Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042090 | sp|Q93ZR1|ELP3_ARATH | 91.281 | 562 | 49 | 0 | 2 | 563 | 4 | 565 | 0.0 | 1086 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0042090 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042090 | MtrunA17_Chr1g0207811 | 99.112 | 563 | 5 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042090 | AT5G50320.1 | 91.281 | 562 | 49 | 0 | 2 | 563 | 4 | 565 | 0.0 | 1086 |
Find 211 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGTGAGCTCCATGTTTA+TGG | 0.109347 | 1_1:+72673099 | Msa0042090:CDS |
| GGGACAGTACTTTCAGTATT+AGG | 0.159144 | 1_1:-72669192 | None:intergenic |
| CCACCTCTTCTGGTTTAATT+TGG | 0.193138 | 1_1:-72672675 | None:intergenic |
| TCAGGTTGAGTTTATATTAA+TGG | 0.195676 | 1_1:+72670419 | Msa0042090:intron |
| CACTACTTGTCCAGAGCTTA+TGG | 0.210436 | 1_1:+72673062 | Msa0042090:CDS |
| ACGCCATTACTACAGAAAAT+TGG | 0.214514 | 1_1:+72673535 | Msa0042090:CDS |
| CGAACAAGTTCCACCTCTTC+TGG | 0.222979 | 1_1:-72672685 | None:intergenic |
| ACTAAGATAGCTGTAATTTC+TGG | 0.226240 | 1_1:+72673503 | Msa0042090:CDS |
| TCAGTATTAGGGTTTGGGTT+GGG | 0.247854 | 1_1:-72669180 | None:intergenic |
| GACAGGTTTGGCTCGGAGTT+TGG | 0.254447 | 1_1:-72669934 | None:intergenic |
| ATTACCGTGATTACTTTATA+AGG | 0.254776 | 1_1:+72670469 | Msa0042090:CDS |
| CAGTATTAGGGTTTGGGTTG+GGG | 0.268962 | 1_1:-72669179 | None:intergenic |
| ACTTGTTCGTCGTGATTATA+TGG | 0.272919 | 1_1:+72672699 | Msa0042090:CDS |
| CCAATGCCTTTGGTGACCTC+TGG | 0.281758 | 1_1:+72672423 | Msa0042090:CDS |
| GGCAATCATCTCAACAAGTT+TGG | 0.292527 | 1_1:-72669877 | None:intergenic |
| GGGTTATGGTACGCTTCTTA+TGG | 0.292786 | 1_1:+72673442 | Msa0042090:intron |
| CAGGTTGAGTTTATATTAAT+GGG | 0.294302 | 1_1:+72670420 | Msa0042090:intron |
| CTACCTCTTGTCTGCACATA+AGG | 0.308325 | 1_1:-72670257 | None:intergenic |
| TACTTTCAGTATTAGGGTTT+GGG | 0.310333 | 1_1:-72669185 | None:intergenic |
| CTTGAGCAGGATATCCTTGT+TGG | 0.326582 | 1_1:+72673009 | Msa0042090:intron |
| GGACAGTACTTTCAGTATTA+GGG | 0.332773 | 1_1:-72669191 | None:intergenic |
| AATTATTGTTAACAGGGTTA+TGG | 0.336285 | 1_1:+72673428 | Msa0042090:intron |
| TTACTGATTATTATTACATT+AGG | 0.340713 | 1_1:-72673592 | None:intergenic |
| AGTACTGCAAATTAAGAAAC+TGG | 0.347262 | 1_1:+72673761 | Msa0042090:three_prime_UTR |
| ATTGATCAGCTTAAGCGTTT+AGG | 0.349355 | 1_1:+72670281 | Msa0042090:CDS |
| CTTTATGAGCTCTGGAAAAC+TGG | 0.356965 | 1_1:+72672175 | Msa0042090:CDS |
| CAATGCCTTTGGTGACCTCT+GGG | 0.357014 | 1_1:+72672424 | Msa0042090:CDS |
| ACAGGTTTGGCTCGGAGTTT+GGG | 0.357757 | 1_1:-72669933 | None:intergenic |
| ACTCTTGTAATACGTGGAAC+TGG | 0.357820 | 1_1:+72672151 | Msa0042090:CDS |
| GGGTTGAGAAAGGGAATCTA+AGG | 0.374003 | 1_1:+72672445 | Msa0042090:CDS |
| ATTAGGTATTTCATCATGTA+AGG | 0.374054 | 1_1:-72673575 | None:intergenic |
| AGGAGGCCAGATTATTGTCT+TGG | 0.377113 | 1_1:+72671486 | Msa0042090:intron |
| AATCTTCATGATGCTTTGTC+TGG | 0.377549 | 1_1:+72670492 | Msa0042090:CDS |
| GCAATCATCTCAACAAGTTT+GGG | 0.381513 | 1_1:-72669876 | None:intergenic |
| CAGTACTAGCTTACAGAGAA+TGG | 0.381874 | 1_1:-72673745 | None:intergenic |
| GTACTTTCAGTATTAGGGTT+TGG | 0.382139 | 1_1:-72669186 | None:intergenic |
| TACCTGGATTCCAGCTTCTC+TGG | 0.383322 | 1_1:-72672523 | None:intergenic |
| TCTGCTGCGTGCCGTAAGTA+TGG | 0.383722 | 1_1:+72669840 | Msa0042090:CDS |
| TCCCTTTCAACACCAACATT+TGG | 0.384171 | 1_1:-72672061 | None:intergenic |
| TGGAACTTTCATGTCCCTTC+CGG | 0.386776 | 1_1:+72670443 | Msa0042090:CDS |
| GGAACTGCTGTACCGGTTCA+TGG | 0.389741 | 1_1:+72673120 | Msa0042090:CDS |
| AAATATGAATGCCTTATGAT+AGG | 0.398471 | 1_1:-72673699 | None:intergenic |
| AGAACCTCTCGTTCGGAGTC+TGG | 0.399137 | 1_1:-72669906 | None:intergenic |
| CTAAGATAGCTGTAATTTCT+GGG | 0.402023 | 1_1:+72673504 | Msa0042090:CDS |
| CGCCATTACTACAGAAAATT+GGG | 0.402981 | 1_1:+72673536 | Msa0042090:CDS |
| CTGAGTACTGTATTCAAAAT+CGG | 0.405571 | 1_1:-72670066 | None:intergenic |
| GCGGGATATTCCAATGCCTT+TGG | 0.406417 | 1_1:+72672413 | Msa0042090:CDS |
| GGCTAAAGACGCCGGTTTCA+AGG | 0.407082 | 1_1:+72671641 | Msa0042090:CDS |
| CAAGTTGCAACAATGCTATA+TGG | 0.408186 | 1_1:-72673876 | None:intergenic |
| AAACCTGTCCGAACCGCATC+TGG | 0.408430 | 1_1:+72669948 | Msa0042090:CDS |
| GGAGAAACTGAATCAGTGAT+AGG | 0.410002 | 1_1:-72669240 | None:intergenic |
| GTATACATGAGCTGACCTTA+TGG | 0.410495 | 1_1:+72673839 | Msa0042090:three_prime_UTR |
| CCTGGGAAAGGAGGCTTTGA+AGG | 0.415150 | 1_1:+72669708 | Msa0042090:CDS |
| GAAGAGTGAGCGATAGTATG+AGG | 0.415878 | 1_1:-72669217 | None:intergenic |
| ATGTAAGGTATATTAAAGTT+TGG | 0.417685 | 1_1:-72673808 | None:intergenic |
| GTTTAAAATGTCGTGATGTT+CGG | 0.419207 | 1_1:+72672499 | Msa0042090:CDS |
| GAGCATTGAGATCAACTTTG+TGG | 0.431098 | 1_1:-72669812 | None:intergenic |
| CAACATCCTCGTAAGTGCTT+TGG | 0.432775 | 1_1:-72671563 | None:intergenic |
| AGTATTAGGGTTTGGGTTGG+GGG | 0.435215 | 1_1:-72669178 | None:intergenic |
| GTGACCTCTGGGGTTGAGAA+AGG | 0.437552 | 1_1:+72672435 | Msa0042090:CDS |
| GGAGGCCAGATTATTGTCTT+GGG | 0.438031 | 1_1:+72671487 | Msa0042090:intron |
| TTCAGTATTAGGGTTTGGGT+TGG | 0.439409 | 1_1:-72669181 | None:intergenic |
| TTCTTACGGTTGTACACGAT+TGG | 0.440324 | 1_1:+72671530 | Msa0042090:CDS |
| ACACCAACATTTGGAAGATC+AGG | 0.441020 | 1_1:-72672052 | None:intergenic |
| ATTATATGGCAAATGAAGGT+TGG | 0.442902 | 1_1:+72672713 | Msa0042090:CDS |
| TGCTCGAATTGCACGCATAC+TGG | 0.443181 | 1_1:-72670111 | None:intergenic |
| TGCTGTACCGGTTCATGGGC+GGG | 0.453368 | 1_1:+72673125 | Msa0042090:CDS |
| GGCAGCTGCAATGGTGGCGG+AGG | 0.455678 | 1_1:+72669668 | Msa0042090:CDS |
| GGTTGTACACGATTGGAGAT+TGG | 0.457491 | 1_1:+72671537 | Msa0042090:CDS |
| TCAGAATCCCGCCCATGAAC+CGG | 0.459387 | 1_1:-72673132 | None:intergenic |
| GACACAAATGTTACCGGTGG+TGG | 0.462023 | 1_1:-72670021 | None:intergenic |
| TTCCAAATGTTGGTGTTGAA+AGG | 0.463184 | 1_1:+72672059 | Msa0042090:CDS |
| GCAGTAGACACAAATGTTAC+CGG | 0.465327 | 1_1:-72670027 | None:intergenic |
| ACTACTTGTCCAGAGCTTAT+GGG | 0.466121 | 1_1:+72673063 | Msa0042090:CDS |
| TCCAAATGTTGGTGTTGAAA+GGG | 0.466271 | 1_1:+72672060 | Msa0042090:CDS |
| GTGTTTGGAGTTATCGAGAA+TGG | 0.471467 | 1_1:+72669647 | Msa0042090:exon |
| AAATCGGAGTCAGGACCGCC+AGG | 0.474986 | 1_1:-72670050 | None:intergenic |
| GATGTTCGGACCAGAGAAGC+TGG | 0.475031 | 1_1:+72672513 | Msa0042090:CDS |
| TTATATGGCAAATGAAGGTT+GGG | 0.475457 | 1_1:+72672714 | Msa0042090:CDS |
| AGATGCGGTTCGGACAGGTT+TGG | 0.477276 | 1_1:-72669946 | None:intergenic |
| TGTATACAACAGCGAATGTA+AGG | 0.477892 | 1_1:-72673823 | None:intergenic |
| CCAGAGGTCACCAAAGGCAT+TGG | 0.478943 | 1_1:-72672423 | None:intergenic |
| AGTCCCTTGTTTAGAGCAGA+TGG | 0.482729 | 1_1:+72672112 | Msa0042090:CDS |
| TGAAACCGGCGTCTTTAGCC+AGG | 0.483067 | 1_1:-72671638 | None:intergenic |
| AACATTTGTGTCTACTGCCC+TGG | 0.483658 | 1_1:+72670032 | Msa0042090:CDS |
| CCTTCAAAGCCTCCTTTCCC+AGG | 0.487403 | 1_1:-72669708 | None:intergenic |
| GAACTGGGCTTTATGAGCTC+TGG | 0.487484 | 1_1:+72672167 | Msa0042090:CDS |
| CTCTTGTAATACGTGGAACT+GGG | 0.488163 | 1_1:+72672152 | Msa0042090:CDS |
| GGGAAGAAGAACCTCTCGTT+CGG | 0.489882 | 1_1:-72669913 | None:intergenic |
| ATACCAGATGCGGTTCGGAC+AGG | 0.493768 | 1_1:-72669951 | None:intergenic |
| CTGTATTCAAAATCGGAGTC+AGG | 0.494942 | 1_1:-72670059 | None:intergenic |
| CGGCTATACCAGATGCGGTT+CGG | 0.497683 | 1_1:-72669956 | None:intergenic |
| GACAAACTTGCATAACCATA+AGG | 0.499535 | 1_1:-72673854 | None:intergenic |
| TACCTCTTGTCTGCACATAA+GGG | 0.499999 | 1_1:-72670256 | None:intergenic |
| ACAGTAACAAACCTTGAAAC+CGG | 0.500422 | 1_1:-72671652 | None:intergenic |
| TGTTTATGGAACTGCTGTAC+CGG | 0.502199 | 1_1:+72673113 | Msa0042090:CDS |
| TGAGGCCCAAGACAATAATC+TGG | 0.507785 | 1_1:-72671492 | None:intergenic |
| ATAGCTGTAATTTCTGGGGT+TGG | 0.510369 | 1_1:+72673509 | Msa0042090:CDS |
| CATAGTGCAACCAAGTGTAT+TGG | 0.511814 | 1_1:+72670558 | Msa0042090:CDS |
| GACCAGAGAAGCTGGAATCC+AGG | 0.513139 | 1_1:+72672521 | Msa0042090:CDS |
| CTAAAACAATTGAACTGTTG+AGG | 0.518053 | 1_1:-72669625 | None:intergenic |
| TTACAGAGAATGGGAGGTAA+TGG | 0.520779 | 1_1:-72673735 | None:intergenic |
| CTGCGACAAATGCTTTCTTA+CGG | 0.521566 | 1_1:+72671516 | Msa0042090:CDS |
| CGGTTCGGACAGGTTTGGCT+CGG | 0.522558 | 1_1:-72669941 | None:intergenic |
| CGCGTGCTTCTTCTTCACTA+AGG | 0.522784 | 1_1:-72669737 | None:intergenic |
| ATCGAGAATGGCAGCTGCAA+TGG | 0.524231 | 1_1:+72669659 | Msa0042090:exon |
| CGTGATTATATGGCAAATGA+AGG | 0.524748 | 1_1:+72672709 | Msa0042090:CDS |
| GGAGTTAGCATTAGCTCGAA+TGG | 0.524838 | 1_1:+72672467 | Msa0042090:CDS |
| AATTGTCATGCCAATACACT+TGG | 0.525376 | 1_1:-72670568 | None:intergenic |
| ACTCTATAAACACGCGTCCA+TGG | 0.528985 | 1_1:-72672387 | None:intergenic |
| AAGCCTCCTTTCCCAGGACG+TGG | 0.530868 | 1_1:-72669702 | None:intergenic |
| CGCCTCTTCTACATTGGCAG+AGG | 0.532370 | 1_1:-72670520 | None:intergenic |
| TGCCCTCACATTGCCACCAC+CGG | 0.535961 | 1_1:+72670008 | Msa0042090:CDS |
| AATTGGGATATGAGCTTGAA+GGG | 0.539350 | 1_1:+72673552 | Msa0042090:CDS |
| CGTCACCGCCTCTTCTACAT+TGG | 0.539713 | 1_1:-72670526 | None:intergenic |
| AGTACTAGCTTACAGAGAAT+GGG | 0.541451 | 1_1:-72673744 | None:intergenic |
| AAAGGAGGCTTTGAAGGCCA+CGG | 0.542814 | 1_1:+72669714 | Msa0042090:CDS |
| ATTAGCTCGAATGGAAGACT+TGG | 0.543470 | 1_1:+72672476 | Msa0042090:CDS |
| GTCATATGAAGATACACGGC+AGG | 0.543921 | 1_1:+72672747 | Msa0042090:CDS |
| AATGGCAGCTGCAATGGTGG+CGG | 0.544495 | 1_1:+72669665 | Msa0042090:exon |
| AACTTTCATGTCCCTTCCGG+CGG | 0.546193 | 1_1:+72670446 | Msa0042090:CDS |
| GAACTGCTGTACCGGTTCAT+GGG | 0.546285 | 1_1:+72673121 | Msa0042090:CDS |
| ATGAGCTCTGGAAAACTGGC+AGG | 0.546949 | 1_1:+72672179 | Msa0042090:CDS |
| GAACACTTACCCATAAGCTC+TGG | 0.547667 | 1_1:-72673072 | None:intergenic |
| ATGATGTCCACAAGTTGCTC+AGG | 0.548538 | 1_1:-72672339 | None:intergenic |
| AGTGAGCGATAGTATGAGGA+AGG | 0.549882 | 1_1:-72669213 | None:intergenic |
| AAGCCCATCTGCTCTAAACA+AGG | 0.553799 | 1_1:-72672116 | None:intergenic |
| CCAAATTAAACCAGAAGAGG+TGG | 0.554019 | 1_1:+72672675 | Msa0042090:CDS |
| TGACCTCTGGGGTTGAGAAA+GGG | 0.554088 | 1_1:+72672436 | Msa0042090:CDS |
| GAGAAACTGAATCAGTGATA+GGG | 0.554640 | 1_1:-72669239 | None:intergenic |
| CTGCTGTACCGGTTCATGGG+CGG | 0.556681 | 1_1:+72673124 | Msa0042090:CDS |
| GCTCTGGACAAGTAGTGTTA+CGG | 0.560794 | 1_1:-72673056 | None:intergenic |
| TGGTACGCTTCTTATGGAGG+AGG | 0.562129 | 1_1:+72673448 | Msa0042090:CDS |
| CACGTGAGAGGCCATACTTA+CGG | 0.562539 | 1_1:-72669851 | None:intergenic |
| GGGGTGCAGTCGTACTAGAG+AGG | 0.563895 | 1_1:-72669159 | None:intergenic |
| ATGGTCGACTTATCTCATAA+AGG | 0.565397 | 1_1:+72669789 | Msa0042090:CDS |
| CTTCTTCTTCACTAAGGCCG+TGG | 0.565667 | 1_1:-72669731 | None:intergenic |
| AAGGCACCACGTCCTGGGAA+AGG | 0.568173 | 1_1:+72669696 | Msa0042090:CDS |
| AAATTGGGATATGAGCTTGA+AGG | 0.569511 | 1_1:+72673551 | Msa0042090:CDS |
| GCGTGTTTATAGAGTTCAGC+GGG | 0.572842 | 1_1:+72672395 | Msa0042090:CDS |
| GGGTGCAGTCGTACTAGAGA+GGG | 0.573749 | 1_1:-72669158 | None:intergenic |
| TTATGGTACGCTTCTTATGG+AGG | 0.577351 | 1_1:+72673445 | Msa0042090:CDS |
| AACCCTTATGTGCAGACAAG+AGG | 0.578250 | 1_1:+72670254 | Msa0042090:CDS |
| ATGTCCACAAGTTGCTCAGG+TGG | 0.579117 | 1_1:-72672336 | None:intergenic |
| TCCTTGCAATGGTACCTCCA+TGG | 0.582174 | 1_1:+72672370 | Msa0042090:CDS |
| TTAGCTCGAATGGAAGACTT+GGG | 0.582791 | 1_1:+72672477 | Msa0042090:CDS |
| CGTAAGAAAGCATTTGTCGC+AGG | 0.582996 | 1_1:-72671515 | None:intergenic |
| TTATCCACCTGAGCAACTTG+TGG | 0.584183 | 1_1:+72672332 | Msa0042090:CDS |
| TTGTTACGACTGCGAAAATG+TGG | 0.584825 | 1_1:+72673033 | Msa0042090:CDS |
| CACCTCTGCCAATGTAGAAG+AGG | 0.586680 | 1_1:+72670518 | Msa0042090:CDS |
| CGAATTGCACGCATACTGGT+AGG | 0.587485 | 1_1:-72670107 | None:intergenic |
| GTTGAGTTTATATTAATGGG+TGG | 0.587623 | 1_1:+72670423 | Msa0042090:CDS |
| GTCCCTTGTTTAGAGCAGAT+GGG | 0.588499 | 1_1:+72672113 | Msa0042090:CDS |
| GTTGCTCGTGACACTAATAG+AGG | 0.589637 | 1_1:+72671582 | Msa0042090:CDS |
| TGCAGAGATTGTAAACTCCA+TGG | 0.589639 | 1_1:+72669770 | Msa0042090:CDS |
| TTCTGACAAGCTACAACACC+AGG | 0.589825 | 1_1:+72673149 | Msa0042090:CDS |
| CAAGTTTGGGTGCACGTGAG+AGG | 0.590702 | 1_1:-72669863 | None:intergenic |
| TCACCAAATTAAACCAGAAG+AGG | 0.591716 | 1_1:+72672672 | Msa0042090:CDS |
| GTGAGCGATAGTATGAGGAA+GGG | 0.592122 | 1_1:-72669212 | None:intergenic |
| GGAGTTTACAATCTCTGCAA+TGG | 0.592885 | 1_1:-72669766 | None:intergenic |
| ATGCCTGATCTTCCAAATGT+TGG | 0.593013 | 1_1:+72672049 | Msa0042090:CDS |
| ACACATGCTACAAAATTACA+TGG | 0.595514 | 1_1:-72673655 | None:intergenic |
| TACCCCACTCTTGTAATACG+TGG | 0.597220 | 1_1:+72672145 | Msa0042090:CDS |
| GAGAATGGCAGCTGCAATGG+TGG | 0.601590 | 1_1:+72669662 | Msa0042090:exon |
| AAGTAATCACGGTAATCCGC+CGG | 0.605266 | 1_1:-72670462 | None:intergenic |
| GAAAGCATTTGTCGCAGGTG+AGG | 0.608219 | 1_1:-72671510 | None:intergenic |
| GTTCCACGTATTACAAGAGT+GGG | 0.609518 | 1_1:-72672148 | None:intergenic |
| CTCTGCCAATGTAGAAGAGG+CGG | 0.613175 | 1_1:+72670521 | Msa0042090:CDS |
| GCACCACGTCCTGGGAAAGG+AGG | 0.613203 | 1_1:+72669699 | Msa0042090:CDS |
| TCCATGGAGGTACCATTGCA+AGG | 0.615787 | 1_1:-72672371 | None:intergenic |
| AGTTCCACGTATTACAAGAG+TGG | 0.617723 | 1_1:-72672149 | None:intergenic |
| GATTCCTTATAAAGTAATCA+CGG | 0.618997 | 1_1:-72670473 | None:intergenic |
| ATCACGGTAATCCGCCGGAA+GGG | 0.620461 | 1_1:-72670457 | None:intergenic |
| TTTAGGTCACAGTGTAGACA+AGG | 0.621502 | 1_1:+72670298 | Msa0042090:CDS |
| TACAGTACTCAGTCTTACAC+TGG | 0.624637 | 1_1:+72670077 | Msa0042090:CDS |
| TTACCGGTGGTGGCAATGTG+AGG | 0.625457 | 1_1:-72670011 | None:intergenic |
| AATCACGGTAATCCGCCGGA+AGG | 0.629594 | 1_1:-72670458 | None:intergenic |
| GGTGCAGTCGTACTAGAGAG+GGG | 0.631110 | 1_1:-72669157 | None:intergenic |
| CTTTGACATGACAGCAACAA+CGG | 0.631924 | 1_1:-72669976 | None:intergenic |
| GTACAGCAGTTCCATAAACA+TGG | 0.632941 | 1_1:-72673110 | None:intergenic |
| AATGCCTTTGGTGACCTCTG+GGG | 0.633442 | 1_1:+72672425 | Msa0042090:CDS |
| CTTATGTGCAGACAAGAGGT+AGG | 0.635365 | 1_1:+72670258 | Msa0042090:CDS |
| TAAGATAGCTGTAATTTCTG+GGG | 0.637498 | 1_1:+72673505 | Msa0042090:CDS |
| GAGAAACTTACAGTCGCGGA+GGG | 0.647128 | 1_1:-72669261 | None:intergenic |
| AGCCCATCTGCTCTAAACAA+GGG | 0.651856 | 1_1:-72672115 | None:intergenic |
| ATTTGTGTCTACTGCCCTGG+CGG | 0.653081 | 1_1:+72670035 | Msa0042090:CDS |
| GGAGAAACTTACAGTCGCGG+AGG | 0.653221 | 1_1:-72669262 | None:intergenic |
| AATCGGAGTCAGGACCGCCA+GGG | 0.654250 | 1_1:-72670049 | None:intergenic |
| CATAGCAAGGATCCTTGCAA+TGG | 0.656475 | 1_1:+72672359 | Msa0042090:CDS |
| GTATGCGTGCAATTCGAGCA+AGG | 0.657253 | 1_1:+72670114 | Msa0042090:CDS |
| AACTTGTGGACATCATAGCA+AGG | 0.660784 | 1_1:+72672346 | Msa0042090:CDS |
| TGTTGGTGTTGAAAGGGACA+TGG | 0.661690 | 1_1:+72672066 | Msa0042090:CDS |
| ATGGGAGAAACTTACAGTCG+CGG | 0.662195 | 1_1:-72669265 | None:intergenic |
| TCAACCCCAGAGGTCACCAA+AGG | 0.669888 | 1_1:-72672429 | None:intergenic |
| TTTATGAGATAAGTCGACCA+TGG | 0.671183 | 1_1:-72669787 | None:intergenic |
| TTCTTATGGAGGAGGCTGAG+CGG | 0.675562 | 1_1:+72673456 | Msa0042090:CDS |
| AACAACGGCTATACCAGATG+CGG | 0.676267 | 1_1:-72669961 | None:intergenic |
| TGGAGTCCAAAGCACTTACG+AGG | 0.676860 | 1_1:+72671557 | Msa0042090:CDS |
| GCAATGTGAGGGCAACGATG+AGG | 0.677142 | 1_1:-72669999 | None:intergenic |
| TCGTTCGGAGTCTGGTAACG+CGG | 0.679008 | 1_1:-72669898 | None:intergenic |
| ACTAGCTTACAGAGAATGGG+AGG | 0.681451 | 1_1:-72673741 | None:intergenic |
| GTTACCAGACTCCGAACGAG+AGG | 0.681695 | 1_1:+72669902 | Msa0042090:CDS |
| GGTTGAGAAAGGGAATCTAA+GGG | 0.683574 | 1_1:+72672446 | Msa0042090:CDS |
| TACCGGTGGTGGCAATGTGA+GGG | 0.686745 | 1_1:-72670010 | None:intergenic |
| ATTCCCTTTCTCAACCCCAG+AGG | 0.690536 | 1_1:-72672439 | None:intergenic |
| CGCGTGTTTATAGAGTTCAG+CGG | 0.704736 | 1_1:+72672394 | Msa0042090:CDS |
| GTAGACACAAATGTTACCGG+TGG | 0.711036 | 1_1:-72670024 | None:intergenic |
| CTATAAACACGCGTCCATGG+AGG | 0.720117 | 1_1:-72672384 | None:intergenic |
| GTGCAGTCGTACTAGAGAGG+GGG | 0.721984 | 1_1:-72669156 | None:intergenic |
| GCAGTCGTAACAAACCAACA+AGG | 0.760494 | 1_1:-72673023 | None:intergenic |
| TTCCACGTATTACAAGAGTG+GGG | 0.762155 | 1_1:-72672147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATGGATTTTTAT+GGG | - | chr1_1:72670835-72670854 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATGGATTTTTA+TGG | - | chr1_1:72670836-72670855 | None:intergenic | 10.0% |
| !!! | TTAAAAAAATCTGAAATAAA+CGG | + | chr1_1:72671012-72671031 | Msa0042090:intron | 10.0% |
| !!! | AGTAATAGTTTTTTTTTTAA+GGG | + | chr1_1:72673610-72673629 | Msa0042090:three_prime_UTR | 10.0% |
| !!! | AACAATTTACATTTTAATGA+CGG | - | chr1_1:72670162-72670181 | None:intergenic | 15.0% |
| !! | TATCATGATGTTATATTAAT+GGG | + | chr1_1:72670380-72670399 | Msa0042090:intron | 15.0% |
| !!! | AATCTAGAGATATTTTTTTT+AGG | + | chr1_1:72670768-72670787 | Msa0042090:intron | 15.0% |
| !!! | ATCTAGAGATATTTTTTTTA+GGG | + | chr1_1:72670769-72670788 | Msa0042090:intron | 15.0% |
| !!! | TAAAAAAATCTGAAATAAAC+GGG | + | chr1_1:72671013-72671032 | Msa0042090:intron | 15.0% |
| !!! | TATGTTTTTTTTTCTTTCTT+TGG | + | chr1_1:72671999-72672018 | Msa0042090:intron | 15.0% |
| !! | TTTGTTTACTAGTATTATTT+GGG | + | chr1_1:72672609-72672628 | Msa0042090:intron | 15.0% |
| !!! | TTACTGATTATTATTACATT+AGG | - | chr1_1:72673595-72673614 | None:intergenic | 15.0% |
| !!! | CAGTAATAGTTTTTTTTTTA+AGG | + | chr1_1:72673609-72673628 | Msa0042090:three_prime_UTR | 15.0% |
| !! | GAGGAATAAATAATAAATAG+AGG | + | chr1_1:72669456-72669475 | Msa0042090:intron | 20.0% |
| !!! | ATGTGTTCTATTTTACTTAA+AGG | - | chr1_1:72670197-72670216 | None:intergenic | 20.0% |
| !! | GTATCATGATGTTATATTAA+TGG | + | chr1_1:72670379-72670398 | Msa0042090:intron | 20.0% |
| !! | TCAACTTGCAAATAATTAAA+TGG | - | chr1_1:72670611-72670630 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTTCCAAAAACA+AGG | - | chr1_1:72670891-72670910 | None:intergenic | 20.0% |
| !!! | AAAAAAATCTGAAATAAACG+GGG | + | chr1_1:72671014-72671033 | Msa0042090:intron | 20.0% |
| !! | AAAAAAAACTTCTTTCACAA+GGG | - | chr1_1:72671224-72671243 | None:intergenic | 20.0% |
| !! | ATTAATAAGCAACTTTCTAT+AGG | + | chr1_1:72671868-72671887 | Msa0042090:intron | 20.0% |
| !!! | TTGTTTGTTAACATCATTTT+AGG | + | chr1_1:72672301-72672320 | Msa0042090:intron | 20.0% |
| !!! | CTTTGTTTACTAGTATTATT+TGG | + | chr1_1:72672608-72672627 | Msa0042090:intron | 20.0% |
| !! | TACAAAGAAATATAGAATGT+CGG | - | chr1_1:72672643-72672662 | None:intergenic | 20.0% |
| !! | ACAACAAAAATTTACACTAA+AGG | - | chr1_1:72672947-72672966 | None:intergenic | 20.0% |
| !! | AATATTCACATGTTCTTATT+GGG | + | chr1_1:72673217-72673236 | Msa0042090:intron | 20.0% |
| !! | ATCTTCTTGAATATTATACA+TGG | - | chr1_1:72673323-72673342 | None:intergenic | 20.0% |
| !!! | TATTTTAAATGCCTATCATA+AGG | + | chr1_1:72673688-72673707 | Msa0042090:three_prime_UTR | 20.0% |
| !! | ATGTAAGGTATATTAAAGTT+TGG | - | chr1_1:72673811-72673830 | None:intergenic | 20.0% |
| ! | ATGAAACAGTTATGAAAGAT+GGG | - | chr1_1:72669286-72669305 | None:intergenic | 25.0% |
| ! | AAAGTAAAATCAGTAAGAGA+CGG | - | chr1_1:72669322-72669341 | None:intergenic | 25.0% |
| !! | GATCTTTTTACCTTATTGTA+TGG | + | chr1_1:72669510-72669529 | Msa0042090:intron | 25.0% |
| !!! | AGTTCAATTGTTTTAGTGTT+TGG | + | chr1_1:72669632-72669651 | Msa0042090:five_prime_UTR | 25.0% |
| !!! | TCAGGTTGAGTTTATATTAA+TGG | + | chr1_1:72670419-72670438 | Msa0042090:intron | 25.0% |
| !! | CAGGTTGAGTTTATATTAAT+GGG | + | chr1_1:72670420-72670439 | Msa0042090:intron | 25.0% |
| ! | ATTACCGTGATTACTTTATA+AGG | + | chr1_1:72670469-72670488 | Msa0042090:CDS | 25.0% |
| ! | GATTCCTTATAAAGTAATCA+CGG | - | chr1_1:72670476-72670495 | None:intergenic | 25.0% |
| !!! | CTTTTGTGTAAAGTTTTGAA+TGG | + | chr1_1:72670640-72670659 | Msa0042090:intron | 25.0% |
| !!! | ATTTTTTTCCAAAAACAAGG+AGG | - | chr1_1:72670888-72670907 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | + | chr1_1:72670927-72670946 | Msa0042090:intron | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | + | chr1_1:72670928-72670947 | Msa0042090:intron | 25.0% |
| !! | AAAAAATCTGAAATAAACGG+GGG | + | chr1_1:72671015-72671034 | Msa0042090:intron | 25.0% |
| ! | GCTAAATATTATAGGGAAAA+TGG | + | chr1_1:72671037-72671056 | Msa0042090:intron | 25.0% |
| !!! | TATAGGGAAAATGGATTATA+TGG | + | chr1_1:72671046-72671065 | Msa0042090:intron | 25.0% |
| ! | GTTTAGTTACATGAATCAAA+TGG | - | chr1_1:72671199-72671218 | None:intergenic | 25.0% |
| ! | AAAAAAACTTCTTTCACAAG+GGG | - | chr1_1:72671223-72671242 | None:intergenic | 25.0% |
| ! | GAAAAAAAACTTCTTTCACA+AGG | - | chr1_1:72671225-72671244 | None:intergenic | 25.0% |
| ! | CATATCAATGATTATATTCG+TGG | + | chr1_1:72671380-72671399 | Msa0042090:intron | 25.0% |
| !! | TTTTAAACACATTCAGCATA+AGG | - | chr1_1:72671733-72671752 | None:intergenic | 25.0% |
| ! | TCATTATATTTGTCTAGACA+AGG | + | chr1_1:72671815-72671834 | Msa0042090:intron | 25.0% |
| !!! | CATATTACTTTCTAGTTGTT+TGG | + | chr1_1:72671891-72671910 | Msa0042090:intron | 25.0% |
| ! | TTTCTATCTCATTATTCATC+AGG | + | chr1_1:72672255-72672274 | Msa0042090:intron | 25.0% |
| ! | CATTATTCATCAGGTTTAAA+AGG | + | chr1_1:72672264-72672283 | Msa0042090:intron | 25.0% |
| ! | ATAAAATTTCAAGACGAGAT+TGG | - | chr1_1:72672560-72672579 | None:intergenic | 25.0% |
| ! | GACATTCTATATTTCTTTGT+AGG | + | chr1_1:72672642-72672661 | Msa0042090:intron | 25.0% |
| !! | TTTTGTCATATGAAGATACA+CGG | + | chr1_1:72672743-72672762 | Msa0042090:CDS | 25.0% |
| ! | ATGATGATAGACAAAAAGAT+AGG | - | chr1_1:72672810-72672829 | None:intergenic | 25.0% |
| !!! | CCTTCTTTATTTTGAATCAA+GGG | + | chr1_1:72672899-72672918 | Msa0042090:intron | 25.0% |
| !!! | CTTCTTTATTTTGAATCAAG+GGG | + | chr1_1:72672900-72672919 | Msa0042090:intron | 25.0% |
| ! | GAATATTCACATGTTCTTAT+TGG | + | chr1_1:72673216-72673235 | Msa0042090:intron | 25.0% |
| ! | GAATATTCACATGTTCTTAT+TGG | + | chr1_1:72673216-72673235 | Msa0042090:intron | 25.0% |
| ! | AATATTCAAGAAGATACCTA+TGG | + | chr1_1:72673328-72673347 | Msa0042090:intron | 25.0% |
| !!! | CAATAATTTTGGTCAAAAGT+AGG | - | chr1_1:72673416-72673435 | None:intergenic | 25.0% |
| ! | TGACCAAAATTATTGTTAAC+AGG | + | chr1_1:72673421-72673440 | Msa0042090:intron | 25.0% |
| ! | GACCAAAATTATTGTTAACA+GGG | + | chr1_1:72673422-72673441 | Msa0042090:intron | 25.0% |
| !! | AACCCTGTTAACAATAATTT+TGG | - | chr1_1:72673427-72673446 | None:intergenic | 25.0% |
| ! | AATTATTGTTAACAGGGTTA+TGG | + | chr1_1:72673428-72673447 | Msa0042090:intron | 25.0% |
| ! | ATTAGGTATTTCATCATGTA+AGG | - | chr1_1:72673578-72673597 | None:intergenic | 25.0% |
| ! | AAATATGAATGCCTTATGAT+AGG | - | chr1_1:72673702-72673721 | None:intergenic | 25.0% |
| TACTTTCAGTATTAGGGTTT+GGG | - | chr1_1:72669188-72669207 | None:intergenic | 30.0% | |
| CATGAAACAGTTATGAAAGA+TGG | - | chr1_1:72669287-72669306 | None:intergenic | 30.0% | |
| TGAGATCTAACCATACAATA+AGG | - | chr1_1:72669523-72669542 | None:intergenic | 30.0% | |
| !! | AACTGTTGAGGATTTTGTTT+CGG | - | chr1_1:72669616-72669635 | None:intergenic | 30.0% |
| CTAAAACAATTGAACTGTTG+AGG | - | chr1_1:72669628-72669647 | None:intergenic | 30.0% | |
| ! | CTGAGTACTGTATTCAAAAT+CGG | - | chr1_1:72670069-72670088 | None:intergenic | 30.0% |
| ! | ACTTTGTTTGCTTTGGATTT+AGG | + | chr1_1:72670228-72670247 | Msa0042090:intron | 30.0% |
| ! | TGATGTTATATTAATGGGTG+TGG | + | chr1_1:72670385-72670404 | Msa0042090:intron | 30.0% |
| GTTGAGTTTATATTAATGGG+TGG | + | chr1_1:72670423-72670442 | Msa0042090:CDS | 30.0% | |
| CTTGCAAATAATTAAATGGC+AGG | - | chr1_1:72670607-72670626 | None:intergenic | 30.0% | |
| !!! | TTGTGTAAAGTTTTGAATGG+AGG | + | chr1_1:72670643-72670662 | Msa0042090:intron | 30.0% |
| !! | AATGGATTTTTATGGGTTGT+AGG | - | chr1_1:72670828-72670847 | None:intergenic | 30.0% |
| CCCTAAAATGAAAAGCTATT+AGG | - | chr1_1:72670931-72670950 | None:intergenic | 30.0% | |
| ACCAAGAAAAACTACAAATC+AGG | + | chr1_1:72671107-72671126 | Msa0042090:intron | 30.0% | |
| TACAAATCAGGCTAATAAGA+TGG | + | chr1_1:72671119-72671138 | Msa0042090:intron | 30.0% | |
| CGTAACATCAAATTTAGTAC+AGG | - | chr1_1:72671291-72671310 | None:intergenic | 30.0% | |
| AACTACACCAGTTTATATCA+TGG | - | chr1_1:72671324-72671343 | None:intergenic | 30.0% | |
| ! | TGGTGTAGTTATGATTTTCT+AGG | + | chr1_1:72671334-72671353 | Msa0042090:intron | 30.0% |
| ! | GGTGTAGTTATGATTTTCTA+GGG | + | chr1_1:72671335-72671354 | Msa0042090:intron | 30.0% |
| ACCTTTAAGTAAACGTTAAC+AGG | + | chr1_1:72671405-72671424 | Msa0042090:intron | 30.0% | |
| ACCTGTTAACGTTTACTTAA+AGG | - | chr1_1:72671409-72671428 | None:intergenic | 30.0% | |
| TAAGTGCAAAACTTGATAAG+CGG | - | chr1_1:72671458-72671477 | None:intergenic | 30.0% | |
| ! | GTTTTGCACTTAAATTTCTC+AGG | + | chr1_1:72671466-72671485 | Msa0042090:intron | 30.0% |
| ! | ATTTGAAAGGGGTACAATTA+GGG | - | chr1_1:72671921-72671940 | None:intergenic | 30.0% |
| ! | TATTTGAAAGGGGTACAATT+AGG | - | chr1_1:72671922-72671941 | None:intergenic | 30.0% |
| ! | TGCCTAGTTTGTATTTGAAA+GGG | - | chr1_1:72671933-72671952 | None:intergenic | 30.0% |
| AGGGACTTTCAAAAAATTCT+CGG | - | chr1_1:72672099-72672118 | None:intergenic | 30.0% | |
| ! | GTTTAAAATGTCGTGATGTT+CGG | + | chr1_1:72672499-72672518 | Msa0042090:CDS | 30.0% |
| !! | ATTGGTTCTAGATAATTACC+TGG | - | chr1_1:72672542-72672561 | None:intergenic | 30.0% |
| AAGAAATATAGAATGTCGGT+TGG | - | chr1_1:72672639-72672658 | None:intergenic | 30.0% | |
| ATTATATGGCAAATGAAGGT+TGG | + | chr1_1:72672713-72672732 | Msa0042090:CDS | 30.0% | |
| TTATATGGCAAATGAAGGTT+GGG | + | chr1_1:72672714-72672733 | Msa0042090:CDS | 30.0% | |
| !!! | GCCTTCTTTATTTTGAATCA+AGG | + | chr1_1:72672898-72672917 | Msa0042090:intron | 30.0% |
| CCCTTGATTCAAAATAAAGA+AGG | - | chr1_1:72672902-72672921 | None:intergenic | 30.0% | |
| TTTACACTAAAGGTAAGAAC+AGG | - | chr1_1:72672937-72672956 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTTGATGAAACA+TGG | + | chr1_1:72672960-72672979 | Msa0042090:intron | 30.0% |
| ACTAAGATAGCTGTAATTTC+TGG | + | chr1_1:72673503-72673522 | Msa0042090:CDS | 30.0% | |
| CTAAGATAGCTGTAATTTCT+GGG | + | chr1_1:72673504-72673523 | Msa0042090:CDS | 30.0% | |
| TAAGATAGCTGTAATTTCTG+GGG | + | chr1_1:72673505-72673524 | Msa0042090:CDS | 30.0% | |
| ! | ATCCCAATTTTCTGTAGTAA+TGG | - | chr1_1:72673541-72673560 | None:intergenic | 30.0% |
| ACACATGCTACAAAATTACA+TGG | - | chr1_1:72673658-72673677 | None:intergenic | 30.0% | |
| ! | TGTAATTTTGTAGCATGTGT+TGG | + | chr1_1:72673658-72673677 | Msa0042090:three_prime_UTR | 30.0% |
| !! | GCATTCATATTTTTGCTCAA+AGG | + | chr1_1:72673710-72673729 | Msa0042090:three_prime_UTR | 30.0% |
| AGTACTGCAAATTAAGAAAC+TGG | + | chr1_1:72673761-72673780 | Msa0042090:three_prime_UTR | 30.0% | |
| GTACTTTCAGTATTAGGGTT+TGG | - | chr1_1:72669189-72669208 | None:intergenic | 35.0% | |
| GGACAGTACTTTCAGTATTA+GGG | - | chr1_1:72669194-72669213 | None:intergenic | 35.0% | |
| GAGAAACTGAATCAGTGATA+GGG | - | chr1_1:72669242-72669261 | None:intergenic | 35.0% | |
| !! | TAAAGTGTGTGTTGTTTGTG+AGG | + | chr1_1:72669437-72669456 | Msa0042090:intron | 35.0% |
| !! | AATCGTTCTCATTTTGCTGT+AGG | + | chr1_1:72669551-72669570 | Msa0042090:intron | 35.0% |
| !! | ATCGTTCTCATTTTGCTGTA+GGG | + | chr1_1:72669552-72669571 | Msa0042090:intron | 35.0% |
| !! | ACTGTTGAGGATTTTGTTTC+GGG | - | chr1_1:72669615-72669634 | None:intergenic | 35.0% |
| TTTATGAGATAAGTCGACCA+TGG | - | chr1_1:72669790-72669809 | None:intergenic | 35.0% | |
| ! | ATGGTCGACTTATCTCATAA+AGG | + | chr1_1:72669789-72669808 | Msa0042090:CDS | 35.0% |
| GCAATCATCTCAACAAGTTT+GGG | - | chr1_1:72669879-72669898 | None:intergenic | 35.0% | |
| ! | TTCGATGACTTTGTTTGCTT+TGG | + | chr1_1:72670221-72670240 | Msa0042090:intron | 35.0% |
| ATTGATCAGCTTAAGCGTTT+AGG | + | chr1_1:72670281-72670300 | Msa0042090:CDS | 35.0% | |
| AAGTGCATGAAATATACGTG+CGG | + | chr1_1:72670354-72670373 | Msa0042090:intron | 35.0% | |
| !! | GGTGTGGTTTATTGTTTTTC+AGG | + | chr1_1:72670401-72670420 | Msa0042090:intron | 35.0% |
| AATCTTCATGATGCTTTGTC+TGG | + | chr1_1:72670492-72670511 | Msa0042090:CDS | 35.0% | |
| AATTGTCATGCCAATACACT+TGG | - | chr1_1:72670571-72670590 | None:intergenic | 35.0% | |
| !! | GCTTTGGACTTTTTGGTATT+TGG | + | chr1_1:72670669-72670688 | Msa0042090:intron | 35.0% |
| ! | TTTTGGTATTTGGACATGTG+AGG | + | chr1_1:72670679-72670698 | Msa0042090:intron | 35.0% |
| !!! | ATGTGTTACCTCCTTGTTTT+TGG | + | chr1_1:72670877-72670896 | Msa0042090:intron | 35.0% |
| AAACGGGGGCTAAATATTAT+AGG | + | chr1_1:72671029-72671048 | Msa0042090:intron | 35.0% | |
| AACGGGGGCTAAATATTATA+GGG | + | chr1_1:72671030-72671049 | Msa0042090:intron | 35.0% | |
| !! | GCCTGATTTGTAGTTTTTCT+TGG | - | chr1_1:72671111-72671130 | None:intergenic | 35.0% |
| ! | TCAGGCTAATAAGATGGATT+TGG | + | chr1_1:72671125-72671144 | Msa0042090:intron | 35.0% |
| TGATTCACAAGAAGACATTG+CGG | + | chr1_1:72671171-72671190 | Msa0042090:intron | 35.0% | |
| ACTGTCTCCATGATATAAAC+TGG | + | chr1_1:72671314-72671333 | Msa0042090:intron | 35.0% | |
| TTGCACTTAAATTTCTCAGG+AGG | + | chr1_1:72671469-72671488 | Msa0042090:intron | 35.0% | |
| ACAGTAACAAACCTTGAAAC+CGG | - | chr1_1:72671655-72671674 | None:intergenic | 35.0% | |
| ATATGGGAGAATAGTTTGAC+AGG | - | chr1_1:72671707-72671726 | None:intergenic | 35.0% | |
| ! | ATTCAGCATAAGGAGCATAT+GGG | - | chr1_1:72671723-72671742 | None:intergenic | 35.0% |
| TTCATTACAACTTTGAGTGC+AGG | - | chr1_1:72671773-72671792 | None:intergenic | 35.0% | |
| CAAGCTTCAGATAGATTCAT+TGG | + | chr1_1:72671839-72671858 | Msa0042090:intron | 35.0% | |
| ACCCCTTTCAAATACAAACT+AGG | + | chr1_1:72671928-72671947 | Msa0042090:intron | 35.0% | |
| ! | GCCTAGTTTGTATTTGAAAG+GGG | - | chr1_1:72671932-72671951 | None:intergenic | 35.0% |
| ! | CTGCCTAGTTTGTATTTGAA+AGG | - | chr1_1:72671934-72671953 | None:intergenic | 35.0% |
| TCAAATACAAACTAGGCAGT+AGG | + | chr1_1:72671935-72671954 | Msa0042090:intron | 35.0% | |
| !!! | CTTTCTTTGGCTTTTGCTTT+AGG | + | chr1_1:72672012-72672031 | Msa0042090:intron | 35.0% |
| !! | TTCCAAATGTTGGTGTTGAA+AGG | + | chr1_1:72672059-72672078 | Msa0042090:CDS | 35.0% |
| !! | TCCAAATGTTGGTGTTGAAA+GGG | + | chr1_1:72672060-72672079 | Msa0042090:CDS | 35.0% |
| AAGAACGCATCACATTAGAT+AGG | - | chr1_1:72672207-72672226 | None:intergenic | 35.0% | |
| TCACCAAATTAAACCAGAAG+AGG | + | chr1_1:72672672-72672691 | Msa0042090:CDS | 35.0% | |
| ACTTGTTCGTCGTGATTATA+TGG | + | chr1_1:72672699-72672718 | Msa0042090:CDS | 35.0% | |
| CGTGATTATATGGCAAATGA+AGG | + | chr1_1:72672709-72672728 | Msa0042090:CDS | 35.0% | |
| AAGATAGGCACTAATAAGAG+AGG | - | chr1_1:72672795-72672814 | None:intergenic | 35.0% | |
| ! | ATTAGCATGACAGTTTTACC+TGG | - | chr1_1:72673170-72673189 | None:intergenic | 35.0% |
| CTTATTGGATACTATCTGAG+TGG | + | chr1_1:72673254-72673273 | Msa0042090:intron | 35.0% | |
| TACAATGAGGGACATGTTAT+TGG | - | chr1_1:72673383-72673402 | None:intergenic | 35.0% | |
| TTGGTCAAAAGTAGGTCAAT+TGG | - | chr1_1:72673408-72673427 | None:intergenic | 35.0% | |
| ACGCCATTACTACAGAAAAT+TGG | + | chr1_1:72673535-72673554 | Msa0042090:CDS | 35.0% | |
| CGCCATTACTACAGAAAATT+GGG | + | chr1_1:72673536-72673555 | Msa0042090:CDS | 35.0% | |
| AAATTGGGATATGAGCTTGA+AGG | + | chr1_1:72673551-72673570 | Msa0042090:CDS | 35.0% | |
| AATTGGGATATGAGCTTGAA+GGG | + | chr1_1:72673552-72673571 | Msa0042090:CDS | 35.0% | |
| ! | AGTACTAGCTTACAGAGAAT+GGG | - | chr1_1:72673747-72673766 | None:intergenic | 35.0% |
| TGTATACAACAGCGAATGTA+AGG | - | chr1_1:72673826-72673845 | None:intergenic | 35.0% | |
| GACAAACTTGCATAACCATA+AGG | - | chr1_1:72673857-72673876 | None:intergenic | 35.0% | |
| CAAGTTGCAACAATGCTATA+TGG | - | chr1_1:72673879-72673898 | None:intergenic | 35.0% | |
| ! | TCAGTATTAGGGTTTGGGTT+GGG | - | chr1_1:72669183-72669202 | None:intergenic | 40.0% |
| TTCAGTATTAGGGTTTGGGT+TGG | - | chr1_1:72669184-72669203 | None:intergenic | 40.0% | |
| GGGACAGTACTTTCAGTATT+AGG | - | chr1_1:72669195-72669214 | None:intergenic | 40.0% | |
| GGAGAAACTGAATCAGTGAT+AGG | - | chr1_1:72669243-72669262 | None:intergenic | 40.0% | |
| ! | GTGTTTGGAGTTATCGAGAA+TGG | + | chr1_1:72669647-72669666 | Msa0042090:exon | 40.0% |
| GGAGTTTACAATCTCTGCAA+TGG | - | chr1_1:72669769-72669788 | None:intergenic | 40.0% | |
| TGCAGAGATTGTAAACTCCA+TGG | + | chr1_1:72669770-72669789 | Msa0042090:CDS | 40.0% | |
| !! | GAGCATTGAGATCAACTTTG+TGG | - | chr1_1:72669815-72669834 | None:intergenic | 40.0% |
| GGCAATCATCTCAACAAGTT+TGG | - | chr1_1:72669880-72669899 | None:intergenic | 40.0% | |
| CTTTGACATGACAGCAACAA+CGG | - | chr1_1:72669979-72669998 | None:intergenic | 40.0% | |
| GCAGTAGACACAAATGTTAC+CGG | - | chr1_1:72670030-72670049 | None:intergenic | 40.0% | |
| CTGTATTCAAAATCGGAGTC+AGG | - | chr1_1:72670062-72670081 | None:intergenic | 40.0% | |
| TACAGTACTCAGTCTTACAC+TGG | + | chr1_1:72670077-72670096 | Msa0042090:CDS | 40.0% | |
| TACCTCTTGTCTGCACATAA+GGG | - | chr1_1:72670259-72670278 | None:intergenic | 40.0% | |
| TTTAGGTCACAGTGTAGACA+AGG | + | chr1_1:72670298-72670317 | Msa0042090:CDS | 40.0% | |
| CATAGTGCAACCAAGTGTAT+TGG | + | chr1_1:72670558-72670577 | Msa0042090:CDS | 40.0% | |
| !!! | TTTTGAATGGAGGAGTGCTT+TGG | + | chr1_1:72670653-72670672 | Msa0042090:intron | 40.0% |
| CTGCGACAAATGCTTTCTTA+CGG | + | chr1_1:72671516-72671535 | Msa0042090:CDS | 40.0% | |
| TTCTTACGGTTGTACACGAT+TGG | + | chr1_1:72671530-72671549 | Msa0042090:CDS | 40.0% | |
| !!! | TGTAGCTGATTGTTTTTGCC+TGG | + | chr1_1:72671620-72671639 | Msa0042090:CDS | 40.0% |
| GTGACAAAGTGCAGATTGAT+AGG | - | chr1_1:72671678-72671697 | None:intergenic | 40.0% | |
| ! | CATTCAGCATAAGGAGCATA+TGG | - | chr1_1:72671724-72671743 | None:intergenic | 40.0% |
| ATACAAACTAGGCAGTAGGT+TGG | + | chr1_1:72671939-72671958 | Msa0042090:intron | 40.0% | |
| ATGCCTGATCTTCCAAATGT+TGG | + | chr1_1:72672049-72672068 | Msa0042090:CDS | 40.0% | |
| ACACCAACATTTGGAAGATC+AGG | - | chr1_1:72672055-72672074 | None:intergenic | 40.0% | |
| TCCCTTTCAACACCAACATT+TGG | - | chr1_1:72672064-72672083 | None:intergenic | 40.0% | |
| TTCCACGTATTACAAGAGTG+GGG | - | chr1_1:72672150-72672169 | None:intergenic | 40.0% | |
| GTTCCACGTATTACAAGAGT+GGG | - | chr1_1:72672151-72672170 | None:intergenic | 40.0% | |
| AGTTCCACGTATTACAAGAG+TGG | - | chr1_1:72672152-72672171 | None:intergenic | 40.0% | |
| ACTCTTGTAATACGTGGAAC+TGG | + | chr1_1:72672151-72672170 | Msa0042090:CDS | 40.0% | |
| CTCTTGTAATACGTGGAACT+GGG | + | chr1_1:72672152-72672171 | Msa0042090:CDS | 40.0% | |
| !! | CTTTATGAGCTCTGGAAAAC+TGG | + | chr1_1:72672175-72672194 | Msa0042090:CDS | 40.0% |
| TTCATCAGGTTTAAAAGGCG+TGG | + | chr1_1:72672269-72672288 | Msa0042090:intron | 40.0% | |
| AACTTGTGGACATCATAGCA+AGG | + | chr1_1:72672346-72672365 | Msa0042090:CDS | 40.0% | |
| GGTTGAGAAAGGGAATCTAA+GGG | + | chr1_1:72672446-72672465 | Msa0042090:CDS | 40.0% | |
| ATTAGCTCGAATGGAAGACT+TGG | + | chr1_1:72672476-72672495 | Msa0042090:CDS | 40.0% | |
| TTAGCTCGAATGGAAGACTT+GGG | + | chr1_1:72672477-72672496 | Msa0042090:CDS | 40.0% | |
| !! | CCACCTCTTCTGGTTTAATT+TGG | - | chr1_1:72672678-72672697 | None:intergenic | 40.0% |
| CCAAATTAAACCAGAAGAGG+TGG | + | chr1_1:72672675-72672694 | Msa0042090:CDS | 40.0% | |
| GAAGGCAAAATATGCACAAC+AGG | - | chr1_1:72672884-72672903 | None:intergenic | 40.0% | |
| ATGAAACATGGCCATGACAT+TGG | + | chr1_1:72672972-72672991 | Msa0042090:intron | 40.0% | |
| TTGTTACGACTGCGAAAATG+TGG | + | chr1_1:72673033-72673052 | Msa0042090:CDS | 40.0% | |
| ACTACTTGTCCAGAGCTTAT+GGG | + | chr1_1:72673063-72673082 | Msa0042090:CDS | 40.0% | |
| GTACAGCAGTTCCATAAACA+TGG | - | chr1_1:72673113-72673132 | None:intergenic | 40.0% | |
| TGTTTATGGAACTGCTGTAC+CGG | + | chr1_1:72673113-72673132 | Msa0042090:CDS | 40.0% | |
| ! | TGAGTGGAATTGCTGAGTTT+TGG | + | chr1_1:72673270-72673289 | Msa0042090:intron | 40.0% |
| GCTGCATTGTGAATATCCAT+AGG | - | chr1_1:72673347-72673366 | None:intergenic | 40.0% | |
| ! | TTCACAATGCAGCTTTTCCA+AGG | + | chr1_1:72673354-72673373 | Msa0042090:intron | 40.0% |
| GGACATGTTATTGGTATCCT+TGG | - | chr1_1:72673374-72673393 | None:intergenic | 40.0% | |
| GGTCAATTGGAGTACAATGA+GGG | - | chr1_1:72673395-72673414 | None:intergenic | 40.0% | |
| AGGTCAATTGGAGTACAATG+AGG | - | chr1_1:72673396-72673415 | None:intergenic | 40.0% | |
| TTATGGTACGCTTCTTATGG+AGG | + | chr1_1:72673445-72673464 | Msa0042090:CDS | 40.0% | |
| !! | ATAGCTGTAATTTCTGGGGT+TGG | + | chr1_1:72673509-72673528 | Msa0042090:CDS | 40.0% |
| TTACAGAGAATGGGAGGTAA+TGG | - | chr1_1:72673738-72673757 | None:intergenic | 40.0% | |
| ! | CAGTACTAGCTTACAGAGAA+TGG | - | chr1_1:72673748-72673767 | None:intergenic | 40.0% |
| GTATACATGAGCTGACCTTA+TGG | + | chr1_1:72673839-72673858 | Msa0042090:three_prime_UTR | 40.0% | |
| !! | AGTATTAGGGTTTGGGTTGG+GGG | - | chr1_1:72669181-72669200 | None:intergenic | 45.0% |
| !! | CAGTATTAGGGTTTGGGTTG+GGG | - | chr1_1:72669182-72669201 | None:intergenic | 45.0% |
| GTGAGCGATAGTATGAGGAA+GGG | - | chr1_1:72669215-72669234 | None:intergenic | 45.0% | |
| AGTGAGCGATAGTATGAGGA+AGG | - | chr1_1:72669216-72669235 | None:intergenic | 45.0% | |
| GAAGAGTGAGCGATAGTATG+AGG | - | chr1_1:72669220-72669239 | None:intergenic | 45.0% | |
| ATGGGAGAAACTTACAGTCG+CGG | - | chr1_1:72669268-72669287 | None:intergenic | 45.0% | |
| AACAACGGCTATACCAGATG+CGG | - | chr1_1:72669964-72669983 | None:intergenic | 45.0% | |
| GTAGACACAAATGTTACCGG+TGG | - | chr1_1:72670027-72670046 | None:intergenic | 45.0% | |
| AACATTTGTGTCTACTGCCC+TGG | + | chr1_1:72670032-72670051 | Msa0042090:CDS | 45.0% | |
| AACCCTTATGTGCAGACAAG+AGG | + | chr1_1:72670254-72670273 | Msa0042090:CDS | 45.0% | |
| CTACCTCTTGTCTGCACATA+AGG | - | chr1_1:72670260-72670279 | None:intergenic | 45.0% | |
| CTTATGTGCAGACAAGAGGT+AGG | + | chr1_1:72670258-72670277 | Msa0042090:CDS | 45.0% | |
| GTCACAGTGTAGACAAGGTT+TGG | + | chr1_1:72670303-72670322 | Msa0042090:intron | 45.0% | |
| TGGAACTTTCATGTCCCTTC+CGG | + | chr1_1:72670443-72670462 | Msa0042090:CDS | 45.0% | |
| AAGTAATCACGGTAATCCGC+CGG | - | chr1_1:72670465-72670484 | None:intergenic | 45.0% | |
| !!! | GAGGAGTGCTTTGGACTTTT+TGG | + | chr1_1:72670662-72670681 | Msa0042090:intron | 45.0% |
| TGAGGAGAAGACTTGTAGCA+AGG | + | chr1_1:72670697-72670716 | Msa0042090:intron | 45.0% | |
| AGGAGGCCAGATTATTGTCT+TGG | + | chr1_1:72671486-72671505 | Msa0042090:intron | 45.0% | |
| GGAGGCCAGATTATTGTCTT+GGG | + | chr1_1:72671487-72671506 | Msa0042090:intron | 45.0% | |
| TGAGGCCCAAGACAATAATC+TGG | - | chr1_1:72671495-72671514 | None:intergenic | 45.0% | |
| !! | CGTAAGAAAGCATTTGTCGC+AGG | - | chr1_1:72671518-72671537 | None:intergenic | 45.0% |
| GGTTGTACACGATTGGAGAT+TGG | + | chr1_1:72671537-72671556 | Msa0042090:CDS | 45.0% | |
| CAACATCCTCGTAAGTGCTT+TGG | - | chr1_1:72671566-72671585 | None:intergenic | 45.0% | |
| GTTGCTCGTGACACTAATAG+AGG | + | chr1_1:72671582-72671601 | Msa0042090:CDS | 45.0% | |
| !! | TGTTGGTGTTGAAAGGGACA+TGG | + | chr1_1:72672066-72672085 | Msa0042090:CDS | 45.0% |
| ! | AGTCCCTTGTTTAGAGCAGA+TGG | + | chr1_1:72672112-72672131 | Msa0042090:CDS | 45.0% |
| ! | GTCCCTTGTTTAGAGCAGAT+GGG | + | chr1_1:72672113-72672132 | Msa0042090:CDS | 45.0% |
| ! | AGCCCATCTGCTCTAAACAA+GGG | - | chr1_1:72672118-72672137 | None:intergenic | 45.0% |
| ! | AAGCCCATCTGCTCTAAACA+AGG | - | chr1_1:72672119-72672138 | None:intergenic | 45.0% |
| TACCCCACTCTTGTAATACG+TGG | + | chr1_1:72672145-72672164 | Msa0042090:CDS | 45.0% | |
| TTATCCACCTGAGCAACTTG+TGG | + | chr1_1:72672332-72672351 | Msa0042090:CDS | 45.0% | |
| ATGATGTCCACAAGTTGCTC+AGG | - | chr1_1:72672342-72672361 | None:intergenic | 45.0% | |
| CATAGCAAGGATCCTTGCAA+TGG | + | chr1_1:72672359-72672378 | Msa0042090:CDS | 45.0% | |
| ACTCTATAAACACGCGTCCA+TGG | - | chr1_1:72672390-72672409 | None:intergenic | 45.0% | |
| CGCGTGTTTATAGAGTTCAG+CGG | + | chr1_1:72672394-72672413 | Msa0042090:CDS | 45.0% | |
| GCGTGTTTATAGAGTTCAGC+GGG | + | chr1_1:72672395-72672414 | Msa0042090:CDS | 45.0% | |
| GGGTTGAGAAAGGGAATCTA+AGG | + | chr1_1:72672445-72672464 | Msa0042090:CDS | 45.0% | |
| GGAGTTAGCATTAGCTCGAA+TGG | + | chr1_1:72672467-72672486 | Msa0042090:CDS | 45.0% | |
| GTCATATGAAGATACACGGC+AGG | + | chr1_1:72672747-72672766 | Msa0042090:CDS | 45.0% | |
| TAAGAGAGGCTGAGGAAAGA+AGG | - | chr1_1:72672781-72672800 | None:intergenic | 45.0% | |
| ! | GTGTGAGTCTAGTTTGTAGC+TGG | + | chr1_1:72672850-72672869 | Msa0042090:intron | 45.0% |
| AGACAGCACAACCAATGTCA+TGG | - | chr1_1:72672986-72673005 | None:intergenic | 45.0% | |
| CTTGAGCAGGATATCCTTGT+TGG | + | chr1_1:72673009-72673028 | Msa0042090:intron | 45.0% | |
| GCAGTCGTAACAAACCAACA+AGG | - | chr1_1:72673026-72673045 | None:intergenic | 45.0% | |
| ! | GCTCTGGACAAGTAGTGTTA+CGG | - | chr1_1:72673059-72673078 | None:intergenic | 45.0% |
| CACTACTTGTCCAGAGCTTA+TGG | + | chr1_1:72673062-72673081 | Msa0042090:CDS | 45.0% | |
| GAACACTTACCCATAAGCTC+TGG | - | chr1_1:72673075-72673094 | None:intergenic | 45.0% | |
| GTTCGTGAGCTCCATGTTTA+TGG | + | chr1_1:72673099-72673118 | Msa0042090:CDS | 45.0% | |
| TTCTGACAAGCTACAACACC+AGG | + | chr1_1:72673149-72673168 | Msa0042090:CDS | 45.0% | |
| GGGTTATGGTACGCTTCTTA+TGG | + | chr1_1:72673442-72673461 | Msa0042090:intron | 45.0% | |
| ! | ACTAGCTTACAGAGAATGGG+AGG | - | chr1_1:72673744-72673763 | None:intergenic | 45.0% |
| !!! | AACTTTTTTTTTTTTTTAAA+TGG | - | chr1_1:72670846-72670865 | None:intergenic | 5.0% |
| GAGAAACTTACAGTCGCGGA+GGG | - | chr1_1:72669264-72669283 | None:intergenic | 50.0% | |
| AACAGCAACTGCTGCAGCAA+TGG | - | chr1_1:72669392-72669411 | None:intergenic | 50.0% | |
| ATCGAGAATGGCAGCTGCAA+TGG | + | chr1_1:72669659-72669678 | Msa0042090:exon | 50.0% | |
| !! | AATGGTGGCGGAGGCAAAAA+AGG | + | chr1_1:72669677-72669696 | Msa0042090:CDS | 50.0% |
| !! | CAAAAAAGGCACCACGTCCT+GGG | + | chr1_1:72669691-72669710 | Msa0042090:CDS | 50.0% |
| !! | AAAGGAGGCTTTGAAGGCCA+CGG | + | chr1_1:72669714-72669733 | Msa0042090:CDS | 50.0% |
| CTTCTTCTTCACTAAGGCCG+TGG | - | chr1_1:72669734-72669753 | None:intergenic | 50.0% | |
| CGCGTGCTTCTTCTTCACTA+AGG | - | chr1_1:72669740-72669759 | None:intergenic | 50.0% | |
| CACGTGAGAGGCCATACTTA+CGG | - | chr1_1:72669854-72669873 | None:intergenic | 50.0% | |
| GGGAAGAAGAACCTCTCGTT+CGG | - | chr1_1:72669916-72669935 | None:intergenic | 50.0% | |
| !! | ACAGGTTTGGCTCGGAGTTT+GGG | - | chr1_1:72669936-72669955 | None:intergenic | 50.0% |
| GACACAAATGTTACCGGTGG+TGG | - | chr1_1:72670024-72670043 | None:intergenic | 50.0% | |
| ATTTGTGTCTACTGCCCTGG+CGG | + | chr1_1:72670035-72670054 | Msa0042090:CDS | 50.0% | |
| CGAATTGCACGCATACTGGT+AGG | - | chr1_1:72670110-72670129 | None:intergenic | 50.0% | |
| TGCTCGAATTGCACGCATAC+TGG | - | chr1_1:72670114-72670133 | None:intergenic | 50.0% | |
| GTATGCGTGCAATTCGAGCA+AGG | + | chr1_1:72670114-72670133 | Msa0042090:CDS | 50.0% | |
| AACTTTCATGTCCCTTCCGG+CGG | + | chr1_1:72670446-72670465 | Msa0042090:CDS | 50.0% | |
| CACCTCTGCCAATGTAGAAG+AGG | + | chr1_1:72670518-72670537 | Msa0042090:CDS | 50.0% | |
| CTCTGCCAATGTAGAAGAGG+CGG | + | chr1_1:72670521-72670540 | Msa0042090:CDS | 50.0% | |
| !! | GAAAGCATTTGTCGCAGGTG+AGG | - | chr1_1:72671513-72671532 | None:intergenic | 50.0% |
| ! | TGGAGTCCAAAGCACTTACG+AGG | + | chr1_1:72671557-72671576 | Msa0042090:CDS | 50.0% |
| ! | TTTTGCCTGGCTAAAGACGC+CGG | + | chr1_1:72671633-72671652 | Msa0042090:CDS | 50.0% |
| ! | GAACTGGGCTTTATGAGCTC+TGG | + | chr1_1:72672167-72672186 | Msa0042090:CDS | 50.0% |
| !! | ATGAGCTCTGGAAAACTGGC+AGG | + | chr1_1:72672179-72672198 | Msa0042090:CDS | 50.0% |
| ATGTCCACAAGTTGCTCAGG+TGG | - | chr1_1:72672339-72672358 | None:intergenic | 50.0% | |
| TCCTTGCAATGGTACCTCCA+TGG | + | chr1_1:72672370-72672389 | Msa0042090:CDS | 50.0% | |
| !! | TCCATGGAGGTACCATTGCA+AGG | - | chr1_1:72672374-72672393 | None:intergenic | 50.0% |
| CTATAAACACGCGTCCATGG+AGG | - | chr1_1:72672387-72672406 | None:intergenic | 50.0% | |
| GCGGGATATTCCAATGCCTT+TGG | + | chr1_1:72672413-72672432 | Msa0042090:CDS | 50.0% | |
| ! | CAATGCCTTTGGTGACCTCT+GGG | + | chr1_1:72672424-72672443 | Msa0042090:CDS | 50.0% |
| ! | AATGCCTTTGGTGACCTCTG+GGG | + | chr1_1:72672425-72672444 | Msa0042090:CDS | 50.0% |
| !! | TGACCTCTGGGGTTGAGAAA+GGG | + | chr1_1:72672436-72672455 | Msa0042090:CDS | 50.0% |
| ATTCCCTTTCTCAACCCCAG+AGG | - | chr1_1:72672442-72672461 | None:intergenic | 50.0% | |
| TACCTGGATTCCAGCTTCTC+TGG | - | chr1_1:72672526-72672545 | None:intergenic | 50.0% | |
| CGAACAAGTTCCACCTCTTC+TGG | - | chr1_1:72672688-72672707 | None:intergenic | 50.0% | |
| GGCACTAATAAGAGAGGCTG+AGG | - | chr1_1:72672789-72672808 | None:intergenic | 50.0% | |
| ! | GTCTAGTTTGTAGCTGGCAC+TGG | + | chr1_1:72672856-72672875 | Msa0042090:intron | 50.0% |
| TGTGCTGTCTTCTCTTGAGC+AGG | + | chr1_1:72672996-72673015 | Msa0042090:intron | 50.0% | |
| !! | GAACTGCTGTACCGGTTCAT+GGG | + | chr1_1:72673121-72673140 | Msa0042090:CDS | 50.0% |
| TGGTACGCTTCTTATGGAGG+AGG | + | chr1_1:72673448-72673467 | Msa0042090:CDS | 50.0% | |
| TTCTTATGGAGGAGGCTGAG+CGG | + | chr1_1:72673456-72673475 | Msa0042090:CDS | 50.0% | |
| GTGCAGTCGTACTAGAGAGG+GGG | - | chr1_1:72669159-72669178 | None:intergenic | 55.0% | |
| GGTGCAGTCGTACTAGAGAG+GGG | - | chr1_1:72669160-72669179 | None:intergenic | 55.0% | |
| GGGTGCAGTCGTACTAGAGA+GGG | - | chr1_1:72669161-72669180 | None:intergenic | 55.0% | |
| GGAGAAACTTACAGTCGCGG+AGG | - | chr1_1:72669265-72669284 | None:intergenic | 55.0% | |
| GAGAATGGCAGCTGCAATGG+TGG | + | chr1_1:72669662-72669681 | Msa0042090:exon | 55.0% | |
| AATGGCAGCTGCAATGGTGG+CGG | + | chr1_1:72669665-72669684 | Msa0042090:exon | 55.0% | |
| !! | GCAAAAAAGGCACCACGTCC+TGG | + | chr1_1:72669690-72669709 | Msa0042090:CDS | 55.0% |
| CCTTCAAAGCCTCCTTTCCC+AGG | - | chr1_1:72669711-72669730 | None:intergenic | 55.0% | |
| ! | CCTGGGAAAGGAGGCTTTGA+AGG | + | chr1_1:72669708-72669727 | Msa0042090:CDS | 55.0% |
| TCTGCTGCGTGCCGTAAGTA+TGG | + | chr1_1:72669840-72669859 | Msa0042090:CDS | 55.0% | |
| CAAGTTTGGGTGCACGTGAG+AGG | - | chr1_1:72669866-72669885 | None:intergenic | 55.0% | |
| ! | TCGTTCGGAGTCTGGTAACG+CGG | - | chr1_1:72669901-72669920 | None:intergenic | 55.0% |
| GTTACCAGACTCCGAACGAG+AGG | + | chr1_1:72669902-72669921 | Msa0042090:CDS | 55.0% | |
| AGAACCTCTCGTTCGGAGTC+TGG | - | chr1_1:72669909-72669928 | None:intergenic | 55.0% | |
| !! | GACAGGTTTGGCTCGGAGTT+TGG | - | chr1_1:72669937-72669956 | None:intergenic | 55.0% |
| ! | AGATGCGGTTCGGACAGGTT+TGG | - | chr1_1:72669949-72669968 | None:intergenic | 55.0% |
| AAACCTGTCCGAACCGCATC+TGG | + | chr1_1:72669948-72669967 | Msa0042090:CDS | 55.0% | |
| ! | ATACCAGATGCGGTTCGGAC+AGG | - | chr1_1:72669954-72669973 | None:intergenic | 55.0% |
| CGGCTATACCAGATGCGGTT+CGG | - | chr1_1:72669959-72669978 | None:intergenic | 55.0% | |
| GCAATGTGAGGGCAACGATG+AGG | - | chr1_1:72670002-72670021 | None:intergenic | 55.0% | |
| ! | TACCGGTGGTGGCAATGTGA+GGG | - | chr1_1:72670013-72670032 | None:intergenic | 55.0% |
| ! | TTACCGGTGGTGGCAATGTG+AGG | - | chr1_1:72670014-72670033 | None:intergenic | 55.0% |
| GCGTGCAATTCGAGCAAGGT+AGG | + | chr1_1:72670118-72670137 | Msa0042090:intron | 55.0% | |
| ATCACGGTAATCCGCCGGAA+GGG | - | chr1_1:72670460-72670479 | None:intergenic | 55.0% | |
| AATCACGGTAATCCGCCGGA+AGG | - | chr1_1:72670461-72670480 | None:intergenic | 55.0% | |
| CGCCTCTTCTACATTGGCAG+AGG | - | chr1_1:72670523-72670542 | None:intergenic | 55.0% | |
| CGTCACCGCCTCTTCTACAT+TGG | - | chr1_1:72670529-72670548 | None:intergenic | 55.0% | |
| TGAAACCGGCGTCTTTAGCC+AGG | - | chr1_1:72671641-72671660 | None:intergenic | 55.0% | |
| !! | GGCTAAAGACGCCGGTTTCA+AGG | + | chr1_1:72671641-72671660 | Msa0042090:CDS | 55.0% |
| ! | CCAGAGGTCACCAAAGGCAT+TGG | - | chr1_1:72672426-72672445 | None:intergenic | 55.0% |
| ! | CCAATGCCTTTGGTGACCTC+TGG | + | chr1_1:72672423-72672442 | Msa0042090:CDS | 55.0% |
| TCAACCCCAGAGGTCACCAA+AGG | - | chr1_1:72672432-72672451 | None:intergenic | 55.0% | |
| !! | GTGACCTCTGGGGTTGAGAA+AGG | + | chr1_1:72672435-72672454 | Msa0042090:CDS | 55.0% |
| GATGTTCGGACCAGAGAAGC+TGG | + | chr1_1:72672513-72672532 | Msa0042090:CDS | 55.0% | |
| GACCAGAGAAGCTGGAATCC+AGG | + | chr1_1:72672521-72672540 | Msa0042090:CDS | 55.0% | |
| !! | GGAACTGCTGTACCGGTTCA+TGG | + | chr1_1:72673120-72673139 | Msa0042090:CDS | 55.0% |
| TCAGAATCCCGCCCATGAAC+CGG | - | chr1_1:72673135-72673154 | None:intergenic | 55.0% | |
| GGGGTGCAGTCGTACTAGAG+AGG | - | chr1_1:72669162-72669181 | None:intergenic | 60.0% | |
| ! | AAGGCACCACGTCCTGGGAA+AGG | + | chr1_1:72669696-72669715 | Msa0042090:CDS | 60.0% |
| AAGCCTCCTTTCCCAGGACG+TGG | - | chr1_1:72669705-72669724 | None:intergenic | 60.0% | |
| ! | CGGTTCGGACAGGTTTGGCT+CGG | - | chr1_1:72669944-72669963 | None:intergenic | 60.0% |
| TGCCCTCACATTGCCACCAC+CGG | + | chr1_1:72670008-72670027 | Msa0042090:CDS | 60.0% | |
| AATCGGAGTCAGGACCGCCA+GGG | - | chr1_1:72670052-72670071 | None:intergenic | 60.0% | |
| AAATCGGAGTCAGGACCGCC+AGG | - | chr1_1:72670053-72670072 | None:intergenic | 60.0% | |
| !! | CTGCTGTACCGGTTCATGGG+CGG | + | chr1_1:72673124-72673143 | Msa0042090:CDS | 60.0% |
| !! | TGCTGTACCGGTTCATGGGC+GGG | + | chr1_1:72673125-72673144 | Msa0042090:CDS | 60.0% |
| GCACCACGTCCTGGGAAAGG+AGG | + | chr1_1:72669699-72669718 | Msa0042090:CDS | 65.0% | |
| !! | GGCAGCTGCAATGGTGGCGG+AGG | + | chr1_1:72669668-72669687 | Msa0042090:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72669128 | 72673899 | 72669128 | ID=Msa0042090;Name=Msa0042090 |
| chr1_1 | mRNA | 72669128 | 72673899 | 72669128 | ID=Msa0042090-mRNA-1;Parent=Msa0042090;Name=Msa0042090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=238|1|1|1|0.88|0.8|10|298|563 |
| chr1_1 | exon | 72669128 | 72669272 | 72669128 | ID=Msa0042090-mRNA-1:exon:24174;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72669573 | 72670135 | 72669573 | ID=Msa0042090-mRNA-1:exon:24175;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72670250 | 72670319 | 72670250 | ID=Msa0042090-mRNA-1:exon:24176;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72670423 | 72670595 | 72670423 | ID=Msa0042090-mRNA-1:exon:24177;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72671488 | 72671662 | 72671488 | ID=Msa0042090-mRNA-1:exon:24178;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72672034 | 72672200 | 72672034 | ID=Msa0042090-mRNA-1:exon:24179;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72672323 | 72672542 | 72672323 | ID=Msa0042090-mRNA-1:exon:24180;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72672664 | 72672768 | 72672664 | ID=Msa0042090-mRNA-1:exon:24181;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72673018 | 72673170 | 72673018 | ID=Msa0042090-mRNA-1:exon:24182;Parent=Msa0042090-mRNA-1 |
| chr1_1 | exon | 72673443 | 72673899 | 72673443 | ID=Msa0042090-mRNA-1:exon:24183;Parent=Msa0042090-mRNA-1 |
| chr1_1 | five_prime_UTR | 72669128 | 72669272 | 72669128 | ID=Msa0042090-mRNA-1:five_prime_utr;Parent=Msa0042090-mRNA-1 |
| chr1_1 | five_prime_UTR | 72669573 | 72669665 | 72669573 | ID=Msa0042090-mRNA-1:five_prime_utr;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72669666 | 72670135 | 72669666 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72670250 | 72670319 | 72670250 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72670423 | 72670595 | 72670423 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72671488 | 72671662 | 72671488 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72672034 | 72672200 | 72672034 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72672323 | 72672542 | 72672323 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72672664 | 72672768 | 72672664 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72673018 | 72673170 | 72673018 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | CDS | 72673443 | 72673601 | 72673443 | ID=Msa0042090-mRNA-1:cds;Parent=Msa0042090-mRNA-1 |
| chr1_1 | three_prime_UTR | 72673602 | 72673899 | 72673602 | ID=Msa0042090-mRNA-1:three_prime_utr;Parent=Msa0042090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
