AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042310 MtrunA17_Chr1g0191011 91.117 349 30 1 131 479 28 375 0.0 611
Msa0042310 MtrunA17_Chr1g0191021 52.174 184 27 2 1 123 86 269 1.37e-41 152
Msa0042310 MtrunA17_Chr1g0191021 31.944 360 179 12 161 475 32 370 3.58e-40 149
Msa0042310 MtrunA17_Chr7g0273821 44.444 171 76 7 175 332 42 206 5.45e-28 115
Msa0042310 MtrunA17_Chr7g0273821 68.627 51 16 0 7 57 106 156 1.92e-16 81.6
Msa0042310 MtrunA17_Chr7g0273821 37.607 117 50 5 380 477 323 435 9.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042310 AT5G28040.2 33.880 366 158 14 180 476 72 422 2.20e-43 159
Msa0042310 AT5G28040.1 33.880 366 158 14 180 476 72 422 2.20e-43 159
Msa0042310 AT3G04930.2 38.650 163 81 5 180 330 78 233 1.30e-26 111
Msa0042310 AT3G04930.2 59.259 54 20 2 6 57 132 185 2.38e-11 65.9
Msa0042310 AT3G04930.1 38.650 163 81 5 180 330 78 233 2.94e-26 111
Msa0042310 AT3G04930.1 59.259 54 20 2 6 57 132 185 2.62e-11 65.9
Msa0042310 AT1G11510.2 39.394 99 53 2 235 332 109 201 1.19e-12 69.3
Msa0042310 AT1G11510.1 39.394 99 53 2 235 332 138 230 1.22e-12 69.7
Msa0042310 AT1G61730.1 31.206 141 88 5 191 331 114 245 2.03e-11 65.9

Find 107 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAATTCCACGCTGAATT+TGG 0.141013 1_1:+73105576 None:intergenic
TCAGTCAAATGAGCTGAATT+AGG 0.184630 1_1:+73107863 None:intergenic
TCGAAATTTCCCACAAGATT+TGG 0.203495 1_1:-73105441 Msa0042310:CDS
CGAAATTTCCCACAAGATTT+GGG 0.213735 1_1:-73105440 Msa0042310:CDS
CTGAATTAGGGTTAGGGTTT+GGG 0.227113 1_1:+73107876 None:intergenic
TCTTCTTATCATAATGATAT+TGG 0.242509 1_1:-73108142 Msa0042310:CDS
CTTGTGGGAAATTTCGAAAA+TGG 0.256771 1_1:+73105447 None:intergenic
AGAAGTTACGTAGGTTAAAA+AGG 0.283260 1_1:-73105537 Msa0042310:CDS
TCAATAAGATCAGGACTTTC+AGG 0.284560 1_1:+73105367 None:intergenic
AAGATTACTGTTACTCTTAT+CGG 0.285919 1_1:+73107712 None:intergenic
ACCATTGTTGAAGGAACTAT+TGG 0.296222 1_1:-73105170 Msa0042310:CDS
TGAACTGTTGAAGGGATATC+TGG 0.305389 1_1:-73105674 Msa0042310:CDS
GACAATCATCATAATAATTC+AGG 0.314652 1_1:-73107767 Msa0042310:CDS
ATTTCCTCATATTCTTCAAT+AGG 0.320555 1_1:+73107902 None:intergenic
ATGGTTAAAACGGAGGATTT+TGG 0.338805 1_1:-73105077 Msa0042310:CDS
CAGTCAAATGAGCTGAATTA+GGG 0.341975 1_1:+73107864 None:intergenic
GCTGAATTAGGGTTAGGGTT+TGG 0.352389 1_1:+73107875 None:intergenic
AAATGAGCTGAATTAGGGTT+AGG 0.355729 1_1:+73107869 None:intergenic
TGACACCGACCATGACGTTT+TGG 0.361992 1_1:-73105413 Msa0042310:CDS
TGGTCTTCATCCACATTGTA+TGG 0.361996 1_1:+73105913 None:intergenic
TTGAATTCCACGCTGAATTT+GGG 0.366580 1_1:+73105577 None:intergenic
GCCATGGCCACCGTCACAAC+GGG 0.369780 1_1:+73105847 None:intergenic
GACGCACTGGGTGGCTCTAC+TGG 0.372415 1_1:+73105139 None:intergenic
ATTGTGAAGAAACAGATAAA+AGG 0.382017 1_1:-73105312 Msa0042310:CDS
CATTGTATGGACATAGAAAA+TGG 0.389529 1_1:+73105926 None:intergenic
TGGTGAGAAACAAGACTTCA+TGG 0.394662 1_1:+73105189 None:intergenic
AACAATAACTCAACTCCAAT+TGG 0.394865 1_1:-73107929 Msa0042310:CDS
CATCATCCACATTGTCCATT+TGG 0.402335 1_1:+73105959 None:intergenic
GCCGTGTTTGTGTCATCTGC+GGG 0.417687 1_1:+73105820 None:intergenic
ATCGTTCTATGATCAAATTA+AGG 0.428455 1_1:-73108119 Msa0042310:CDS
TAGTAGCATTGCCATTGTTC+CGG 0.431642 1_1:+73105236 None:intergenic
TGAGGGATCTTGAAAGAAAT+CGG 0.433564 1_1:+73105478 None:intergenic
TTGTTTCTCACCATTGTTGA+AGG 0.439029 1_1:-73105179 Msa0042310:CDS
TAACAACATCGGCGACGCAC+TGG 0.453222 1_1:+73105126 None:intergenic
AGATCAGGACTTTCAGGAAC+AGG 0.454735 1_1:+73105373 None:intergenic
CAATGGGAATGTTGTCCATT+TGG 0.457011 1_1:+73105893 None:intergenic
CCCCGTTGTGACGGTGGCCA+TGG 0.457760 1_1:-73105848 Msa0042310:CDS
TCTTCAATAGGAACACCAAT+TGG 0.467577 1_1:+73107914 None:intergenic
TGACAATGTTGAAGACCAAA+TGG 0.469140 1_1:-73105974 Msa0042310:CDS
AATTCAGCGTGGAATTCAAC+AGG 0.472407 1_1:-73105573 Msa0042310:CDS
AATGAGCTGAATTAGGGTTA+GGG 0.478935 1_1:+73107870 None:intergenic
TGTTCCTATTGAAGAATATG+AGG 0.484128 1_1:-73107906 Msa0042310:CDS
TCAGAAACGGCAAGTGCAAT+GGG 0.486716 1_1:+73105877 None:intergenic
GGACGAGATTGAACTGTTGA+AGG 0.488252 1_1:-73105683 Msa0042310:CDS
CTTCTTTAGTCCAGAGACAT+TGG 0.490028 1_1:+73108215 None:intergenic
TATTGACAACGTTAAGATGA+AGG 0.490932 1_1:-73105350 Msa0042310:CDS
AAGGAAACACAAGATGACTT+TGG 0.497734 1_1:-73105518 Msa0042310:CDS
CAATGTGGATGAAGACCAAA+TGG 0.497943 1_1:-73105908 Msa0042310:CDS
CTCGATTACAACGCCAATCG+TGG 0.500789 1_1:-73108166 Msa0042310:CDS
ATCAGAAACGGCAAGTGCAA+TGG 0.502613 1_1:+73105876 None:intergenic
TTAAACAATATCAGAGGCTA+TGG 0.508336 1_1:-73105714 Msa0042310:CDS
TCAGATCAAGGCTAGGTTGG+AGG 0.516669 1_1:-73105014 Msa0042310:CDS
TTGTGAAGAAACAGATAAAA+GGG 0.517946 1_1:-73105311 Msa0042310:CDS
TCGAAAATGGCTTGTTCCTG+AGG 0.518443 1_1:+73105460 None:intergenic
TTAACGTTGTCAATAAGATC+AGG 0.519347 1_1:+73105358 None:intergenic
GGAGGTGTATTTGAATCGGT+TGG 0.520311 1_1:-73105050 Msa0042310:CDS
GTCATTGCCCCAAATCTTGT+GGG 0.523632 1_1:+73105432 None:intergenic
AACTGGAGGTGTATTTGAAT+CGG 0.526700 1_1:-73105054 Msa0042310:CDS
CGAAAATGGCTTGTTCCTGA+GGG 0.533678 1_1:+73105461 None:intergenic
GATTTCTTTCAAGATCCCTC+AGG 0.542535 1_1:-73105476 Msa0042310:CDS
TGTCATTGCCCCAAATCTTG+TGG 0.546121 1_1:+73105431 None:intergenic
AATCGGTTGGAGTTGTTGCA+AGG 0.547050 1_1:-73105037 Msa0042310:CDS
GGCAACAAACACAGCCACCA+CGG 0.547339 1_1:-73105800 Msa0042310:CDS
GACGAGATTACGATCTTGCA+AGG 0.547606 1_1:-73108193 Msa0042310:CDS
CGCCGATGTTGTTATCGACA+AGG 0.549485 1_1:-73105117 Msa0042310:CDS
AACAACATCGGCGACGCACT+GGG 0.551267 1_1:+73105127 None:intergenic
TCCAATAGTTCCTTCAACAA+TGG 0.555130 1_1:+73105169 None:intergenic
ATGGCAATGCTACTAGCATA+CGG 0.556871 1_1:-73105228 Msa0042310:CDS
TGGCAATGCTACTAGCATAC+GGG 0.563532 1_1:-73105227 Msa0042310:CDS
GGGATGAACAATGGTTAAAA+CGG 0.566430 1_1:-73105087 Msa0042310:CDS
CTGGATTACATTAAACAGCA+TGG 0.577356 1_1:-73105655 Msa0042310:CDS
TGCCGTGTTTGTGTCATCTG+CGG 0.578987 1_1:+73105819 None:intergenic
AGCCATGGCCACCGTCACAA+CGG 0.580091 1_1:+73105846 None:intergenic
CAATGTGGATGATGACGAAA+AGG 0.583654 1_1:-73105950 Msa0042310:CDS
GACTTTGGACAAAGGCAAAG+AGG 0.584181 1_1:-73105503 Msa0042310:CDS
TACGTAACTTCTCAACAAGC+TGG 0.586441 1_1:+73105548 None:intergenic
GTTGTTGCAAGGTCAGATCA+AGG 0.586461 1_1:-73105026 Msa0042310:CDS
TCAGAGGCTATGGACAAAGC+AGG 0.591463 1_1:-73105704 Msa0042310:CDS
AGGTCAGATCAAGGCTAGGT+TGG 0.595411 1_1:-73105017 Msa0042310:CDS
ATGATAAGAAGATCCACGAT+TGG 0.603760 1_1:+73108153 None:intergenic
GAAATTTCCCACAAGATTTG+GGG 0.610345 1_1:-73105439 Msa0042310:CDS
TGTTATCGACAAGGGAAGTG+AGG 0.611514 1_1:-73105108 Msa0042310:CDS
CCCCGCAGATGACACAAACA+CGG 0.617705 1_1:-73105821 Msa0042310:CDS
GTTATCGACAAGGGAAGTGA+GGG 0.619048 1_1:-73105107 Msa0042310:CDS
AACTTCCAAAACGTCATGGT+CGG 0.619737 1_1:+73105408 None:intergenic
GACGAGATTGAACTGTTGAA+GGG 0.620700 1_1:-73105682 Msa0042310:CDS
CACAAGATGACTTTGGACAA+AGG 0.621465 1_1:-73105511 Msa0042310:CDS
CGTGTTTGTGTCATCTGCGG+GGG 0.627292 1_1:+73105822 None:intergenic
GCCGATGTTGTTATCGACAA+GGG 0.629409 1_1:-73105116 Msa0042310:CDS
CCGTGTTTGTGTCATCTGCG+GGG 0.639190 1_1:+73105821 None:intergenic
CATCAACTTCCAAAACGTCA+TGG 0.640991 1_1:+73105404 None:intergenic
TGCAAGGTCAGATCAAGGCT+AGG 0.648837 1_1:-73105021 Msa0042310:CDS
GGCAATGCTACTAGCATACG+GGG 0.651150 1_1:-73105226 Msa0042310:CDS
GGGAAGTGAGGGATGAACAA+TGG 0.665323 1_1:-73105096 Msa0042310:CDS
ATGAACAATGGTTAAAACGG+AGG 0.670080 1_1:-73105084 Msa0042310:CDS
CATGGCCACCGTCACAACGG+GGG 0.676320 1_1:+73105849 None:intergenic
CCATGGCCACCGTCACAACG+GGG 0.678792 1_1:+73105848 None:intergenic
TCCCTTGTCGATAACAACAT+CGG 0.682290 1_1:+73105115 None:intergenic
ACGGCGTTAAACAATATCAG+AGG 0.682928 1_1:-73105720 Msa0042310:CDS
GCAAATACTACTATTCAAAG+CGG 0.683552 1_1:-73105628 Msa0042310:CDS
AGTTATTCCCAAATTCAGCG+TGG 0.688982 1_1:-73105584 Msa0042310:CDS
AGTGGTAGTAGCCACCGTGG+TGG 0.692224 1_1:+73105786 None:intergenic
TGAAGACCAAATGGACAATG+TGG 0.693003 1_1:-73105965 Msa0042310:CDS
AACATCGGCGACGCACTGGG+TGG 0.698538 1_1:+73105130 None:intergenic
AGCTTGTTGAGAAGTTACGT+AGG 0.729557 1_1:-73105546 Msa0042310:CDS
AACAAACACAGCCACCACGG+TGG 0.758033 1_1:-73105797 Msa0042310:CDS
TATAGTGGTAGTAGCCACCG+TGG 0.762058 1_1:+73105783 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATATTTTTATAACTT+TGG - chr1_1:73106099-73106118 Msa0042310:intron 10.0%
!!! AAAAAGAAATAGTTTTTTTT+AGG - chr1_1:73106144-73106163 Msa0042310:intron 10.0%
!!! AAAAGAAATAGTTTTTTTTA+GGG - chr1_1:73106145-73106164 Msa0042310:intron 10.0%
!! TTAGAATTAGATTTATATAT+TGG - chr1_1:73106170-73106189 Msa0042310:intron 10.0%
!!! TATAGTTTTTTTTTTTTTGA+AGG - chr1_1:73106193-73106212 Msa0042310:intron 10.0%
!! ATAATTAAAATCTAAACAAA+TGG - chr1_1:73106463-73106482 Msa0042310:intron 10.0%
!! ATATTTATACTATGTATAAA+AGG - chr1_1:73106495-73106514 Msa0042310:intron 10.0%
!! ATACAATAATGTTATATTAT+TGG - chr1_1:73106639-73106658 Msa0042310:intron 10.0%
!! ATACAATAATGTTATATTAT+TGG - chr1_1:73106639-73106658 Msa0042310:intron 10.0%
!! AAATTCAGTTAAATATATAA+AGG + chr1_1:73106965-73106984 None:intergenic 10.0%
!!! TTAACTGAATTTAAAATTTA+CGG - chr1_1:73106973-73106992 Msa0042310:intron 10.0%
!! TGAATAGAAATAATTATAAA+TGG + chr1_1:73107031-73107050 None:intergenic 10.0%
!! AAAATCAAATTTCTTAAGAA+CGG + chr1_1:73105220-73105239 None:intergenic 15.0%
!! TTAATCAATATACAAAAATC+AGG + chr1_1:73105774-73105793 None:intergenic 15.0%
!!! AAAGAAATAGTTTTTTTTAG+GGG - chr1_1:73106146-73106165 Msa0042310:intron 15.0%
!!! TTTTTTTGAAGGAAATATAT+TGG - chr1_1:73106204-73106223 Msa0042310:intron 15.0%
!!! GAAAAAGAGTAAAAAATTTT+TGG + chr1_1:73106270-73106289 None:intergenic 15.0%
!! AATTTATATTTATACTCTTC+AGG - chr1_1:73106680-73106699 Msa0042310:intron 15.0%
!! ATTTATATTTATACTCTTCA+GGG - chr1_1:73106681-73106700 Msa0042310:intron 15.0%
!! AATTTATATTTATACTCTTC+AGG - chr1_1:73106680-73106699 Msa0042310:intron 15.0%
!! ATTTATATTTATACTCTTCA+GGG - chr1_1:73106681-73106700 Msa0042310:intron 15.0%
!! GTTAAATATATAAAGGATAA+AGG + chr1_1:73106958-73106977 None:intergenic 15.0%
!! TCTTCTTATCATAATGATAT+TGG - chr1_1:73105099-73105118 Msa0042310:CDS 20.0%
!!! GTTCTTAAGAAATTTGATTT+TGG - chr1_1:73105219-73105238 Msa0042310:CDS 20.0%
!!! TAAGAAATTTGATTTTGGTA+AGG - chr1_1:73105224-73105243 Msa0042310:CDS 20.0%
!!! AGTAGATTATTTTGATATGT+AGG + chr1_1:73105579-73105598 None:intergenic 20.0%
!! AAATAATCTACTGTCATATT+TGG - chr1_1:73105587-73105606 Msa0042310:CDS 20.0%
!! CTTTGCAACAAATAAAAAAA+AGG - chr1_1:73105810-73105829 Msa0042310:CDS 20.0%
!! TTTATACTATGTATAAAAGG+TGG - chr1_1:73106498-73106517 Msa0042310:intron 20.0%
!!! TATAACAAAAAGTATTCAGA+CGG - chr1_1:73107502-73107521 Msa0042310:intron 20.0%
! ATCGTTCTATGATCAAATTA+AGG - chr1_1:73105122-73105141 Msa0042310:CDS 25.0%
!! GATTTTGTGTGAAATTTCAA+AGG + chr1_1:73105283-73105302 None:intergenic 25.0%
! ATTTCCTCATATTCTTCAAT+AGG + chr1_1:73105342-73105361 None:intergenic 25.0%
! GACAATCATCATAATAATTC+AGG - chr1_1:73105474-73105493 Msa0042310:CDS 25.0%
! AAGATTACTGTTACTCTTAT+CGG + chr1_1:73105532-73105551 None:intergenic 25.0%
! TTCAACAAGATATGTTCTAT+TGG - chr1_1:73105845-73105864 Msa0042310:CDS 25.0%
! GAAGACTATCTATTGTTTAA+AGG + chr1_1:73106338-73106357 None:intergenic 25.0%
!!! TTCCAACTTTTTTTTTTTGG+TGG + chr1_1:73106573-73106592 None:intergenic 25.0%
! ACCAAAAAAAAAAAGTTGGA+AGG - chr1_1:73106572-73106591 Msa0042310:intron 25.0%
!!! TCCTTCCAACTTTTTTTTTT+TGG + chr1_1:73106576-73106595 None:intergenic 25.0%
!! AAAAAAAGTTGGAAGGATTT+TGG - chr1_1:73106579-73106598 Msa0042310:intron 25.0%
!! AAAAAAGTTGGAAGGATTTT+GGG - chr1_1:73106580-73106599 Msa0042310:intron 25.0%
! ATTGTGAAGAAACAGATAAA+AGG - chr1_1:73107929-73107948 Msa0042310:CDS 25.0%
! TTGTGAAGAAACAGATAAAA+GGG - chr1_1:73107930-73107949 Msa0042310:CDS 25.0%
AACAATAACTCAACTCCAAT+TGG - chr1_1:73105312-73105331 Msa0042310:CDS 30.0%
TGTTCCTATTGAAGAATATG+AGG - chr1_1:73105335-73105354 Msa0042310:CDS 30.0%
TAACAGTAATCTTGTGCATA+AGG - chr1_1:73105539-73105558 Msa0042310:CDS 30.0%
TGTGCATAAGGAATAGTATT+TGG - chr1_1:73105551-73105570 Msa0042310:CDS 30.0%
TAATCTACTGTCATATTTGG+AGG - chr1_1:73105590-73105609 Msa0042310:CDS 30.0%
!! ACTTTGAAGCATTTGCAATA+TGG + chr1_1:73105647-73105666 None:intergenic 30.0%
AAATGCTTCAAAGTCTAGAA+CGG - chr1_1:73105653-73105672 Msa0042310:CDS 30.0%
AAATCAGGAAATTGCTCATT+AGG + chr1_1:73105759-73105778 None:intergenic 30.0%
!! TCATGTCTCTTTAAAATCCA+AGG + chr1_1:73105886-73105905 None:intergenic 30.0%
ACTATGTATAAAAGGTGGTT+TGG - chr1_1:73106503-73106522 Msa0042310:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr1_1:73106525-73106544 Msa0042310:intron 30.0%
!!! CAACTTTTTTTTTTTGGTGG+TGG + chr1_1:73106570-73106589 None:intergenic 30.0%
CACCACCAAAAAAAAAAAGT+TGG - chr1_1:73106568-73106587 Msa0042310:intron 30.0%
! CTTGATTAGTTAGACAATGA+CGG + chr1_1:73106931-73106950 None:intergenic 30.0%
AACTACCATCAACAAACAAA+CGG - chr1_1:73107063-73107082 Msa0042310:intron 30.0%
TGGTTCAATACTCTAATATG+CGG - chr1_1:73107087-73107106 Msa0042310:intron 30.0%
ATACTCTAATATGCGGAAAA+TGG - chr1_1:73107094-73107113 Msa0042310:intron 30.0%
TTCTTCTTCTTCTTCTTCTT+CGG + chr1_1:73107200-73107219 None:intergenic 30.0%
CATTGTATGGACATAGAAAA+TGG + chr1_1:73107318-73107337 None:intergenic 30.0%
! TTTTCTATGTCCATACAATG+TGG - chr1_1:73107318-73107337 Msa0042310:intron 30.0%
TTAAACAATATCAGAGGCTA+TGG - chr1_1:73107527-73107546 Msa0042310:intron 30.0%
GCAAATACTACTATTCAAAG+CGG - chr1_1:73107613-73107632 Msa0042310:intron 30.0%
AGAAGTTACGTAGGTTAAAA+AGG - chr1_1:73107704-73107723 Msa0042310:intron 30.0%
TTAACGTTGTCAATAAGATC+AGG + chr1_1:73107886-73107905 None:intergenic 30.0%
TATTGACAACGTTAAGATGA+AGG - chr1_1:73107891-73107910 Msa0042310:CDS 30.0%
ATGATAAGAAGATCCACGAT+TGG + chr1_1:73105091-73105110 None:intergenic 35.0%
TCTTCAATAGGAACACCAAT+TGG + chr1_1:73105330-73105349 None:intergenic 35.0%
AATGAGCTGAATTAGGGTTA+GGG + chr1_1:73105374-73105393 None:intergenic 35.0%
AAATGAGCTGAATTAGGGTT+AGG + chr1_1:73105375-73105394 None:intergenic 35.0%
CAGTCAAATGAGCTGAATTA+GGG + chr1_1:73105380-73105399 None:intergenic 35.0%
TCAGTCAAATGAGCTGAATT+AGG + chr1_1:73105381-73105400 None:intergenic 35.0%
TTCACAATCGTAACTTCTGA+TGG - chr1_1:73105689-73105708 Msa0042310:CDS 35.0%
TCACAATCGTAACTTCTGAT+GGG - chr1_1:73105690-73105709 Msa0042310:CDS 35.0%
!! GGGGTATTTTATGAAGTTTG+AGG - chr1_1:73105711-73105730 Msa0042310:CDS 35.0%
GGATATTATTATCGTGTCCT+TGG - chr1_1:73105866-73105885 Msa0042310:CDS 35.0%
AGACATGAACAATAGTCTAG+TGG - chr1_1:73105898-73105917 Msa0042310:CDS 35.0%
GTTATGCAGATGATTGTTCT+CGG - chr1_1:73105978-73105997 Msa0042310:CDS 35.0%
TTATGCAGATGATTGTTCTC+GGG - chr1_1:73105979-73105998 Msa0042310:CDS 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr1_1:73106530-73106549 Msa0042310:intron 35.0%
CGAAGGTTAAAGTTTCAAGA+AGG + chr1_1:73106898-73106917 None:intergenic 35.0%
GACAAAATCCAAGAAACCAA+TGG + chr1_1:73107151-73107170 None:intergenic 35.0%
TGACAATGTTGAAGACCAAA+TGG - chr1_1:73107267-73107286 Msa0042310:intron 35.0%
!! TTTTGAGCGTGTTGTTATAG+TGG + chr1_1:73107476-73107495 None:intergenic 35.0%
CTGGATTACATTAAACAGCA+TGG - chr1_1:73107586-73107605 Msa0042310:intron 35.0%
TTGAATTCCACGCTGAATTT+GGG + chr1_1:73107667-73107686 None:intergenic 35.0%
AAGGAAACACAAGATGACTT+TGG - chr1_1:73107723-73107742 Msa0042310:CDS 35.0%
TGAGGGATCTTGAAAGAAAT+CGG + chr1_1:73107766-73107785 None:intergenic 35.0%
CTTGTGGGAAATTTCGAAAA+TGG + chr1_1:73107797-73107816 None:intergenic 35.0%
TCGAAATTTCCCACAAGATT+TGG - chr1_1:73107800-73107819 Msa0042310:intron 35.0%
CGAAATTTCCCACAAGATTT+GGG - chr1_1:73107801-73107820 Msa0042310:intron 35.0%
GAAATTTCCCACAAGATTTG+GGG - chr1_1:73107802-73107821 Msa0042310:intron 35.0%
TCAATAAGATCAGGACTTTC+AGG + chr1_1:73107877-73107896 None:intergenic 35.0%
ACGTGAACACAAAAAATGAC+CGG - chr1_1:73107986-73108005 Msa0042310:intron 35.0%
ACAAAAAATGACCGGAACAA+TGG - chr1_1:73107994-73108013 Msa0042310:intron 35.0%
! TTGTTTCTCACCATTGTTGA+AGG - chr1_1:73108062-73108081 Msa0042310:intron 35.0%
ACCATTGTTGAAGGAACTAT+TGG - chr1_1:73108071-73108090 Msa0042310:intron 35.0%
TCCAATAGTTCCTTCAACAA+TGG + chr1_1:73108075-73108094 None:intergenic 35.0%
GGGATGAACAATGGTTAAAA+CGG - chr1_1:73108154-73108173 Msa0042310:CDS 35.0%
ATGAACAATGGTTAAAACGG+AGG - chr1_1:73108157-73108176 Msa0042310:CDS 35.0%
! ATGGTTAAAACGGAGGATTT+TGG - chr1_1:73108164-73108183 Msa0042310:CDS 35.0%
! AACTGGAGGTGTATTTGAAT+CGG - chr1_1:73108187-73108206 Msa0042310:CDS 35.0%
! AGAAGCTTTTCCAATGTCTC+TGG - chr1_1:73105016-73105035 Msa0042310:CDS 40.0%
CTTCTTTAGTCCAGAGACAT+TGG + chr1_1:73105029-73105048 None:intergenic 40.0%
! CTTATCAACAAGCTAGCTCT+TGG + chr1_1:73105169-73105188 None:intergenic 40.0%
!! AGCTTGTTGATAAGCTTCGA+AGG - chr1_1:73105175-73105194 Msa0042310:CDS 40.0%
CTGAATTAGGGTTAGGGTTT+GGG + chr1_1:73105368-73105387 None:intergenic 40.0%
TACGATTGTGAACGATGGTT+AGG + chr1_1:73105681-73105700 None:intergenic 40.0%
GAAGTTACGATTGTGAACGA+TGG + chr1_1:73105686-73105705 None:intergenic 40.0%
CACAATCGTAACTTCTGATG+GGG - chr1_1:73105691-73105710 Msa0042310:CDS 40.0%
ACAATCGTAACTTCTGATGG+GGG - chr1_1:73105692-73105711 Msa0042310:CDS 40.0%
GCTCATTAGGCATTTCAGAT+CGG + chr1_1:73105746-73105765 None:intergenic 40.0%
CTGAGATGATTCTCATGTGT+GGG - chr1_1:73105945-73105964 Msa0042310:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr1_1:73106531-73106550 Msa0042310:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr1_1:73106532-73106551 Msa0042310:intron 40.0%
!!! TTTTTTTTTGGTGGTGGCCA+GGG + chr1_1:73106564-73106583 None:intergenic 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+AGG + chr1_1:73106565-73106584 None:intergenic 40.0%
TCTTCAGGGACGTTACATTA+CGG - chr1_1:73106695-73106714 Msa0042310:intron 40.0%
TCTTCAGGGACGTTACATTA+CGG - chr1_1:73106695-73106714 Msa0042310:intron 40.0%
ACCATCAACAAACAAACGGT+TGG - chr1_1:73107067-73107086 Msa0042310:intron 40.0%
! ACCAACCGTTTGTTTGTTGA+TGG + chr1_1:73107071-73107090 None:intergenic 40.0%
!! CAATGGTGAAAGCATTGTTG+AGG + chr1_1:73107134-73107153 None:intergenic 40.0%
CTCAACAATGCTTTCACCAT+TGG - chr1_1:73107132-73107151 Msa0042310:intron 40.0%
!! TGCTTTCACCATTGGTTTCT+TGG - chr1_1:73107140-73107159 Msa0042310:intron 40.0%
TGAAGACCAAATGGACAATG+TGG - chr1_1:73107276-73107295 Msa0042310:intron 40.0%
CATCATCCACATTGTCCATT+TGG + chr1_1:73107285-73107304 None:intergenic 40.0%
! CAATGTGGATGATGACGAAA+AGG - chr1_1:73107291-73107310 Msa0042310:intron 40.0%
TGGTCTTCATCCACATTGTA+TGG + chr1_1:73107331-73107350 None:intergenic 40.0%
CAATGTGGATGAAGACCAAA+TGG - chr1_1:73107333-73107352 Msa0042310:intron 40.0%
CAATGGGAATGTTGTCCATT+TGG + chr1_1:73107351-73107370 None:intergenic 40.0%
ACGGCGTTAAACAATATCAG+AGG - chr1_1:73107521-73107540 Msa0042310:intron 40.0%
GACGAGATTGAACTGTTGAA+GGG - chr1_1:73107559-73107578 Msa0042310:intron 40.0%
TGAACTGTTGAAGGGATATC+TGG - chr1_1:73107567-73107586 Msa0042310:intron 40.0%
AGTTATTCCCAAATTCAGCG+TGG - chr1_1:73107657-73107676 Msa0042310:intron 40.0%
GTTGAATTCCACGCTGAATT+TGG + chr1_1:73107668-73107687 None:intergenic 40.0%
AATTCAGCGTGGAATTCAAC+AGG - chr1_1:73107668-73107687 Msa0042310:intron 40.0%
TACGTAACTTCTCAACAAGC+TGG + chr1_1:73107696-73107715 None:intergenic 40.0%
!! AGCTTGTTGAGAAGTTACGT+AGG - chr1_1:73107695-73107714 Msa0042310:intron 40.0%
CACAAGATGACTTTGGACAA+AGG - chr1_1:73107730-73107749 Msa0042310:CDS 40.0%
GATTTCTTTCAAGATCCCTC+AGG - chr1_1:73107765-73107784 Msa0042310:CDS 40.0%
AACTTCCAAAACGTCATGGT+CGG + chr1_1:73107836-73107855 None:intergenic 40.0%
CATCAACTTCCAAAACGTCA+TGG + chr1_1:73107840-73107859 None:intergenic 40.0%
TAGTAGCATTGCCATTGTTC+CGG + chr1_1:73108008-73108027 None:intergenic 40.0%
ATGGCAATGCTACTAGCATA+CGG - chr1_1:73108013-73108032 Msa0042310:intron 40.0%
TGGTGAGAAACAAGACTTCA+TGG + chr1_1:73108055-73108074 None:intergenic 40.0%
TCCCTTGTCGATAACAACAT+CGG + chr1_1:73108129-73108148 None:intergenic 40.0%
!!! AAAACGGAGGATTTTGGAAC+TGG - chr1_1:73108170-73108189 Msa0042310:CDS 40.0%
GACGAGATTACGATCTTGCA+AGG - chr1_1:73105048-73105067 Msa0042310:CDS 45.0%
GCTGAATTAGGGTTAGGGTT+TGG + chr1_1:73105369-73105388 None:intergenic 45.0%
GAGATTGCGAGCATCTTAGT+AGG - chr1_1:73105425-73105444 Msa0042310:CDS 45.0%
GCTGAGATGATTCTCATGTG+TGG - chr1_1:73105944-73105963 Msa0042310:CDS 45.0%
AGACATTTGTGTGACCATCC+TGG + chr1_1:73106017-73106036 None:intergenic 45.0%
TTCAAGAAGGCTTAGAGCCT+CGG + chr1_1:73106885-73106904 None:intergenic 45.0%
! ATGACGGTCGTTGATTACGA+AGG + chr1_1:73106915-73106934 None:intergenic 45.0%
TTCTTCTTCGGATGACGAAG+AGG + chr1_1:73107188-73107207 None:intergenic 45.0%
TCAGAAACGGCAAGTGCAAT+GGG + chr1_1:73107367-73107386 None:intergenic 45.0%
ATCAGAAACGGCAAGTGCAA+TGG + chr1_1:73107368-73107387 None:intergenic 45.0%
GGACGAGATTGAACTGTTGA+AGG - chr1_1:73107558-73107577 Msa0042310:intron 45.0%
GACTTTGGACAAAGGCAAAG+AGG - chr1_1:73107738-73107757 Msa0042310:CDS 45.0%
!! CGAAAATGGCTTGTTCCTGA+GGG + chr1_1:73107783-73107802 None:intergenic 45.0%
!! TCGAAAATGGCTTGTTCCTG+AGG + chr1_1:73107784-73107803 None:intergenic 45.0%
GTCATTGCCCCAAATCTTGT+GGG + chr1_1:73107812-73107831 None:intergenic 45.0%
TGTCATTGCCCCAAATCTTG+TGG + chr1_1:73107813-73107832 None:intergenic 45.0%
AGATCAGGACTTTCAGGAAC+AGG + chr1_1:73107871-73107890 None:intergenic 45.0%
TGGCAATGCTACTAGCATAC+GGG - chr1_1:73108014-73108033 Msa0042310:intron 45.0%
GCCGATGTTGTTATCGACAA+GGG - chr1_1:73108125-73108144 Msa0042310:CDS 45.0%
TGTTATCGACAAGGGAAGTG+AGG - chr1_1:73108133-73108152 Msa0042310:CDS 45.0%
GTTATCGACAAGGGAAGTGA+GGG - chr1_1:73108134-73108153 Msa0042310:CDS 45.0%
! GGAGGTGTATTTGAATCGGT+TGG - chr1_1:73108191-73108210 Msa0042310:CDS 45.0%
AATCGGTTGGAGTTGTTGCA+AGG - chr1_1:73108204-73108223 Msa0042310:CDS 45.0%
GTTGTTGCAAGGTCAGATCA+AGG - chr1_1:73108215-73108234 Msa0042310:CDS 45.0%
!!! AATAAATTATTATTTTTTGA+AGG + chr1_1:73106060-73106079 None:intergenic 5.0%
CTCGATTACAACGCCAATCG+TGG - chr1_1:73105075-73105094 Msa0042310:CDS 50.0%
GGCAATGATACTGACCAGGA+TGG - chr1_1:73106000-73106019 Msa0042310:CDS 50.0%
TTAGAGCCTCGGCTTCTGAA+GGG + chr1_1:73106874-73106893 None:intergenic 50.0%
AACGGGGGATGCATCAGAAA+CGG + chr1_1:73107380-73107399 None:intergenic 50.0%
TGCCGTGTTTGTGTCATCTG+CGG + chr1_1:73107425-73107444 None:intergenic 50.0%
TATAGTGGTAGTAGCCACCG+TGG + chr1_1:73107461-73107480 None:intergenic 50.0%
TCAGAGGCTATGGACAAAGC+AGG - chr1_1:73107537-73107556 Msa0042310:intron 50.0%
! TGACACCGACCATGACGTTT+TGG - chr1_1:73107828-73107847 Msa0042310:intron 50.0%
GGCAATGCTACTAGCATACG+GGG - chr1_1:73108015-73108034 Msa0042310:intron 50.0%
CGCCGATGTTGTTATCGACA+AGG - chr1_1:73108124-73108143 Msa0042310:CDS 50.0%
GGGAAGTGAGGGATGAACAA+TGG - chr1_1:73108145-73108164 Msa0042310:CDS 50.0%
!!! ACGGAGGATTTTGGAACTGG+AGG - chr1_1:73108173-73108192 Msa0042310:CDS 50.0%
TGCAAGGTCAGATCAAGGCT+AGG - chr1_1:73108220-73108239 Msa0042310:CDS 50.0%
AGGTCAGATCAAGGCTAGGT+TGG - chr1_1:73108224-73108243 Msa0042310:CDS 50.0%
! TCAGATCAAGGCTAGGTTGG+AGG - chr1_1:73108227-73108246 Msa0042310:CDS 50.0%
CTCGGGCAATGATACTGACC+AGG - chr1_1:73105996-73106015 Msa0042310:CDS 55.0%
! TAGAGCCTCGGCTTCTGAAG+GGG + chr1_1:73106873-73106892 None:intergenic 55.0%
CTTAGAGCCTCGGCTTCTGA+AGG + chr1_1:73106875-73106894 None:intergenic 55.0%
TGATGCATCCCCCGTTGTGA+CGG - chr1_1:73107384-73107403 Msa0042310:intron 55.0%
CGTGTTTGTGTCATCTGCGG+GGG + chr1_1:73107422-73107441 None:intergenic 55.0%
CCGTGTTTGTGTCATCTGCG+GGG + chr1_1:73107423-73107442 None:intergenic 55.0%
CCCCGCAGATGACACAAACA+CGG - chr1_1:73107420-73107439 Msa0042310:intron 55.0%
GCCGTGTTTGTGTCATCTGC+GGG + chr1_1:73107424-73107443 None:intergenic 55.0%
GGCAACAAACACAGCCACCA+CGG - chr1_1:73107441-73107460 Msa0042310:intron 55.0%
AACAAACACAGCCACCACGG+TGG - chr1_1:73107444-73107463 Msa0042310:intron 55.0%
AACAACATCGGCGACGCACT+GGG + chr1_1:73108117-73108136 None:intergenic 55.0%
TAACAACATCGGCGACGCAC+TGG + chr1_1:73108118-73108137 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+TGG - chr1_1:73106544-73106563 Msa0042310:intron 60.0%
GTCTTCCCCTTCAGAAGCCG+AGG - chr1_1:73106865-73106884 Msa0042310:intron 60.0%
AGCCATGGCCACCGTCACAA+CGG + chr1_1:73107398-73107417 None:intergenic 60.0%
AGTGGTAGTAGCCACCGTGG+TGG + chr1_1:73107458-73107477 None:intergenic 60.0%
GGTGGCCAGGGTTTGAACCC+CGG + chr1_1:73106552-73106571 None:intergenic 65.0%
TGCATCCCCCGTTGTGACGG+TGG - chr1_1:73107387-73107406 Msa0042310:intron 65.0%
CATGGCCACCGTCACAACGG+GGG + chr1_1:73107395-73107414 None:intergenic 65.0%
CCATGGCCACCGTCACAACG+GGG + chr1_1:73107396-73107415 None:intergenic 65.0%
GCCATGGCCACCGTCACAAC+GGG + chr1_1:73107397-73107416 None:intergenic 65.0%
! GACGCACTGGGTGGCTCTAC+TGG + chr1_1:73108105-73108124 None:intergenic 65.0%
AACATCGGCGACGCACTGGG+TGG + chr1_1:73108114-73108133 None:intergenic 65.0%
CCCCGTTGTGACGGTGGCCA+TGG - chr1_1:73107393-73107412 Msa0042310:intron 70.0%
GTCATCTGCGGGGGCAGCCA+TGG + chr1_1:73107413-73107432 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73104991 73108272 73104991 ID=Msa0042310;Name=Msa0042310
chr1_1 mRNA 73104991 73108272 73104991 ID=Msa0042310-mRNA-1;Parent=Msa0042310;Name=Msa0042310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|0.33|0.25|4|0|479
chr1_1 exon 73108102 73108272 73108102 ID=Msa0042310-mRNA-1:exon:24427;Parent=Msa0042310-mRNA-1
chr1_1 exon 73107856 73107957 73107856 ID=Msa0042310-mRNA-1:exon:24426;Parent=Msa0042310-mRNA-1
chr1_1 exon 73107720 73107816 73107720 ID=Msa0042310-mRNA-1:exon:24425;Parent=Msa0042310-mRNA-1
chr1_1 exon 73104991 73106060 73104991 ID=Msa0042310-mRNA-1:exon:24424;Parent=Msa0042310-mRNA-1
chr1_1 CDS 73108102 73108272 73108102 ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1
chr1_1 CDS 73107856 73107957 73107856 ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1
chr1_1 CDS 73107720 73107816 73107720 ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1
chr1_1 CDS 73104991 73106060 73104991 ID=Msa0042310-mRNA-1:cds;Parent=Msa0042310-mRNA-1
Gene Sequence

>Msa0042310

ATGGAAGAGAAGAACAACGATTCACAGAAGCTTTTCCAATGTCTCTGGACTAAAGAAGACGAGATTACGATCTTGCAAGGTTTGCTCGATTACAACGCCAATCGTGGATCTTCTTATCATAATGATATTGGATCGTTCTATGATCAAATTAAGGCAAAGATTCAACTCGATAACTGTAACAATAACTCAACTCCAATTGGTGTTCCTATTGAAGAATATGAGGAAATCATCCCAAACCCTAACCCTAATTCAGCTCATTTGACTGAGAAGAAAGAGAAGCGTGAGTTGAATGATTCTAAAGACAATCATCATAATAATTCAGGTAATAACAATAATAGCAATGTTGAAGAAAATGCCGATAAGAGTAACAAAGAAGAAGAAGAAGAAAGTCTTGACATTAACAATGACGAAGCAGACTATGAAAACTTTGAAAATGACAATGTTGAAGACCAAATGGACAATGTGGATGATGACGAAAAGGACCATTTTCTATGTCCATACAATGTGGATGAAGACCAAATGGACAACATTCCCATTGCACTTGCCGTTTCTGATGCATCCCCCGTTGTGACGGTGGCCATGGCTGCCCCCGCAGATGACACAAACACGGCAACAAACACAGCCACCACGGTGGCTACTACCACTATAACAACACGCTCAAAACGACAATATAACAAAAAGTATTCAGACGGCGTTAAACAATATCAGAGGCTATGGACAAAGCAGGACGAGATTGAACTGTTGAAGGGATATCTGGATTACATTAAACAGCATGGAAGAGCAAATACTACTATTCAAAGCGGCGTAGCTTCATTCTATGATCAAGTTATTCCCAAATTCAGCGTGGAATTCAACAGGAACCAGCTTGTTGAGAAGTTACGTAGGTTAAAAAGGAAACACAAGATGACTTTGGACAAAGGCAAAGAGGTTCCGATTTCTTTCAAGATCCCTCAGGAACAAGCCATTTTCGAAATTTCCCACAAGATTTGGGGCAATGACACCGACCATGACGTTTTGGAAGTTGATGAATCAAGACCTGTTCCTGAAAGTCCTGATCTTATTGACAACGTTAAGATGAAGGATGAAGATGTTGACGATTGTGAAGAAACAGATAAAAGGGCGCACAAGCGTGTGAAGATAACAACAGATGACGACGTGAACACAAAAAATGACCGGAACAATGGCAATGCTACTAGCATACGGGGCTTCATTGAAGAAACCATGAAGTCTTGTTTCTCACCATTGTTGAAGGAACTATTGGATGATGTTCCAGTAGAGCCACCCAGTGCGTCGCCGATGTTGTTATCGACAAGGGAAGTGAGGGATGAACAATGGTTAAAACGGAGGATTTTGGAACTGGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAAGGTCAGATCAAGGCTAGGTTGGAGGAGTTAAAGTCTTGCTTAGATTGA

Protein sequence

>Msa0042310

MEEKNNDSQKLFQCLWTKEDEITILQGLLDYNANRGSSYHNDIGSFYDQIKAKIQLDNCNNNSTPIGVPIEEYEEIIPNPNPNSAHLTEKKEKRELNDSKDNHHNNSGNNNNSNVEENADKSNKEEEEESLDINNDEADYENFENDNVEDQMDNVDDDEKDHFLCPYNVDEDQMDNIPIALAVSDASPVVTVAMAAPADDTNTATNTATTVATTTITTRSKRQYNKKYSDGVKQYQRLWTKQDEIELLKGYLDYIKQHGRANTTIQSGVASFYDQVIPKFSVEFNRNQLVEKLRRLKRKHKMTLDKGKEVPISFKIPQEQAIFEISHKIWGNDTDHDVLEVDESRPVPESPDLIDNVKMKDEDVDDCEETDKRAHKRVKITTDDDVNTKNDRNNGNATSIRGFIEETMKSCFSPLLKELLDDVPVEPPSASPMLLSTREVRDEQWLKRRILELEVYLNRLELLQGQIKARLEELKSCLD*