa0041360 AT3G58780.4 47.887 71 37 0 6 76 14 84 7.52e-16 72.0
Msa0041360 AT3G57390.1 47.059 68 36 0 9 76 2 69 8.82e-16 71.6
Msa0041360 AT3G30260.1 34.167 120 70 3 9 127 2 113 9.55e-16 71.2
Msa0041360 AT4G11880.4 45.833 72 38 1 10 80 3 74 1.06e-15 70.9
Msa0041360 AT4G11880.1 45.833 72 38 1 10 80 3 74 1.06e-15 70.9
Msa0041360 AT3G54340.1 44.286 70 37 1 9 76 2 71 1.11e-15 70.9
Msa0041360 AT1G77950.3 43.421 76 41 2 9 83 2 76 1.24e-15 71.2
Msa0041360 AT1G77950.2 43.421 76 41 2 9 83 2 76 1.24e-15 71.2
Msa0041360 AT1G77950.1 43.421 76 41 2 9 83 2 76 1.24e-15 71.2
Msa0041360 AT1G77950.4 43.421 76 41 2 9 83 2 76 1.24e-15 71.2
Msa0041360 AT2G22630.1 44.118 68 38 0 9 76 2 69 1.66e-15 70.5
Msa0041360 AT2G22630.2 44.118 68 38 0 9 76 2 69 1.66e-15 70.5
Msa0041360 AT5G60910.1 46.479 71 35 1 9 79 2 69 2.04e-15 70.5
Msa0041360 AT1G29962.1 40.541 74 44 0 5 78 4 77 2.59e-15 68.9
Msa0041360 AT1G17310.1 52.703 74 33 1 8 81 47 118 2.63e-15 69.7
Msa0041360 AT1G22130.1 34.286 105 68 1 9 112 2 106 2.80e-15 70.9
Msa0041360 AT1G69120.2 38.889 90 52 1 9 98 2 88 3.12e-15 69.7
Msa0041360 AT1G77980.1 45.070 71 38 1 9 78 2 72 3.30e-15 70.9
Msa0041360 AT1G17310.2 50.633 79 37 1 8 86 58 134 3.46e-15 69.3
Msa0041360 AT1G26310.1 44.928 69 37 1 9 76 2 70 4.58e-15 69.7
Msa0041360 AT5G20240.2 44.286 70 37 1 9 76 2 71 5.11e-15 67.4
Msa0041360 AT1G69120.1 38.889 90 52 1 9 98 2 88 5.52e-15 69.3
Msa0041360 AT5G20240.1 44.286 70 37 1 9 76 2 71 8.21e-15 68.2
Msa0041360 AT5G15800.1 46.377 69 36 1 9 76 2 70 1.08e-14 68.6
Msa0041360 AT5G15800.2 46.377 69 36 1 9 76 2 70 1.90e-14 68.2
Msa0041360 AT2G14210.1 43.478 69 38 1 9 76 2 70 2.84e-14 67.0
Msa0041360 AT2G14210.2 43.478 69 38 1 9 76 2 70 3.25e-14 67.0
Msa0041360 AT5G65050.2 43.478 69 38 1 9 76 2 70 4.21e-14 65.9
Msa0041360 AT2G03710.3 44.286 70 37 2 9 76 2 71 4.38e-14 65.9
Msa0041360 AT3G02310.2 44.928 69 37 1 9 76 2 70 5.41e-14 65.9
Msa0041360 AT3G58780.2 50.000 60 30 0 6 65 14 73 9.99e-14 65.9
Msa0041360 AT1G47760.1 31.405 121 67 3 9 129 2 106 1.04e-13 64.7
Msa0041360 AT2G22540.2 51.786 56 27 0 9 64 2 57 1.07e-13 65.5
Msa0041360 AT5G65050.3 43.478 69 38 1 9 76 2 70 1.13e-13 65.1
Msa0041360 AT5G65050.5 43.478 69 38 1 9 76 2 70 1.14e-13 64.7
Msa0041360 AT3G58780.3 50.000 60 30 0 6 65 14 73 1.29e-13 65.9
Msa0041360 AT5G65050.1 43.478 69 38 1 9 76 2 70 1.35e-13 64.3
Msa0041360 AT1G24260.2 39.175 97 56 1 9 105 2 95 1.66e-13 65.5
Msa0041360 AT2G03710.1 44.286 70 37 2 9 76 2 71 1.73e-13 65.5
Msa0041360 AT2G03710.2 44.286 70 37 2 9 76 2 71 1.73e-13 65.5
Msa0041360 AT1G24260.3 39.175 97 56 1 9 105 2 95 1.88e-13 65.1
Msa0041360 AT5G65060.3 43.478 69 38 1 9 76 2 70 1.93e-13 64.3
Msa0041360 AT1G24260.1 50.000 56 28 0 9 64 2 57 2.26e-13 65.1
Msa0041360 AT5G65060.2 43.478 69 38 1 9 76 2 70 2.96e-13 63.5
Msa0041360 AT1G71692.1 41.429 70 40 1 9 77 2 71 3.10e-13 63.9
Msa0041360 AT5G65060.1 43.478 69 38 1 9 76 2 70 3.38e-13 63.5
Msa0041360 AT3G02310.1 44.928 69 37 1 9 76 2 70 3.84e-13 64.3
Msa0041360 AT5G65070.4 39.130 69 41 1 9 76 2 70 6.87e-13 62.0
Msa0041360 AT5G65070.1 39.130 69 41 1 9 76 2 70 1.36e-12 62.0
Msa0041360 AT1G28450.1 35.135 74 48 0 5 78 4 77 1.85e-12 61.6
Msa0041360 AT5G65070.2 39.130 69 41 1 9 76 2 70 2.68e-12 61.6
Msa0041360 AT5G65070.5 39.130 69 41 1 9 76 2 70 3.61e-12 61.2
Msa0041360 AT4G37435.1 37.500 72 44 1 9 79 2 73 6.59e-12 60.1
Msa0041360 AT5G65070.3 43.860 57 32 0 9 65 2 58 1.56e-11 59.7

Find 23 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCACGGTACCATTGTTT+TGG 0.300796 1_1:+71681228 None:intergenic
TCTTCTCGTTGTCCAGTAGC+TGG 0.424175 1_1:+71681144 None:intergenic
CGTAGTGGGCTCTTCAAGAA+AGG 0.499918 1_1:-71681380 Msa0041360:CDS
GACTCAGATCAACCAGCTAC+TGG 0.507836 1_1:-71681156 Msa0041360:CDS
TGGCCAACCCAATGTGGATA+CGG 0.509185 1_1:-71681282 Msa0041360:CDS
TCTATGACCGTATCCACATT+GGG 0.514276 1_1:+71681275 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 1_1:+71681192 None:intergenic
ATCTATGACCGTATCCACAT+TGG 0.545676 1_1:+71681274 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1_1:-71681394 Msa0041360:CDS
AGCGACATGTGCACCACAGA+TGG 0.558797 1_1:+71681343 None:intergenic
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1_1:-71681481 None:intergenic
AATGAAAATACCTTCTCTCC+AGG 0.563686 1_1:+71681305 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1_1:-71681395 Msa0041360:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.584782 1_1:+71681184 None:intergenic
TGACCGTATCCACATTGGGT+TGG 0.608969 1_1:+71681279 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1_1:+71681381 None:intergenic
TTCATTTGGCCAACCCAATG+TGG 0.622502 1_1:-71681288 Msa0041360:CDS
GTGAGTCTCAATGAATTGCA+CGG 0.638107 1_1:+71681214 None:intergenic
TGTGCTTCAACCATGTCGAG+TGG 0.638522 1_1:-71681485 None:intergenic
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1_1:-71681239 Msa0041360:CDS
AGTGAGCTTTGTACCATCTG+TGG 0.652271 1_1:-71681356 Msa0041360:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1_1:-71681470 Msa0041360:CDS
GGACAACGAGAAGAAACGTG+CGG 0.746947 1_1:-71681135 Msa0041360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1_1:71681135-71681154 None:intergenic 20.0%
AATGAAAATACCTTCTCTCC+AGG + chr1_1:71681274-71681293 None:intergenic 35.0%
!!! GGAGAGAAGGTATTTTCATT+TGG - chr1_1:71681274-71681293 Msa0041360:CDS 35.0%
TCTATGACCGTATCCACATT+GGG + chr1_1:71681304-71681323 None:intergenic 40.0%
ATCTATGACCGTATCCACAT+TGG + chr1_1:71681305-71681324 None:intergenic 40.0%
! TTGCACGGTACCATTGTTTT+GGG + chr1_1:71681350-71681369 None:intergenic 40.0%
! ATTGCACGGTACCATTGTTT+TGG + chr1_1:71681351-71681370 None:intergenic 40.0%
GTGAGTCTCAATGAATTGCA+CGG + chr1_1:71681365-71681384 None:intergenic 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1_1:71681126-71681145 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1_1:71681198-71681217 None:intergenic 45.0%
! AGTGAGCTTTGTACCATCTG+TGG - chr1_1:71681220-71681239 Msa0041360:CDS 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG - chr1_1:71681261-71681280 Msa0041360:CDS 45.0%
TTCATTTGGCCAACCCAATG+TGG - chr1_1:71681288-71681307 Msa0041360:CDS 45.0%
!! TGCACGGTACCATTGTTTTG+GGG + chr1_1:71681349-71681368 None:intergenic 45.0%
!! CGTAGTGGGCTCTTCAAGAA+AGG - chr1_1:71681196-71681215 Msa0041360:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1_1:71681253-71681272 Msa0041360:CDS 50.0%
TGGCCAACCCAATGTGGATA+CGG - chr1_1:71681294-71681313 Msa0041360:CDS 50.0%
TGACCGTATCCACATTGGGT+TGG + chr1_1:71681300-71681319 None:intergenic 50.0%
!!! CGGTACCATTGTTTTGGGGT+GGG + chr1_1:71681345-71681364 None:intergenic 50.0%
!!! ACGGTACCATTGTTTTGGGG+TGG + chr1_1:71681346-71681365 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG - chr1_1:71681420-71681439 Msa0041360:CDS 50.0%
TCTTCTCGTTGTCCAGTAGC+TGG + chr1_1:71681435-71681454 None:intergenic 50.0%
GGACAACGAGAAGAAACGTG+CGG - chr1_1:71681441-71681460 Msa0041360:CDS 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1_1:71681106-71681125 Msa0041360:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1_1:71681181-71681200 Msa0041360:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1_1:71681182-71681201 Msa0041360:CDS 55.0%
AGCGACATGTGCACCACAGA+TGG + chr1_1:71681236-71681255 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1_1:71681337-71681356 Msa0041360:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG + chr1_1:71681395-71681414 None:intergenic 55.0%
GCTCGCGCACGTTGGCGCTA+CGG + chr1_1:71681387-71681406 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71681103 71681495 71681103 ID=Msa0041360;Name=Msa0041360
chr1_1 mRNA 71681103 71681495 71681103 ID=Msa0041360-mRNA-1;Parent=Msa0041360;Name=Msa0041360-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|130
chr1_1 exon 71681103 71681495 71681103 ID=Msa0041360-mRNA-1:exon:23751;Parent=Msa0041360-mRNA-1
chr1_1 CDS 71681103 71681495 71681103 ID=Msa0041360-mRNA-1:cds;Parent=Msa0041360-mRNA-1
Gene Sequence

>Msa0041360

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGGCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCGTGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAGCTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACATAG
Protein sequence

>Msa0041360

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKGSELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTVQFIETHRSANVRELNTQLTQINQLLDNEKKRAEELRHLRKAT*