Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041920 | sp|Q2V9B0|MY1R1_SOLTU | 82.692 | 52 | 9 | 0 | 36 | 87 | 90 | 141 | 2.56e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0041920 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041920 | MtrunA17_Chr4g0059701 | 88.462 | 52 | 6 | 0 | 36 | 87 | 79 | 130 | 7.86e-30 | 107 |
| Msa0041920 | MtrunA17_Chr8g0389241 | 67.143 | 70 | 18 | 1 | 20 | 89 | 89 | 153 | 2.47e-29 | 105 |
| Msa0041920 | MtrunA17_Chr6g0488471 | 81.481 | 54 | 10 | 0 | 36 | 89 | 92 | 145 | 4.72e-29 | 105 |
| Msa0041920 | MtrunA17_Chr5g0415191 | 81.132 | 53 | 10 | 0 | 36 | 88 | 97 | 149 | 2.01e-28 | 103 |
| Msa0041920 | MtrunA17_Chr2g0331031 | 74.074 | 54 | 14 | 0 | 36 | 89 | 104 | 157 | 6.95e-27 | 100 |
| Msa0041920 | MtrunA17_Chr4g0055931 | 75.926 | 54 | 13 | 0 | 36 | 89 | 90 | 143 | 9.12e-27 | 99.8 |
| Msa0041920 | MtrunA17_Chr6g0452791 | 87.500 | 48 | 6 | 0 | 41 | 88 | 80 | 127 | 1.46e-26 | 95.9 |
| Msa0041920 | MtrunA17_Chr3g0092621 | 80.769 | 52 | 10 | 0 | 37 | 88 | 80 | 131 | 1.90e-26 | 95.5 |
| Msa0041920 | MtrunA17_Chr3g0104071 | 75.926 | 54 | 13 | 0 | 36 | 89 | 142 | 195 | 2.08e-26 | 98.6 |
| Msa0041920 | MtrunA17_Chr5g0429521 | 75.926 | 54 | 13 | 0 | 36 | 89 | 127 | 180 | 2.61e-26 | 98.2 |
| Msa0041920 | MtrunA17_Chr7g0241761 | 74.074 | 54 | 14 | 0 | 36 | 89 | 135 | 188 | 5.03e-26 | 97.4 |
| Msa0041920 | MtrunA17_Chr4g0062741 | 74.074 | 54 | 14 | 0 | 36 | 89 | 133 | 186 | 5.62e-26 | 97.4 |
| Msa0041920 | MtrunA17_Chr1g0162081 | 74.074 | 54 | 14 | 0 | 36 | 89 | 117 | 170 | 3.18e-25 | 95.1 |
| Msa0041920 | MtrunA17_Chr1g0210471 | 66.154 | 65 | 22 | 0 | 25 | 89 | 108 | 172 | 1.98e-24 | 92.0 |
| Msa0041920 | MtrunA17_Chr5g0436501 | 70.370 | 54 | 16 | 0 | 36 | 89 | 120 | 173 | 5.73e-24 | 91.3 |
| Msa0041920 | MtrunA17_Chr3g0135671 | 76.000 | 50 | 12 | 0 | 40 | 89 | 90 | 139 | 1.34e-23 | 89.7 |
| Msa0041920 | MtrunA17_Chr5g0440731 | 62.500 | 48 | 18 | 0 | 41 | 88 | 105 | 152 | 1.43e-17 | 74.7 |
| Msa0041920 | MtrunA17_Chr5g0440741 | 65.217 | 46 | 16 | 0 | 43 | 88 | 102 | 147 | 1.55e-17 | 74.7 |
| Msa0041920 | MtrunA17_Chr5g0409831 | 62.500 | 48 | 18 | 0 | 41 | 88 | 77 | 124 | 3.86e-17 | 72.8 |
| Msa0041920 | MtrunA17_Chr5g0409841 | 63.043 | 46 | 17 | 0 | 43 | 88 | 94 | 139 | 4.96e-16 | 69.7 |
| Msa0041920 | MtrunA17_Chr8g0365011 | 52.632 | 57 | 15 | 1 | 43 | 87 | 94 | 150 | 1.73e-14 | 66.2 |
| Msa0041920 | MtrunA17_Chr5g0432921 | 63.043 | 46 | 16 | 1 | 43 | 88 | 115 | 159 | 5.90e-13 | 61.6 |
| Msa0041920 | MtrunA17_Chr5g0432941 | 50.820 | 61 | 29 | 1 | 28 | 88 | 100 | 159 | 7.19e-13 | 61.2 |
| Msa0041920 | MtrunA17_Chr1g0192061 | 47.619 | 63 | 30 | 2 | 27 | 89 | 49 | 108 | 9.39e-13 | 60.5 |
| Msa0041920 | MtrunA17_Chr8g0364731 | 70.000 | 40 | 12 | 0 | 50 | 89 | 10 | 49 | 5.96e-12 | 58.2 |
| Msa0041920 | MtrunA17_Chr3g0113121 | 55.319 | 47 | 21 | 0 | 43 | 89 | 97 | 143 | 8.98e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041920 | AT5G47390.1 | 79.630 | 54 | 11 | 0 | 36 | 89 | 91 | 144 | 5.41e-28 | 103 |
| Msa0041920 | AT1G70000.1 | 81.132 | 53 | 10 | 0 | 36 | 88 | 93 | 145 | 4.43e-27 | 99.8 |
| Msa0041920 | AT1G70000.2 | 81.132 | 53 | 10 | 0 | 36 | 88 | 93 | 145 | 4.43e-27 | 99.8 |
| Msa0041920 | AT3G16350.1 | 77.358 | 53 | 12 | 0 | 36 | 88 | 132 | 184 | 6.96e-27 | 101 |
| Msa0041920 | AT5G58900.1 | 75.926 | 54 | 13 | 0 | 36 | 89 | 136 | 189 | 1.73e-26 | 98.6 |
| Msa0041920 | AT1G19000.2 | 81.250 | 48 | 9 | 0 | 40 | 87 | 101 | 148 | 3.64e-26 | 97.8 |
| Msa0041920 | AT1G19000.1 | 81.250 | 48 | 9 | 0 | 40 | 87 | 101 | 148 | 3.64e-26 | 97.8 |
| Msa0041920 | AT2G38090.1 | 72.222 | 54 | 15 | 0 | 36 | 89 | 136 | 189 | 1.60e-25 | 96.3 |
| Msa0041920 | AT1G74840.2 | 81.250 | 48 | 9 | 0 | 40 | 87 | 95 | 142 | 2.11e-25 | 94.7 |
| Msa0041920 | AT1G74840.1 | 81.250 | 48 | 9 | 0 | 40 | 87 | 95 | 142 | 2.64e-25 | 95.1 |
| Msa0041920 | AT1G49010.1 | 74.074 | 54 | 14 | 0 | 36 | 89 | 129 | 182 | 3.13e-25 | 95.9 |
| Msa0041920 | AT5G56840.1 | 78.000 | 50 | 11 | 0 | 40 | 89 | 90 | 139 | 3.86e-25 | 94.0 |
| Msa0041920 | AT5G08520.1 | 72.222 | 54 | 15 | 0 | 36 | 89 | 113 | 166 | 1.52e-24 | 93.6 |
| Msa0041920 | AT5G61620.1 | 70.370 | 54 | 16 | 0 | 36 | 89 | 103 | 156 | 2.17e-24 | 93.6 |
| Msa0041920 | AT5G04760.1 | 72.727 | 55 | 15 | 0 | 35 | 89 | 93 | 147 | 5.48e-24 | 90.5 |
| Msa0041920 | AT5G05790.2 | 72.000 | 50 | 14 | 0 | 40 | 89 | 130 | 179 | 6.89e-23 | 89.0 |
| Msa0041920 | AT5G05790.1 | 72.000 | 50 | 14 | 0 | 40 | 89 | 130 | 179 | 6.89e-23 | 89.0 |
| Msa0041920 | AT5G01200.1 | 68.519 | 54 | 17 | 0 | 36 | 89 | 141 | 194 | 6.73e-22 | 86.3 |
| Msa0041920 | AT3G11280.2 | 72.000 | 50 | 14 | 0 | 40 | 89 | 126 | 175 | 1.07e-21 | 85.5 |
| Msa0041920 | AT3G11280.1 | 72.000 | 50 | 14 | 0 | 40 | 89 | 126 | 175 | 1.07e-21 | 85.5 |
| Msa0041920 | AT3G10580.1 | 68.000 | 50 | 16 | 0 | 40 | 89 | 94 | 143 | 1.85e-20 | 82.8 |
| Msa0041920 | AT3G10580.2 | 68.000 | 50 | 16 | 0 | 40 | 89 | 94 | 143 | 1.30e-19 | 80.1 |
| Msa0041920 | AT4G09450.1 | 68.627 | 51 | 16 | 0 | 39 | 89 | 89 | 139 | 1.44e-19 | 79.0 |
| Msa0041920 | AT5G23650.1 | 68.750 | 48 | 15 | 0 | 40 | 87 | 119 | 166 | 1.03e-17 | 75.9 |
| Msa0041920 | AT3G10590.1 | 41.667 | 84 | 47 | 1 | 5 | 86 | 73 | 156 | 1.69e-12 | 60.5 |
Find 10 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTTGGATTGGAGAAAGT+GGG | 0.463944 | 1_1:-72504723 | Msa0041920:CDS |
| AGAAAGTGGGAAAAGGTGAT+TGG | 0.482958 | 1_1:-72504710 | Msa0041920:CDS |
| TTTGGTTGGATTGGAGAAAG+TGG | 0.531455 | 1_1:-72504724 | Msa0041920:CDS |
| GGATTGGAGAAAGTGGGAAA+AGG | 0.562648 | 1_1:-72504717 | Msa0041920:CDS |
| TTGTGCTCTTCCTCAGTCCA+CGG | 0.578432 | 1_1:+72504753 | None:intergenic |
| GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 1_1:-72504695 | Msa0041920:CDS |
| GTGGGAAAAGGTGATTGGAG+AGG | 0.624127 | 1_1:-72504705 | Msa0041920:CDS |
| TGAATGGATCAGGGATTCCG+TGG | 0.626840 | 1_1:-72504770 | Msa0041920:intron |
| GCATGACTTGCAACATGCGT+AGG | 0.636946 | 1_1:+72504651 | None:intergenic |
| ATCAGGGATTCCGTGGACTG+AGG | 0.660333 | 1_1:-72504763 | Msa0041920:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAATAATAAAAATTGGA+TGG | + | chr1_1:72504727-72504746 | None:intergenic | 15.0% |
| !! | CTTGCAAAAATAATAAAAAT+TGG | + | chr1_1:72504731-72504750 | None:intergenic | 15.0% |
| !! | CAAAAATAATAAAAATTGGA+TGG | + | chr1_1:72504727-72504746 | None:intergenic | 15.0% |
| !! | CTTGCAAAAATAATAAAAAT+TGG | + | chr1_1:72504731-72504750 | None:intergenic | 15.0% |
| !! | TATTGAAGCAAAAATATTCA+TGG | + | chr1_1:72504671-72504690 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | + | chr1_1:72505235-72505254 | None:intergenic | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr1_1:72505269-72505288 | Msa0041920:CDS | 20.0% |
| !! | TATTGAAGCAAAAATATTCA+TGG | + | chr1_1:72504671-72504690 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | + | chr1_1:72505235-72505254 | None:intergenic | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr1_1:72505269-72505288 | Msa0041920:CDS | 20.0% |
| ! | CTTCAATATTAATTGTGTCT+TGG | - | chr1_1:72504683-72504702 | Msa0041920:CDS | 25.0% |
| ! | AATATCTACTTAAAATCCTG+AGG | + | chr1_1:72505084-72505103 | None:intergenic | 25.0% |
| !! | TCTCACATTTAAATGGTTTT+TGG | - | chr1_1:72505140-72505159 | Msa0041920:intron | 25.0% |
| ! | CTTCAATATTAATTGTGTCT+TGG | - | chr1_1:72504683-72504702 | Msa0041920:CDS | 25.0% |
| ! | AATATCTACTTAAAATCCTG+AGG | + | chr1_1:72505084-72505103 | None:intergenic | 25.0% |
| !! | TCTCACATTTAAATGGTTTT+TGG | - | chr1_1:72505140-72505159 | Msa0041920:intron | 25.0% |
| TTTAATCTTTCATCTCTAGC+AGG | - | chr1_1:72504765-72504784 | Msa0041920:intron | 30.0% | |
| !!! | ACTCAGCAACAAACATTTTT+TGG | + | chr1_1:72504816-72504835 | None:intergenic | 30.0% |
| CAAATTCACAAAAAACACAC+AGG | + | chr1_1:72504870-72504889 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTGAATTTGCTTC+TGG | - | chr1_1:72504874-72504893 | Msa0041920:intron | 30.0% |
| AATGCAGCACAATTCAAAAT+TGG | + | chr1_1:72504936-72504955 | None:intergenic | 30.0% | |
| ACATGTGCACAAACTTTAAT+TGG | - | chr1_1:72504999-72505018 | Msa0041920:intron | 30.0% | |
| ATAACTACATCTTATGCAAG+AGG | - | chr1_1:72505023-72505042 | Msa0041920:intron | 30.0% | |
| CTACATGTCTCACATTTAAA+TGG | - | chr1_1:72505133-72505152 | Msa0041920:intron | 30.0% | |
| ! | TGATTTTCTTTGAATGGATC+AGG | - | chr1_1:72505275-72505294 | Msa0041920:intron | 30.0% |
| ! | GATTTTCTTTGAATGGATCA+GGG | - | chr1_1:72505276-72505295 | Msa0041920:intron | 30.0% |
| TTTAATCTTTCATCTCTAGC+AGG | - | chr1_1:72504765-72504784 | Msa0041920:intron | 30.0% | |
| !!! | ACTCAGCAACAAACATTTTT+TGG | + | chr1_1:72504816-72504835 | None:intergenic | 30.0% |
| CAAATTCACAAAAAACACAC+AGG | + | chr1_1:72504870-72504889 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTGAATTTGCTTC+TGG | - | chr1_1:72504874-72504893 | Msa0041920:intron | 30.0% |
| AATGCAGCACAATTCAAAAT+TGG | + | chr1_1:72504936-72504955 | None:intergenic | 30.0% | |
| ACATGTGCACAAACTTTAAT+TGG | - | chr1_1:72504999-72505018 | Msa0041920:intron | 30.0% | |
| ATAACTACATCTTATGCAAG+AGG | - | chr1_1:72505023-72505042 | Msa0041920:intron | 30.0% | |
| CTACATGTCTCACATTTAAA+TGG | - | chr1_1:72505133-72505152 | Msa0041920:intron | 30.0% | |
| ! | TGATTTTCTTTGAATGGATC+AGG | - | chr1_1:72505275-72505294 | Msa0041920:intron | 30.0% |
| ! | GATTTTCTTTGAATGGATCA+GGG | - | chr1_1:72505276-72505295 | Msa0041920:intron | 30.0% |
| GATGGAGCAAATTGAAACAA+AGG | + | chr1_1:72504709-72504728 | None:intergenic | 35.0% | |
| ACAAAAAACACACAGGATAG+GGG | + | chr1_1:72504863-72504882 | None:intergenic | 35.0% | |
| CACAAAAAACACACAGGATA+GGG | + | chr1_1:72504864-72504883 | None:intergenic | 35.0% | |
| TCACAAAAAACACACAGGAT+AGG | + | chr1_1:72504865-72504884 | None:intergenic | 35.0% | |
| !! | GAATTTGCTTCTGGTTTGTA+AGG | - | chr1_1:72504883-72504902 | Msa0041920:intron | 35.0% |
| !! | TAGCAGGTTTGTTACTTACA+AGG | - | chr1_1:72504906-72504925 | Msa0041920:intron | 35.0% |
| TTGTGCTGCATTATTCATCT+AGG | - | chr1_1:72504944-72504963 | Msa0041920:intron | 35.0% | |
| TGTGCTGCATTATTCATCTA+GGG | - | chr1_1:72504945-72504964 | Msa0041920:intron | 35.0% | |
| TCACTTGGATTGAGCATTAA+AGG | - | chr1_1:72505051-72505070 | Msa0041920:intron | 35.0% | |
| CATTAAAGGTTGTTTACCTC+AGG | - | chr1_1:72505065-72505084 | Msa0041920:intron | 35.0% | |
| !!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr1_1:72505322-72505341 | Msa0041920:intron | 35.0% |
| GATGGAGCAAATTGAAACAA+AGG | + | chr1_1:72504709-72504728 | None:intergenic | 35.0% | |
| ACAAAAAACACACAGGATAG+GGG | + | chr1_1:72504863-72504882 | None:intergenic | 35.0% | |
| CACAAAAAACACACAGGATA+GGG | + | chr1_1:72504864-72504883 | None:intergenic | 35.0% | |
| TCACAAAAAACACACAGGAT+AGG | + | chr1_1:72504865-72504884 | None:intergenic | 35.0% | |
| !! | GAATTTGCTTCTGGTTTGTA+AGG | - | chr1_1:72504883-72504902 | Msa0041920:intron | 35.0% |
| !! | TAGCAGGTTTGTTACTTACA+AGG | - | chr1_1:72504906-72504925 | Msa0041920:intron | 35.0% |
| TTGTGCTGCATTATTCATCT+AGG | - | chr1_1:72504944-72504963 | Msa0041920:intron | 35.0% | |
| TGTGCTGCATTATTCATCTA+GGG | - | chr1_1:72504945-72504964 | Msa0041920:intron | 35.0% | |
| TCACTTGGATTGAGCATTAA+AGG | - | chr1_1:72505051-72505070 | Msa0041920:intron | 35.0% | |
| CATTAAAGGTTGTTTACCTC+AGG | - | chr1_1:72505065-72505084 | Msa0041920:intron | 35.0% | |
| !!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr1_1:72505322-72505341 | Msa0041920:intron | 35.0% |
| CAAAAAACACACAGGATAGG+GGG | + | chr1_1:72504862-72504881 | None:intergenic | 40.0% | |
| GTGCTGCATTATTCATCTAG+GGG | - | chr1_1:72504946-72504965 | Msa0041920:intron | 40.0% | |
| ATGCAAGAGGAACTTTCACT+TGG | - | chr1_1:72505036-72505055 | Msa0041920:intron | 40.0% | |
| CATTCTCTCTGAGCAAACAA+TGG | - | chr1_1:72505110-72505129 | Msa0041920:intron | 40.0% | |
| !! | GGAAGAGCACAAGATGTTTT+TGG | - | chr1_1:72505313-72505332 | Msa0041920:intron | 40.0% |
| !!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr1_1:72505317-72505336 | Msa0041920:intron | 40.0% |
| ! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr1_1:72505331-72505350 | Msa0041920:intron | 40.0% |
| ! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr1_1:72505332-72505351 | Msa0041920:intron | 40.0% |
| AGAAAGTGGGAAAAGGTGAT+TGG | - | chr1_1:72505345-72505364 | Msa0041920:intron | 40.0% | |
| CAAAAAACACACAGGATAGG+GGG | + | chr1_1:72504862-72504881 | None:intergenic | 40.0% | |
| GTGCTGCATTATTCATCTAG+GGG | - | chr1_1:72504946-72504965 | Msa0041920:intron | 40.0% | |
| ATGCAAGAGGAACTTTCACT+TGG | - | chr1_1:72505036-72505055 | Msa0041920:intron | 40.0% | |
| CATTCTCTCTGAGCAAACAA+TGG | - | chr1_1:72505110-72505129 | Msa0041920:intron | 40.0% | |
| !! | GGAAGAGCACAAGATGTTTT+TGG | - | chr1_1:72505313-72505332 | Msa0041920:intron | 40.0% |
| !!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr1_1:72505317-72505336 | Msa0041920:intron | 40.0% |
| ! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr1_1:72505331-72505350 | Msa0041920:intron | 40.0% |
| ! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr1_1:72505332-72505351 | Msa0041920:intron | 40.0% |
| AGAAAGTGGGAAAAGGTGAT+TGG | - | chr1_1:72505345-72505364 | Msa0041920:intron | 40.0% | |
| !! | CTTCTGGTTTGTAAGGTAGC+AGG | - | chr1_1:72504890-72504909 | Msa0041920:intron | 45.0% |
| GGATTGGAGAAAGTGGGAAA+AGG | - | chr1_1:72505338-72505357 | Msa0041920:intron | 45.0% | |
| GTGATTGGAGAGGAATCTCA+AGG | - | chr1_1:72505360-72505379 | Msa0041920:intron | 45.0% | |
| !! | CTTCTGGTTTGTAAGGTAGC+AGG | - | chr1_1:72504890-72504909 | Msa0041920:intron | 45.0% |
| GGATTGGAGAAAGTGGGAAA+AGG | - | chr1_1:72505338-72505357 | Msa0041920:intron | 45.0% | |
| GTGATTGGAGAGGAATCTCA+AGG | - | chr1_1:72505360-72505379 | Msa0041920:intron | 45.0% | |
| GGCTGAGAAGAGACTGCTAT+TGG | - | chr1_1:72504967-72504986 | Msa0041920:intron | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | - | chr1_1:72505285-72505304 | Msa0041920:intron | 50.0% | |
| TTGTGCTCTTCCTCAGTCCA+CGG | + | chr1_1:72505305-72505324 | None:intergenic | 50.0% | |
| GTGGGAAAAGGTGATTGGAG+AGG | - | chr1_1:72505350-72505369 | Msa0041920:intron | 50.0% | |
| ! | GCATGACTTGCAACATGCGT+AGG | + | chr1_1:72505407-72505426 | None:intergenic | 50.0% |
| GGCTGAGAAGAGACTGCTAT+TGG | - | chr1_1:72504967-72504986 | Msa0041920:intron | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | - | chr1_1:72505285-72505304 | Msa0041920:intron | 50.0% | |
| TTGTGCTCTTCCTCAGTCCA+CGG | + | chr1_1:72505305-72505324 | None:intergenic | 50.0% | |
| GTGGGAAAAGGTGATTGGAG+AGG | - | chr1_1:72505350-72505369 | Msa0041920:intron | 50.0% | |
| ! | GCATGACTTGCAACATGCGT+AGG | + | chr1_1:72505407-72505426 | None:intergenic | 50.0% |
| ! | ATCAGGGATTCCGTGGACTG+AGG | - | chr1_1:72505292-72505311 | Msa0041920:intron | 55.0% |
| ! | ATCAGGGATTCCGTGGACTG+AGG | - | chr1_1:72505292-72505311 | Msa0041920:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72504629 | 72505448 | 72504629 | ID=Msa0041920;Name=Msa0041920 |
| chr1_1 | mRNA | 72504629 | 72505448 | 72504629 | ID=Msa0041920-mRNA-1;Parent=Msa0041920;Name=Msa0041920-mRNA-1;_AED=0.21;_eAED=0.20;_QI=0|0|0|0.66|0.5|0.66|3|0|89 |
| chr1_1 | exon | 72505440 | 72505448 | 72505440 | ID=Msa0041920-mRNA-1:exon:24168;Parent=Msa0041920-mRNA-1 |
| chr1_1 | exon | 72505182 | 72505290 | 72505182 | ID=Msa0041920-mRNA-1:exon:24167;Parent=Msa0041920-mRNA-1 |
| chr1_1 | exon | 72504629 | 72504780 | 72504629 | ID=Msa0041920-mRNA-1:exon:24166;Parent=Msa0041920-mRNA-1 |
| chr1_1 | CDS | 72505440 | 72505448 | 72505440 | ID=Msa0041920-mRNA-1:cds;Parent=Msa0041920-mRNA-1 |
| chr1_1 | CDS | 72505182 | 72505290 | 72505182 | ID=Msa0041920-mRNA-1:cds;Parent=Msa0041920-mRNA-1 |
| chr1_1 | CDS | 72504629 | 72504780 | 72504629 | ID=Msa0041920-mRNA-1:cds;Parent=Msa0041920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
