AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041370 MtrunA17_Chr8g0355091 92.405 237 18 0 1 237 1 237 1.48e-163 451
Msa0041370 MtrunA17_Chr1g0206701 95.982 224 9 0 1 224 1 224 2.11e-161 446
Msa0041370 MtrunA17_Chr1g0206721 90.411 219 21 0 1 219 1 219 5.95e-149 414
Msa0041370 MtrunA17_Chr2g0292791 88.186 237 28 0 1 237 1 237 7.91e-148 411
Msa0041370 MtrunA17_Chr1g0149391 89.451 237 25 0 1 237 1 237 3.22e-146 407
Msa0041370 MtrunA17_Chr3g0099421 84.932 219 33 0 1 219 26 244 2.35e-140 393
Msa0041370 MtrunA17_Chr1g0206691 85.000 220 33 0 18 237 1 220 1.91e-138 387
Msa0041370 MtrunA17_Chr3g0099411 79.909 219 25 1 1 219 1 200 2.88e-123 348
Msa0041370 MtrunA17_Chr2g0300441 71.730 237 66 1 1 237 1 236 6.42e-121 343
Msa0041370 MtrunA17_Chr3g0089141 72.650 234 46 3 1 224 1 226 1.14e-116 332
Msa0041370 MtrunA17_Chr1g0208561 72.650 234 46 3 1 224 1 226 1.34e-115 330
Msa0041370 MtrunA17_Chr1g0206991 86.264 182 25 0 1 182 1 182 3.46e-115 327
Msa0041370 MtrunA17_Chr5g0422941 65.401 237 82 0 1 237 1 237 4.39e-114 326
Msa0041370 MtrunA17_Chr2g0325971 72.222 234 47 3 1 224 1 226 5.32e-114 325
Msa0041370 MtrunA17_Chr1g0188671 68.444 225 71 0 1 225 39 263 6.67e-113 325
Msa0041370 MtrunA17_Chr2g0317451 65.254 236 82 0 1 236 1 236 2.47e-112 322
Msa0041370 MtrunA17_Chr2g0317481 65.254 236 82 0 1 236 1 236 5.73e-112 321
Msa0041370 MtrunA17_Chr1g0187361 68.750 224 70 0 1 224 1 224 2.28e-111 319
Msa0041370 MtrunA17_Chr1g0208581 74.074 216 48 1 1 216 1 208 9.40e-111 317
Msa0041370 MtrunA17_Chr5g0422421 67.857 224 72 0 1 224 1 224 8.07e-110 315
Msa0041370 MtrunA17_Chr5g0419601 67.932 237 76 0 1 237 1 237 2.21e-109 314
Msa0041370 MtrunA17_Chr7g0238991 65.022 223 76 2 16 237 27 248 8.94e-98 285
Msa0041370 MtrunA17_Chr2g0300421 65.031 163 56 1 1 162 1 163 5.16e-67 204
Msa0041370 MtrunA17_Chr3g0085241 50.794 189 83 1 3 191 35 213 1.76e-64 201
Msa0041370 MtrunA17_Chr3g0119901 52.222 180 85 1 7 186 7 185 1.53e-63 197
Msa0041370 MtrunA17_Chr3g0089151 74.419 129 33 0 1 129 1 129 3.79e-63 193
Msa0041370 MtrunA17_Chr3g0111931 66.667 102 34 0 21 122 2 103 3.12e-44 144
Msa0041370 MtrunA17_Chr2g0333981 40.351 171 92 2 5 172 8 171 4.54e-41 138
Msa0041370 MtrunA17_Chr8g0379021 42.169 166 86 2 5 167 8 166 1.11e-40 137
Msa0041370 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 1.04e-34 122
Msa0041370 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.18e-33 114
Msa0041370 MtrunA17_Chr4g0071601 39.227 181 90 4 5 172 8 181 1.26e-32 117
Msa0041370 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 1.00e-30 108
Msa0041370 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 3.48e-25 94.7
Msa0041370 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 4.55e-24 94.7
Msa0041370 MtrunA17_Chr1g0169761 40.426 141 70 4 9 135 2 142 1.29e-23 93.6
Msa0041370 MtrunA17_Chr8g0376821 60.870 69 27 0 9 77 2 70 3.19e-23 92.4
Msa0041370 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 1.53e-22 91.3
Msa0041370 MtrunA17_Chr1g0175611 53.165 79 37 0 9 87 2 80 2.91e-22 89.7
Msa0041370 MtrunA17_Chr8g0357771 42.063 126 68 2 9 131 2 125 4.83e-22 89.4
Msa0041370 MtrunA17_Chr1g0180591 44.643 112 57 3 9 118 2 110 8.48e-22 89.0
Msa0041370 MtrunA17_Chr8g0356071 40.171 117 63 2 9 125 2 111 3.77e-21 86.7
Msa0041370 MtrunA17_Chr4g0052061 40.566 106 61 1 9 114 2 105 3.47e-19 81.3
Msa0041370 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.42e-19 82.8
Msa0041370 MtrunA17_Chr4g0049901 33.526 173 88 4 10 161 29 195 7.69e-19 82.4
Msa0041370 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 8.28e-19 82.4
Msa0041370 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.41e-18 79.7
Msa0041370 MtrunA17_Chr8g0351051 33.533 167 97 4 9 167 2 162 4.66e-18 80.5
Msa0041370 MtrunA17_Chr3g0134451 33.333 171 90 6 9 162 2 165 5.32e-18 81.3
Msa0041370 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 5.47e-18 78.6
Msa0041370 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.09e-17 79.0
Msa0041370 MtrunA17_Chr5g0412271 30.660 212 126 6 9 201 2 211 1.59e-17 78.6
Msa0041370 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.64e-17 77.8
Msa0041370 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 1.67e-17 79.0
Msa0041370 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.93e-17 76.3
Msa0041370 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 3.77e-17 77.8
Msa0041370 MtrunA17_Chr5g0412461 36.842 133 72 4 9 131 2 132 4.10e-17 77.4
Msa0041370 MtrunA17_Chr7g0220121 28.241 216 135 7 9 207 2 214 4.56e-17 77.8
Msa0041370 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 8.63e-17 76.6
Msa0041370 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 9.87e-17 76.6
Msa0041370 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.38e-16 76.6
Msa0041370 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.50e-16 75.9
Msa0041370 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 2.68e-16 75.1
Msa0041370 MtrunA17_Chr8g0345001 32.680 153 100 2 8 159 17 167 4.67e-16 73.6
Msa0041370 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 6.33e-16 73.9
Msa0041370 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 8.25e-16 74.3
Msa0041370 MtrunA17_Chr4g0020221 34.247 146 65 3 9 123 2 147 8.59e-16 74.3
Msa0041370 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 9.40e-16 73.9
Msa0041370 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.01e-15 73.9
Msa0041370 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.77e-15 73.2
Msa0041370 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.86e-15 73.2
Msa0041370 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 1.97e-15 69.3
Msa0041370 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.47e-15 72.8
Msa0041370 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.02e-15 69.3
Msa0041370 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 3.52e-15 68.6
Msa0041370 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 6.37e-15 71.2
Msa0041370 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 6.78e-15 70.9
Msa0041370 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 8.54e-15 68.6
Msa0041370 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.43e-14 67.4
Msa0041370 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.24e-14 70.1
Msa0041370 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.32e-14 69.7
Msa0041370 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.69e-14 68.9
Msa0041370 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 2.75e-14 68.9
Msa0041370 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 4.49e-14 65.5
Msa0041370 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 4.62e-14 65.1
Msa0041370 MtrunA17_Chr3g0122251 55.357 56 25 0 9 64 2 57 4.92e-14 69.3
Msa0041370 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.25e-13 67.8
Msa0041370 MtrunA17_Chr4g0025531 32.278 158 95 3 5 162 5 150 1.16e-12 65.5
Msa0041370 MtrunA17_Chr4g0060841 27.273 187 114 7 9 183 2 178 1.71e-12 65.9
Msa0041370 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 5.63e-12 61.2
Msa0041370 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.06e-11 62.0
Msa0041370 MtrunA17_Chr2g0302091 31.875 160 81 7 7 156 36 177 1.47e-11 61.6
Msa0041370 MtrunA17_Chr1g0166611 34.513 113 64 2 20 132 17 119 9.87e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041370 AT5G60440.1 53.723 188 80 3 5 189 3 186 2.54e-60 192
Msa0041370 AT2G24840.1 49.693 163 71 4 6 162 60 217 6.55e-44 149
Msa0041370 AT1G01530.1 40.476 210 102 4 4 192 2 209 1.80e-40 139
Msa0041370 AT1G65360.1 38.222 225 124 6 5 223 3 218 1.66e-39 136
Msa0041370 AT4G36590.1 45.732 164 79 4 5 160 3 164 2.50e-38 134
Msa0041370 AT2G34440.1 44.248 113 62 1 9 121 2 113 1.90e-26 101
Msa0041370 AT3G66656.1 41.221 131 72 2 9 134 2 132 9.19e-25 97.1
Msa0041370 AT3G04100.1 32.895 152 98 3 2 149 7 158 4.18e-24 95.9
Msa0041370 AT1G72350.1 35.374 147 62 3 9 155 43 156 8.79e-23 92.8
Msa0041370 AT1G28460.1 30.636 173 110 3 5 174 4 169 1.17e-19 83.6
Msa0041370 AT4G22950.2 49.351 77 39 0 10 86 3 79 2.93e-19 82.4
Msa0041370 AT4G09960.2 46.512 86 45 1 9 93 2 87 3.76e-19 83.2
Msa0041370 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.05e-19 83.2
Msa0041370 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.32e-19 83.2
Msa0041370 AT4G18960.1 28.689 244 136 8 5 226 15 242 5.18e-19 83.6
Msa0041370 AT4G09960.5 46.512 86 45 1 9 93 12 97 5.89e-19 83.2
Msa0041370 AT4G09960.3 46.512 86 45 1 9 93 28 113 7.91e-19 83.2
Msa0041370 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.09e-18 82.4
Msa0041370 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.23e-18 81.6
Msa0041370 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.23e-18 81.6
Msa0041370 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.25e-18 80.1
Msa0041370 AT1G29962.1 29.651 172 114 4 5 169 4 175 1.85e-18 80.5
Msa0041370 AT4G09960.4 46.512 86 45 1 9 93 97 182 2.73e-18 82.8
Msa0041370 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.44e-18 80.5
Msa0041370 AT2G22540.3 38.406 138 65 5 9 132 2 133 4.18e-18 80.9
Msa0041370 AT2G22540.1 38.406 138 65 5 9 132 2 133 4.18e-18 80.9
Msa0041370 AT4G24540.1 37.313 134 72 4 9 132 2 133 5.69e-18 80.1
Msa0041370 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.31e-17 77.4
Msa0041370 AT5G51870.1 53.731 67 31 0 10 76 3 69 2.47e-17 78.2
Msa0041370 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.96e-17 75.9
Msa0041370 AT5G51870.5 50.000 72 36 0 5 76 21 92 4.91e-17 77.0
Msa0041370 AT2G42830.1 47.368 76 40 0 1 76 9 84 5.16e-17 77.8
Msa0041370 AT2G42830.2 47.368 76 40 0 1 76 9 84 5.42e-17 77.8
Msa0041370 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.37e-17 77.0
Msa0041370 AT3G58780.1 50.704 71 35 0 6 76 14 84 6.45e-17 77.8
Msa0041370 AT3G58780.5 50.704 71 35 0 6 76 20 90 6.49e-17 77.8
Msa0041370 AT5G51870.3 53.731 67 31 0 10 76 13 79 6.75e-17 77.4
Msa0041370 AT5G62165.6 37.273 110 67 2 10 119 3 110 7.96e-17 75.5
Msa0041370 AT5G62165.9 37.273 110 67 2 10 119 3 110 7.96e-17 75.5
Msa0041370 AT5G62165.7 37.273 110 67 2 10 119 3 110 7.96e-17 75.5
Msa0041370 AT5G62165.8 37.273 110 67 2 10 119 3 110 7.96e-17 75.5
Msa0041370 AT5G62165.13 37.273 110 67 2 10 119 3 110 7.96e-17 75.5
Msa0041370 AT5G10140.2 50.725 69 33 1 9 76 2 70 7.97e-17 75.9
Msa0041370 AT3G61120.1 51.471 68 33 0 9 76 2 69 8.23e-17 77.4
Msa0041370 AT3G57390.3 50.000 68 34 0 9 76 2 69 8.78e-17 77.0
Msa0041370 AT4G37940.4 48.529 68 35 0 9 76 2 69 8.79e-17 76.6
Msa0041370 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.00e-16 73.9
Msa0041370 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.01e-16 76.6
Msa0041370 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.18e-16 75.5
Msa0041370 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.19e-16 75.5
Msa0041370 AT5G62165.17 37.273 110 67 2 10 119 3 110 1.22e-16 75.1
Msa0041370 AT5G62165.12 37.273 110 67 2 10 119 3 110 1.22e-16 75.1
Msa0041370 AT5G62165.11 37.273 110 67 2 10 119 3 110 1.22e-16 75.1
Msa0041370 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.23e-16 77.4
Msa0041370 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa0041370 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa0041370 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa0041370 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.24e-16 77.0
Msa0041370 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.43e-16 75.9
Msa0041370 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.47e-16 76.6
Msa0041370 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.47e-16 76.6
Msa0041370 AT1G77980.1 49.296 71 35 1 9 78 2 72 1.52e-16 77.8
Msa0041370 AT3G54340.1 30.128 156 85 3 9 162 2 135 1.57e-16 76.3
Msa0041370 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.60e-16 75.5
Msa0041370 AT4G11880.2 31.977 172 74 6 10 139 3 173 1.93e-16 75.1
Msa0041370 AT4G11880.3 31.977 172 74 6 10 139 3 173 1.93e-16 75.1
Msa0041370 AT3G57390.1 50.000 68 34 0 9 76 2 69 1.95e-16 76.6
Msa0041370 AT5G13790.2 51.471 68 33 0 9 76 2 69 2.27e-16 76.6
Msa0041370 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.61e-16 76.3
Msa0041370 AT5G51860.2 39.806 103 62 0 10 112 3 105 3.46e-16 74.7
Msa0041370 AT2G22630.1 47.059 68 36 0 9 76 2 69 3.89e-16 75.1
Msa0041370 AT2G22630.2 47.059 68 36 0 9 76 2 69 3.89e-16 75.1
Msa0041370 AT1G69120.2 43.373 83 44 1 9 91 2 81 3.93e-16 75.1
Msa0041370 AT5G62165.10 37.273 110 67 2 10 119 3 110 4.17e-16 74.3
Msa0041370 AT5G62165.4 37.273 110 67 2 10 119 3 110 4.17e-16 74.3
Msa0041370 AT5G51860.1 39.806 103 62 0 10 112 3 105 4.70e-16 74.7
Msa0041370 AT5G62165.3 37.273 110 67 2 10 119 3 110 5.33e-16 74.3
Msa0041370 AT5G62165.1 37.273 110 67 2 10 119 3 110 5.33e-16 74.3
Msa0041370 AT5G62165.2 37.273 110 67 2 10 119 3 110 5.33e-16 74.3
Msa0041370 AT1G22130.1 47.887 71 36 1 9 78 2 72 5.87e-16 76.3
Msa0041370 AT5G60910.1 49.296 71 33 1 9 79 2 69 6.51e-16 74.7
Msa0041370 AT4G11880.4 48.611 72 36 1 10 80 3 74 8.73e-16 73.9
Msa0041370 AT4G11880.1 48.611 72 36 1 10 80 3 74 8.73e-16 73.9
Msa0041370 AT1G69120.1 43.373 83 44 1 9 91 2 81 9.80e-16 74.7
Msa0041370 AT1G26310.1 47.826 69 35 1 9 76 2 70 9.86e-16 74.7
Msa0041370 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.16e-15 74.3
Msa0041370 AT2G22540.2 37.681 138 61 6 9 132 2 128 1.27e-15 73.9
Msa0041370 AT5G23260.1 44.330 97 46 3 2 90 9 105 1.75e-15 73.9
Msa0041370 AT5G23260.4 44.330 97 46 3 2 90 9 105 1.79e-15 73.9
Msa0041370 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.61e-15 73.2
Msa0041370 AT5G20240.2 47.143 70 35 1 9 76 2 71 2.64e-15 71.2
Msa0041370 AT1G28450.1 29.371 143 95 3 5 141 4 146 2.72e-15 72.0
Msa0041370 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.39e-15 72.8
Msa0041370 AT5G23260.2 45.455 88 42 2 9 90 2 89 3.50e-15 73.2
Msa0041370 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.35e-15 72.8
Msa0041370 AT5G20240.1 47.143 70 35 1 9 76 2 71 4.76e-15 72.0
Msa0041370 AT1G17310.1 51.899 79 36 1 8 86 47 123 5.93e-15 71.6
Msa0041370 AT2G14210.1 46.377 69 36 1 9 76 2 70 6.81e-15 72.0
Msa0041370 AT1G17310.2 51.899 79 36 1 8 86 58 134 7.55e-15 71.6
Msa0041370 AT2G14210.2 46.377 69 36 1 9 76 2 70 9.45e-15 71.6
Msa0041370 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.77e-14 69.7
Msa0041370 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.82e-14 70.9
Msa0041370 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.97e-14 70.1
Msa0041370 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.43e-14 70.9
Msa0041370 AT5G65050.5 46.377 69 36 1 9 76 2 70 3.20e-14 68.9
Msa0041370 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.41e-14 69.3
Msa0041370 AT5G65050.1 46.377 69 36 1 9 76 2 70 3.67e-14 68.9
Msa0041370 AT2G03710.3 47.143 70 35 2 9 76 2 71 3.75e-14 68.9
Msa0041370 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.60e-14 69.7
Msa0041370 AT5G65060.2 46.377 69 36 1 9 76 2 70 6.39e-14 68.2
Msa0041370 AT5G65060.3 46.377 69 36 1 9 76 2 70 6.43e-14 68.6
Msa0041370 AT2G03710.1 47.143 70 35 2 9 76 2 71 7.10e-14 69.3
Msa0041370 AT2G03710.2 47.143 70 35 2 9 76 2 71 7.53e-14 69.3
Msa0041370 AT5G65060.1 46.377 69 36 1 9 76 2 70 8.25e-14 68.2
Msa0041370 AT1G24260.3 53.571 56 26 0 9 64 2 57 8.84e-14 68.9
Msa0041370 AT1G24260.1 53.571 56 26 0 9 64 2 57 9.25e-14 68.9
Msa0041370 AT1G24260.2 53.571 56 26 0 9 64 2 57 9.45e-14 68.9
Msa0041370 AT1G47760.1 34.127 126 66 4 9 131 2 113 1.04e-13 67.8
Msa0041370 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.25e-13 68.2
Msa0041370 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.88e-13 65.5
Msa0041370 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.61e-13 65.9
Msa0041370 AT5G65070.5 42.029 69 39 1 9 76 2 70 9.79e-13 65.5
Msa0041370 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.02e-12 65.9
Msa0041370 AT1G18750.4 26.344 186 118 6 9 177 2 185 2.64e-12 65.9
Msa0041370 AT1G18750.1 26.344 186 118 6 9 177 2 185 3.12e-12 65.9
Msa0041370 AT5G65070.3 47.368 57 30 0 9 65 2 58 4.85e-12 63.9
Msa0041370 AT1G69540.1 32.727 110 66 3 9 117 2 104 1.36e-11 63.5
Msa0041370 AT1G69540.2 32.727 110 66 3 9 117 2 104 1.58e-11 63.5
Msa0041370 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.72e-11 61.6
Msa0041370 AT1G18750.3 37.333 75 45 1 9 81 2 76 3.91e-11 62.4
Msa0041370 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.02e-11 58.9
Msa0041370 AT5G65080.3 42.029 69 39 1 9 76 9 77 5.01e-11 60.5
Msa0041370 AT2G03060.2 39.286 84 48 3 9 90 2 84 6.06e-11 62.0
Msa0041370 AT2G03060.3 39.286 84 48 3 9 90 2 84 6.11e-11 62.0
Msa0041370 AT2G03060.7 39.286 84 48 3 9 90 2 84 6.11e-11 62.0
Msa0041370 AT2G03060.1 39.286 84 48 3 9 90 2 84 6.11e-11 62.0
Msa0041370 AT5G65080.2 43.548 62 35 0 1 62 1 62 7.67e-11 60.1
Msa0041370 AT1G46408.1 36.134 119 67 4 10 119 5 123 8.02e-11 60.8

Find 53 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1_1:+71685945 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1_1:-71686131 Msa0041370:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 1_1:-71686210 Msa0041370:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1_1:+71686288 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1_1:-71685894 Msa0041370:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1_1:-71686039 Msa0041370:CDS
GAGGAGACTAAGAAACTTGT+TGG 0.386198 1_1:-71686068 Msa0041370:CDS
TTGTTGGACATCATGCTGAT+AGG 0.402994 1_1:-71686052 Msa0041370:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1_1:+71685833 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1_1:-71685880 Msa0041370:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1_1:-71686121 Msa0041370:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 1_1:+71685955 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1_1:-71686130 Msa0041370:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1_1:-71686120 Msa0041370:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 1_1:+71686204 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1_1:-71686151 Msa0041370:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1_1:-71685879 Msa0041370:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 1_1:+71686119 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1_1:+71686244 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 1_1:+71685936 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 1_1:-71686216 Msa0041370:CDS
GTCTATGACCGTATCAACAT+TGG 0.509296 1_1:+71686334 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 1_1:+71686418 None:intergenic
GCTCGCGCACATTGGCGCTA+AGG 0.520702 1_1:+71686252 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1_1:+71686118 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1_1:+71685897 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1_1:+71686335 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1_1:-71686342 Msa0041370:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1_1:-71686454 Msa0041370:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1_1:-71686541 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1_1:+71686312 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 1_1:+71686145 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1_1:-71686455 Msa0041370:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1_1:+71686365 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1_1:-71686171 Msa0041370:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 1_1:+71686339 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1_1:+71686021 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1_1:+71686441 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 1_1:+71685960 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 1_1:-71685878 Msa0041370:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 1_1:-71686416 Msa0041370:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 1_1:-71686545 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1_1:+71685836 None:intergenic
GTGAGCCTCAATGAATTGCA+TGG 0.635390 1_1:+71686274 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1_1:-71686038 Msa0041370:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1_1:-71686279 Msa0041370:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1_1:-71686299 Msa0041370:CDS
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1_1:+71685939 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1_1:+71685885 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1_1:+71685837 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1_1:-71685876 Msa0041370:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1_1:-71686530 Msa0041370:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1_1:-71685877 Msa0041370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1_1:71685874-71685893 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1_1:71686281-71686300 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1_1:71686282-71686301 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1_1:71686279-71686298 Msa0041370:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1_1:71686285-71686304 Msa0041370:CDS 25.0%
! AAAAATTGAAAGGTTTGAGT+AGG + chr1_1:71686367-71686386 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - chr1_1:71686367-71686386 Msa0041370:CDS 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + chr1_1:71686377-71686396 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - chr1_1:71686376-71686395 Msa0041370:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1_1:71686288-71686307 Msa0041370:CDS 30.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - chr1_1:71686370-71686389 Msa0041370:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + chr1_1:71686043-71686062 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1_1:71686089-71686108 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1_1:71686090-71686109 None:intergenic 35.0%
! GTTGGAAACATTTGAGTTTG+CGG + chr1_1:71686442-71686461 None:intergenic 35.0%
! GGATTCTGAAAAAACTGTGT+TGG + chr1_1:71686460-71686479 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - chr1_1:71686495-71686514 Msa0041370:CDS 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - chr1_1:71686496-71686515 Msa0041370:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1_1:71686013-71686032 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1_1:71686013-71686032 Msa0041370:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + chr1_1:71686044-71686063 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1_1:71686088-71686107 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1_1:71686096-71686115 Msa0041370:CDS 40.0%
GAGGAGACTAAGAAACTTGT+TGG - chr1_1:71686307-71686326 Msa0041370:CDS 40.0%
TTGTTGGACATCATGCTGAT+AGG - chr1_1:71686323-71686342 Msa0041370:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1_1:71686433-71686452 None:intergenic 40.0%
AACAAGTGAGGTTGCAACAT+AGG + chr1_1:71686481-71686500 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - chr1_1:71686481-71686500 Msa0041370:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + chr1_1:71686493-71686512 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - chr1_1:71686497-71686516 Msa0041370:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1_1:71685865-71685884 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1_1:71685937-71685956 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1_1:71685993-71686012 Msa0041370:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1_1:71685994-71686013 Msa0041370:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1_1:71686033-71686052 Msa0041370:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1_1:71686039-71686058 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1_1:71686084-71686103 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1_1:71686085-71686104 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1_1:71686104-71686123 None:intergenic 45.0%
GATCAACCAGCTACTGGATA+TGG - chr1_1:71686165-71686184 Msa0041370:CDS 45.0%
TCTTCTCCATATCCAGTAGC+TGG + chr1_1:71686174-71686193 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1_1:71686255-71686274 Msa0041370:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG - chr1_1:71686336-71686355 Msa0041370:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - chr1_1:71686337-71686356 Msa0041370:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + chr1_1:71686418-71686437 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + chr1_1:71686439-71686458 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - chr1_1:71686498-71686517 Msa0041370:CDS 45.0%
! TTTGGCTTCAACAATACGGG+GGG - chr1_1:71686499-71686518 Msa0041370:CDS 45.0%
AGTGAGCTTTGCACTCTCTG+CGG - chr1_1:71685959-71685978 Msa0041370:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1_1:71685992-71686011 Msa0041370:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1_1:71686000-71686019 Msa0041370:CDS 50.0%
GTGGGACTCGAGAGAGATAA+CGG + chr1_1:71686066-71686085 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1_1:71686134-71686153 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG - chr1_1:71686159-71686178 Msa0041370:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - chr1_1:71686228-71686247 Msa0041370:CDS 50.0%
! AGCCCACCAAAACTGACTCT+CGG + chr1_1:71686233-71686252 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1_1:71686254-71686273 Msa0041370:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1_1:71686259-71686278 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1_1:71686260-71686279 None:intergenic 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG + chr1_1:71686423-71686442 None:intergenic 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1_1:71685845-71685864 Msa0041370:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1_1:71685920-71685939 Msa0041370:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1_1:71685921-71685940 Msa0041370:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG + chr1_1:71685960-71685979 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1_1:71686076-71686095 Msa0041370:CDS 55.0%
AGAGCTGAGCAACTTGCGCA+AGG - chr1_1:71686204-71686223 Msa0041370:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - chr1_1:71686224-71686243 Msa0041370:CDS 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - chr1_1:71686227-71686246 Msa0041370:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - chr1_1:71686232-71686251 Msa0041370:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + chr1_1:71686357-71686376 None:intergenic 55.0%
GCTTCAACAATACGGGGGGA+GGG - chr1_1:71686503-71686522 Msa0041370:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - chr1_1:71686504-71686523 Msa0041370:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - chr1_1:71686505-71686524 Msa0041370:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG - chr1_1:71686502-71686521 Msa0041370:CDS 60.0%
GCTCGCGCACATTGGCGCTA+AGG + chr1_1:71686126-71686145 None:intergenic 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1_1:71686244-71686263 Msa0041370:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1_1:71686245-71686264 Msa0041370:CDS 65.0%
AACAATACGGGGGGAGGGGG+TGG - chr1_1:71686508-71686527 Msa0041370:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - chr1_1:71686514-71686533 Msa0041370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71685842 71686555 71685842 ID=Msa0041370;Name=Msa0041370
chr1_1 mRNA 71685842 71686555 71685842 ID=Msa0041370-mRNA-1;Parent=Msa0041370;Name=Msa0041370-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|237
chr1_1 exon 71685842 71686555 71685842 ID=Msa0041370-mRNA-1:exon:23750;Parent=Msa0041370-mRNA-1
chr1_1 CDS 71685842 71686555 71685842 ID=Msa0041370-mRNA-1:cds;Parent=Msa0041370-mRNA-1
Gene Sequence

>Msa0041370

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCTTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>Msa0041370

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHLSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALEETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*