Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043950 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0043950 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043950 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa0043950 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa0043950 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa0043950 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa0043950 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa0043950 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa0043950 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa0043950 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa0043950 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043950 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa0043950 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa0043950 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa0043950 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa0043950 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0043950 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0043950 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | 1_1:+75428899 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | 1_1:-75428423 | Msa0043950:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | 1_1:-75428124 | Msa0043950:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | 1_1:+75428865 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | 1_1:+75428270 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | 1_1:-75428059 | Msa0043950:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | 1_1:+75428131 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | 1_1:-75428123 | Msa0043950:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | 1_1:+75428264 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | 1_1:-75428023 | Msa0043950:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | 1_1:+75428876 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | 1_1:+75428177 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | 1_1:+75428178 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | 1_1:-75428046 | Msa0043950:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | 1_1:+75428891 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | 1_1:+75428922 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | 1_1:+75428900 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | 1_1:-75428214 | Msa0043950:CDS |
| ATTGATGGGCAGACATCATC+AGG | 0.455052 | 1_1:-75428322 | Msa0043950:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | 1_1:-75428373 | Msa0043950:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | 1_1:-75428442 | Msa0043950:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | 1_1:+75428429 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | 1_1:+75428132 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | 1_1:+75428892 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | 1_1:+75428852 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | 1_1:+75428957 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | 1_1:-75428441 | Msa0043950:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | 1_1:-75428259 | Msa0043950:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | 1_1:-75428433 | Msa0043950:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | 1_1:+75428847 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | 1_1:-75428931 | Msa0043950:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | 1_1:-75428237 | Msa0043950:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | 1_1:+75428234 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | 1_1:-75428238 | Msa0043950:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | 1_1:-75428458 | Msa0043950:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | 1_1:-75428122 | Msa0043950:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | 1_1:-75428184 | Msa0043950:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | 1_1:+75428117 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | 1_1:+75428877 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | 1_1:+75428870 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | 1_1:-75428991 | Msa0043950:CDS |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | 1_1:-75428022 | Msa0043950:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | 1_1:+75428430 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | 1_1:-75428213 | Msa0043950:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | 1_1:+75428923 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | 1_1:-75428908 | Msa0043950:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | 1_1:-75428992 | Msa0043950:CDS |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | 1_1:-75428466 | Msa0043950:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | 1_1:-75428170 | Msa0043950:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | 1_1:+75428918 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | 1_1:-75428971 | Msa0043950:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | 1_1:-75428440 | Msa0043950:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | 1_1:+75428831 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | 1_1:-75428108 | Msa0043950:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | 1_1:-75428107 | Msa0043950:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | 1_1:-75428815 | Msa0043950:intron |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | 1_1:-75428907 | Msa0043950:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | 1_1:+75428172 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | 1_1:-75428266 | Msa0043950:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | 1_1:+75428880 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | 1_1:-75428473 | Msa0043950:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | 1_1:-75428248 | Msa0043950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAATTCATGAATATTGA+TGG | - | chr1_1:75428228-75428247 | Msa0043950:CDS | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | chr1_1:75428424-75428443 | None:intergenic | 20.0% |
| !! | ACTTAATTCATGAATATTGA+TGG | - | chr1_1:75428228-75428247 | Msa0043950:CDS | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | chr1_1:75428424-75428443 | None:intergenic | 20.0% |
| ! | AATTCATGAATATTGATGGA+TGG | - | chr1_1:75428232-75428251 | Msa0043950:CDS | 25.0% |
| !! | GTTTAATTTATGATCCGTAA+CGG | + | chr1_1:75428382-75428401 | None:intergenic | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | chr1_1:75428653-75428672 | Msa0043950:intron | 25.0% |
| ! | AATTCATGAATATTGATGGA+TGG | - | chr1_1:75428232-75428251 | Msa0043950:CDS | 25.0% |
| !! | GTTTAATTTATGATCCGTAA+CGG | + | chr1_1:75428382-75428401 | None:intergenic | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | chr1_1:75428653-75428672 | Msa0043950:intron | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | + | chr1_1:75428115-75428134 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | chr1_1:75428166-75428185 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | chr1_1:75428175-75428194 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | chr1_1:75428174-75428193 | Msa0043950:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | chr1_1:75428276-75428295 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | chr1_1:75428276-75428295 | Msa0043950:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | chr1_1:75428280-75428299 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | + | chr1_1:75428314-75428333 | None:intergenic | 30.0% | |
| TGGAACATAAATGAGACATT+AGG | + | chr1_1:75428404-75428423 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | chr1_1:75428516-75428535 | Msa0043950:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | chr1_1:75428652-75428671 | Msa0043950:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | chr1_1:75428775-75428794 | Msa0043950:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | chr1_1:75428776-75428795 | Msa0043950:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | chr1_1:75428860-75428879 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | chr1_1:75428865-75428884 | Msa0043950:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | chr1_1:75428866-75428885 | Msa0043950:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | chr1_1:75428967-75428986 | Msa0043950:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | + | chr1_1:75428115-75428134 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | chr1_1:75428166-75428185 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | chr1_1:75428175-75428194 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | chr1_1:75428174-75428193 | Msa0043950:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | + | chr1_1:75428276-75428295 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | chr1_1:75428276-75428295 | Msa0043950:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | chr1_1:75428280-75428299 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | + | chr1_1:75428314-75428333 | None:intergenic | 30.0% | |
| TGGAACATAAATGAGACATT+AGG | + | chr1_1:75428404-75428423 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | chr1_1:75428516-75428535 | Msa0043950:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | chr1_1:75428652-75428671 | Msa0043950:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | chr1_1:75428775-75428794 | Msa0043950:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | chr1_1:75428776-75428795 | Msa0043950:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | chr1_1:75428860-75428879 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | chr1_1:75428865-75428884 | Msa0043950:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | chr1_1:75428866-75428885 | Msa0043950:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | chr1_1:75428967-75428986 | Msa0043950:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | + | chr1_1:75428035-75428054 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | chr1_1:75428116-75428135 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | chr1_1:75428114-75428133 | Msa0043950:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | - | chr1_1:75428263-75428282 | Msa0043950:CDS | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | chr1_1:75428721-75428740 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | chr1_1:75428722-75428741 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | chr1_1:75428861-75428880 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | chr1_1:75428858-75428877 | Msa0043950:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | chr1_1:75428867-75428886 | Msa0043950:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | chr1_1:75428930-75428949 | Msa0043950:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | chr1_1:75428966-75428985 | Msa0043950:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | chr1_1:75428978-75428997 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | + | chr1_1:75428035-75428054 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | chr1_1:75428116-75428135 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | chr1_1:75428114-75428133 | Msa0043950:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | - | chr1_1:75428263-75428282 | Msa0043950:CDS | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | chr1_1:75428721-75428740 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | chr1_1:75428722-75428741 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | chr1_1:75428861-75428880 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | chr1_1:75428858-75428877 | Msa0043950:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | chr1_1:75428867-75428886 | Msa0043950:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | chr1_1:75428930-75428949 | Msa0043950:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | chr1_1:75428966-75428985 | Msa0043950:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | chr1_1:75428978-75428997 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | chr1_1:75428122-75428141 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | chr1_1:75428161-75428180 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | - | chr1_1:75428348-75428367 | Msa0043950:CDS | 40.0% |
| TATGATCCGTAACGGTATTG+CGG | + | chr1_1:75428374-75428393 | None:intergenic | 40.0% | |
| AGATTGGTGAATCCCACATA+TGG | - | chr1_1:75428547-75428566 | Msa0043950:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | chr1_1:75428548-75428567 | Msa0043950:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | chr1_1:75428549-75428568 | Msa0043950:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | chr1_1:75428578-75428597 | Msa0043950:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | chr1_1:75428720-75428739 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | chr1_1:75428723-75428742 | Msa0043950:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | chr1_1:75428752-75428771 | Msa0043950:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | chr1_1:75428758-75428777 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | chr1_1:75428881-75428900 | Msa0043950:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | chr1_1:75428882-75428901 | Msa0043950:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | chr1_1:75428943-75428962 | Msa0043950:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | chr1_1:75428122-75428141 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | chr1_1:75428161-75428180 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | - | chr1_1:75428348-75428367 | Msa0043950:CDS | 40.0% |
| TATGATCCGTAACGGTATTG+CGG | + | chr1_1:75428374-75428393 | None:intergenic | 40.0% | |
| AGATTGGTGAATCCCACATA+TGG | - | chr1_1:75428547-75428566 | Msa0043950:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | chr1_1:75428548-75428567 | Msa0043950:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | chr1_1:75428549-75428568 | Msa0043950:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | chr1_1:75428578-75428597 | Msa0043950:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | chr1_1:75428720-75428739 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | chr1_1:75428723-75428742 | Msa0043950:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | chr1_1:75428752-75428771 | Msa0043950:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | chr1_1:75428758-75428777 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | chr1_1:75428881-75428900 | Msa0043950:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | chr1_1:75428882-75428901 | Msa0043950:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | chr1_1:75428943-75428962 | Msa0043950:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | + | chr1_1:75428112-75428131 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | chr1_1:75428123-75428142 | Msa0043950:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | chr1_1:75428127-75428146 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | + | chr1_1:75428195-75428214 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | - | chr1_1:75428667-75428686 | Msa0043950:intron | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | + | chr1_1:75428728-75428747 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | chr1_1:75428730-75428749 | Msa0043950:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | chr1_1:75428741-75428760 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | chr1_1:75428741-75428760 | Msa0043950:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | chr1_1:75428751-75428770 | Msa0043950:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | chr1_1:75428875-75428894 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | + | chr1_1:75428112-75428131 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | chr1_1:75428123-75428142 | Msa0043950:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | chr1_1:75428127-75428146 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | + | chr1_1:75428195-75428214 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | - | chr1_1:75428667-75428686 | Msa0043950:intron | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | + | chr1_1:75428728-75428747 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | chr1_1:75428730-75428749 | Msa0043950:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | chr1_1:75428741-75428760 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | chr1_1:75428741-75428760 | Msa0043950:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | chr1_1:75428751-75428770 | Msa0043950:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | chr1_1:75428875-75428894 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | + | chr1_1:75428069-75428088 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | chr1_1:75428081-75428100 | Msa0043950:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | chr1_1:75428082-75428101 | Msa0043950:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | chr1_1:75428140-75428159 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | chr1_1:75428145-75428164 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | + | chr1_1:75428192-75428211 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | chr1_1:75428523-75428542 | Msa0043950:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | chr1_1:75428566-75428585 | Msa0043950:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | chr1_1:75428814-75428833 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | chr1_1:75428819-75428838 | Msa0043950:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | + | chr1_1:75428069-75428088 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | chr1_1:75428081-75428100 | Msa0043950:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | chr1_1:75428082-75428101 | Msa0043950:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | chr1_1:75428140-75428159 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | chr1_1:75428145-75428164 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | + | chr1_1:75428192-75428211 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | chr1_1:75428523-75428542 | Msa0043950:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | chr1_1:75428566-75428585 | Msa0043950:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | chr1_1:75428814-75428833 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | chr1_1:75428819-75428838 | Msa0043950:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | - | chr1_1:75428058-75428077 | Msa0043950:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | chr1_1:75428070-75428089 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | chr1_1:75428074-75428093 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | chr1_1:75428092-75428111 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | + | chr1_1:75428355-75428374 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+CGG | - | chr1_1:75428365-75428384 | Msa0043950:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | chr1_1:75428531-75428550 | Msa0043950:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | chr1_1:75428556-75428575 | Msa0043950:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | chr1_1:75428562-75428581 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | chr1_1:75428563-75428582 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | chr1_1:75428616-75428635 | Msa0043950:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | chr1_1:75428815-75428834 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | chr1_1:75428820-75428839 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | - | chr1_1:75428058-75428077 | Msa0043950:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | chr1_1:75428070-75428089 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | chr1_1:75428074-75428093 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | chr1_1:75428092-75428111 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | + | chr1_1:75428355-75428374 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+CGG | - | chr1_1:75428365-75428384 | Msa0043950:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | chr1_1:75428531-75428550 | Msa0043950:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | chr1_1:75428556-75428575 | Msa0043950:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | chr1_1:75428562-75428581 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | chr1_1:75428563-75428582 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | chr1_1:75428616-75428635 | Msa0043950:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | chr1_1:75428815-75428834 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | chr1_1:75428820-75428839 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | chr1_1:75428093-75428112 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | chr1_1:75428100-75428119 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | - | chr1_1:75428805-75428824 | Msa0043950:intron | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | chr1_1:75428093-75428112 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | chr1_1:75428100-75428119 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | - | chr1_1:75428805-75428824 | Msa0043950:intron | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | chr1_1:75428018-75428037 | Msa0043950:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | chr1_1:75428101-75428120 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | chr1_1:75428018-75428037 | Msa0043950:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | chr1_1:75428101-75428120 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75428000 | 75429011 | 75428000 | ID=Msa0043950;Name=Msa0043950 |
| chr1_1 | mRNA | 75428000 | 75429011 | 75428000 | ID=Msa0043950-mRNA-1;Parent=Msa0043950;Name=Msa0043950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| chr1_1 | exon | 75428816 | 75429011 | 75428816 | ID=Msa0043950-mRNA-1:exon:25440;Parent=Msa0043950-mRNA-1 |
| chr1_1 | exon | 75428000 | 75428499 | 75428000 | ID=Msa0043950-mRNA-1:exon:25439;Parent=Msa0043950-mRNA-1 |
| chr1_1 | CDS | 75428816 | 75429011 | 75428816 | ID=Msa0043950-mRNA-1:cds;Parent=Msa0043950-mRNA-1 |
| chr1_1 | CDS | 75428000 | 75428499 | 75428000 | ID=Msa0043950-mRNA-1:cds;Parent=Msa0043950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
