AlfalfaGEDB | Msa0042090

M. sativa cultivar zhongmu-4 / Msa0042090

KEGG: K07739
GO: GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
PFAM: PF04055.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042090	sp\|Q93ZR1\|ELP3_ARATH	91.281	562	49	0	2	563	4	565	0.0	1086

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0042090	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042090	MtrunA17_Chr1g0207811	99.112	563	5	0	1	563	1	563	0.0	1157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042090	AT5G50320.1	91.281	562	49	0	2	563	4	565	0.0	1086

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Find 211 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTCCGAACCGCATC+TGG	0.408430	1_1:+72669948	Msa0042090:CDS
AAAGGAGGCTTTGAAGGCCA+CGG	0.542814	1_1:+72669714	Msa0042090:CDS
AAATATGAATGCCTTATGAT+AGG	0.398471	1_1:-72673699	None:intergenic
AAATCGGAGTCAGGACCGCC+AGG	0.474986	1_1:-72670050	None:intergenic
AAATTGGGATATGAGCTTGA+AGG	0.569511	1_1:+72673551	Msa0042090:CDS
AACAACGGCTATACCAGATG+CGG	0.676267	1_1:-72669961	None:intergenic
AACATTTGTGTCTACTGCCC+TGG	0.483658	1_1:+72670032	Msa0042090:CDS
AACCCTTATGTGCAGACAAG+AGG	0.578250	1_1:+72670254	Msa0042090:CDS
AACTTGTGGACATCATAGCA+AGG	0.660784	1_1:+72672346	Msa0042090:CDS
AACTTTCATGTCCCTTCCGG+CGG	0.546193	1_1:+72670446	Msa0042090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTTTCAGTATTAGGGTTT+GGG	-	chr1_1:72669188-72669207	None:intergenic	30.0%
CATGAAACAGTTATGAAAGA+TGG	-	chr1_1:72669287-72669306	None:intergenic	30.0%
TGAGATCTAACCATACAATA+AGG	-	chr1_1:72669523-72669542	None:intergenic	30.0%
CTAAAACAATTGAACTGTTG+AGG	-	chr1_1:72669628-72669647	None:intergenic	30.0%
GTTGAGTTTATATTAATGGG+TGG	+	chr1_1:72670423-72670442	Msa0042090:CDS	30.0%
CTTGCAAATAATTAAATGGC+AGG	-	chr1_1:72670607-72670626	None:intergenic	30.0%
CCCTAAAATGAAAAGCTATT+AGG	-	chr1_1:72670931-72670950	None:intergenic	30.0%
ACCAAGAAAAACTACAAATC+AGG	+	chr1_1:72671107-72671126	Msa0042090:intron	30.0%
TACAAATCAGGCTAATAAGA+TGG	+	chr1_1:72671119-72671138	Msa0042090:intron	30.0%
CGTAACATCAAATTTAGTAC+AGG	-	chr1_1:72671291-72671310	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	72669128	72673899	72669128	ID=Msa0042090;Name=Msa0042090
chr1_1	mRNA	72669128	72673899	72669128	ID=Msa0042090-mRNA-1;Parent=Msa0042090;Name=Msa0042090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=238\|1\|1\|1\|0.88\|0.8\|10\|298\|563
chr1_1	exon	72669128	72669272	72669128	ID=Msa0042090-mRNA-1:exon:24174;Parent=Msa0042090-mRNA-1
chr1_1	exon	72669573	72670135	72669573	ID=Msa0042090-mRNA-1:exon:24175;Parent=Msa0042090-mRNA-1
chr1_1	exon	72670250	72670319	72670250	ID=Msa0042090-mRNA-1:exon:24176;Parent=Msa0042090-mRNA-1
chr1_1	exon	72670423	72670595	72670423	ID=Msa0042090-mRNA-1:exon:24177;Parent=Msa0042090-mRNA-1
chr1_1	exon	72671488	72671662	72671488	ID=Msa0042090-mRNA-1:exon:24178;Parent=Msa0042090-mRNA-1
chr1_1	exon	72672034	72672200	72672034	ID=Msa0042090-mRNA-1:exon:24179;Parent=Msa0042090-mRNA-1
chr1_1	exon	72672323	72672542	72672323	ID=Msa0042090-mRNA-1:exon:24180;Parent=Msa0042090-mRNA-1
chr1_1	exon	72672664	72672768	72672664	ID=Msa0042090-mRNA-1:exon:24181;Parent=Msa0042090-mRNA-1
chr1_1	exon	72673018	72673170	72673018	ID=Msa0042090-mRNA-1:exon:24182;Parent=Msa0042090-mRNA-1
chr1_1	exon	72673443	72673899	72673443	ID=Msa0042090-mRNA-1:exon:24183;Parent=Msa0042090-mRNA-1
chr1_1	five_prime_UTR	72669128	72669272	72669128	ID=Msa0042090-mRNA-1:five_prime_utr;Parent=Msa0042090-mRNA-1
chr1_1	five_prime_UTR	72669573	72669665	72669573	ID=Msa0042090-mRNA-1:five_prime_utr;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72669666	72670135	72669666	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72670250	72670319	72670250	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72670423	72670595	72670423	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72671488	72671662	72671488	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72672034	72672200	72672034	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72672323	72672542	72672323	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72672664	72672768	72672664	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72673018	72673170	72673018	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	CDS	72673443	72673601	72673443	ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1
chr1_1	three_prime_UTR	72673602	72673899	72673602	ID=Msa0042090-mRNA-1:three_prime_utr;Parent=Msa0042090-mRNA-1

Gene Sequence

>Msa0042090

ATGGCAGCTGCAATGGTGGCGGAGGCAAAAAAGGCACCACGTCCTGGGAAAGGAGGCTTTGAAGGCCACGGCCTTAGTGAAGAAGAAGCACGCGTTCGAGCCATTGCAGAGATTGTAAACTCCATGGTCGACTTATCTCATAAAGGCCACAAAGTTGATCTCAATGCTCTCAAGTCTGCTGCGTGCCGTAAGTATGGCCTCTCACGTGCACCCAAACTTGTTGAGATGATTGCCGCGTTACCAGACTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCTGTCCGAACCGCATCTGGTATAGCCGTTGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCTCACATTGCCACCACCGGTAACATTTGTGTCTACTGCCCTGGCGGTCCTGACTCCGATTTTGAATACAGTACTCAGTCTTACACTGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTATAACCCTTATGTGCAGACAAGAGGTAGGATTGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCCAATGTAGAAGAGGCGGTGACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACCTGCGACAAATGCTTTCTTACGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACTTACGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGACGCCGGTTTCAAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGAGAATTTTTTGAAAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATTTACCCCACTCTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCTCCATGGACGCGTGTTTATAGAGTTCAGCGGGATATTCCAATGCCTTTGGTGACCTCTGGGGTTGAGAAAGGGAATCTAAGGGAGTTAGCATTAGCTCGAATGGAAGACTTGGGTTTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCATCACCAAATTAAACCAGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTTTGTCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTACGACTGCGAAAATGTGGCCGTAACACTACTTGTCCAGAGCTTATGGGTAAGTGTTCTATTGTTCGTGAGCTCCATGTTTATGGAACTGCTGTACCGGTTCATGGGCGGGATTCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTTATGGAGGAGGCTGAGCGGATTGCTTCGAAAGAACACAGATCAACTAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGATGAAATACCTAATGTAA

Protein sequence

>Msa0042090

MAAAMVAEAKKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSHKGHKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRGRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIASKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMMKYLM*