Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041700 | sp|Q7XHI9|BH084_ARATH | 36.932 | 352 | 151 | 12 | 10 | 324 | 6 | 323 | 1.59e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0041700 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041700 | MtrunA17_Chr1g0207301 | 94.242 | 330 | 19 | 0 | 1 | 330 | 51 | 380 | 0.0 | 638 |
| Msa0041700 | MtrunA17_Chr5g0393721 | 49.405 | 336 | 126 | 9 | 9 | 329 | 9 | 315 | 4.33e-85 | 259 |
| Msa0041700 | MtrunA17_Chr1g0207311 | 41.667 | 324 | 147 | 7 | 1 | 324 | 1 | 282 | 4.68e-58 | 189 |
| Msa0041700 | MtrunA17_Chr3g0134741 | 52.147 | 163 | 77 | 1 | 161 | 323 | 153 | 314 | 5.13e-48 | 164 |
| Msa0041700 | MtrunA17_Chr1g0152651 | 50.617 | 162 | 70 | 2 | 152 | 313 | 198 | 349 | 1.01e-39 | 143 |
| Msa0041700 | MtrunA17_Chr5g0435021 | 62.857 | 70 | 26 | 0 | 237 | 306 | 217 | 286 | 4.87e-24 | 100 |
| Msa0041700 | MtrunA17_Chr8g0384141 | 53.623 | 69 | 32 | 0 | 234 | 302 | 110 | 178 | 2.47e-18 | 83.2 |
| Msa0041700 | MtrunA17_Chr4g0074161 | 43.333 | 90 | 49 | 1 | 214 | 301 | 180 | 269 | 5.62e-17 | 81.3 |
| Msa0041700 | MtrunA17_Chr3g0134001 | 49.254 | 67 | 34 | 0 | 234 | 300 | 167 | 233 | 6.91e-17 | 79.3 |
| Msa0041700 | MtrunA17_Chr7g0243041 | 58.182 | 55 | 23 | 0 | 245 | 299 | 33 | 87 | 2.48e-16 | 75.1 |
| Msa0041700 | MtrunA17_Chr1g0190731 | 47.059 | 68 | 36 | 0 | 234 | 301 | 189 | 256 | 3.67e-14 | 72.4 |
| Msa0041700 | MtrunA17_Chr1g0153241 | 43.548 | 62 | 35 | 0 | 254 | 315 | 101 | 162 | 1.14e-12 | 67.0 |
| Msa0041700 | MtrunA17_Chr5g0402031 | 42.105 | 76 | 44 | 0 | 254 | 329 | 121 | 196 | 2.19e-12 | 67.0 |
| Msa0041700 | MtrunA17_Chr1g0193321 | 50.000 | 48 | 24 | 0 | 254 | 301 | 478 | 525 | 7.57e-12 | 66.2 |
| Msa0041700 | MtrunA17_Chr3g0095391 | 31.667 | 120 | 60 | 5 | 224 | 326 | 288 | 402 | 2.25e-11 | 64.7 |
| Msa0041700 | MtrunA17_Chr2g0330641 | 39.200 | 125 | 69 | 3 | 180 | 300 | 231 | 352 | 2.91e-11 | 63.9 |
| Msa0041700 | MtrunA17_Chr1g0182791 | 37.349 | 83 | 45 | 1 | 226 | 301 | 298 | 380 | 5.26e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041700 | AT2G14760.1 | 36.932 | 352 | 151 | 12 | 10 | 324 | 6 | 323 | 1.62e-55 | 184 |
| Msa0041700 | AT2G14760.3 | 35.616 | 365 | 151 | 13 | 10 | 324 | 6 | 336 | 7.02e-52 | 175 |
| Msa0041700 | AT4G33880.1 | 77.174 | 92 | 21 | 0 | 229 | 320 | 257 | 348 | 2.30e-45 | 158 |
| Msa0041700 | AT5G43175.1 | 54.545 | 154 | 55 | 2 | 187 | 325 | 66 | 219 | 6.87e-45 | 153 |
| Msa0041700 | AT1G27740.1 | 53.642 | 151 | 52 | 3 | 176 | 325 | 121 | 254 | 2.14e-44 | 153 |
| Msa0041700 | AT5G37800.1 | 61.039 | 77 | 27 | 1 | 230 | 306 | 196 | 269 | 1.15e-24 | 102 |
| Msa0041700 | AT1G66470.1 | 54.839 | 93 | 41 | 1 | 214 | 306 | 172 | 263 | 1.39e-24 | 101 |
| Msa0041700 | AT4G30980.1 | 45.783 | 83 | 45 | 0 | 219 | 301 | 111 | 193 | 1.58e-17 | 82.0 |
| Msa0041700 | AT4G30980.2 | 45.783 | 83 | 45 | 0 | 219 | 301 | 159 | 241 | 1.80e-17 | 82.8 |
| Msa0041700 | AT2G24260.2 | 53.846 | 65 | 30 | 0 | 237 | 301 | 34 | 98 | 3.45e-17 | 80.1 |
| Msa0041700 | AT2G24260.1 | 53.846 | 65 | 30 | 0 | 237 | 301 | 137 | 201 | 8.32e-17 | 80.5 |
| Msa0041700 | AT5G01305.1 | 48.649 | 74 | 33 | 1 | 237 | 305 | 36 | 109 | 2.17e-16 | 76.3 |
| Msa0041700 | AT3G21330.1 | 39.394 | 99 | 59 | 1 | 202 | 300 | 234 | 331 | 3.10e-16 | 79.3 |
| Msa0041700 | AT5G58010.1 | 47.143 | 70 | 37 | 0 | 232 | 301 | 93 | 162 | 8.34e-16 | 77.0 |
| Msa0041700 | AT4G00120.1 | 51.852 | 54 | 26 | 0 | 247 | 300 | 121 | 174 | 2.95e-15 | 73.6 |
| Msa0041700 | AT2G20180.7 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.44e-12 | 67.0 |
| Msa0041700 | AT2G20180.1 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.44e-12 | 67.0 |
| Msa0041700 | AT2G20180.5 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.44e-12 | 67.0 |
| Msa0041700 | AT4G36930.1 | 43.077 | 65 | 37 | 0 | 254 | 318 | 207 | 271 | 4.80e-12 | 66.6 |
| Msa0041700 | AT1G09530.3 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT1G09530.2 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT1G09530.5 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT1G09530.1 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT1G09530.4 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT1G09530.6 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.40e-12 | 66.6 |
| Msa0041700 | AT2G20180.4 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 8.01e-12 | 66.2 |
| Msa0041700 | AT2G20180.6 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 8.01e-12 | 66.2 |
| Msa0041700 | AT2G20180.2 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 8.01e-12 | 66.2 |
| Msa0041700 | AT2G20180.3 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 8.01e-12 | 66.2 |
| Msa0041700 | AT5G67110.1 | 42.857 | 77 | 28 | 3 | 254 | 330 | 103 | 163 | 6.99e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACAGATTTGAAGTTAA+AGG | 0.203807 | 1_1:-72122592 | Msa0041700:CDS |
| TCAAATCTGTTGAATCATTC+TGG | 0.235168 | 1_1:+72122601 | None:intergenic |
| CATTAGGGACTAGGCTTTGT+AGG | 0.283545 | 1_1:+72122344 | None:intergenic |
| CTTGGAAGTTATTATGTAAC+TGG | 0.304996 | 1_1:+72123468 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | 1_1:+72121991 | None:intergenic |
| CAAGTTTCTGAGCACCATTA+TGG | 0.327811 | 1_1:-72123449 | Msa0041700:CDS |
| TCAACAGATTTGAAGTTAAA+GGG | 0.332099 | 1_1:-72122591 | Msa0041700:CDS |
| CTAAATTGAAATTTCCATAA+TGG | 0.336286 | 1_1:+72123435 | None:intergenic |
| GAAAACACTTCTGAAGAGTT+TGG | 0.345438 | 1_1:-72123149 | Msa0041700:CDS |
| CCTTGGTTCCATTAGGGACT+AGG | 0.345834 | 1_1:+72122335 | None:intergenic |
| CATAATGGTGCTCAGAAACT+TGG | 0.346093 | 1_1:+72123450 | None:intergenic |
| AAAGCTACCTTGGTTCCATT+AGG | 0.376583 | 1_1:+72122328 | None:intergenic |
| GGATGAAAGTCATGATCTTC+AGG | 0.377305 | 1_1:-72122700 | Msa0041700:CDS |
| ACAAGAGAAATGTGAAATCT+AGG | 0.391427 | 1_1:-72122761 | Msa0041700:CDS |
| AAGCTACCTTGGTTCCATTA+GGG | 0.399329 | 1_1:+72122329 | None:intergenic |
| GTTAGCACTTATAGTGTTCA+AGG | 0.403437 | 1_1:-72123194 | Msa0041700:CDS |
| CTACAAAGCCTAGTCCCTAA+TGG | 0.408904 | 1_1:-72122343 | Msa0041700:CDS |
| GCTATATATCTATGGTAGTT+CGG | 0.420297 | 1_1:+72121939 | None:intergenic |
| TATATTGCTAGTATCAGAAA+TGG | 0.424213 | 1_1:+72123289 | None:intergenic |
| AGAGTTTGGTCAAGATGTTT+CGG | 0.440700 | 1_1:-72123135 | Msa0041700:CDS |
| GAAGAATGGAGTTCTCTTAG+TGG | 0.449677 | 1_1:-72123524 | Msa0041700:CDS |
| TATATCTATGGTAGTTCGGT+TGG | 0.463306 | 1_1:+72121943 | None:intergenic |
| ACTATTGTGGATTCATGTCC+TGG | 0.472252 | 1_1:+72123392 | None:intergenic |
| TAGAAATTCCATCTACATCA+TGG | 0.473913 | 1_1:-72123415 | Msa0041700:CDS |
| TGTCCTGGCCATGATGTAGA+TGG | 0.481256 | 1_1:+72123407 | None:intergenic |
| GGCATTCATGTAGCTAATGT+TGG | 0.483860 | 1_1:+72123220 | None:intergenic |
| AAGGGAAAATCAAAATGTAA+TGG | 0.488727 | 1_1:-72122573 | Msa0041700:CDS |
| GCTATTCATGCTGACTATTG+TGG | 0.502781 | 1_1:+72123379 | None:intergenic |
| ATATCTATGGTAGTTCGGTT+GGG | 0.502830 | 1_1:+72121944 | None:intergenic |
| GCTTACAATGGAATGAACAT+TGG | 0.525606 | 1_1:-72121985 | Msa0041700:CDS |
| TTCTGAGCTCTGATGATCAC+TGG | 0.538373 | 1_1:-72122023 | Msa0041700:CDS |
| GTTCGGTTGGGATAATGTTG+AGG | 0.541601 | 1_1:+72121956 | None:intergenic |
| AAGATCTAGGAGCTCAATGA+AGG | 0.546306 | 1_1:-72123066 | Msa0041700:intron |
| TGTTTCGGAATCCGCAAAAG+AGG | 0.548289 | 1_1:-72123120 | Msa0041700:CDS |
| GAAGAGAAAGAATAAATGAA+AGG | 0.551355 | 1_1:-72122375 | Msa0041700:CDS |
| GTGAGCAAAGTTGTGAAGAA+TGG | 0.553461 | 1_1:-72123538 | Msa0041700:CDS |
| ATTCCATCTACATCATGGCC+AGG | 0.561187 | 1_1:-72123410 | Msa0041700:CDS |
| TCAGGAGCAGAATTTGAGCT+CGG | 0.588142 | 1_1:-72122682 | Msa0041700:CDS |
| AATATATTTCATAATACAAG+TGG | 0.588869 | 1_1:-72123272 | Msa0041700:CDS |
| GCTTTAAAGAAGCTAAATGC+AGG | 0.589797 | 1_1:-72122642 | Msa0041700:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | 1_1:-72122225 | Msa0041700:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1_1:-72121997 | Msa0041700:CDS |
| GGAAAATCAAAATGTAATGG+AGG | 0.608687 | 1_1:-72122570 | Msa0041700:CDS |
| TTGCACAGCTTCCTCAAGCA+TGG | 0.610000 | 1_1:+72122214 | None:intergenic |
| GTTCAAAAGCAACGCTGACG+AGG | 0.610341 | 1_1:-72122721 | Msa0041700:CDS |
| ATCTAGGAAGAAACCAAAGT+GGG | 0.612043 | 1_1:-72122745 | Msa0041700:CDS |
| ATAGACACCTTGTGGATCAG+AGG | 0.616647 | 1_1:+72122542 | None:intergenic |
| GTTTCGGAATCCGCAAAAGA+GGG | 0.625031 | 1_1:-72123119 | Msa0041700:CDS |
| AGAGGGTATCAAGAACAACC+TGG | 0.629194 | 1_1:-72123102 | Msa0041700:CDS |
| AACACTATAAGTGCTAACAT+TGG | 0.631216 | 1_1:+72123199 | None:intergenic |
| CCTAGTCCCTAATGGAACCA+AGG | 0.646129 | 1_1:-72122335 | Msa0041700:intron |
| GGTTCTGCCTCTGATCCACA+AGG | 0.648330 | 1_1:-72122549 | Msa0041700:CDS |
| GGAGCAGAATTTGAGCTCGG+AGG | 0.653936 | 1_1:-72122679 | Msa0041700:CDS |
| AATCTAGGAAGAAACCAAAG+TGG | 0.682276 | 1_1:-72122746 | Msa0041700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1_1:72123406-72123425 | None:intergenic | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1_1:72123406-72123425 | None:intergenic | 10.0% |
| !! | AATATATTTCATAATACAAG+TGG | - | chr1_1:72122224-72122243 | Msa0041700:CDS | 15.0% |
| !!! | TTCAAATACTTTAAGATAAT+TGG | - | chr1_1:72123202-72123221 | Msa0041700:CDS | 15.0% |
| !!! | TTTTCTTACTCATTAATTAT+AGG | - | chr1_1:72123247-72123266 | Msa0041700:CDS | 15.0% |
| !!! | TATGAATCCAAATTTTAATT+CGG | - | chr1_1:72123367-72123386 | Msa0041700:CDS | 15.0% |
| !! | AATATATTTCATAATACAAG+TGG | - | chr1_1:72122224-72122243 | Msa0041700:CDS | 15.0% |
| !!! | TTCAAATACTTTAAGATAAT+TGG | - | chr1_1:72123202-72123221 | Msa0041700:CDS | 15.0% |
| !!! | TTTTCTTACTCATTAATTAT+AGG | - | chr1_1:72123247-72123266 | Msa0041700:CDS | 15.0% |
| !!! | TATGAATCCAAATTTTAATT+CGG | - | chr1_1:72123367-72123386 | Msa0041700:CDS | 15.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | + | chr1_1:72122064-72122083 | None:intergenic | 20.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1_1:72122547-72122566 | None:intergenic | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1_1:72122559-72122578 | Msa0041700:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1_1:72122703-72122722 | Msa0041700:CDS | 20.0% |
| !! | TAAAATTTGGATTCATAGTA+AGG | + | chr1_1:72123364-72123383 | None:intergenic | 20.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | + | chr1_1:72122064-72122083 | None:intergenic | 20.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1_1:72122547-72122566 | None:intergenic | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1_1:72122559-72122578 | Msa0041700:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1_1:72122703-72122722 | Msa0041700:CDS | 20.0% |
| !! | TAAAATTTGGATTCATAGTA+AGG | + | chr1_1:72123364-72123383 | None:intergenic | 20.0% |
| ! | TATATTGCTAGTATCAGAAA+TGG | + | chr1_1:72122210-72122229 | None:intergenic | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1_1:72122417-72122436 | Msa0041700:intron | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | - | chr1_1:72122497-72122516 | Msa0041700:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1_1:72122660-72122679 | Msa0041700:CDS | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1_1:72122904-72122923 | Msa0041700:intron | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1_1:72122905-72122924 | Msa0041700:intron | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1_1:72122923-72122942 | Msa0041700:intron | 25.0% |
| !! | TTATTAGCAATGGTATTTTG+AGG | + | chr1_1:72123007-72123026 | None:intergenic | 25.0% |
| ! | GGACTTAAAATTATTAGCAA+TGG | + | chr1_1:72123017-72123036 | None:intergenic | 25.0% |
| !! | CTGTGATTTTGAACTATTAA+AGG | - | chr1_1:72123057-72123076 | Msa0041700:intron | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1_1:72123121-72123140 | Msa0041700:CDS | 25.0% |
| ! | TCTTACTCATTAATTATAGG+TGG | - | chr1_1:72123250-72123269 | Msa0041700:CDS | 25.0% |
| !!! | CTCATGTTTTTACCTTAATT+TGG | + | chr1_1:72123328-72123347 | None:intergenic | 25.0% |
| ! | CAAATTAAGGTAAAAACATG+AGG | - | chr1_1:72123326-72123345 | Msa0041700:CDS | 25.0% |
| !! | TTTTGCACCGAATTAAAATT+TGG | + | chr1_1:72123377-72123396 | None:intergenic | 25.0% |
| ! | TATATTGCTAGTATCAGAAA+TGG | + | chr1_1:72122210-72122229 | None:intergenic | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1_1:72122417-72122436 | Msa0041700:intron | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | - | chr1_1:72122497-72122516 | Msa0041700:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1_1:72122660-72122679 | Msa0041700:CDS | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1_1:72122904-72122923 | Msa0041700:intron | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1_1:72122905-72122924 | Msa0041700:intron | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1_1:72122923-72122942 | Msa0041700:intron | 25.0% |
| !! | TTATTAGCAATGGTATTTTG+AGG | + | chr1_1:72123007-72123026 | None:intergenic | 25.0% |
| ! | GGACTTAAAATTATTAGCAA+TGG | + | chr1_1:72123017-72123036 | None:intergenic | 25.0% |
| !! | CTGTGATTTTGAACTATTAA+AGG | - | chr1_1:72123057-72123076 | Msa0041700:intron | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1_1:72123121-72123140 | Msa0041700:CDS | 25.0% |
| ! | TCTTACTCATTAATTATAGG+TGG | - | chr1_1:72123250-72123269 | Msa0041700:CDS | 25.0% |
| !!! | CTCATGTTTTTACCTTAATT+TGG | + | chr1_1:72123328-72123347 | None:intergenic | 25.0% |
| ! | CAAATTAAGGTAAAAACATG+AGG | - | chr1_1:72123326-72123345 | Msa0041700:CDS | 25.0% |
| !! | TTTTGCACCGAATTAAAATT+TGG | + | chr1_1:72123377-72123396 | None:intergenic | 25.0% |
| CTTGGAAGTTATTATGTAAC+TGG | + | chr1_1:72122031-72122050 | None:intergenic | 30.0% | |
| TAGAAATTCCATCTACATCA+TGG | - | chr1_1:72122081-72122100 | Msa0041700:intron | 30.0% | |
| AACACTATAAGTGCTAACAT+TGG | + | chr1_1:72122300-72122319 | None:intergenic | 30.0% | |
| ! | AGTGTTTTCAGTTATCTGTT+GGG | + | chr1_1:72122336-72122355 | None:intergenic | 30.0% |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1_1:72122337-72122356 | None:intergenic | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1_1:72122415-72122434 | None:intergenic | 30.0% |
| TGCTTATACATAATACCAGA+GGG | + | chr1_1:72122494-72122513 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | + | chr1_1:72122495-72122514 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1_1:72122735-72122754 | Msa0041700:CDS | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1_1:72122898-72122917 | None:intergenic | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1_1:72122926-72122945 | Msa0041700:intron | 30.0% | |
| !! | GTATTTTGAGGAAATGCAAT+TGG | + | chr1_1:72122995-72123014 | None:intergenic | 30.0% |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1_1:72123038-72123057 | None:intergenic | 30.0% | |
| AGTTCAAAATCACAGTACTT+TGG | + | chr1_1:72123052-72123071 | None:intergenic | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1_1:72123301-72123320 | Msa0041700:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1_1:72123313-72123332 | Msa0041700:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_1:72123508-72123527 | None:intergenic | 30.0% | |
| CTTGGAAGTTATTATGTAAC+TGG | + | chr1_1:72122031-72122050 | None:intergenic | 30.0% | |
| TAGAAATTCCATCTACATCA+TGG | - | chr1_1:72122081-72122100 | Msa0041700:intron | 30.0% | |
| AACACTATAAGTGCTAACAT+TGG | + | chr1_1:72122300-72122319 | None:intergenic | 30.0% | |
| ! | AGTGTTTTCAGTTATCTGTT+GGG | + | chr1_1:72122336-72122355 | None:intergenic | 30.0% |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1_1:72122337-72122356 | None:intergenic | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1_1:72122415-72122434 | None:intergenic | 30.0% |
| TGCTTATACATAATACCAGA+GGG | + | chr1_1:72122494-72122513 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | + | chr1_1:72122495-72122514 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1_1:72122735-72122754 | Msa0041700:CDS | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1_1:72122898-72122917 | None:intergenic | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1_1:72122926-72122945 | Msa0041700:intron | 30.0% | |
| !! | GTATTTTGAGGAAATGCAAT+TGG | + | chr1_1:72122995-72123014 | None:intergenic | 30.0% |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1_1:72123038-72123057 | None:intergenic | 30.0% | |
| AGTTCAAAATCACAGTACTT+TGG | + | chr1_1:72123052-72123071 | None:intergenic | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1_1:72123301-72123320 | Msa0041700:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1_1:72123313-72123332 | Msa0041700:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_1:72123508-72123527 | None:intergenic | 30.0% | |
| GTTAGCACTTATAGTGTTCA+AGG | - | chr1_1:72122302-72122321 | Msa0041700:intron | 35.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1_1:72122347-72122366 | Msa0041700:CDS | 35.0% |
| AGAGTTTGGTCAAGATGTTT+CGG | - | chr1_1:72122361-72122380 | Msa0041700:CDS | 35.0% | |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1_1:72122404-72122423 | Msa0041700:intron | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1_1:72122476-72122495 | Msa0041700:intron | 35.0% | |
| ! | TGTTTACATTTAAGACCGGA+AGG | - | chr1_1:72122563-72122582 | Msa0041700:CDS | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1_1:72122597-72122616 | Msa0041700:CDS | 35.0% |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1_1:72122601-72122620 | None:intergenic | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1_1:72122619-72122638 | Msa0041700:CDS | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1_1:72122722-72122741 | None:intergenic | 35.0% |
| AATCTAGGAAGAAACCAAAG+TGG | - | chr1_1:72122750-72122769 | Msa0041700:CDS | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+GGG | - | chr1_1:72122751-72122770 | Msa0041700:CDS | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | - | chr1_1:72122854-72122873 | Msa0041700:intron | 35.0% |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_1:72123499-72123518 | Msa0041700:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1_1:72123511-72123530 | Msa0041700:CDS | 35.0% | |
| GTTAGCACTTATAGTGTTCA+AGG | - | chr1_1:72122302-72122321 | Msa0041700:intron | 35.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1_1:72122347-72122366 | Msa0041700:CDS | 35.0% |
| AGAGTTTGGTCAAGATGTTT+CGG | - | chr1_1:72122361-72122380 | Msa0041700:CDS | 35.0% | |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1_1:72122404-72122423 | Msa0041700:intron | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1_1:72122476-72122495 | Msa0041700:intron | 35.0% | |
| ! | TGTTTACATTTAAGACCGGA+AGG | - | chr1_1:72122563-72122582 | Msa0041700:CDS | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1_1:72122597-72122616 | Msa0041700:CDS | 35.0% |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1_1:72122601-72122620 | None:intergenic | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1_1:72122619-72122638 | Msa0041700:CDS | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1_1:72122722-72122741 | None:intergenic | 35.0% |
| AATCTAGGAAGAAACCAAAG+TGG | - | chr1_1:72122750-72122769 | Msa0041700:CDS | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+GGG | - | chr1_1:72122751-72122770 | Msa0041700:CDS | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | - | chr1_1:72122854-72122873 | Msa0041700:intron | 35.0% |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_1:72123499-72123518 | Msa0041700:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1_1:72123511-72123530 | Msa0041700:CDS | 35.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | - | chr1_1:72121958-72121977 | Msa0041700:CDS | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | - | chr1_1:72121972-72121991 | Msa0041700:CDS | 40.0% | |
| !!! | TAGTGGATTTTACACAGCTG+AGG | - | chr1_1:72121989-72122008 | Msa0041700:CDS | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | - | chr1_1:72122004-72122023 | Msa0041700:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | - | chr1_1:72122005-72122024 | Msa0041700:CDS | 40.0% |
| CATAATGGTGCTCAGAAACT+TGG | + | chr1_1:72122049-72122068 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | - | chr1_1:72122047-72122066 | Msa0041700:intron | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | + | chr1_1:72122107-72122126 | None:intergenic | 40.0% | |
| ! | GCTATTCATGCTGACTATTG+TGG | + | chr1_1:72122120-72122139 | None:intergenic | 40.0% |
| GGCATTCATGTAGCTAATGT+TGG | + | chr1_1:72122279-72122298 | None:intergenic | 40.0% | |
| ! | GTTCTTGATACCCTCTTTTG+CGG | + | chr1_1:72122390-72122409 | None:intergenic | 40.0% |
| AAGATCTAGGAGCTCAATGA+AGG | - | chr1_1:72122430-72122449 | Msa0041700:intron | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | + | chr1_1:72122618-72122637 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGAACTCCCACTT+TGG | + | chr1_1:72122767-72122786 | None:intergenic | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1_1:72122796-72122815 | Msa0041700:intron | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1_1:72122965-72122984 | None:intergenic | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1_1:72123170-72123189 | None:intergenic | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1_1:72123171-72123190 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1_1:72123181-72123200 | None:intergenic | 40.0% | |
| AAAAACATGAGGATCCTCCT+TGG | - | chr1_1:72123337-72123356 | Msa0041700:CDS | 40.0% | |
| AAAACATGAGGATCCTCCTT+GGG | - | chr1_1:72123338-72123357 | Msa0041700:CDS | 40.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | - | chr1_1:72121958-72121977 | Msa0041700:CDS | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | - | chr1_1:72121972-72121991 | Msa0041700:CDS | 40.0% | |
| !!! | TAGTGGATTTTACACAGCTG+AGG | - | chr1_1:72121989-72122008 | Msa0041700:CDS | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | - | chr1_1:72122004-72122023 | Msa0041700:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | - | chr1_1:72122005-72122024 | Msa0041700:CDS | 40.0% |
| CATAATGGTGCTCAGAAACT+TGG | + | chr1_1:72122049-72122068 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | - | chr1_1:72122047-72122066 | Msa0041700:intron | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | + | chr1_1:72122107-72122126 | None:intergenic | 40.0% | |
| ! | GCTATTCATGCTGACTATTG+TGG | + | chr1_1:72122120-72122139 | None:intergenic | 40.0% |
| GGCATTCATGTAGCTAATGT+TGG | + | chr1_1:72122279-72122298 | None:intergenic | 40.0% | |
| ! | GTTCTTGATACCCTCTTTTG+CGG | + | chr1_1:72122390-72122409 | None:intergenic | 40.0% |
| AAGATCTAGGAGCTCAATGA+AGG | - | chr1_1:72122430-72122449 | Msa0041700:intron | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | + | chr1_1:72122618-72122637 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGAACTCCCACTT+TGG | + | chr1_1:72122767-72122786 | None:intergenic | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1_1:72122796-72122815 | Msa0041700:intron | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1_1:72122965-72122984 | None:intergenic | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1_1:72123170-72123189 | None:intergenic | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1_1:72123171-72123190 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1_1:72123181-72123200 | None:intergenic | 40.0% | |
| AAAAACATGAGGATCCTCCT+TGG | - | chr1_1:72123337-72123356 | Msa0041700:CDS | 40.0% | |
| AAAACATGAGGATCCTCCTT+GGG | - | chr1_1:72123338-72123357 | Msa0041700:CDS | 40.0% | |
| ATTCCATCTACATCATGGCC+AGG | - | chr1_1:72122086-72122105 | Msa0041700:intron | 45.0% | |
| TGTTTCGGAATCCGCAAAAG+AGG | - | chr1_1:72122376-72122395 | Msa0041700:CDS | 45.0% | |
| GTTTCGGAATCCGCAAAAGA+GGG | - | chr1_1:72122377-72122396 | Msa0041700:CDS | 45.0% | |
| !! | AGAGGGTATCAAGAACAACC+TGG | - | chr1_1:72122394-72122413 | Msa0041700:intron | 45.0% |
| TCTAGGAGCTCAATGAAGGT+AGG | - | chr1_1:72122434-72122453 | Msa0041700:intron | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | - | chr1_1:72122509-72122528 | Msa0041700:intron | 45.0% |
| AGGAAGTGACTTACTCCTTC+CGG | + | chr1_1:72122581-72122600 | None:intergenic | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1_1:72122814-72122833 | Msa0041700:intron | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1_1:72122957-72122976 | None:intergenic | 45.0% | |
| ! | CATTAGGGACTAGGCTTTGT+AGG | + | chr1_1:72123155-72123174 | None:intergenic | 45.0% |
| CTACAAAGCCTAGTCCCTAA+TGG | - | chr1_1:72123153-72123172 | Msa0041700:CDS | 45.0% | |
| ATTCATAGTAAGGCCCAAGG+AGG | + | chr1_1:72123354-72123373 | None:intergenic | 45.0% | |
| TGGATTCATAGTAAGGCCCA+AGG | + | chr1_1:72123357-72123376 | None:intergenic | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1_1:72123473-72123492 | Msa0041700:CDS | 45.0% |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1_1:72123543-72123562 | None:intergenic | 45.0% | |
| ATTCCATCTACATCATGGCC+AGG | - | chr1_1:72122086-72122105 | Msa0041700:intron | 45.0% | |
| TGTTTCGGAATCCGCAAAAG+AGG | - | chr1_1:72122376-72122395 | Msa0041700:CDS | 45.0% | |
| GTTTCGGAATCCGCAAAAGA+GGG | - | chr1_1:72122377-72122396 | Msa0041700:CDS | 45.0% | |
| !! | AGAGGGTATCAAGAACAACC+TGG | - | chr1_1:72122394-72122413 | Msa0041700:intron | 45.0% |
| TCTAGGAGCTCAATGAAGGT+AGG | - | chr1_1:72122434-72122453 | Msa0041700:intron | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | - | chr1_1:72122509-72122528 | Msa0041700:intron | 45.0% |
| AGGAAGTGACTTACTCCTTC+CGG | + | chr1_1:72122581-72122600 | None:intergenic | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1_1:72122814-72122833 | Msa0041700:intron | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1_1:72122957-72122976 | None:intergenic | 45.0% | |
| ! | CATTAGGGACTAGGCTTTGT+AGG | + | chr1_1:72123155-72123174 | None:intergenic | 45.0% |
| CTACAAAGCCTAGTCCCTAA+TGG | - | chr1_1:72123153-72123172 | Msa0041700:CDS | 45.0% | |
| ATTCATAGTAAGGCCCAAGG+AGG | + | chr1_1:72123354-72123373 | None:intergenic | 45.0% | |
| TGGATTCATAGTAAGGCCCA+AGG | + | chr1_1:72123357-72123376 | None:intergenic | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1_1:72123473-72123492 | Msa0041700:CDS | 45.0% |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1_1:72123543-72123562 | None:intergenic | 45.0% | |
| TGTCCTGGCCATGATGTAGA+TGG | + | chr1_1:72122092-72122111 | None:intergenic | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1_1:72122775-72122794 | Msa0041700:intron | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1_1:72123164-72123183 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1_1:72123161-72123180 | Msa0041700:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1_1:72123271-72123290 | Msa0041700:CDS | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1_1:72123285-72123304 | None:intergenic | 50.0% | |
| TGTCCTGGCCATGATGTAGA+TGG | + | chr1_1:72122092-72122111 | None:intergenic | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1_1:72122775-72122794 | Msa0041700:intron | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1_1:72123164-72123183 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1_1:72123161-72123180 | Msa0041700:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1_1:72123271-72123290 | Msa0041700:CDS | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1_1:72123285-72123304 | None:intergenic | 50.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1_1:72122817-72122836 | Msa0041700:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1_1:72122947-72122966 | Msa0041700:intron | 55.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1_1:72122817-72122836 | Msa0041700:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1_1:72122947-72122966 | Msa0041700:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72121948 | 72123570 | 72121948 | ID=Msa0041700;Name=Msa0041700 |
| chr1_1 | mRNA | 72121948 | 72123570 | 72121948 | ID=Msa0041700-mRNA-1;Parent=Msa0041700;Name=Msa0041700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|330 |
| chr1_1 | exon | 72123067 | 72123570 | 72123067 | ID=Msa0041700-mRNA-1:exon:23988;Parent=Msa0041700-mRNA-1 |
| chr1_1 | exon | 72122536 | 72122793 | 72122536 | ID=Msa0041700-mRNA-1:exon:23987;Parent=Msa0041700-mRNA-1 |
| chr1_1 | exon | 72122336 | 72122401 | 72122336 | ID=Msa0041700-mRNA-1:exon:23986;Parent=Msa0041700-mRNA-1 |
| chr1_1 | exon | 72122184 | 72122249 | 72122184 | ID=Msa0041700-mRNA-1:exon:23985;Parent=Msa0041700-mRNA-1 |
| chr1_1 | exon | 72121948 | 72122046 | 72121948 | ID=Msa0041700-mRNA-1:exon:23984;Parent=Msa0041700-mRNA-1 |
| chr1_1 | CDS | 72123067 | 72123570 | 72123067 | ID=Msa0041700-mRNA-1:cds;Parent=Msa0041700-mRNA-1 |
| chr1_1 | CDS | 72122536 | 72122793 | 72122536 | ID=Msa0041700-mRNA-1:cds;Parent=Msa0041700-mRNA-1 |
| chr1_1 | CDS | 72122336 | 72122401 | 72122336 | ID=Msa0041700-mRNA-1:cds;Parent=Msa0041700-mRNA-1 |
| chr1_1 | CDS | 72122184 | 72122249 | 72122184 | ID=Msa0041700-mRNA-1:cds;Parent=Msa0041700-mRNA-1 |
| chr1_1 | CDS | 72121948 | 72122046 | 72121948 | ID=Msa0041700-mRNA-1:cds;Parent=Msa0041700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
