AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042870 MtrunA17_Chr2g0300441 72.881 236 32 1 1 204 1 236 4.30e-119 337
Msa0042870 MtrunA17_Chr7g0238991 69.369 222 35 2 16 204 27 248 8.96e-104 299
Msa0042870 MtrunA17_Chr8g0355091 62.869 237 55 2 1 204 1 237 8.57e-99 286
Msa0042870 MtrunA17_Chr2g0292791 62.162 222 52 1 1 190 1 222 2.45e-90 265
Msa0042870 MtrunA17_Chr1g0206701 60.889 225 56 1 1 193 1 225 8.82e-90 263
Msa0042870 MtrunA17_Chr1g0149391 61.712 222 53 1 1 190 1 222 3.31e-89 261
Msa0042870 MtrunA17_Chr1g0206721 62.162 222 52 1 1 190 1 222 1.34e-88 260
Msa0042870 MtrunA17_Chr3g0099421 59.361 219 57 1 1 187 26 244 3.75e-84 249
Msa0042870 MtrunA17_Chr1g0208561 58.298 235 48 4 1 193 1 227 5.27e-84 248
Msa0042870 MtrunA17_Chr3g0089141 58.298 235 48 4 1 193 1 227 8.56e-83 245
Msa0042870 MtrunA17_Chr2g0325971 59.149 235 46 4 1 193 1 227 2.29e-82 244
Msa0042870 MtrunA17_Chr1g0208581 58.051 236 47 4 1 193 1 227 3.05e-81 241
Msa0042870 MtrunA17_Chr1g0187361 54.222 225 71 1 1 193 1 225 2.09e-77 232
Msa0042870 MtrunA17_Chr1g0206691 55.455 220 65 2 18 204 1 220 3.68e-76 228
Msa0042870 MtrunA17_Chr1g0188671 54.222 225 71 1 1 193 39 263 4.15e-76 230
Msa0042870 MtrunA17_Chr5g0422421 53.778 225 72 1 1 193 1 225 4.45e-76 228
Msa0042870 MtrunA17_Chr2g0317451 51.695 236 81 2 1 203 1 236 3.70e-75 226
Msa0042870 MtrunA17_Chr2g0317481 51.695 236 81 2 1 203 1 236 1.19e-74 224
Msa0042870 MtrunA17_Chr5g0422941 50.211 237 85 2 1 204 1 237 7.52e-73 220
Msa0042870 MtrunA17_Chr5g0419601 51.111 225 78 1 1 193 1 225 1.36e-69 212
Msa0042870 MtrunA17_Chr1g0206991 59.669 181 41 1 1 149 1 181 7.69e-68 206
Msa0042870 MtrunA17_Chr3g0099411 53.604 222 52 3 1 190 1 203 3.90e-66 202
Msa0042870 MtrunA17_Chr3g0089151 66.667 132 12 1 1 100 1 132 2.18e-50 159
Msa0042870 MtrunA17_Chr2g0300421 55.224 134 28 1 1 102 1 134 2.66e-36 125
Msa0042870 MtrunA17_Chr3g0085241 38.636 176 76 1 3 146 35 210 6.74e-33 118
Msa0042870 MtrunA17_Chr3g0119901 41.447 152 57 1 9 128 9 160 2.11e-31 113
Msa0042870 MtrunA17_Chr8g0379021 35.802 162 76 1 5 138 8 169 2.16e-24 94.7
Msa0042870 MtrunA17_Chr2g0333981 34.591 159 76 1 5 135 8 166 7.85e-23 90.5
Msa0042870 MtrunA17_Chr3g0111841 78.723 47 10 0 15 61 2 48 1.72e-19 79.0
Msa0042870 MtrunA17_Chr1g0187351 75.000 44 11 0 18 61 1 44 3.68e-16 70.1
Msa0042870 MtrunA17_Chr5g0425191 52.542 59 27 1 9 66 2 60 1.32e-14 67.0
Msa0042870 MtrunA17_Chr4g0071601 33.136 169 75 4 5 135 8 176 2.38e-14 68.2
Msa0042870 MtrunA17_Chr4g0018951 36.154 130 55 2 22 127 25 150 6.22e-14 67.0
Msa0042870 MtrunA17_Chr1g0175611 59.184 49 20 0 9 57 2 50 7.65e-14 66.6
Msa0042870 MtrunA17_Chr3g0111831 65.217 46 16 0 16 61 11 56 9.54e-14 64.3
Msa0042870 MtrunA17_Chr4g0044071 51.923 52 25 0 9 60 2 53 1.15e-13 64.7
Msa0042870 MtrunA17_Chr1g0169761 53.704 54 25 0 9 62 2 55 1.23e-13 66.2
Msa0042870 MtrunA17_Chr4g0074101 53.704 54 25 0 9 62 2 55 1.43e-13 66.6
Msa0042870 MtrunA17_Chr8g0376821 53.704 54 25 0 9 62 2 55 1.67e-13 65.9
Msa0042870 MtrunA17_Chr4g0049901 58.824 51 21 0 10 60 29 79 3.17e-13 66.2
Msa0042870 MtrunA17_Chr3g0134451 56.604 53 23 0 9 61 2 54 6.09e-13 66.2
Msa0042870 MtrunA17_Chr1g0175601 52.941 51 24 0 9 59 2 52 1.92e-12 63.2
Msa0042870 MtrunA17_Chr1g0173161 51.852 54 26 0 9 62 2 55 2.00e-12 60.8
Msa0042870 MtrunA17_Chr1g0159661 50.000 54 27 0 9 62 2 55 2.49e-12 62.8
Msa0042870 MtrunA17_Chr1g0180591 53.061 49 23 0 9 57 2 50 3.32e-12 62.4
Msa0042870 MtrunA17_Chr3g0097101 54.545 55 25 0 3 57 11 65 3.67e-12 63.5
Msa0042870 MtrunA17_Chr2g0308251 51.852 54 26 0 9 62 2 55 4.21e-12 59.7
Msa0042870 MtrunA17_Chr8g0357771 51.852 54 26 0 9 62 2 55 4.25e-12 62.0
Msa0042870 MtrunA17_Chr4g0057151 37.288 118 63 4 10 124 3 112 4.36e-12 62.4
Msa0042870 MtrunA17_Chr6g0474371 44.615 65 34 1 7 71 2 64 6.92e-12 62.0
Msa0042870 MtrunA17_Chr5g0412271 51.923 52 25 0 9 60 2 53 7.55e-12 62.4
Msa0042870 MtrunA17_Chr7g0246381 48.077 52 27 0 9 60 2 53 9.71e-12 58.5
Msa0042870 MtrunA17_Chr5g0412461 51.923 52 25 0 9 60 2 53 1.01e-11 62.0
Msa0042870 MtrunA17_Chr5g0427921 44.444 54 30 0 9 62 2 55 1.38e-11 57.8
Msa0042870 MtrunA17_Chr5g0427401 49.123 57 29 0 9 65 2 58 1.41e-11 61.6
Msa0042870 MtrunA17_Chr3g0125241 30.909 110 59 1 9 101 27 136 1.48e-11 61.2
Msa0042870 MtrunA17_Chr3g0077501 55.102 49 22 0 9 57 2 50 1.73e-11 61.2
Msa0042870 MtrunA17_Chr3g0142191 48.148 54 28 0 9 62 2 55 1.89e-11 61.2
Msa0042870 MtrunA17_Chr2g0284911 55.102 49 22 0 9 57 17 65 2.46e-11 61.2
Msa0042870 MtrunA17_Chr5g0404951 50.000 54 27 0 9 62 2 55 2.59e-11 60.8
Msa0042870 MtrunA17_Chr4g0061691 54.000 50 21 1 7 56 2 49 2.69e-11 60.8
Msa0042870 MtrunA17_Chr8g0356071 51.852 54 26 0 9 62 2 55 2.89e-11 59.7
Msa0042870 MtrunA17_Chr8g0377561 46.296 54 29 0 9 62 2 55 3.19e-11 57.8
Msa0042870 MtrunA17_Chr8g0380021 56.250 48 21 0 9 56 18 65 3.36e-11 60.8
Msa0042870 MtrunA17_Chr4g0020221 56.250 48 21 0 9 56 2 49 3.93e-11 60.5
Msa0042870 MtrunA17_Chr8g0351051 47.541 61 30 1 7 67 2 60 4.07e-11 60.5
Msa0042870 MtrunA17_Chr1g0164791 42.029 69 37 1 9 77 2 67 4.56e-11 60.1
Msa0042870 MtrunA17_Chr5g0420081 50.000 48 24 0 9 56 2 49 5.35e-11 60.1
Msa0042870 MtrunA17_Chr8g0366231 52.083 48 23 0 9 56 2 49 5.46e-11 60.1
Msa0042870 MtrunA17_Chr8g0351041 54.167 48 22 0 10 57 3 50 6.28e-11 58.5
Msa0042870 MtrunA17_Chr7g0246431 45.763 59 32 0 10 68 3 61 6.41e-11 59.3
Msa0042870 MtrunA17_Chr5g0420091 46.296 54 29 0 9 62 2 55 9.24e-11 58.9
Msa0042870 MtrunA17_Chr4g0052081 56.000 50 22 0 9 58 2 51 9.38e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042870 AT5G60440.1 36.777 242 99 6 5 199 3 237 2.14e-32 119
Msa0042870 AT2G24840.1 39.744 156 61 3 9 131 63 218 1.21e-25 100
Msa0042870 AT1G01530.1 38.660 194 80 8 4 158 2 195 5.33e-23 93.2
Msa0042870 AT1G65360.1 34.272 213 96 9 5 173 3 215 1.50e-20 86.3
Msa0042870 AT4G36590.1 70.175 57 17 0 5 61 3 59 2.33e-20 85.9
Msa0042870 AT3G04100.1 49.180 61 31 0 2 62 7 67 8.45e-15 70.5
Msa0042870 AT1G22130.1 53.846 52 24 0 9 60 2 53 1.06e-13 68.9
Msa0042870 AT1G77980.1 53.846 52 24 0 9 60 2 53 1.32e-13 68.6
Msa0042870 AT3G66656.1 57.407 54 23 0 9 62 2 55 3.51e-13 65.5
Msa0042870 AT1G77950.3 50.000 52 26 0 9 60 2 53 1.08e-12 65.5
Msa0042870 AT1G77950.2 50.000 52 26 0 9 60 2 53 1.08e-12 65.5
Msa0042870 AT1G77950.1 50.000 52 26 0 9 60 2 53 1.08e-12 65.5
Msa0042870 AT1G77950.4 50.000 52 26 0 9 60 2 53 1.08e-12 65.5
Msa0042870 AT1G72350.1 48.387 62 32 0 9 70 43 104 1.33e-12 64.7
Msa0042870 AT3G54340.1 38.667 75 46 0 9 83 2 76 1.44e-12 64.7
Msa0042870 AT5G51870.2 58.491 53 22 0 10 62 3 55 1.56e-12 63.5
Msa0042870 AT2G34440.1 57.143 49 21 0 9 57 2 50 2.43e-12 63.2
Msa0042870 AT2G22540.2 47.541 61 32 0 9 69 2 62 2.65e-12 63.9
Msa0042870 AT3G57390.3 48.333 60 31 0 9 68 2 61 2.91e-12 63.9
Msa0042870 AT5G51870.1 58.491 53 22 0 10 62 3 55 3.05e-12 63.5
Msa0042870 AT5G51870.5 58.491 53 22 0 10 62 26 78 3.19e-12 63.2
Msa0042870 AT5G51870.3 58.491 53 22 0 10 62 13 65 4.03e-12 63.5
Msa0042870 AT5G51870.4 58.491 53 22 0 10 62 3 55 4.22e-12 63.2
Msa0042870 AT2G22540.3 51.923 52 25 0 9 60 2 53 4.30e-12 63.5
Msa0042870 AT2G22540.1 51.923 52 25 0 9 60 2 53 4.30e-12 63.5
Msa0042870 AT3G57390.1 48.333 60 31 0 9 68 2 61 5.48e-12 63.5
Msa0042870 AT5G13790.2 57.692 52 22 0 9 60 2 53 6.76e-12 63.2
Msa0042870 AT5G13790.1 57.692 52 22 0 9 60 2 53 7.07e-12 63.2
Msa0042870 AT4G22950.2 52.830 53 25 0 10 62 3 55 9.02e-12 61.6
Msa0042870 AT2G14210.1 36.842 95 54 2 9 103 2 90 9.41e-12 62.4
Msa0042870 AT4G09960.2 55.102 49 22 0 9 57 2 50 1.26e-11 62.0
Msa0042870 AT2G14210.2 36.842 95 54 2 9 103 2 90 1.28e-11 62.0
Msa0042870 AT4G09960.1 55.102 49 22 0 9 57 2 50 1.29e-11 62.0
Msa0042870 AT4G09960.6 55.102 49 22 0 9 57 3 51 1.34e-11 62.0
Msa0042870 AT4G22950.3 52.830 53 25 0 10 62 3 55 1.56e-11 61.6
Msa0042870 AT4G22950.1 52.830 53 25 0 10 62 3 55 1.56e-11 61.6
Msa0042870 AT4G09960.5 55.102 49 22 0 9 57 12 60 1.60e-11 62.0
Msa0042870 AT2G42830.2 53.571 56 24 1 2 57 12 65 2.00e-11 61.6
Msa0042870 AT2G42830.1 53.571 56 24 1 2 57 12 65 2.00e-11 61.6
Msa0042870 AT4G09960.3 54.717 53 22 1 5 57 26 76 2.06e-11 61.6
Msa0042870 AT4G24540.1 51.923 52 25 0 9 60 2 53 2.07e-11 61.2
Msa0042870 AT3G58780.2 54.545 55 23 1 2 56 12 64 2.18e-11 61.6
Msa0042870 AT3G58780.1 54.545 55 23 1 2 56 12 64 2.34e-11 61.6
Msa0042870 AT4G18960.1 52.727 55 26 0 2 56 11 65 2.52e-11 61.6
Msa0042870 AT3G58780.3 48.438 64 31 1 2 65 12 73 2.56e-11 61.6
Msa0042870 AT3G58780.5 54.545 55 23 1 2 56 18 70 2.70e-11 61.6
Msa0042870 AT5G65050.1 28.235 170 93 6 9 177 2 143 2.95e-11 60.5
Msa0042870 AT1G69120.2 56.000 50 20 1 7 56 2 49 2.96e-11 61.2
Msa0042870 AT3G58780.4 48.438 64 31 1 2 65 12 73 3.05e-11 61.6
Msa0042870 AT2G45650.1 47.458 59 31 0 9 67 2 60 3.11e-11 61.2
Msa0042870 AT1G26310.1 54.000 50 21 1 7 56 2 49 3.42e-11 61.2
Msa0042870 AT5G65050.3 28.235 170 93 6 9 177 2 143 3.54e-11 60.5
Msa0042870 AT4G09960.4 54.717 53 22 1 5 57 95 145 3.74e-11 61.6
Msa0042870 AT5G65050.2 28.235 170 93 6 9 177 2 143 3.91e-11 59.7
Msa0042870 AT4G11880.2 50.943 53 26 0 10 62 3 55 4.44e-11 59.7
Msa0042870 AT4G11880.3 50.943 53 26 0 10 62 3 55 4.44e-11 59.7
Msa0042870 AT5G65050.5 47.368 57 30 0 9 65 2 58 4.88e-11 59.7
Msa0042870 AT1G69120.1 56.000 50 20 1 7 56 2 49 5.42e-11 60.5
Msa0042870 AT5G60910.1 51.923 52 25 0 9 60 2 53 5.54e-11 60.5
Msa0042870 AT4G11880.4 50.943 53 26 0 10 62 3 55 6.67e-11 60.1
Msa0042870 AT4G11880.1 50.943 53 26 0 10 62 3 55 6.67e-11 60.1
Msa0042870 AT1G28460.1 46.552 58 31 0 5 62 4 61 6.85e-11 59.3
Msa0042870 AT5G10140.2 48.148 54 28 0 9 62 2 55 8.56e-11 58.5
Msa0042870 AT5G10140.1 39.785 93 48 3 9 100 2 87 9.22e-11 59.3
Msa0042870 AT5G10140.4 48.148 54 28 0 9 62 2 55 9.76e-11 58.9

Find 48 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCTATTCATCCCATTAAT+TGG 0.188775 1_1:-73806199 None:intergenic
TGAATTATTCAAGAAGATTT+TGG 0.197704 1_1:+73806228 Msa0042870:CDS
TTTAATTGGCTTCAACAATA+TGG 0.202381 1_1:+73806438 Msa0042870:CDS
TGGTGGGCTTGTCCAATTAA+TGG 0.226266 1_1:+73806187 Msa0042870:CDS
ATCTCAGTTTGTTGAGGATT+TGG 0.255732 1_1:-73806373 None:intergenic
AAATCATTACCAACAGAAAA+TGG 0.265409 1_1:-73806322 None:intergenic
TGTTGATAGGAATGCAATTC+AGG 0.272177 1_1:+73806279 Msa0042870:CDS
ATGTTGCCACCTCATTTAAT+TGG 0.315102 1_1:+73806424 Msa0042870:CDS
AATATGGGAGGAGGAGGATA+TGG 0.333520 1_1:+73806454 Msa0042870:CDS
AGGCGTTCAAGGCTCAATTT+TGG 0.334747 1_1:+73806167 Msa0042870:CDS
CCTTCTGTGCAAGGCGTTCA+AGG 0.343144 1_1:+73806156 Msa0042870:CDS
GTCCAATTAATGGGATGAAT+AGG 0.357439 1_1:+73806197 Msa0042870:CDS
GTTGAGGATTTGGCTGATAA+TGG 0.362723 1_1:-73806363 None:intergenic
TTGTTGCTCATCATGTTGAT+AGG 0.383033 1_1:+73806266 Msa0042870:CDS
TTAATTGGCTTCAACAATAT+GGG 0.383325 1_1:+73806439 Msa0042870:CDS
TCCAATTAATGGGATGAATA+GGG 0.387257 1_1:+73806198 Msa0042870:CDS
GGTGGGCTTGTCCAATTAAT+GGG 0.390009 1_1:+73806188 Msa0042870:CDS
ATTAAATGAGGTGGCAACAT+AGG 0.450794 1_1:-73806421 None:intergenic
CCTTGAACGCCTTGCACAGA+AGG 0.461164 1_1:-73806156 None:intergenic
AGCATTGAGCTCACACACTT+TGG 0.483043 1_1:-73806074 None:intergenic
AGCAACATCTACACCACAAA+GGG 0.500495 1_1:-73805916 None:intergenic
TGTATTCTCACCTAGTGAAA+AGG 0.501216 1_1:+73805944 Msa0042870:CDS
GGATTTGGCTGATAATGGAT+AGG 0.503948 1_1:-73806358 None:intergenic
TGGAACTTCAATAGAATCCC+GGG 0.508352 1_1:-73806480 None:intergenic
TTAAATGAGGTGGCAACATA+GGG 0.518270 1_1:-73806420 None:intergenic
GTTGATAGGAATGCAATTCA+GGG 0.532097 1_1:+73806280 Msa0042870:CDS
ACCTTTCCTTCCGCTCGACA+TGG 0.533133 1_1:-73805784 None:intergenic
CTGGAACTTCAATAGAATCC+CGG 0.536127 1_1:-73806481 None:intergenic
GGAGGAGGATATGGATCCCC+GGG 0.537493 1_1:+73806463 Msa0042870:CDS
TTCAACAATATGGGAGGAGG+AGG 0.541923 1_1:+73806448 Msa0042870:CDS
ACCATGTCGAGCGGAAGGAA+AGG 0.542544 1_1:+73805783 None:intergenic
GCTCACACACTTTGGCGCTA+CGG 0.546232 1_1:-73806066 None:intergenic
GGCTTCAACAATATGGGAGG+AGG 0.561767 1_1:+73806445 Msa0042870:CDS
AGGAGGAGGATATGGATCCC+CGG 0.564150 1_1:+73806462 Msa0042870:CDS
GGAAACATCTCAGTTTGTTG+AGG 0.570560 1_1:-73806379 None:intergenic
GATTTGGCTGATAATGGATA+GGG 0.572530 1_1:-73806357 None:intergenic
TTGAAGCCAATTAAATGAGG+TGG 0.573603 1_1:-73806430 None:intergenic
CTTCAACCATGTCGAGCGGA+AGG 0.578339 1_1:+73805778 None:intergenic
TTGTTGAAGCCAATTAAATG+AGG 0.592879 1_1:-73806433 None:intergenic
TGAGTTGAGCCTTCTGTGCA+AGG 0.595027 1_1:+73806147 Msa0042870:CDS
ATTGGCTTCAACAATATGGG+AGG 0.605743 1_1:+73806442 Msa0042870:CDS
CTTTCTCAAAACGTCGTAGT+GGG 0.611876 1_1:+73805865 Msa0042870:CDS
ACTTTCTCAAAACGTCGTAG+TGG 0.613494 1_1:+73805864 Msa0042870:CDS
TCGAGCGGAAGGAAAGGTCG+TGG 0.632671 1_1:+73805789 Msa0042870:CDS
AAGCAACATCTACACCACAA+AGG 0.653299 1_1:-73805917 None:intergenic
GGAACTTCAATAGAATCCCG+GGG 0.676688 1_1:-73806479 None:intergenic
AATCAACAACACACTAGACG+AGG 0.684390 1_1:+73806108 Msa0042870:CDS
TGTACTTCAACCATGTCGAG+CGG 0.700229 1_1:+73805774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTATTCAAGAAGATTT+TGG + chr1_1:73806228-73806247 Msa0042870:CDS 20.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr1_1:73805818-73805837 None:intergenic 25.0%
!! ATTATTCAAGAAGATTTTGG+TGG + chr1_1:73806231-73806250 Msa0042870:CDS 25.0%
! AAATCATTACCAACAGAAAA+TGG - chr1_1:73806325-73806344 None:intergenic 25.0%
! ATAGGGTTATGAAAAATTTG+TGG - chr1_1:73806406-73806425 None:intergenic 25.0%
!! TTTAATTGGCTTCAACAATA+TGG + chr1_1:73806438-73806457 Msa0042870:CDS 25.0%
!! TTAATTGGCTTCAACAATAT+GGG + chr1_1:73806439-73806458 Msa0042870:CDS 25.0%
! AGAGAAAATACCTTTTCACT+AGG - chr1_1:73805957-73805976 None:intergenic 30.0%
!!! AGTGAAAAGGTATTTTCTCT+CGG + chr1_1:73805957-73805976 Msa0042870:intron 30.0%
TCCAATTAATGGGATGAATA+GGG + chr1_1:73806198-73806217 Msa0042870:CDS 30.0%
! CAAACTTTTCCATTTTCTGT+TGG + chr1_1:73806313-73806332 Msa0042870:CDS 30.0%
TTGTTGAAGCCAATTAAATG+AGG - chr1_1:73806436-73806455 None:intergenic 30.0%
!!! GTTTTGAGAAAGTCACTTGA+AGG - chr1_1:73805857-73805876 None:intergenic 35.0%
TGTATTCTCACCTAGTGAAA+AGG + chr1_1:73805944-73805963 Msa0042870:CDS 35.0%
TCATAGATTGCTATCTCTCT+GGG + chr1_1:73806000-73806019 Msa0042870:intron 35.0%
GTCCAATTAATGGGATGAAT+AGG + chr1_1:73806197-73806216 Msa0042870:CDS 35.0%
TTGTTGCTCATCATGTTGAT+AGG + chr1_1:73806266-73806285 Msa0042870:CDS 35.0%
! TGTTGATAGGAATGCAATTC+AGG + chr1_1:73806279-73806298 Msa0042870:CDS 35.0%
! GTTGATAGGAATGCAATTCA+GGG + chr1_1:73806280-73806299 Msa0042870:CDS 35.0%
!! GATTTGGCTGATAATGGATA+GGG - chr1_1:73806360-73806379 None:intergenic 35.0%
!! ATCTCAGTTTGTTGAGGATT+TGG - chr1_1:73806376-73806395 None:intergenic 35.0%
GGGTTATGAAAAATTTGTGG+CGG - chr1_1:73806403-73806422 None:intergenic 35.0%
TTAAATGAGGTGGCAACATA+GGG - chr1_1:73806423-73806442 None:intergenic 35.0%
ATTAAATGAGGTGGCAACAT+AGG - chr1_1:73806424-73806443 None:intergenic 35.0%
ATGTTGCCACCTCATTTAAT+TGG + chr1_1:73806424-73806443 Msa0042870:CDS 35.0%
TTGAAGCCAATTAAATGAGG+TGG - chr1_1:73806433-73806452 None:intergenic 35.0%
ACTTTCTCAAAACGTCGTAG+TGG + chr1_1:73805864-73805883 Msa0042870:CDS 40.0%
CTTTCTCAAAACGTCGTAGT+GGG + chr1_1:73805865-73805884 Msa0042870:CDS 40.0%
! AGTGAATTTTGCACCCTTTG+TGG + chr1_1:73805903-73805922 Msa0042870:CDS 40.0%
AGCAACATCTACACCACAAA+GGG - chr1_1:73805919-73805938 None:intergenic 40.0%
AAGCAACATCTACACCACAA+AGG - chr1_1:73805920-73805939 None:intergenic 40.0%
TCTATGACCGTGTCAACATT+TGG - chr1_1:73805987-73806006 None:intergenic 40.0%
GTCATAGATTGCTATCTCTC+TGG + chr1_1:73805999-73806018 Msa0042870:intron 40.0%
CATAGATTGCTATCTCTCTG+GGG + chr1_1:73806001-73806020 Msa0042870:intron 40.0%
!! TTCCATGGTGTTGTTGTTTG+CGG - chr1_1:73806032-73806051 None:intergenic 40.0%
CAACACCATGGAATTCATTG+AGG + chr1_1:73806039-73806058 Msa0042870:intron 40.0%
AATCAACAACACACTAGACG+AGG + chr1_1:73806108-73806127 Msa0042870:CDS 40.0%
!! GTTCAAGGCTCAATTTTGGT+GGG + chr1_1:73806171-73806190 Msa0042870:CDS 40.0%
GCCCTATTCATCCCATTAAT+TGG - chr1_1:73806202-73806221 None:intergenic 40.0%
!! GGATTTGGCTGATAATGGAT+AGG - chr1_1:73806361-73806380 None:intergenic 40.0%
GTTGAGGATTTGGCTGATAA+TGG - chr1_1:73806366-73806385 None:intergenic 40.0%
!! GGAAACATCTCAGTTTGTTG+AGG - chr1_1:73806382-73806401 None:intergenic 40.0%
! ATTGGCTTCAACAATATGGG+AGG + chr1_1:73806442-73806461 Msa0042870:CDS 40.0%
CGGTCATCCAAATGTTGACA+CGG + chr1_1:73805977-73805996 Msa0042870:intron 45.0%
!! ATGGTGTTGTTGTTTGCGGT+GGG - chr1_1:73806028-73806047 None:intergenic 45.0%
GTGAGCCTCAATGAATTCCA+TGG - chr1_1:73806047-73806066 None:intergenic 45.0%
! AGCATTGAGCTCACACACTT+TGG - chr1_1:73806077-73806096 None:intergenic 45.0%
CTAGACGAGGAGAAAAAGCA+TGG + chr1_1:73806121-73806140 Msa0042870:CDS 45.0%
! AGGCGTTCAAGGCTCAATTT+TGG + chr1_1:73806167-73806186 Msa0042870:CDS 45.0%
! CGTTCAAGGCTCAATTTTGG+TGG + chr1_1:73806170-73806189 Msa0042870:CDS 45.0%
!! TGGTGGGCTTGTCCAATTAA+TGG + chr1_1:73806187-73806206 Msa0042870:CDS 45.0%
! GGTGGGCTTGTCCAATTAAT+GGG + chr1_1:73806188-73806207 Msa0042870:CDS 45.0%
TTCAACAATATGGGAGGAGG+AGG + chr1_1:73806448-73806467 Msa0042870:CDS 45.0%
AATATGGGAGGAGGAGGATA+TGG + chr1_1:73806454-73806473 Msa0042870:CDS 45.0%
!! CATGGTGTTGTTGTTTGCGG+TGG - chr1_1:73806029-73806048 None:intergenic 50.0%
CACCGCAAACAACAACACCA+TGG + chr1_1:73806027-73806046 Msa0042870:intron 50.0%
! TGAGTTGAGCCTTCTGTGCA+AGG + chr1_1:73806147-73806166 Msa0042870:CDS 50.0%
GGCTTCAACAATATGGGAGG+AGG + chr1_1:73806445-73806464 Msa0042870:CDS 50.0%
GCTCACACACTTTGGCGCTA+CGG - chr1_1:73806069-73806088 None:intergenic 55.0%
CCTTGAACGCCTTGCACAGA+AGG - chr1_1:73806159-73806178 None:intergenic 55.0%
! CCTTCTGTGCAAGGCGTTCA+AGG + chr1_1:73806156-73806175 Msa0042870:CDS 55.0%
AGGAGGAGGATATGGATCCC+CGG + chr1_1:73806462-73806481 Msa0042870:CDS 55.0%
TCGAGCGGAAGGAAAGGTCG+TGG + chr1_1:73805789-73805808 Msa0042870:CDS 60.0%
GGAGGAGGATATGGATCCCC+GGG + chr1_1:73806463-73806482 Msa0042870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73805786 73806495 73805786 ID=Msa0042870;Name=Msa0042870
chr1_1 mRNA 73805786 73806495 73805786 ID=Msa0042870-mRNA-1;Parent=Msa0042870;Name=Msa0042870-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|204
chr1_1 exon 73805786 73805965 73805786 ID=Msa0042870-mRNA-1:exon:24758;Parent=Msa0042870-mRNA-1
chr1_1 exon 73806061 73806495 73806061 ID=Msa0042870-mRNA-1:exon:24759;Parent=Msa0042870-mRNA-1
chr1_1 CDS 73805786 73805965 73805786 ID=Msa0042870-mRNA-1:cds;Parent=Msa0042870-mRNA-1
chr1_1 CDS 73806061 73806495 73806061 ID=Msa0042870-mRNA-1:cds;Parent=Msa0042870-mRNA-1
Gene Sequence

>Msa0042870

ATGTCGAGCGGAAGGAAAGGTCGTGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACCTTCAAGTGACTTTCTCAAAACGTCGTAGTGGGCTCTTCAAGAAAGTCAGTGAATTTTGCACCCTTTGTGGTGTAGATGTTGCTTTTGTTGTATTCTCACCTAGTGAAAAGGCTCACCGTAGCGCCAAAGTGTGTGAGCTCAATGCTGAGTTGATTCAAATCAACAACACACTAGACGAGGAGAAAAAGCATGGTGATGAGTTGAGCCTTCTGTGCAAGGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTAATGGGATGAATAGGGCTCAACTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCATCATGTTGATAGGAATGCAATTCAGGGTGCTTCAGCTCAAACTTTTCCATTTTCTGTTGGTAATGATTTATCATCTAACATCCCTATCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTCCGCCACAAATTTTTCATAACCCTATGTTGCCACCTCATTTAATTGGCTTCAACAATATGGGAGGAGGAGGATATGGATCCCCGGGATTCTATTGA
Protein sequence

>Msa0042870

MSSGRKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKVSEFCTLCGVDVAFVVFSPSEKAHRSAKVCELNAELIQINNTLDEEKKHGDELSLLCKAFKAQFWWACPINGMNRAQLELFKKILVELKKLVAHHVDRNAIQGASAQTFPFSVGNDLSSNIPIHYQPNPQQTEMFPPQIFHNPMLPPHLIGFNNMGGGGYGSPGFY*