Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0042310 | XP_003591030.2 | 91.117 | 349 | 30 | 1 | 131 | 479 | 28 | 375 | 0.0 | 611 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0042310 | sp|F4K5T4|STKLU_ARATH | 33.880 | 366 | 158 | 14 | 180 | 476 | 72 | 422 | 2.16e-42 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0042310 | TF | GeBP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0042310 | MtrunA17_Chr1g0191011 | 91.117 | 349 | 30 | 1 | 131 | 479 | 28 | 375 | 0.0 | 611 |
Msa0042310 | MtrunA17_Chr1g0191021 | 52.174 | 184 | 27 | 2 | 1 | 123 | 86 | 269 | 1.37e-41 | 152 |
Msa0042310 | MtrunA17_Chr1g0191021 | 31.944 | 360 | 179 | 12 | 161 | 475 | 32 | 370 | 3.58e-40 | 149 |
Msa0042310 | MtrunA17_Chr7g0273821 | 44.444 | 171 | 76 | 7 | 175 | 332 | 42 | 206 | 5.45e-28 | 115 |
Msa0042310 | MtrunA17_Chr7g0273821 | 68.627 | 51 | 16 | 0 | 7 | 57 | 106 | 156 | 1.92e-16 | 81.6 |
Msa0042310 | MtrunA17_Chr7g0273821 | 37.607 | 117 | 50 | 5 | 380 | 477 | 323 | 435 | 9.88e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0042310 | AT5G28040.2 | 33.880 | 366 | 158 | 14 | 180 | 476 | 72 | 422 | 2.20e-43 | 159 |
Msa0042310 | AT5G28040.1 | 33.880 | 366 | 158 | 14 | 180 | 476 | 72 | 422 | 2.20e-43 | 159 |
Msa0042310 | AT3G04930.2 | 38.650 | 163 | 81 | 5 | 180 | 330 | 78 | 233 | 1.30e-26 | 111 |
Msa0042310 | AT3G04930.2 | 59.259 | 54 | 20 | 2 | 6 | 57 | 132 | 185 | 2.38e-11 | 65.9 |
Msa0042310 | AT3G04930.1 | 38.650 | 163 | 81 | 5 | 180 | 330 | 78 | 233 | 2.94e-26 | 111 |
Msa0042310 | AT3G04930.1 | 59.259 | 54 | 20 | 2 | 6 | 57 | 132 | 185 | 2.62e-11 | 65.9 |
Msa0042310 | AT1G11510.2 | 39.394 | 99 | 53 | 2 | 235 | 332 | 109 | 201 | 1.19e-12 | 69.3 |
Msa0042310 | AT1G11510.1 | 39.394 | 99 | 53 | 2 | 235 | 332 | 138 | 230 | 1.22e-12 | 69.7 |
Msa0042310 | AT1G61730.1 | 31.206 | 141 | 88 | 5 | 191 | 331 | 114 | 245 | 2.03e-11 | 65.9 |
Find 107 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGAATTCCACGCTGAATT+TGG | 0.141013 | 1_1:+73105576 | None:intergenic |
TCAGTCAAATGAGCTGAATT+AGG | 0.184630 | 1_1:+73107863 | None:intergenic |
TCGAAATTTCCCACAAGATT+TGG | 0.203495 | 1_1:-73105441 | Msa0042310:CDS |
CGAAATTTCCCACAAGATTT+GGG | 0.213735 | 1_1:-73105440 | Msa0042310:CDS |
CTGAATTAGGGTTAGGGTTT+GGG | 0.227113 | 1_1:+73107876 | None:intergenic |
TCTTCTTATCATAATGATAT+TGG | 0.242509 | 1_1:-73108142 | Msa0042310:CDS |
CTTGTGGGAAATTTCGAAAA+TGG | 0.256771 | 1_1:+73105447 | None:intergenic |
AGAAGTTACGTAGGTTAAAA+AGG | 0.283260 | 1_1:-73105537 | Msa0042310:CDS |
TCAATAAGATCAGGACTTTC+AGG | 0.284560 | 1_1:+73105367 | None:intergenic |
AAGATTACTGTTACTCTTAT+CGG | 0.285919 | 1_1:+73107712 | None:intergenic |
ACCATTGTTGAAGGAACTAT+TGG | 0.296222 | 1_1:-73105170 | Msa0042310:CDS |
TGAACTGTTGAAGGGATATC+TGG | 0.305389 | 1_1:-73105674 | Msa0042310:CDS |
GACAATCATCATAATAATTC+AGG | 0.314652 | 1_1:-73107767 | Msa0042310:CDS |
ATTTCCTCATATTCTTCAAT+AGG | 0.320555 | 1_1:+73107902 | None:intergenic |
ATGGTTAAAACGGAGGATTT+TGG | 0.338805 | 1_1:-73105077 | Msa0042310:CDS |
CAGTCAAATGAGCTGAATTA+GGG | 0.341975 | 1_1:+73107864 | None:intergenic |
GCTGAATTAGGGTTAGGGTT+TGG | 0.352389 | 1_1:+73107875 | None:intergenic |
AAATGAGCTGAATTAGGGTT+AGG | 0.355729 | 1_1:+73107869 | None:intergenic |
TGACACCGACCATGACGTTT+TGG | 0.361992 | 1_1:-73105413 | Msa0042310:CDS |
TGGTCTTCATCCACATTGTA+TGG | 0.361996 | 1_1:+73105913 | None:intergenic |
TTGAATTCCACGCTGAATTT+GGG | 0.366580 | 1_1:+73105577 | None:intergenic |
GCCATGGCCACCGTCACAAC+GGG | 0.369780 | 1_1:+73105847 | None:intergenic |
GACGCACTGGGTGGCTCTAC+TGG | 0.372415 | 1_1:+73105139 | None:intergenic |
ATTGTGAAGAAACAGATAAA+AGG | 0.382017 | 1_1:-73105312 | Msa0042310:CDS |
CATTGTATGGACATAGAAAA+TGG | 0.389529 | 1_1:+73105926 | None:intergenic |
TGGTGAGAAACAAGACTTCA+TGG | 0.394662 | 1_1:+73105189 | None:intergenic |
AACAATAACTCAACTCCAAT+TGG | 0.394865 | 1_1:-73107929 | Msa0042310:CDS |
CATCATCCACATTGTCCATT+TGG | 0.402335 | 1_1:+73105959 | None:intergenic |
GCCGTGTTTGTGTCATCTGC+GGG | 0.417687 | 1_1:+73105820 | None:intergenic |
ATCGTTCTATGATCAAATTA+AGG | 0.428455 | 1_1:-73108119 | Msa0042310:CDS |
TAGTAGCATTGCCATTGTTC+CGG | 0.431642 | 1_1:+73105236 | None:intergenic |
TGAGGGATCTTGAAAGAAAT+CGG | 0.433564 | 1_1:+73105478 | None:intergenic |
TTGTTTCTCACCATTGTTGA+AGG | 0.439029 | 1_1:-73105179 | Msa0042310:CDS |
TAACAACATCGGCGACGCAC+TGG | 0.453222 | 1_1:+73105126 | None:intergenic |
AGATCAGGACTTTCAGGAAC+AGG | 0.454735 | 1_1:+73105373 | None:intergenic |
CAATGGGAATGTTGTCCATT+TGG | 0.457011 | 1_1:+73105893 | None:intergenic |
CCCCGTTGTGACGGTGGCCA+TGG | 0.457760 | 1_1:-73105848 | Msa0042310:CDS |
TCTTCAATAGGAACACCAAT+TGG | 0.467577 | 1_1:+73107914 | None:intergenic |
TGACAATGTTGAAGACCAAA+TGG | 0.469140 | 1_1:-73105974 | Msa0042310:CDS |
AATTCAGCGTGGAATTCAAC+AGG | 0.472407 | 1_1:-73105573 | Msa0042310:CDS |
AATGAGCTGAATTAGGGTTA+GGG | 0.478935 | 1_1:+73107870 | None:intergenic |
TGTTCCTATTGAAGAATATG+AGG | 0.484128 | 1_1:-73107906 | Msa0042310:CDS |
TCAGAAACGGCAAGTGCAAT+GGG | 0.486716 | 1_1:+73105877 | None:intergenic |
GGACGAGATTGAACTGTTGA+AGG | 0.488252 | 1_1:-73105683 | Msa0042310:CDS |
CTTCTTTAGTCCAGAGACAT+TGG | 0.490028 | 1_1:+73108215 | None:intergenic |
TATTGACAACGTTAAGATGA+AGG | 0.490932 | 1_1:-73105350 | Msa0042310:CDS |
AAGGAAACACAAGATGACTT+TGG | 0.497734 | 1_1:-73105518 | Msa0042310:CDS |
CAATGTGGATGAAGACCAAA+TGG | 0.497943 | 1_1:-73105908 | Msa0042310:CDS |
CTCGATTACAACGCCAATCG+TGG | 0.500789 | 1_1:-73108166 | Msa0042310:CDS |
ATCAGAAACGGCAAGTGCAA+TGG | 0.502613 | 1_1:+73105876 | None:intergenic |
TTAAACAATATCAGAGGCTA+TGG | 0.508336 | 1_1:-73105714 | Msa0042310:CDS |
TCAGATCAAGGCTAGGTTGG+AGG | 0.516669 | 1_1:-73105014 | Msa0042310:CDS |
TTGTGAAGAAACAGATAAAA+GGG | 0.517946 | 1_1:-73105311 | Msa0042310:CDS |
TCGAAAATGGCTTGTTCCTG+AGG | 0.518443 | 1_1:+73105460 | None:intergenic |
TTAACGTTGTCAATAAGATC+AGG | 0.519347 | 1_1:+73105358 | None:intergenic |
GGAGGTGTATTTGAATCGGT+TGG | 0.520311 | 1_1:-73105050 | Msa0042310:CDS |
GTCATTGCCCCAAATCTTGT+GGG | 0.523632 | 1_1:+73105432 | None:intergenic |
AACTGGAGGTGTATTTGAAT+CGG | 0.526700 | 1_1:-73105054 | Msa0042310:CDS |
CGAAAATGGCTTGTTCCTGA+GGG | 0.533678 | 1_1:+73105461 | None:intergenic |
GATTTCTTTCAAGATCCCTC+AGG | 0.542535 | 1_1:-73105476 | Msa0042310:CDS |
TGTCATTGCCCCAAATCTTG+TGG | 0.546121 | 1_1:+73105431 | None:intergenic |
AATCGGTTGGAGTTGTTGCA+AGG | 0.547050 | 1_1:-73105037 | Msa0042310:CDS |
GGCAACAAACACAGCCACCA+CGG | 0.547339 | 1_1:-73105800 | Msa0042310:CDS |
GACGAGATTACGATCTTGCA+AGG | 0.547606 | 1_1:-73108193 | Msa0042310:CDS |
CGCCGATGTTGTTATCGACA+AGG | 0.549485 | 1_1:-73105117 | Msa0042310:CDS |
AACAACATCGGCGACGCACT+GGG | 0.551267 | 1_1:+73105127 | None:intergenic |
TCCAATAGTTCCTTCAACAA+TGG | 0.555130 | 1_1:+73105169 | None:intergenic |
ATGGCAATGCTACTAGCATA+CGG | 0.556871 | 1_1:-73105228 | Msa0042310:CDS |
TGGCAATGCTACTAGCATAC+GGG | 0.563532 | 1_1:-73105227 | Msa0042310:CDS |
GGGATGAACAATGGTTAAAA+CGG | 0.566430 | 1_1:-73105087 | Msa0042310:CDS |
CTGGATTACATTAAACAGCA+TGG | 0.577356 | 1_1:-73105655 | Msa0042310:CDS |
TGCCGTGTTTGTGTCATCTG+CGG | 0.578987 | 1_1:+73105819 | None:intergenic |
AGCCATGGCCACCGTCACAA+CGG | 0.580091 | 1_1:+73105846 | None:intergenic |
CAATGTGGATGATGACGAAA+AGG | 0.583654 | 1_1:-73105950 | Msa0042310:CDS |
GACTTTGGACAAAGGCAAAG+AGG | 0.584181 | 1_1:-73105503 | Msa0042310:CDS |
TACGTAACTTCTCAACAAGC+TGG | 0.586441 | 1_1:+73105548 | None:intergenic |
GTTGTTGCAAGGTCAGATCA+AGG | 0.586461 | 1_1:-73105026 | Msa0042310:CDS |
TCAGAGGCTATGGACAAAGC+AGG | 0.591463 | 1_1:-73105704 | Msa0042310:CDS |
AGGTCAGATCAAGGCTAGGT+TGG | 0.595411 | 1_1:-73105017 | Msa0042310:CDS |
ATGATAAGAAGATCCACGAT+TGG | 0.603760 | 1_1:+73108153 | None:intergenic |
GAAATTTCCCACAAGATTTG+GGG | 0.610345 | 1_1:-73105439 | Msa0042310:CDS |
TGTTATCGACAAGGGAAGTG+AGG | 0.611514 | 1_1:-73105108 | Msa0042310:CDS |
CCCCGCAGATGACACAAACA+CGG | 0.617705 | 1_1:-73105821 | Msa0042310:CDS |
GTTATCGACAAGGGAAGTGA+GGG | 0.619048 | 1_1:-73105107 | Msa0042310:CDS |
AACTTCCAAAACGTCATGGT+CGG | 0.619737 | 1_1:+73105408 | None:intergenic |
GACGAGATTGAACTGTTGAA+GGG | 0.620700 | 1_1:-73105682 | Msa0042310:CDS |
CACAAGATGACTTTGGACAA+AGG | 0.621465 | 1_1:-73105511 | Msa0042310:CDS |
CGTGTTTGTGTCATCTGCGG+GGG | 0.627292 | 1_1:+73105822 | None:intergenic |
GCCGATGTTGTTATCGACAA+GGG | 0.629409 | 1_1:-73105116 | Msa0042310:CDS |
CCGTGTTTGTGTCATCTGCG+GGG | 0.639190 | 1_1:+73105821 | None:intergenic |
CATCAACTTCCAAAACGTCA+TGG | 0.640991 | 1_1:+73105404 | None:intergenic |
TGCAAGGTCAGATCAAGGCT+AGG | 0.648837 | 1_1:-73105021 | Msa0042310:CDS |
GGCAATGCTACTAGCATACG+GGG | 0.651150 | 1_1:-73105226 | Msa0042310:CDS |
GGGAAGTGAGGGATGAACAA+TGG | 0.665323 | 1_1:-73105096 | Msa0042310:CDS |
ATGAACAATGGTTAAAACGG+AGG | 0.670080 | 1_1:-73105084 | Msa0042310:CDS |
CATGGCCACCGTCACAACGG+GGG | 0.676320 | 1_1:+73105849 | None:intergenic |
CCATGGCCACCGTCACAACG+GGG | 0.678792 | 1_1:+73105848 | None:intergenic |
TCCCTTGTCGATAACAACAT+CGG | 0.682290 | 1_1:+73105115 | None:intergenic |
ACGGCGTTAAACAATATCAG+AGG | 0.682928 | 1_1:-73105720 | Msa0042310:CDS |
GCAAATACTACTATTCAAAG+CGG | 0.683552 | 1_1:-73105628 | Msa0042310:CDS |
AGTTATTCCCAAATTCAGCG+TGG | 0.688982 | 1_1:-73105584 | Msa0042310:CDS |
AGTGGTAGTAGCCACCGTGG+TGG | 0.692224 | 1_1:+73105786 | None:intergenic |
TGAAGACCAAATGGACAATG+TGG | 0.693003 | 1_1:-73105965 | Msa0042310:CDS |
AACATCGGCGACGCACTGGG+TGG | 0.698538 | 1_1:+73105130 | None:intergenic |
AGCTTGTTGAGAAGTTACGT+AGG | 0.729557 | 1_1:-73105546 | Msa0042310:CDS |
AACAAACACAGCCACCACGG+TGG | 0.758033 | 1_1:-73105797 | Msa0042310:CDS |
TATAGTGGTAGTAGCCACCG+TGG | 0.762058 | 1_1:+73105783 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCAATATTTTTATAACTT+TGG | - | chr1_1:73106099-73106118 | Msa0042310:intron | 10.0% |
!!! | AAAAAGAAATAGTTTTTTTT+AGG | - | chr1_1:73106144-73106163 | Msa0042310:intron | 10.0% |
!!! | AAAAGAAATAGTTTTTTTTA+GGG | - | chr1_1:73106145-73106164 | Msa0042310:intron | 10.0% |
!! | TTAGAATTAGATTTATATAT+TGG | - | chr1_1:73106170-73106189 | Msa0042310:intron | 10.0% |
!!! | TATAGTTTTTTTTTTTTTGA+AGG | - | chr1_1:73106193-73106212 | Msa0042310:intron | 10.0% |
!! | ATAATTAAAATCTAAACAAA+TGG | - | chr1_1:73106463-73106482 | Msa0042310:intron | 10.0% |
!! | ATATTTATACTATGTATAAA+AGG | - | chr1_1:73106495-73106514 | Msa0042310:intron | 10.0% |
!! | ATACAATAATGTTATATTAT+TGG | - | chr1_1:73106639-73106658 | Msa0042310:intron | 10.0% |
!! | ATACAATAATGTTATATTAT+TGG | - | chr1_1:73106639-73106658 | Msa0042310:intron | 10.0% |
!! | AAATTCAGTTAAATATATAA+AGG | + | chr1_1:73106965-73106984 | None:intergenic | 10.0% |
!!! | TTAACTGAATTTAAAATTTA+CGG | - | chr1_1:73106973-73106992 | Msa0042310:intron | 10.0% |
!! | TGAATAGAAATAATTATAAA+TGG | + | chr1_1:73107031-73107050 | None:intergenic | 10.0% |
!! | AAAATCAAATTTCTTAAGAA+CGG | + | chr1_1:73105220-73105239 | None:intergenic | 15.0% |
!! | TTAATCAATATACAAAAATC+AGG | + | chr1_1:73105774-73105793 | None:intergenic | 15.0% |
!!! | AAAGAAATAGTTTTTTTTAG+GGG | - | chr1_1:73106146-73106165 | Msa0042310:intron | 15.0% |
!!! | TTTTTTTGAAGGAAATATAT+TGG | - | chr1_1:73106204-73106223 | Msa0042310:intron | 15.0% |
!!! | GAAAAAGAGTAAAAAATTTT+TGG | + | chr1_1:73106270-73106289 | None:intergenic | 15.0% |
!! | AATTTATATTTATACTCTTC+AGG | - | chr1_1:73106680-73106699 | Msa0042310:intron | 15.0% |
!! | ATTTATATTTATACTCTTCA+GGG | - | chr1_1:73106681-73106700 | Msa0042310:intron | 15.0% |
!! | AATTTATATTTATACTCTTC+AGG | - | chr1_1:73106680-73106699 | Msa0042310:intron | 15.0% |
!! | ATTTATATTTATACTCTTCA+GGG | - | chr1_1:73106681-73106700 | Msa0042310:intron | 15.0% |
!! | GTTAAATATATAAAGGATAA+AGG | + | chr1_1:73106958-73106977 | None:intergenic | 15.0% |
!! | TCTTCTTATCATAATGATAT+TGG | - | chr1_1:73105099-73105118 | Msa0042310:CDS | 20.0% |
!!! | GTTCTTAAGAAATTTGATTT+TGG | - | chr1_1:73105219-73105238 | Msa0042310:CDS | 20.0% |
!!! | TAAGAAATTTGATTTTGGTA+AGG | - | chr1_1:73105224-73105243 | Msa0042310:CDS | 20.0% |
!!! | AGTAGATTATTTTGATATGT+AGG | + | chr1_1:73105579-73105598 | None:intergenic | 20.0% |
!! | AAATAATCTACTGTCATATT+TGG | - | chr1_1:73105587-73105606 | Msa0042310:CDS | 20.0% |
!! | CTTTGCAACAAATAAAAAAA+AGG | - | chr1_1:73105810-73105829 | Msa0042310:CDS | 20.0% |
!! | TTTATACTATGTATAAAAGG+TGG | - | chr1_1:73106498-73106517 | Msa0042310:intron | 20.0% |
!!! | TATAACAAAAAGTATTCAGA+CGG | - | chr1_1:73107502-73107521 | Msa0042310:intron | 20.0% |
! | ATCGTTCTATGATCAAATTA+AGG | - | chr1_1:73105122-73105141 | Msa0042310:CDS | 25.0% |
!! | GATTTTGTGTGAAATTTCAA+AGG | + | chr1_1:73105283-73105302 | None:intergenic | 25.0% |
! | ATTTCCTCATATTCTTCAAT+AGG | + | chr1_1:73105342-73105361 | None:intergenic | 25.0% |
! | GACAATCATCATAATAATTC+AGG | - | chr1_1:73105474-73105493 | Msa0042310:CDS | 25.0% |
! | AAGATTACTGTTACTCTTAT+CGG | + | chr1_1:73105532-73105551 | None:intergenic | 25.0% |
! | TTCAACAAGATATGTTCTAT+TGG | - | chr1_1:73105845-73105864 | Msa0042310:CDS | 25.0% |
! | GAAGACTATCTATTGTTTAA+AGG | + | chr1_1:73106338-73106357 | None:intergenic | 25.0% |
!!! | TTCCAACTTTTTTTTTTTGG+TGG | + | chr1_1:73106573-73106592 | None:intergenic | 25.0% |
! | ACCAAAAAAAAAAAGTTGGA+AGG | - | chr1_1:73106572-73106591 | Msa0042310:intron | 25.0% |
!!! | TCCTTCCAACTTTTTTTTTT+TGG | + | chr1_1:73106576-73106595 | None:intergenic | 25.0% |
!! | AAAAAAAGTTGGAAGGATTT+TGG | - | chr1_1:73106579-73106598 | Msa0042310:intron | 25.0% |
!! | AAAAAAGTTGGAAGGATTTT+GGG | - | chr1_1:73106580-73106599 | Msa0042310:intron | 25.0% |
! | ATTGTGAAGAAACAGATAAA+AGG | - | chr1_1:73107929-73107948 | Msa0042310:CDS | 25.0% |
! | TTGTGAAGAAACAGATAAAA+GGG | - | chr1_1:73107930-73107949 | Msa0042310:CDS | 25.0% |
AACAATAACTCAACTCCAAT+TGG | - | chr1_1:73105312-73105331 | Msa0042310:CDS | 30.0% | |
TGTTCCTATTGAAGAATATG+AGG | - | chr1_1:73105335-73105354 | Msa0042310:CDS | 30.0% | |
TAACAGTAATCTTGTGCATA+AGG | - | chr1_1:73105539-73105558 | Msa0042310:CDS | 30.0% | |
TGTGCATAAGGAATAGTATT+TGG | - | chr1_1:73105551-73105570 | Msa0042310:CDS | 30.0% | |
TAATCTACTGTCATATTTGG+AGG | - | chr1_1:73105590-73105609 | Msa0042310:CDS | 30.0% | |
!! | ACTTTGAAGCATTTGCAATA+TGG | + | chr1_1:73105647-73105666 | None:intergenic | 30.0% |
AAATGCTTCAAAGTCTAGAA+CGG | - | chr1_1:73105653-73105672 | Msa0042310:CDS | 30.0% | |
AAATCAGGAAATTGCTCATT+AGG | + | chr1_1:73105759-73105778 | None:intergenic | 30.0% | |
!! | TCATGTCTCTTTAAAATCCA+AGG | + | chr1_1:73105886-73105905 | None:intergenic | 30.0% |
ACTATGTATAAAAGGTGGTT+TGG | - | chr1_1:73106503-73106522 | Msa0042310:intron | 30.0% | |
GACAATGCATAAAATATGCA+AGG | - | chr1_1:73106525-73106544 | Msa0042310:intron | 30.0% | |
!!! | CAACTTTTTTTTTTTGGTGG+TGG | + | chr1_1:73106570-73106589 | None:intergenic | 30.0% |
CACCACCAAAAAAAAAAAGT+TGG | - | chr1_1:73106568-73106587 | Msa0042310:intron | 30.0% | |
! | CTTGATTAGTTAGACAATGA+CGG | + | chr1_1:73106931-73106950 | None:intergenic | 30.0% |
AACTACCATCAACAAACAAA+CGG | - | chr1_1:73107063-73107082 | Msa0042310:intron | 30.0% | |
TGGTTCAATACTCTAATATG+CGG | - | chr1_1:73107087-73107106 | Msa0042310:intron | 30.0% | |
ATACTCTAATATGCGGAAAA+TGG | - | chr1_1:73107094-73107113 | Msa0042310:intron | 30.0% | |
TTCTTCTTCTTCTTCTTCTT+CGG | + | chr1_1:73107200-73107219 | None:intergenic | 30.0% | |
CATTGTATGGACATAGAAAA+TGG | + | chr1_1:73107318-73107337 | None:intergenic | 30.0% | |
! | TTTTCTATGTCCATACAATG+TGG | - | chr1_1:73107318-73107337 | Msa0042310:intron | 30.0% |
TTAAACAATATCAGAGGCTA+TGG | - | chr1_1:73107527-73107546 | Msa0042310:intron | 30.0% | |
GCAAATACTACTATTCAAAG+CGG | - | chr1_1:73107613-73107632 | Msa0042310:intron | 30.0% | |
AGAAGTTACGTAGGTTAAAA+AGG | - | chr1_1:73107704-73107723 | Msa0042310:intron | 30.0% | |
TTAACGTTGTCAATAAGATC+AGG | + | chr1_1:73107886-73107905 | None:intergenic | 30.0% | |
TATTGACAACGTTAAGATGA+AGG | - | chr1_1:73107891-73107910 | Msa0042310:CDS | 30.0% | |
ATGATAAGAAGATCCACGAT+TGG | + | chr1_1:73105091-73105110 | None:intergenic | 35.0% | |
TCTTCAATAGGAACACCAAT+TGG | + | chr1_1:73105330-73105349 | None:intergenic | 35.0% | |
AATGAGCTGAATTAGGGTTA+GGG | + | chr1_1:73105374-73105393 | None:intergenic | 35.0% | |
AAATGAGCTGAATTAGGGTT+AGG | + | chr1_1:73105375-73105394 | None:intergenic | 35.0% | |
CAGTCAAATGAGCTGAATTA+GGG | + | chr1_1:73105380-73105399 | None:intergenic | 35.0% | |
TCAGTCAAATGAGCTGAATT+AGG | + | chr1_1:73105381-73105400 | None:intergenic | 35.0% | |
TTCACAATCGTAACTTCTGA+TGG | - | chr1_1:73105689-73105708 | Msa0042310:CDS | 35.0% | |
TCACAATCGTAACTTCTGAT+GGG | - | chr1_1:73105690-73105709 | Msa0042310:CDS | 35.0% | |
!! | GGGGTATTTTATGAAGTTTG+AGG | - | chr1_1:73105711-73105730 | Msa0042310:CDS | 35.0% |
GGATATTATTATCGTGTCCT+TGG | - | chr1_1:73105866-73105885 | Msa0042310:CDS | 35.0% | |
AGACATGAACAATAGTCTAG+TGG | - | chr1_1:73105898-73105917 | Msa0042310:CDS | 35.0% | |
GTTATGCAGATGATTGTTCT+CGG | - | chr1_1:73105978-73105997 | Msa0042310:CDS | 35.0% | |
TTATGCAGATGATTGTTCTC+GGG | - | chr1_1:73105979-73105998 | Msa0042310:CDS | 35.0% | |
TGCATAAAATATGCAAGGTC+CGG | - | chr1_1:73106530-73106549 | Msa0042310:intron | 35.0% | |
CGAAGGTTAAAGTTTCAAGA+AGG | + | chr1_1:73106898-73106917 | None:intergenic | 35.0% | |
GACAAAATCCAAGAAACCAA+TGG | + | chr1_1:73107151-73107170 | None:intergenic | 35.0% | |
TGACAATGTTGAAGACCAAA+TGG | - | chr1_1:73107267-73107286 | Msa0042310:intron | 35.0% | |
!! | TTTTGAGCGTGTTGTTATAG+TGG | + | chr1_1:73107476-73107495 | None:intergenic | 35.0% |
CTGGATTACATTAAACAGCA+TGG | - | chr1_1:73107586-73107605 | Msa0042310:intron | 35.0% | |
TTGAATTCCACGCTGAATTT+GGG | + | chr1_1:73107667-73107686 | None:intergenic | 35.0% | |
AAGGAAACACAAGATGACTT+TGG | - | chr1_1:73107723-73107742 | Msa0042310:CDS | 35.0% | |
TGAGGGATCTTGAAAGAAAT+CGG | + | chr1_1:73107766-73107785 | None:intergenic | 35.0% | |
CTTGTGGGAAATTTCGAAAA+TGG | + | chr1_1:73107797-73107816 | None:intergenic | 35.0% | |
TCGAAATTTCCCACAAGATT+TGG | - | chr1_1:73107800-73107819 | Msa0042310:intron | 35.0% | |
CGAAATTTCCCACAAGATTT+GGG | - | chr1_1:73107801-73107820 | Msa0042310:intron | 35.0% | |
GAAATTTCCCACAAGATTTG+GGG | - | chr1_1:73107802-73107821 | Msa0042310:intron | 35.0% | |
TCAATAAGATCAGGACTTTC+AGG | + | chr1_1:73107877-73107896 | None:intergenic | 35.0% | |
ACGTGAACACAAAAAATGAC+CGG | - | chr1_1:73107986-73108005 | Msa0042310:intron | 35.0% | |
ACAAAAAATGACCGGAACAA+TGG | - | chr1_1:73107994-73108013 | Msa0042310:intron | 35.0% | |
! | TTGTTTCTCACCATTGTTGA+AGG | - | chr1_1:73108062-73108081 | Msa0042310:intron | 35.0% |
ACCATTGTTGAAGGAACTAT+TGG | - | chr1_1:73108071-73108090 | Msa0042310:intron | 35.0% | |
TCCAATAGTTCCTTCAACAA+TGG | + | chr1_1:73108075-73108094 | None:intergenic | 35.0% | |
GGGATGAACAATGGTTAAAA+CGG | - | chr1_1:73108154-73108173 | Msa0042310:CDS | 35.0% | |
ATGAACAATGGTTAAAACGG+AGG | - | chr1_1:73108157-73108176 | Msa0042310:CDS | 35.0% | |
! | ATGGTTAAAACGGAGGATTT+TGG | - | chr1_1:73108164-73108183 | Msa0042310:CDS | 35.0% |
! | AACTGGAGGTGTATTTGAAT+CGG | - | chr1_1:73108187-73108206 | Msa0042310:CDS | 35.0% |
! | AGAAGCTTTTCCAATGTCTC+TGG | - | chr1_1:73105016-73105035 | Msa0042310:CDS | 40.0% |
CTTCTTTAGTCCAGAGACAT+TGG | + | chr1_1:73105029-73105048 | None:intergenic | 40.0% | |
! | CTTATCAACAAGCTAGCTCT+TGG | + | chr1_1:73105169-73105188 | None:intergenic | 40.0% |
!! | AGCTTGTTGATAAGCTTCGA+AGG | - | chr1_1:73105175-73105194 | Msa0042310:CDS | 40.0% |
CTGAATTAGGGTTAGGGTTT+GGG | + | chr1_1:73105368-73105387 | None:intergenic | 40.0% | |
TACGATTGTGAACGATGGTT+AGG | + | chr1_1:73105681-73105700 | None:intergenic | 40.0% | |
GAAGTTACGATTGTGAACGA+TGG | + | chr1_1:73105686-73105705 | None:intergenic | 40.0% | |
CACAATCGTAACTTCTGATG+GGG | - | chr1_1:73105691-73105710 | Msa0042310:CDS | 40.0% | |
ACAATCGTAACTTCTGATGG+GGG | - | chr1_1:73105692-73105711 | Msa0042310:CDS | 40.0% | |
GCTCATTAGGCATTTCAGAT+CGG | + | chr1_1:73105746-73105765 | None:intergenic | 40.0% | |
CTGAGATGATTCTCATGTGT+GGG | - | chr1_1:73105945-73105964 | Msa0042310:CDS | 40.0% | |
GCATAAAATATGCAAGGTCC+GGG | - | chr1_1:73106531-73106550 | Msa0042310:intron | 40.0% | |
CATAAAATATGCAAGGTCCG+GGG | - | chr1_1:73106532-73106551 | Msa0042310:intron | 40.0% | |
!!! | TTTTTTTTTGGTGGTGGCCA+GGG | + | chr1_1:73106564-73106583 | None:intergenic | 40.0% |
!!! | TTTTTTTTTTGGTGGTGGCC+AGG | + | chr1_1:73106565-73106584 | None:intergenic | 40.0% |
TCTTCAGGGACGTTACATTA+CGG | - | chr1_1:73106695-73106714 | Msa0042310:intron | 40.0% | |
TCTTCAGGGACGTTACATTA+CGG | - | chr1_1:73106695-73106714 | Msa0042310:intron | 40.0% | |
ACCATCAACAAACAAACGGT+TGG | - | chr1_1:73107067-73107086 | Msa0042310:intron | 40.0% | |
! | ACCAACCGTTTGTTTGTTGA+TGG | + | chr1_1:73107071-73107090 | None:intergenic | 40.0% |
!! | CAATGGTGAAAGCATTGTTG+AGG | + | chr1_1:73107134-73107153 | None:intergenic | 40.0% |
CTCAACAATGCTTTCACCAT+TGG | - | chr1_1:73107132-73107151 | Msa0042310:intron | 40.0% | |
!! | TGCTTTCACCATTGGTTTCT+TGG | - | chr1_1:73107140-73107159 | Msa0042310:intron | 40.0% |
TGAAGACCAAATGGACAATG+TGG | - | chr1_1:73107276-73107295 | Msa0042310:intron | 40.0% | |
CATCATCCACATTGTCCATT+TGG | + | chr1_1:73107285-73107304 | None:intergenic | 40.0% | |
! | CAATGTGGATGATGACGAAA+AGG | - | chr1_1:73107291-73107310 | Msa0042310:intron | 40.0% |
TGGTCTTCATCCACATTGTA+TGG | + | chr1_1:73107331-73107350 | None:intergenic | 40.0% | |
CAATGTGGATGAAGACCAAA+TGG | - | chr1_1:73107333-73107352 | Msa0042310:intron | 40.0% | |
CAATGGGAATGTTGTCCATT+TGG | + | chr1_1:73107351-73107370 | None:intergenic | 40.0% | |
ACGGCGTTAAACAATATCAG+AGG | - | chr1_1:73107521-73107540 | Msa0042310:intron | 40.0% | |
GACGAGATTGAACTGTTGAA+GGG | - | chr1_1:73107559-73107578 | Msa0042310:intron | 40.0% | |
TGAACTGTTGAAGGGATATC+TGG | - | chr1_1:73107567-73107586 | Msa0042310:intron | 40.0% | |
AGTTATTCCCAAATTCAGCG+TGG | - | chr1_1:73107657-73107676 | Msa0042310:intron | 40.0% | |
GTTGAATTCCACGCTGAATT+TGG | + | chr1_1:73107668-73107687 | None:intergenic | 40.0% | |
AATTCAGCGTGGAATTCAAC+AGG | - | chr1_1:73107668-73107687 | Msa0042310:intron | 40.0% | |
TACGTAACTTCTCAACAAGC+TGG | + | chr1_1:73107696-73107715 | None:intergenic | 40.0% | |
!! | AGCTTGTTGAGAAGTTACGT+AGG | - | chr1_1:73107695-73107714 | Msa0042310:intron | 40.0% |
CACAAGATGACTTTGGACAA+AGG | - | chr1_1:73107730-73107749 | Msa0042310:CDS | 40.0% | |
GATTTCTTTCAAGATCCCTC+AGG | - | chr1_1:73107765-73107784 | Msa0042310:CDS | 40.0% | |
AACTTCCAAAACGTCATGGT+CGG | + | chr1_1:73107836-73107855 | None:intergenic | 40.0% | |
CATCAACTTCCAAAACGTCA+TGG | + | chr1_1:73107840-73107859 | None:intergenic | 40.0% | |
TAGTAGCATTGCCATTGTTC+CGG | + | chr1_1:73108008-73108027 | None:intergenic | 40.0% | |
ATGGCAATGCTACTAGCATA+CGG | - | chr1_1:73108013-73108032 | Msa0042310:intron | 40.0% | |
TGGTGAGAAACAAGACTTCA+TGG | + | chr1_1:73108055-73108074 | None:intergenic | 40.0% | |
TCCCTTGTCGATAACAACAT+CGG | + | chr1_1:73108129-73108148 | None:intergenic | 40.0% | |
!!! | AAAACGGAGGATTTTGGAAC+TGG | - | chr1_1:73108170-73108189 | Msa0042310:CDS | 40.0% |
GACGAGATTACGATCTTGCA+AGG | - | chr1_1:73105048-73105067 | Msa0042310:CDS | 45.0% | |
GCTGAATTAGGGTTAGGGTT+TGG | + | chr1_1:73105369-73105388 | None:intergenic | 45.0% | |
GAGATTGCGAGCATCTTAGT+AGG | - | chr1_1:73105425-73105444 | Msa0042310:CDS | 45.0% | |
GCTGAGATGATTCTCATGTG+TGG | - | chr1_1:73105944-73105963 | Msa0042310:CDS | 45.0% | |
AGACATTTGTGTGACCATCC+TGG | + | chr1_1:73106017-73106036 | None:intergenic | 45.0% | |
TTCAAGAAGGCTTAGAGCCT+CGG | + | chr1_1:73106885-73106904 | None:intergenic | 45.0% | |
! | ATGACGGTCGTTGATTACGA+AGG | + | chr1_1:73106915-73106934 | None:intergenic | 45.0% |
TTCTTCTTCGGATGACGAAG+AGG | + | chr1_1:73107188-73107207 | None:intergenic | 45.0% | |
TCAGAAACGGCAAGTGCAAT+GGG | + | chr1_1:73107367-73107386 | None:intergenic | 45.0% | |
ATCAGAAACGGCAAGTGCAA+TGG | + | chr1_1:73107368-73107387 | None:intergenic | 45.0% | |
GGACGAGATTGAACTGTTGA+AGG | - | chr1_1:73107558-73107577 | Msa0042310:intron | 45.0% | |
GACTTTGGACAAAGGCAAAG+AGG | - | chr1_1:73107738-73107757 | Msa0042310:CDS | 45.0% | |
!! | CGAAAATGGCTTGTTCCTGA+GGG | + | chr1_1:73107783-73107802 | None:intergenic | 45.0% |
!! | TCGAAAATGGCTTGTTCCTG+AGG | + | chr1_1:73107784-73107803 | None:intergenic | 45.0% |
GTCATTGCCCCAAATCTTGT+GGG | + | chr1_1:73107812-73107831 | None:intergenic | 45.0% | |
TGTCATTGCCCCAAATCTTG+TGG | + | chr1_1:73107813-73107832 | None:intergenic | 45.0% | |
AGATCAGGACTTTCAGGAAC+AGG | + | chr1_1:73107871-73107890 | None:intergenic | 45.0% | |
TGGCAATGCTACTAGCATAC+GGG | - | chr1_1:73108014-73108033 | Msa0042310:intron | 45.0% | |
GCCGATGTTGTTATCGACAA+GGG | - | chr1_1:73108125-73108144 | Msa0042310:CDS | 45.0% | |
TGTTATCGACAAGGGAAGTG+AGG | - | chr1_1:73108133-73108152 | Msa0042310:CDS | 45.0% | |
GTTATCGACAAGGGAAGTGA+GGG | - | chr1_1:73108134-73108153 | Msa0042310:CDS | 45.0% | |
! | GGAGGTGTATTTGAATCGGT+TGG | - | chr1_1:73108191-73108210 | Msa0042310:CDS | 45.0% |
AATCGGTTGGAGTTGTTGCA+AGG | - | chr1_1:73108204-73108223 | Msa0042310:CDS | 45.0% | |
GTTGTTGCAAGGTCAGATCA+AGG | - | chr1_1:73108215-73108234 | Msa0042310:CDS | 45.0% | |
!!! | AATAAATTATTATTTTTTGA+AGG | + | chr1_1:73106060-73106079 | None:intergenic | 5.0% |
CTCGATTACAACGCCAATCG+TGG | - | chr1_1:73105075-73105094 | Msa0042310:CDS | 50.0% | |
GGCAATGATACTGACCAGGA+TGG | - | chr1_1:73106000-73106019 | Msa0042310:CDS | 50.0% | |
TTAGAGCCTCGGCTTCTGAA+GGG | + | chr1_1:73106874-73106893 | None:intergenic | 50.0% | |
AACGGGGGATGCATCAGAAA+CGG | + | chr1_1:73107380-73107399 | None:intergenic | 50.0% | |
TGCCGTGTTTGTGTCATCTG+CGG | + | chr1_1:73107425-73107444 | None:intergenic | 50.0% | |
TATAGTGGTAGTAGCCACCG+TGG | + | chr1_1:73107461-73107480 | None:intergenic | 50.0% | |
TCAGAGGCTATGGACAAAGC+AGG | - | chr1_1:73107537-73107556 | Msa0042310:intron | 50.0% | |
! | TGACACCGACCATGACGTTT+TGG | - | chr1_1:73107828-73107847 | Msa0042310:intron | 50.0% |
GGCAATGCTACTAGCATACG+GGG | - | chr1_1:73108015-73108034 | Msa0042310:intron | 50.0% | |
CGCCGATGTTGTTATCGACA+AGG | - | chr1_1:73108124-73108143 | Msa0042310:CDS | 50.0% | |
GGGAAGTGAGGGATGAACAA+TGG | - | chr1_1:73108145-73108164 | Msa0042310:CDS | 50.0% | |
!!! | ACGGAGGATTTTGGAACTGG+AGG | - | chr1_1:73108173-73108192 | Msa0042310:CDS | 50.0% |
TGCAAGGTCAGATCAAGGCT+AGG | - | chr1_1:73108220-73108239 | Msa0042310:CDS | 50.0% | |
AGGTCAGATCAAGGCTAGGT+TGG | - | chr1_1:73108224-73108243 | Msa0042310:CDS | 50.0% | |
! | TCAGATCAAGGCTAGGTTGG+AGG | - | chr1_1:73108227-73108246 | Msa0042310:CDS | 50.0% |
CTCGGGCAATGATACTGACC+AGG | - | chr1_1:73105996-73106015 | Msa0042310:CDS | 55.0% | |
! | TAGAGCCTCGGCTTCTGAAG+GGG | + | chr1_1:73106873-73106892 | None:intergenic | 55.0% |
CTTAGAGCCTCGGCTTCTGA+AGG | + | chr1_1:73106875-73106894 | None:intergenic | 55.0% | |
TGATGCATCCCCCGTTGTGA+CGG | - | chr1_1:73107384-73107403 | Msa0042310:intron | 55.0% | |
CGTGTTTGTGTCATCTGCGG+GGG | + | chr1_1:73107422-73107441 | None:intergenic | 55.0% | |
CCGTGTTTGTGTCATCTGCG+GGG | + | chr1_1:73107423-73107442 | None:intergenic | 55.0% | |
CCCCGCAGATGACACAAACA+CGG | - | chr1_1:73107420-73107439 | Msa0042310:intron | 55.0% | |
GCCGTGTTTGTGTCATCTGC+GGG | + | chr1_1:73107424-73107443 | None:intergenic | 55.0% | |
GGCAACAAACACAGCCACCA+CGG | - | chr1_1:73107441-73107460 | Msa0042310:intron | 55.0% | |
AACAAACACAGCCACCACGG+TGG | - | chr1_1:73107444-73107463 | Msa0042310:intron | 55.0% | |
AACAACATCGGCGACGCACT+GGG | + | chr1_1:73108117-73108136 | None:intergenic | 55.0% | |
TAACAACATCGGCGACGCAC+TGG | + | chr1_1:73108118-73108137 | None:intergenic | 55.0% | |
AAGGTCCGGGGTTCAAACCC+TGG | - | chr1_1:73106544-73106563 | Msa0042310:intron | 60.0% | |
GTCTTCCCCTTCAGAAGCCG+AGG | - | chr1_1:73106865-73106884 | Msa0042310:intron | 60.0% | |
AGCCATGGCCACCGTCACAA+CGG | + | chr1_1:73107398-73107417 | None:intergenic | 60.0% | |
AGTGGTAGTAGCCACCGTGG+TGG | + | chr1_1:73107458-73107477 | None:intergenic | 60.0% | |
GGTGGCCAGGGTTTGAACCC+CGG | + | chr1_1:73106552-73106571 | None:intergenic | 65.0% | |
TGCATCCCCCGTTGTGACGG+TGG | - | chr1_1:73107387-73107406 | Msa0042310:intron | 65.0% | |
CATGGCCACCGTCACAACGG+GGG | + | chr1_1:73107395-73107414 | None:intergenic | 65.0% | |
CCATGGCCACCGTCACAACG+GGG | + | chr1_1:73107396-73107415 | None:intergenic | 65.0% | |
GCCATGGCCACCGTCACAAC+GGG | + | chr1_1:73107397-73107416 | None:intergenic | 65.0% | |
! | GACGCACTGGGTGGCTCTAC+TGG | + | chr1_1:73108105-73108124 | None:intergenic | 65.0% |
AACATCGGCGACGCACTGGG+TGG | + | chr1_1:73108114-73108133 | None:intergenic | 65.0% | |
CCCCGTTGTGACGGTGGCCA+TGG | - | chr1_1:73107393-73107412 | Msa0042310:intron | 70.0% | |
GTCATCTGCGGGGGCAGCCA+TGG | + | chr1_1:73107413-73107432 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 73104991 | 73108272 | 73104991 | ID=Msa0042310;Name=Msa0042310 |
chr1_1 | mRNA | 73104991 | 73108272 | 73104991 | ID=Msa0042310-mRNA-1;Parent=Msa0042310;Name=Msa0042310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|0.33|0.25|4|0|479 |
chr1_1 | exon | 73108102 | 73108272 | 73108102 | ID=Msa0042310-mRNA-1:exon:24427;Parent=Msa0042310-mRNA-1 |
chr1_1 | exon | 73107856 | 73107957 | 73107856 | ID=Msa0042310-mRNA-1:exon:24426;Parent=Msa0042310-mRNA-1 |
chr1_1 | exon | 73107720 | 73107816 | 73107720 | ID=Msa0042310-mRNA-1:exon:24425;Parent=Msa0042310-mRNA-1 |
chr1_1 | exon | 73104991 | 73106060 | 73104991 | ID=Msa0042310-mRNA-1:exon:24424;Parent=Msa0042310-mRNA-1 |
chr1_1 | CDS | 73108102 | 73108272 | 73108102 | ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1 |
chr1_1 | CDS | 73107856 | 73107957 | 73107856 | ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1 |
chr1_1 | CDS | 73107720 | 73107816 | 73107720 | ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1 |
chr1_1 | CDS | 73104991 | 73106060 | 73104991 | ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1 |
Gene Sequence |
Protein sequence |