AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046960 MtrunA17_Chr7g0228481 67.476 412 124 3 2 413 31 432 0.0 560
Msa0046960 MtrunA17_Chr7g0228531 67.233 412 125 3 2 413 31 432 0.0 559
Msa0046960 MtrunA17_Chr7g0233161 90.947 243 22 0 1 243 108 350 4.65e-163 462
Msa0046960 MtrunA17_Chr7g0228401 47.246 472 166 7 2 396 31 496 2.17e-129 382
Msa0046960 MtrunA17_Chr4g0046181 69.421 242 74 0 2 243 31 272 2.49e-106 315
Msa0046960 MtrunA17_Chr7g0233151 86.047 172 24 0 242 413 1 172 7.12e-105 307
Msa0046960 MtrunA17_Chr7g0233061 44.101 356 162 10 35 387 37 358 9.97e-79 247
Msa0046960 MtrunA17_Chr1g0177901 54.502 211 75 5 202 397 4 208 3.33e-65 207
Msa0046960 MtrunA17_Chr4g0046171 72.340 141 39 0 273 413 1 141 3.10e-59 189
Msa0046960 MtrunA17_Chr3g0117511 44.488 254 111 4 186 410 177 429 2.31e-55 189
Msa0046960 MtrunA17_Chr4g0058991 43.874 253 99 7 191 409 208 451 2.82e-55 189
Msa0046960 MtrunA17_Chr5g0429661 60.465 129 44 1 191 312 121 249 8.01e-51 174
Msa0046960 MtrunA17_Chr7g0238631 60.185 108 42 1 187 293 108 215 1.76e-38 145
Msa0046960 MtrunA17_Chr1g0157731 55.963 109 47 1 187 294 86 194 5.22e-38 146
Msa0046960 MtrunA17_Chr3g0139671 56.881 109 46 1 187 294 80 188 6.82e-38 146
Msa0046960 MtrunA17_Chr4g0008551 53.922 102 47 0 190 291 36 137 5.00e-34 129
Msa0046960 MtrunA17_Chr5g0397841 57.292 96 41 0 191 286 109 204 3.54e-33 129
Msa0046960 MtrunA17_Chr3g0133601 48.544 103 53 0 189 291 34 136 1.18e-31 120
Msa0046960 MtrunA17_Chr5g0401731 48.673 113 58 0 179 291 2 114 5.31e-31 121
Msa0046960 MtrunA17_Chr4g0053431 48.544 103 53 0 189 291 2 104 2.47e-29 115
Msa0046960 MtrunA17_Chr5g0437321 51.000 100 49 0 189 288 16 115 7.55e-29 114
Msa0046960 MtrunA17_Chr6g0480581 47.619 105 55 0 192 296 4 108 1.02e-28 112
Msa0046960 MtrunA17_Chr5g0417621 47.788 113 54 1 192 299 134 246 1.22e-27 114
Msa0046960 MtrunA17_Chr4g0022901 44.355 124 65 3 192 311 15 138 1.47e-27 110
Msa0046960 MtrunA17_Chr6g0454921 46.602 103 55 0 186 288 9 111 3.10e-27 107
Msa0046960 MtrunA17_Chr4g0022911 46.535 101 53 1 192 291 15 115 5.50e-27 109
Msa0046960 MtrunA17_Chr7g0240821 31.982 222 127 8 195 394 6 225 5.64e-27 107
Msa0046960 MtrunA17_Chr4g0042501 48.000 100 52 0 192 291 105 204 6.28e-27 111
Msa0046960 MtrunA17_Chr2g0323351 45.946 111 59 1 192 301 14 124 1.47e-26 107
Msa0046960 MtrunA17_Chr4g0022931 47.573 103 52 2 192 292 15 117 1.75e-26 107
Msa0046960 MtrunA17_Chr6g0460671 46.535 101 54 0 191 291 98 198 3.78e-26 108
Msa0046960 MtrunA17_Chr3g0125801 52.000 100 48 0 192 291 16 115 7.78e-26 106
Msa0046960 MtrunA17_Chr4g0039971 48.544 103 51 2 192 292 15 117 1.17e-25 106
Msa0046960 MtrunA17_Chr1g0154031 48.571 105 52 2 192 294 78 182 1.17e-25 107
Msa0046960 MtrunA17_Chr2g0309911 43.564 101 56 1 192 291 13 113 1.83e-25 105
Msa0046960 MtrunA17_Chr3g0099131 47.115 104 54 1 189 291 40 143 2.93e-25 107
Msa0046960 MtrunA17_Chr3g0080861 38.750 160 72 4 141 294 4 143 3.45e-25 107
Msa0046960 MtrunA17_Chr6g0460661 45.000 100 55 0 192 291 16 115 3.45e-25 100
Msa0046960 MtrunA17_Chr5g0410961 45.545 101 54 1 192 291 14 114 3.91e-25 105
Msa0046960 MtrunA17_Chr4g0055981 48.454 97 49 1 192 287 57 153 4.31e-25 102
Msa0046960 MtrunA17_Chr7g0254261 41.259 143 73 2 158 291 48 188 7.40e-25 104
Msa0046960 MtrunA17_Chr2g0281071 46.535 101 53 1 192 291 15 115 7.77e-25 104
Msa0046960 MtrunA17_Chr8g0354661 50.476 105 50 2 192 294 39 143 8.19e-25 106
Msa0046960 MtrunA17_Chr3g0115821 45.545 101 54 1 192 291 14 114 1.53e-24 103
Msa0046960 MtrunA17_Chr4g0048511 45.545 101 54 1 192 291 15 115 2.41e-24 103
Msa0046960 MtrunA17_Chr8g0349261 50.000 106 46 3 192 292 15 118 2.47e-24 102
Msa0046960 MtrunA17_Chr2g0323411 45.545 101 54 1 192 291 14 114 3.41e-24 102
Msa0046960 MtrunA17_Chr8g0385321 43.103 116 60 3 182 295 8 119 4.29e-24 101
Msa0046960 MtrunA17_Chr8g0342541 42.157 102 56 2 192 291 14 114 4.45e-24 102
Msa0046960 MtrunA17_Chr5g0395281 44.660 103 55 2 192 292 14 116 7.37e-24 100
Msa0046960 MtrunA17_Chr4g0013361 38.065 155 81 5 192 333 12 164 9.31e-24 100
Msa0046960 MtrunA17_Chr4g0037141 46.364 110 55 2 192 300 14 120 1.17e-23 99.8
Msa0046960 MtrunA17_Chr7g0261281 42.735 117 61 3 192 304 14 128 1.35e-23 99.8
Msa0046960 MtrunA17_Chr8g0342521 43.137 102 55 2 192 291 14 114 1.87e-23 100
Msa0046960 MtrunA17_Chr1g0193801 43.396 106 58 2 192 295 14 119 2.09e-23 100
Msa0046960 MtrunA17_Chr1g0193371 45.192 104 53 3 192 292 14 116 2.29e-23 100
Msa0046960 MtrunA17_Chr3g0117091 43.137 102 55 2 192 291 14 114 2.44e-23 100
Msa0046960 MtrunA17_Chr8g0334881 48.544 103 51 2 192 292 12 114 2.81e-23 99.4
Msa0046960 MtrunA17_Chr3g0104491 59.722 72 23 1 242 307 17 88 2.91e-23 98.6
Msa0046960 MtrunA17_Chr3g0088461 45.763 118 56 3 183 292 9 126 3.12e-23 99.8
Msa0046960 MtrunA17_Chr4g0042671 44.660 103 55 2 192 292 14 116 3.27e-23 100
Msa0046960 MtrunA17_Chr2g0327821 47.273 110 56 2 192 300 8 116 3.34e-23 97.4
Msa0046960 MtrunA17_Chr7g0270891 43.396 106 58 2 192 295 14 119 3.95e-23 99.8
Msa0046960 MtrunA17_Chr4g0030881 44.737 114 55 2 192 297 9 122 3.95e-23 97.8
Msa0046960 MtrunA17_Chr1g0211161 43.137 102 55 2 192 291 15 115 4.04e-23 97.1
Msa0046960 MtrunA17_Chr2g0330041 42.157 102 56 2 192 291 14 114 4.31e-23 100
Msa0046960 MtrunA17_Chr3g0103281 42.593 108 60 2 189 294 11 118 4.37e-23 99.0
Msa0046960 MtrunA17_Chr7g0274581 42.424 99 52 2 192 287 14 110 5.67e-23 95.9
Msa0046960 MtrunA17_Chr4g0057031 47.115 104 51 3 192 292 14 116 5.76e-23 97.8
Msa0046960 MtrunA17_Chr7g0271241 46.392 97 49 2 192 286 14 109 6.15e-23 99.8
Msa0046960 MtrunA17_Chr1g0203411 46.392 97 51 1 192 287 14 110 7.83e-23 97.8
Msa0046960 MtrunA17_Chr4g0058631 41.584 101 58 1 192 291 14 114 9.92e-23 98.6
Msa0046960 MtrunA17_Chr4g0032401 44.660 103 55 2 192 292 19 121 1.04e-22 98.2
Msa0046960 MtrunA17_Chr5g0441131 44.118 102 55 2 192 291 11 112 1.25e-22 94.4
Msa0046960 MtrunA17_Chr4g0070641 45.361 97 52 1 192 287 14 110 1.29e-22 94.0
Msa0046960 MtrunA17_Chr2g0328771 44.660 103 55 2 192 292 22 124 1.37e-22 97.4
Msa0046960 MtrunA17_Chr1g0186061 45.455 110 52 3 192 299 22 125 1.42e-22 96.3
Msa0046960 MtrunA17_Chr4g0070611 45.361 97 52 1 192 287 14 110 1.42e-22 97.4
Msa0046960 MtrunA17_Chr6g0452271 42.574 101 57 1 192 291 14 114 1.51e-22 97.8
Msa0046960 MtrunA17_Chr5g0397231 45.361 97 52 1 192 287 14 110 1.62e-22 97.8
Msa0046960 MtrunA17_Chr5g0441141 43.689 103 56 2 192 292 14 116 1.63e-22 96.3
Msa0046960 MtrunA17_Chr5g0440761 43.689 103 56 2 192 292 14 116 1.68e-22 96.3
Msa0046960 MtrunA17_Chr5g0434571 47.115 104 51 3 192 292 50 152 1.71e-22 97.8
Msa0046960 MtrunA17_Chr5g0440781 43.689 103 56 2 192 292 14 116 1.80e-22 94.0
Msa0046960 MtrunA17_Chr8g0387421 44.444 108 56 2 184 287 3 110 1.82e-22 97.1
Msa0046960 MtrunA17_Chr5g0417821 44.660 103 55 2 192 292 9 111 1.93e-22 96.7
Msa0046960 MtrunA17_Chr8g0346561 46.465 99 48 2 192 287 14 110 2.02e-22 96.7
Msa0046960 MtrunA17_Chr4g0044421 43.689 103 53 2 192 291 14 114 2.21e-22 94.0
Msa0046960 MtrunA17_Chr3g0131121 44.340 106 57 2 192 295 14 119 2.31e-22 96.7
Msa0046960 MtrunA17_Chr5g0435101 43.564 101 56 1 192 291 13 113 2.84e-22 94.4
Msa0046960 MtrunA17_Chr7g0220341 34.270 178 91 6 192 361 27 186 2.97e-22 95.9
Msa0046960 MtrunA17_Chr1g0180391 36.842 171 93 5 192 351 21 187 2.99e-22 94.7
Msa0046960 MtrunA17_Chr7g0217741 44.660 103 55 2 192 292 14 116 3.61e-22 96.3
Msa0046960 MtrunA17_Chr8g0343831 43.810 105 55 3 186 287 3 106 3.67e-22 95.1
Msa0046960 MtrunA17_Chr7g0228231 45.098 102 53 2 186 285 10 110 4.57e-22 93.6
Msa0046960 MtrunA17_Chr8g0342481 40.777 103 57 3 192 291 14 115 5.21e-22 97.1
Msa0046960 MtrunA17_Chr7g0275911 44.037 109 57 2 192 299 14 119 5.29e-22 94.7
Msa0046960 MtrunA17_Chr3g0110351 46.154 104 52 3 192 292 14 116 5.49e-22 95.5
Msa0046960 MtrunA17_Chr1g0187761 43.810 105 55 3 192 293 14 117 6.75e-22 94.4
Msa0046960 MtrunA17_Chr1g0192411 44.554 101 55 1 192 291 14 114 7.24e-22 96.7
Msa0046960 MtrunA17_Chr7g0228991 43.299 97 54 1 192 287 31 127 9.02e-22 94.4
Msa0046960 MtrunA17_Chr1g0168661 47.917 96 47 2 192 285 23 117 1.03e-21 94.0
Msa0046960 MtrunA17_Chr7g0228891 36.601 153 77 5 192 341 14 149 1.43e-21 93.6
Msa0046960 MtrunA17_Chr4g0022881 36.719 128 78 2 192 318 14 139 1.74e-21 92.4
Msa0046960 MtrunA17_Chr5g0434931 41.584 101 58 1 192 291 37 137 1.76e-21 93.6
Msa0046960 MtrunA17_Chr2g0311221 45.631 103 54 2 187 287 10 112 1.84e-21 94.4
Msa0046960 MtrunA17_Chr1g0167691 43.689 103 56 2 192 292 14 116 2.02e-21 92.8
Msa0046960 MtrunA17_Chr1g0167661 42.991 107 58 2 192 295 14 120 2.72e-21 92.4
Msa0046960 MtrunA17_Chr2g0322521 39.073 151 70 4 192 339 31 162 3.14e-21 94.7
Msa0046960 MtrunA17_Chr6g0453471 43.689 103 56 2 192 292 14 116 3.62e-21 94.0
Msa0046960 MtrunA17_Chr4g0068061 41.748 103 55 2 192 291 14 114 4.20e-21 93.6
Msa0046960 MtrunA17_Chr7g0217221 40.517 116 67 2 192 306 14 128 8.16e-21 91.7
Msa0046960 MtrunA17_Chr6g0450101 42.574 101 57 1 186 285 10 110 8.40e-21 90.1
Msa0046960 MtrunA17_Chr4g0022891 42.202 109 59 3 192 298 14 120 9.63e-21 90.9
Msa0046960 MtrunA17_Chr4g0060721 39.316 117 66 3 192 306 15 128 1.36e-20 92.0
Msa0046960 MtrunA17_Chr5g0434841 35.065 154 93 3 192 343 22 170 2.56e-20 90.9
Msa0046960 MtrunA17_Chr1g0203441 37.719 114 70 1 183 295 6 119 2.62e-20 90.1
Msa0046960 MtrunA17_Chr7g0247131 53.165 79 34 2 217 292 4 82 3.15e-20 89.7
Msa0046960 MtrunA17_Chr1g0209661 39.200 125 71 4 186 307 22 144 3.49e-20 90.5
Msa0046960 MtrunA17_Chr6g0470971 38.889 108 65 1 192 298 16 123 3.60e-20 90.1
Msa0046960 MtrunA17_Chr3g0121241 40.000 110 62 2 192 300 44 150 3.93e-20 90.1
Msa0046960 MtrunA17_Chr8g0362231 39.394 132 71 3 170 301 2 124 5.96e-20 91.3
Msa0046960 MtrunA17_Chr5g0434911 38.679 106 64 1 192 296 23 128 8.17e-20 89.0
Msa0046960 MtrunA17_Chr5g0434831 33.766 154 95 3 192 343 9 157 9.44e-20 86.7
Msa0046960 MtrunA17_Chr6g0453211 42.424 99 52 2 192 287 14 110 1.06e-19 89.4
Msa0046960 MtrunA17_Chr3g0104501 69.811 53 16 0 191 243 132 184 1.69e-19 86.3
Msa0046960 MtrunA17_Chr8g0360111 41.237 97 56 1 192 287 27 123 1.90e-19 87.4
Msa0046960 MtrunA17_Chr5g0421201 35.829 187 88 6 241 410 9 180 1.97e-19 85.5
Msa0046960 MtrunA17_Chr7g0254411 42.308 104 58 2 192 293 14 117 2.66e-19 88.6
Msa0046960 MtrunA17_Chr1g0194301 43.750 96 51 2 192 285 35 129 4.29e-19 86.7
Msa0046960 MtrunA17_Chr3g0092401 40.594 101 59 1 192 291 15 115 5.31e-19 87.0
Msa0046960 MtrunA17_Chr5g0416341 37.500 120 74 1 172 291 7 125 1.02e-18 87.8
Msa0046960 MtrunA17_Chr1g0194951 40.404 99 54 2 192 287 14 110 5.32e-18 85.1
Msa0046960 MtrunA17_Chr5g0400821 40.909 110 61 3 192 297 14 123 6.42e-18 84.0
Msa0046960 MtrunA17_Chr1g0152011 37.607 117 69 3 192 304 14 130 9.83e-18 84.0
Msa0046960 MtrunA17_Chr1g0151941 37.302 126 66 4 192 314 14 129 1.38e-17 82.0
Msa0046960 MtrunA17_Chr3g0099141 36.364 110 69 1 162 270 12 121 1.46e-17 79.0
Msa0046960 MtrunA17_Chr3g0135311 40.367 109 62 3 192 297 14 122 1.53e-17 83.2
Msa0046960 MtrunA17_Chr1g0194291 36.036 111 70 1 176 285 7 117 5.37e-17 80.5
Msa0046960 MtrunA17_Chr4g0054391 41.237 97 55 2 192 286 14 110 5.43e-17 80.9
Msa0046960 MtrunA17_Chr2g0327351 39.796 98 57 2 192 287 14 111 1.00e-16 80.5
Msa0046960 MtrunA17_Chr4g0028311 38.679 106 62 3 192 294 14 119 1.24e-16 80.5
Msa0046960 MtrunA17_Chr4g0072751 41.837 98 55 2 192 287 14 111 1.42e-16 80.5
Msa0046960 MtrunA17_Chr2g0293911 42.708 96 52 2 192 285 26 120 2.29e-16 79.7
Msa0046960 MtrunA17_Chr5g0434901 48.485 66 34 0 225 290 9 74 3.92e-16 74.3
Msa0046960 MtrunA17_Chr4g0068921 37.815 119 68 3 179 292 10 127 7.20e-16 75.9
Msa0046960 MtrunA17_Chr7g0238651 31.429 140 86 3 194 325 9 146 1.18e-15 77.8
Msa0046960 MtrunA17_Chr6g0487491 36.607 112 57 4 192 291 14 123 1.37e-15 76.3
Msa0046960 MtrunA17_Chr7g0269831 44.444 99 50 2 192 287 14 110 1.46e-15 77.4
Msa0046960 MtrunA17_Chr7g0264641 36.190 105 65 2 189 291 11 115 1.57e-15 76.3
Msa0046960 MtrunA17_Chr6g0483051 34.337 166 96 4 122 285 58 212 2.89e-15 77.8
Msa0046960 MtrunA17_Chr4g0042611 41.333 75 43 1 192 265 14 88 3.92e-14 67.8
Msa0046960 MtrunA17_Chr7g0229101 41.667 72 40 1 221 290 2 73 8.10e-14 70.1
Msa0046960 MtrunA17_Chr2g0323321 34.783 92 59 1 192 282 13 104 1.03e-13 67.4
Msa0046960 MtrunA17_Chr3g0093811 39.726 73 42 1 221 291 12 84 3.38e-13 69.3
Msa0046960 MtrunA17_Chr7g0229131 34.615 104 56 2 225 325 8 102 3.89e-13 67.4
Msa0046960 MtrunA17_Chr8g0342471 41.772 79 42 3 192 267 14 91 7.01e-13 65.9
Msa0046960 MtrunA17_Chr8g0342531 37.975 79 46 2 192 268 14 91 7.44e-13 66.2
Msa0046960 MtrunA17_Chr8g0342511 40.000 75 42 2 192 264 14 87 1.55e-12 63.5
Msa0046960 MtrunA17_Chr7g0274481 37.647 85 52 1 193 277 8 91 1.63e-12 69.7
Msa0046960 MtrunA17_Chr8g0342461 41.026 78 42 3 192 266 14 90 1.81e-12 64.7
Msa0046960 MtrunA17_Chr5g0425591 39.506 81 47 2 192 270 11 91 1.87e-12 63.2
Msa0046960 MtrunA17_Chr5g0395221 40.000 75 44 1 192 265 14 88 2.28e-12 62.8
Msa0046960 MtrunA17_Chr5g0397691 37.975 79 49 0 192 270 7 85 6.83e-12 67.4
Msa0046960 MtrunA17_Chr2g0294811 35.065 77 45 2 192 265 14 88 3.26e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046960 AT4G18770.1 68.852 122 38 0 191 312 216 337 5.67e-55 188
Msa0046960 AT3G27785.1 55.215 163 69 3 149 308 143 304 6.96e-52 180
Msa0046960 AT5G58850.1 47.090 189 93 1 114 302 34 215 2.05e-48 171
Msa0046960 AT5G11050.1 65.000 120 40 1 182 299 93 212 7.76e-48 169
Msa0046960 AT5G40360.1 62.185 119 44 1 185 302 150 268 4.26e-47 165
Msa0046960 AT5G11510.3 55.046 109 48 1 187 294 76 184 6.04e-38 146
Msa0046960 AT5G11510.1 55.046 109 48 1 187 294 76 184 6.04e-38 146
Msa0046960 AT5G11510.4 55.046 109 48 1 187 294 76 184 6.04e-38 146
Msa0046960 AT5G11510.2 55.046 109 48 1 187 294 76 184 6.92e-38 146
Msa0046960 AT5G11510.5 55.046 109 48 1 187 294 76 184 6.99e-38 146
Msa0046960 AT3G09370.2 58.095 105 44 0 187 291 130 234 3.45e-37 142
Msa0046960 AT3G09370.1 58.095 105 44 0 187 291 125 229 3.51e-37 142
Msa0046960 AT5G02320.1 57.944 107 44 1 187 292 122 228 3.74e-37 142
Msa0046960 AT5G02320.2 57.944 107 44 1 187 292 122 228 3.74e-37 142
Msa0046960 AT3G09370.3 58.095 105 44 0 187 291 138 242 4.16e-37 142
Msa0046960 AT5G02320.3 57.143 105 45 0 187 291 62 166 5.06e-37 141
Msa0046960 AT2G25230.1 56.190 105 46 0 192 296 26 130 3.37e-36 133
Msa0046960 AT4G32730.5 54.128 109 49 1 187 294 82 190 4.22e-36 141
Msa0046960 AT4G32730.4 54.128 109 49 1 187 294 82 190 4.22e-36 141
Msa0046960 AT4G32730.3 54.128 109 49 1 187 294 82 190 4.22e-36 141
Msa0046960 AT4G32730.2 54.128 109 49 1 187 294 82 190 4.22e-36 141
Msa0046960 AT4G32730.1 54.128 109 49 1 187 294 82 190 5.73e-36 140
Msa0046960 AT5G40430.1 40.761 184 100 4 148 325 8 188 1.43e-35 132
Msa0046960 AT3G09230.1 52.427 103 49 0 189 291 52 154 6.98e-31 122
Msa0046960 AT4G00540.2 49.624 133 54 4 169 292 79 207 1.34e-30 122
Msa0046960 AT3G55730.1 47.788 113 59 0 189 301 53 165 3.18e-30 120
Msa0046960 AT4G33450.1 46.825 126 63 1 178 303 5 126 3.52e-30 117
Msa0046960 AT4G00540.1 49.624 133 54 4 169 292 77 205 3.99e-30 121
Msa0046960 AT1G17950.1 43.382 136 72 2 192 324 5 138 3.42e-29 114
Msa0046960 AT1G69560.1 44.538 119 66 0 192 310 107 225 2.13e-28 114
Msa0046960 AT1G69560.2 44.538 119 66 0 192 310 123 241 2.16e-28 114
Msa0046960 AT4G37260.1 49.057 106 54 0 186 291 7 112 1.44e-27 112
Msa0046960 AT1G26780.1 50.000 100 50 0 192 291 98 197 2.47e-27 110
Msa0046960 AT5G17800.1 52.000 100 48 0 192 291 93 192 2.80e-27 111
Msa0046960 AT1G26780.2 50.000 100 50 0 192 291 98 197 3.08e-27 111
Msa0046960 AT2G26960.1 50.000 102 50 1 192 292 22 123 4.72e-27 112
Msa0046960 AT2G23290.1 49.057 106 54 0 186 291 7 112 5.08e-27 110
Msa0046960 AT2G26950.1 45.872 109 50 2 192 295 18 122 6.45e-27 111
Msa0046960 AT3G11440.2 48.571 105 52 2 192 294 43 147 9.49e-27 112
Msa0046960 AT5G67300.1 43.750 112 63 0 189 300 3 114 1.38e-26 108
Msa0046960 AT3G11440.3 48.571 105 52 2 192 294 43 147 2.53e-26 111
Msa0046960 AT3G11440.4 48.571 105 52 2 192 294 43 147 2.53e-26 111
Msa0046960 AT3G11440.1 48.571 105 52 2 192 294 43 147 2.53e-26 111
Msa0046960 AT5G14750.1 41.481 135 74 3 192 324 18 149 4.21e-26 104
Msa0046960 AT2G39880.1 43.519 108 61 0 189 296 47 154 5.82e-26 108
Msa0046960 AT3G50060.1 43.689 103 58 0 189 291 3 105 6.31e-26 107
Msa0046960 AT3G28470.1 47.000 100 52 1 189 287 11 110 8.64e-26 107
Msa0046960 AT1G57560.1 34.500 200 108 7 192 379 14 202 9.42e-26 106
Msa0046960 AT4G26930.1 47.059 102 53 1 192 292 21 122 1.26e-25 107
Msa0046960 AT1G74430.1 44.340 106 58 1 192 296 14 119 1.57e-25 105
Msa0046960 AT5G55020.1 48.039 102 52 1 192 292 28 129 1.78e-25 108
Msa0046960 AT3G29020.1 42.609 115 61 1 192 306 65 174 2.49e-25 103
Msa0046960 AT3G29020.2 42.609 115 61 1 192 306 67 176 3.20e-25 105
Msa0046960 AT5G06100.1 46.667 105 54 2 192 294 34 138 3.96e-25 107
Msa0046960 AT2G32460.1 48.544 103 48 2 192 291 20 120 4.50e-25 107
Msa0046960 AT2G32460.2 48.544 103 48 2 192 291 8 108 4.59e-25 107
Msa0046960 AT5G40330.1 47.959 98 48 2 192 287 14 110 5.87e-25 102
Msa0046960 AT4G28110.1 46.535 101 53 1 192 291 14 114 8.46e-25 103
Msa0046960 AT5G06100.5 46.667 105 54 2 192 294 34 138 9.02e-25 106
Msa0046960 AT5G06100.2 46.667 105 54 2 192 294 34 138 9.02e-25 106
Msa0046960 AT5G06100.3 46.667 105 54 2 192 294 34 138 9.02e-25 106
Msa0046960 AT5G06100.4 46.667 105 54 2 192 294 34 138 9.02e-25 106
Msa0046960 AT3G27920.1 47.959 98 48 2 192 287 16 112 1.24e-24 101
Msa0046960 AT1G73410.2 50.000 100 50 0 192 291 6 105 1.55e-24 100
Msa0046960 AT1G73410.1 50.000 100 50 0 192 291 6 105 1.81e-24 101
Msa0046960 AT4G21440.1 47.525 101 52 1 192 291 14 114 2.24e-24 103
Msa0046960 AT4G38620.1 37.908 153 91 2 192 343 14 163 2.76e-24 102
Msa0046960 AT3G61250.1 50.000 104 48 3 192 292 14 116 2.84e-24 102
Msa0046960 AT4G05100.1 46.535 101 53 1 192 291 15 115 3.37e-24 102
Msa0046960 AT3G12720.1 44.118 102 54 2 192 291 24 124 4.84e-24 101
Msa0046960 AT5G16770.4 46.535 101 53 1 192 291 14 114 5.87e-24 102
Msa0046960 AT5G16770.3 46.535 101 53 1 192 291 14 114 5.87e-24 102
Msa0046960 AT5G59780.3 46.789 109 56 2 192 299 10 117 7.27e-24 99.8
Msa0046960 AT5G16770.1 46.535 101 53 1 192 291 14 114 7.35e-24 102
Msa0046960 AT5G16770.2 46.535 101 53 1 192 291 14 114 7.35e-24 102
Msa0046960 AT3G46130.1 47.706 109 55 2 192 299 11 118 1.21e-23 99.8
Msa0046960 AT1G22640.1 48.077 104 50 3 192 292 14 116 1.23e-23 99.8
Msa0046960 AT1G09540.1 35.294 187 110 6 192 375 14 192 1.26e-23 101
Msa0046960 AT5G26660.1 36.478 159 93 5 192 345 14 169 1.35e-23 101
Msa0046960 AT3G13890.2 40.594 101 59 1 192 291 14 114 2.22e-23 100
Msa0046960 AT5G10280.1 44.660 103 55 2 192 292 14 116 2.50e-23 100
Msa0046960 AT3G13890.1 38.182 110 58 1 192 291 14 123 2.51e-23 100
Msa0046960 AT5G12870.1 47.573 103 52 2 192 292 20 122 2.65e-23 99.4
Msa0046960 AT1G18570.1 47.573 103 52 2 192 292 15 117 3.05e-23 100
Msa0046960 AT5G35550.1 46.078 102 52 2 192 291 16 116 3.60e-23 98.2
Msa0046960 AT4G09460.1 32.039 206 110 6 192 396 14 190 4.05e-23 97.4
Msa0046960 AT1G57560.2 43.925 107 56 3 192 295 14 119 4.42e-23 98.6
Msa0046960 AT4G01680.1 39.286 140 79 3 192 328 14 150 4.44e-23 99.8
Msa0046960 AT3G02940.2 45.545 101 54 1 192 291 14 114 4.74e-23 99.0
Msa0046960 AT4G01680.3 39.286 140 79 3 192 328 14 150 6.31e-23 97.1
Msa0046960 AT2G47190.1 36.774 155 88 4 175 321 5 157 6.51e-23 97.8
Msa0046960 AT5G54230.1 47.115 104 51 3 192 292 14 116 6.84e-23 99.0
Msa0046960 AT3G02940.1 45.545 101 54 1 192 291 14 114 7.62e-23 98.6
Msa0046960 AT3G02940.3 45.545 101 54 1 192 291 14 114 7.62e-23 98.6
Msa0046960 AT3G30210.1 36.810 163 87 3 192 344 29 185 8.72e-23 97.8
Msa0046960 AT4G12350.1 45.192 104 53 3 192 292 14 116 9.54e-23 97.8
Msa0046960 AT5G65230.1 42.574 101 57 1 192 291 14 114 1.12e-22 98.2
Msa0046960 AT5G52600.1 42.735 117 63 3 192 305 14 129 1.20e-22 95.5
Msa0046960 AT3G08500.1 45.794 107 56 2 188 292 28 134 1.76e-22 98.2
Msa0046960 AT3G60460.1 46.602 103 53 2 192 292 13 115 1.79e-22 97.4
Msa0046960 AT4G01680.2 36.842 152 78 3 192 328 14 162 1.81e-22 98.2
Msa0046960 AT3G23250.1 42.241 116 61 3 192 303 14 127 2.32e-22 96.7
Msa0046960 AT1G74080.1 43.396 106 59 1 192 296 14 119 2.50e-22 97.4
Msa0046960 AT2G16720.1 46.296 108 52 3 192 295 14 119 2.53e-22 96.3
Msa0046960 AT1G34670.1 42.574 101 57 1 192 291 14 114 3.46e-22 97.4
Msa0046960 AT3G13540.1 41.748 103 55 2 192 291 25 125 3.52e-22 95.1
Msa0046960 AT1G66230.1 46.154 104 52 3 192 292 14 116 3.70e-22 95.9
Msa0046960 AT1G35515.1 42.727 110 59 2 192 300 14 120 4.78e-22 94.0
Msa0046960 AT4G22680.1 46.154 104 52 3 192 292 14 116 5.99e-22 95.1
Msa0046960 AT1G06180.1 44.762 105 54 3 192 293 14 117 6.97e-22 94.4
Msa0046960 AT2G31180.1 38.793 116 70 1 192 306 14 129 7.32e-22 94.4
Msa0046960 AT3G24310.1 41.176 119 67 2 192 308 20 137 1.21e-21 94.4
Msa0046960 AT5G56110.1 42.593 108 60 2 189 294 11 118 1.46e-21 95.1
Msa0046960 AT1G56160.1 43.636 110 57 4 187 292 10 118 1.69e-21 94.4
Msa0046960 AT3G48920.1 42.609 115 64 2 178 291 7 120 2.12e-21 93.6
Msa0046960 AT4G13480.1 47.917 96 47 2 192 285 8 102 3.09e-21 92.8
Msa0046960 AT5G07690.1 44.118 102 56 1 192 292 14 115 3.55e-21 94.4
Msa0046960 AT1G63910.1 44.330 97 53 1 192 287 14 110 3.69e-21 94.7
Msa0046960 AT4G17785.2 40.594 101 59 1 192 291 15 115 3.98e-21 94.4
Msa0046960 AT5G62470.1 42.157 102 58 1 192 292 14 115 4.15e-21 94.4
Msa0046960 AT1G66370.1 40.517 116 65 2 192 306 10 122 4.28e-21 92.0
Msa0046960 AT3G53200.1 41.525 118 65 3 186 301 5 120 4.33e-21 92.0
Msa0046960 AT4G17785.1 40.594 101 59 1 192 291 15 115 4.35e-21 94.4
Msa0046960 AT4G34990.1 44.660 103 55 2 192 292 14 116 4.51e-21 92.8
Msa0046960 AT3G01140.2 43.689 103 56 2 192 292 14 116 5.25e-21 94.0
Msa0046960 AT1G18710.1 39.623 106 62 2 192 295 14 119 6.01e-21 92.4
Msa0046960 AT5G61420.2 45.631 103 54 2 192 292 14 116 6.69e-21 94.0
Msa0046960 AT3G01140.1 43.689 103 56 2 192 292 57 159 6.72e-21 94.0
Msa0046960 AT5G26660.2 35.374 147 79 4 202 345 5 138 6.72e-21 93.2
Msa0046960 AT5G14340.1 42.342 111 58 3 192 300 26 132 7.77e-21 92.0
Msa0046960 AT5G07700.1 44.660 103 55 2 192 292 14 116 8.33e-21 93.2
Msa0046960 AT5G07700.2 44.660 103 55 2 192 292 14 116 8.33e-21 93.2
Msa0046960 AT5G39700.1 41.000 100 59 0 193 292 57 156 9.70e-21 89.7
Msa0046960 AT5G15310.2 42.718 103 57 2 192 292 14 116 1.18e-20 92.4
Msa0046960 AT5G15310.1 42.718 103 57 2 192 292 14 116 1.19e-20 92.4
Msa0046960 AT5G15310.4 42.718 103 57 2 192 292 14 116 1.73e-20 90.5
Msa0046960 AT3G01530.1 39.024 123 71 3 172 291 6 127 2.13e-20 89.4
Msa0046960 AT5G16600.1 45.192 104 53 3 192 292 14 116 3.24e-20 91.3
Msa0046960 AT1G79180.1 43.810 105 53 3 192 292 16 118 3.53e-20 90.5
Msa0046960 AT5G60890.1 43.396 106 58 2 192 295 14 119 4.75e-20 90.1
Msa0046960 AT1G16490.1 40.741 108 58 3 192 295 16 121 6.85e-20 89.4
Msa0046960 AT5G40350.1 44.792 96 50 2 192 285 19 113 7.86e-20 87.8
Msa0046960 AT1G74650.1 43.689 103 56 2 192 292 14 116 1.11e-19 89.7
Msa0046960 AT3G47600.1 41.748 103 58 2 192 292 14 116 1.35e-19 89.7
Msa0046960 AT5G14750.3 40.000 100 58 1 225 324 18 115 1.43e-19 85.9
Msa0046960 AT3G27810.1 44.792 96 50 2 192 285 22 116 1.43e-19 87.4
Msa0046960 AT5G62470.2 42.268 97 55 1 192 287 14 110 1.48e-19 89.7
Msa0046960 AT1G25340.1 45.918 98 50 2 190 285 18 114 1.75e-19 88.6
Msa0046960 AT3G62610.1 44.898 98 51 2 192 287 14 110 2.92e-19 89.0
Msa0046960 AT3G28910.1 42.453 106 55 3 192 293 14 117 3.07e-19 88.6
Msa0046960 AT1G08810.1 39.669 121 67 3 192 308 14 132 3.45e-19 87.4
Msa0046960 AT4G25560.1 42.268 97 55 1 192 287 12 108 3.48e-19 87.4
Msa0046960 AT3G12820.1 41.593 113 62 3 187 296 10 121 6.06e-19 85.9
Msa0046960 AT1G25340.2 43.750 96 50 1 190 285 18 109 6.52e-19 86.7
Msa0046960 AT2G47460.1 42.157 102 56 2 192 291 14 114 9.61e-19 87.8
Msa0046960 AT5G35550.2 48.684 76 37 1 218 291 44 119 1.24e-18 85.5
Msa0046960 AT5G62320.1 44.144 111 51 4 192 292 15 124 1.34e-18 85.1
Msa0046960 AT1G25340.3 43.750 96 50 1 190 285 18 109 1.63e-18 85.9
Msa0046960 AT5G49330.1 40.404 99 54 2 192 287 14 110 1.72e-18 86.7
Msa0046960 AT1G68320.1 42.708 96 52 2 192 285 21 115 1.97e-18 85.5
Msa0046960 AT4G37780.1 37.398 123 71 4 192 311 14 133 2.28e-18 85.5
Msa0046960 AT5G57620.1 40.367 109 62 3 192 297 14 122 2.32e-18 85.9
Msa0046960 AT1G14350.2 34.711 121 76 2 195 312 28 148 8.63e-18 85.5
Msa0046960 AT1G14350.1 34.711 121 76 2 195 312 28 148 8.63e-18 85.5
Msa0046960 AT5G23000.1 39.806 103 58 2 192 291 14 115 1.24e-17 84.0
Msa0046960 AT3G49690.1 40.909 110 61 3 192 297 14 123 1.30e-17 83.6
Msa0046960 AT5G65790.1 40.708 113 63 3 189 297 11 123 1.49e-17 84.0
Msa0046960 AT1G66380.1 42.268 97 55 1 192 287 10 106 2.40e-17 78.6
Msa0046960 AT5G52260.1 44.000 100 53 2 190 287 12 110 4.20e-17 81.3
Msa0046960 AT3G18100.1 40.000 100 58 2 187 285 490 588 4.57e-17 84.0
Msa0046960 AT3G18100.1 35.200 125 81 0 161 285 515 639 6.51e-16 80.5
Msa0046960 AT3G18100.3 40.000 100 58 2 187 285 442 540 5.61e-17 83.6
Msa0046960 AT3G18100.3 35.200 125 81 0 161 285 467 591 7.49e-16 80.1
Msa0046960 AT1G56650.1 41.237 97 56 1 192 287 10 106 5.66e-17 80.5
Msa0046960 AT3G18100.4 40.000 100 58 2 187 285 329 427 7.81e-17 83.2
Msa0046960 AT3G18100.4 35.200 125 81 0 161 285 354 478 1.04e-15 79.7
Msa0046960 AT3G18100.2 40.000 100 58 2 187 285 277 375 8.75e-17 82.8
Msa0046960 AT3G18100.2 35.200 125 81 0 161 285 302 426 1.12e-15 79.3
Msa0046960 AT3G12820.2 48.611 72 37 0 225 296 2 73 8.98e-17 78.6
Msa0046960 AT1G48000.1 40.000 95 56 1 192 285 34 128 9.65e-17 79.7
Msa0046960 AT1G79180.2 35.294 136 53 4 192 292 16 151 9.76e-17 81.3
Msa0046960 AT1G66390.1 42.268 97 55 1 192 287 10 106 1.74e-16 79.0
Msa0046960 AT3G53200.2 48.052 77 39 1 225 301 12 87 3.98e-16 77.0
Msa0046960 AT2G02820.2 34.021 97 64 0 195 291 33 129 6.50e-16 79.7
Msa0046960 AT5G49620.1 31.034 174 109 4 168 331 1 173 6.83e-16 78.6
Msa0046960 AT5G59780.2 48.000 75 38 1 225 299 23 96 7.16e-16 76.6
Msa0046960 AT2G02820.1 36.264 91 58 0 195 285 33 123 1.01e-15 79.3
Msa0046960 AT3G46130.4 48.000 75 38 1 225 299 23 96 1.73e-15 75.9
Msa0046960 AT2G02820.3 36.264 91 58 0 195 285 33 123 1.99e-15 77.4
Msa0046960 AT3G46130.3 48.000 75 38 1 225 299 13 86 2.01e-15 75.5
Msa0046960 AT3G06490.1 38.462 117 68 3 170 285 2 115 2.63e-15 77.0
Msa0046960 AT3G47600.2 47.826 69 35 1 225 292 42 110 3.14e-15 76.6
Msa0046960 AT2G37630.1 35.338 133 81 2 194 321 6 138 4.48e-15 76.6
Msa0046960 AT5G40350.2 49.180 61 31 0 225 285 8 68 8.18e-15 72.4
Msa0046960 AT3G27810.2 49.180 61 31 0 225 285 7 67 9.42e-15 72.4
Msa0046960 AT5G14750.4 37.079 89 54 1 236 324 2 88 1.65e-14 70.9
Msa0046960 AT5G14750.2 37.079 89 54 1 236 324 2 88 1.65e-14 70.9
Msa0046960 AT2G36890.1 38.532 109 64 3 189 294 11 119 2.58e-14 73.6
Msa0046960 AT2G36890.2 38.532 109 64 3 189 294 52 160 4.60e-14 73.2
Msa0046960 AT1G22640.3 53.448 58 26 1 236 292 2 59 6.74e-14 70.5
Msa0046960 AT3G23250.2 44.928 69 37 1 236 303 2 70 7.34e-13 68.2
Msa0046960 AT5G49620.2 28.723 188 109 5 168 331 1 187 1.08e-12 68.9
Msa0046960 AT1G09770.1 37.647 85 52 1 193 277 8 91 3.18e-12 68.9
Msa0046960 AT1G71030.2 37.500 64 40 0 228 291 5 68 5.96e-12 64.7
Msa0046960 AT1G71030.1 37.500 64 40 0 228 291 19 82 7.10e-12 64.7
Msa0046960 AT1G66380.3 47.619 63 33 0 225 287 11 73 1.11e-11 61.6

Find 115 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGAGCTTTCAAAATT+TGG 0.062051 1_1:-79416997 None:intergenic
TTAACACTAGCAAAGGAATT+TGG 0.154850 1_1:+79414108 Msa0046960:CDS
GTCCAATTGGTGGATCAATT+TGG 0.216324 1_1:+79414576 Msa0046960:CDS
GAATCCTCTTCCGCCGCTTT+TGG 0.241567 1_1:-79414325 None:intergenic
GTATGTCTTCCATCTTATTA+TGG 0.265624 1_1:-79414076 None:intergenic
AAGATCTTCTTTAAGTTGAT+TGG 0.271099 1_1:-79413895 None:intergenic
TCCAATTGGTGGATCAATTT+GGG 0.272796 1_1:+79414577 Msa0046960:CDS
CTTTCATGCAATGATGGAAT+TGG 0.295338 1_1:+79414260 Msa0046960:CDS
AGATCAATTTCTTGCTTAAG+AGG 0.316151 1_1:-79417174 None:intergenic
CCATCTTCGACCAAACATTA+AGG 0.321091 1_1:+79414674 Msa0046960:CDS
ATCAATTTGGGCTTAGAAAA+TGG 0.323686 1_1:+79414589 Msa0046960:CDS
GGTTCTTCCTCTTGGCATTT+AGG 0.324518 1_1:-79416855 None:intergenic
CATTGTCCCTTGATTTGATT+GGG 0.325873 1_1:-79414377 None:intergenic
GGCGTTCCAGTGGTTCTTGA+TGG 0.329167 1_1:-79416821 None:intergenic
AATTATGAGTTTGGATCATA+TGG 0.334435 1_1:+79417129 Msa0046960:CDS
CCATTGTCCCTTGATTTGAT+TGG 0.338992 1_1:-79414378 None:intergenic
TAACACTAGCAAAGGAATTT+GGG 0.340281 1_1:+79414109 Msa0046960:CDS
GGCATTTAGGCGGCGCTTAG+TGG 0.342982 1_1:-79416842 None:intergenic
TCTTCCATCTTATTATGGTT+TGG 0.349975 1_1:-79414071 None:intergenic
TCATTACCATTGAATGTCAT+TGG 0.362180 1_1:-79417075 None:intergenic
AACCCACAAATTTCGTTCTC+TGG 0.372683 1_1:-79417048 None:intergenic
AAGAATGACACCTTAATGTT+TGG 0.374739 1_1:-79414684 None:intergenic
TTGTAGGGTTCTTGTCCAAT+TGG 0.386156 1_1:+79414563 Msa0046960:intron
TTTGTTCCAATGACATTCAA+TGG 0.400640 1_1:+79417069 Msa0046960:CDS
GAAAACAATGCAGAGATAGA+TGG 0.411884 1_1:+79414646 Msa0046960:CDS
AAATTCCTTTGCTAGTGTTA+AGG 0.414690 1_1:-79414106 None:intergenic
ACTACTTCTAAAATACATAA+TGG 0.416714 1_1:+79416900 Msa0046960:CDS
ACCATGATGAATTATGAGTT+TGG 0.416825 1_1:+79417120 Msa0046960:CDS
CTTACCTCGGTTCTTCCTCT+TGG 0.419409 1_1:-79416863 None:intergenic
AAGTTTCTGAAAGGCAGAAT+TGG 0.420799 1_1:+79414624 Msa0046960:CDS
ATCGAAGCTCACAAAATAGT+TGG 0.441695 1_1:+79416748 Msa0046960:CDS
TAGGGTTCTTGTCCAATTGG+TGG 0.446482 1_1:+79414566 Msa0046960:intron
GAAAGATCTCCTTGAAGCTC+AGG 0.449302 1_1:-79414242 None:intergenic
ATGACATTCAATGGTAATGA+TGG 0.449667 1_1:+79417078 Msa0046960:CDS
CCTTAATGTTTGGTCGAAGA+TGG 0.450935 1_1:-79414674 None:intergenic
TAAGTTGATTGGACTGACTT+TGG 0.453366 1_1:-79413884 None:intergenic
GCCCAAATTGATCCACCAAT+TGG 0.455221 1_1:-79414578 None:intergenic
TCAGTTAATCCTGAGCTTCA+AGG 0.459950 1_1:+79414233 Msa0046960:CDS
TACCGATGGGTTGGGATCAA+AGG 0.460025 1_1:-79413981 None:intergenic
TTCCAGAGAACGAAATTTGT+GGG 0.460640 1_1:+79417046 Msa0046960:CDS
TAGCCTTGTACCGATGGGTT+GGG 0.464899 1_1:-79413989 None:intergenic
GAAATTTCAAGAAGATTGCC+AGG 0.467461 1_1:+79416784 Msa0046960:CDS
GATGGAATGGCAAGTGGATC+TGG 0.471586 1_1:+79417096 Msa0046960:CDS
TAAGCAAGAAATTGATCTCA+TGG 0.473623 1_1:+79417179 Msa0046960:CDS
CAATGCTAAGGAAGTTGAAA+AGG 0.475917 1_1:+79416930 Msa0046960:CDS
TGGTTTGGTGTAAAGACCAT+TGG 0.479856 1_1:-79414056 None:intergenic
TCTTGCTTAAGAGGAACCTC+AGG 0.484485 1_1:-79417165 None:intergenic
GATCAAAGGGAATGGGCTGA+TGG 0.486143 1_1:-79413967 None:intergenic
ATGATGATTCCTTCTCAACT+AGG 0.489341 1_1:+79413816 Msa0046960:CDS
GTGACCAAAAGCGGCGGAAG+AGG 0.490487 1_1:+79414321 Msa0046960:CDS
AACCGAGGTAAGAGTTCAAA+GGG 0.493375 1_1:+79416874 Msa0046960:CDS
TGGTGAAACTTCGCAACCTC+GGG 0.496923 1_1:+79414160 Msa0046960:CDS
CTTTCAGAAACTTAGCAATA+CGG 0.498946 1_1:-79414614 None:intergenic
GGAGATCTTTCATGCAATGA+TGG 0.500133 1_1:+79414254 Msa0046960:CDS
CAAGGATCCCAATCAAATCA+AGG 0.510784 1_1:+79414370 Msa0046960:CDS
ATCAAAGGGAATGGGCTGAT+GGG 0.514527 1_1:-79413966 None:intergenic
ACCGATGGGTTGGGATCAAA+GGG 0.517315 1_1:-79413980 None:intergenic
ACAAGGCTACTCACACCAAT+GGG 0.518281 1_1:+79414003 Msa0046960:CDS
TCCCCTTTGAACTCTTACCT+CGG 0.521132 1_1:-79416876 None:intergenic
TATGATTTCAGAAGGATTCG+TGG 0.521182 1_1:+79416701 Msa0046960:intron
GATCCCAACCCATCGGTACA+AGG 0.525099 1_1:+79413986 Msa0046960:CDS
ATTCCAGAGAACGAAATTTG+TGG 0.531565 1_1:+79417045 Msa0046960:CDS
ATGGAGTTCTCAGTGCGCCC+TGG 0.535313 1_1:-79416802 None:intergenic
TGTGAGTAGCCTTGTACCGA+TGG 0.538156 1_1:-79413995 None:intergenic
ACAAAATAGTTGGAAACAAG+TGG 0.538861 1_1:+79416758 Msa0046960:CDS
TTTCAGAAACTTAGCAATAC+GGG 0.540409 1_1:-79414613 None:intergenic
AGAACTCCATCAAGAACCAC+TGG 0.541811 1_1:+79416815 Msa0046960:CDS
GGGAATGGGCTGATGGGCAA+AGG 0.545009 1_1:-79413960 None:intergenic
TGGGTTGGGATCAAAGGGAA+TGG 0.546058 1_1:-79413975 None:intergenic
GAATTCTCTCTGAGACCCAT+TGG 0.546774 1_1:-79414018 None:intergenic
TACAAGGCTACTCACACCAA+TGG 0.551027 1_1:+79414002 Msa0046960:CDS
TACACCAAACCATAATAAGA+TGG 0.551181 1_1:+79414067 Msa0046960:CDS
AATGGAAGTCATCAATGCTA+AGG 0.554756 1_1:+79416918 Msa0046960:CDS
TGAGTTTGGATCATATGGAA+TGG 0.555173 1_1:+79417134 Msa0046960:CDS
GTAGCCTTGTACCGATGGGT+TGG 0.557641 1_1:-79413990 None:intergenic
ATATTTGAACCTAGTTGAGA+AGG 0.559154 1_1:-79413825 None:intergenic
GGGTTGGGATCAAAGGGAAT+GGG 0.559427 1_1:-79413974 None:intergenic
ATGGTGAAACTTCGCAACCT+CGG 0.562590 1_1:+79414159 Msa0046960:CDS
ATTCAATGGTAATGATGGAA+TGG 0.566386 1_1:+79417083 Msa0046960:CDS
CGTATTGCTAAGTTTCTGAA+AGG 0.570187 1_1:+79414615 Msa0046960:CDS
GGCGCTTAGTGGCGTTCCAG+TGG 0.578401 1_1:-79416831 None:intergenic
TCCAAACTCATAATTCATCA+TGG 0.580265 1_1:-79417121 None:intergenic
TCCCTTTGATCCCAACCCAT+CGG 0.582216 1_1:+79413979 Msa0046960:CDS
CCAATCAAATCAAGGGACAA+TGG 0.585514 1_1:+79414378 Msa0046960:CDS
AGCTAGTGATGGTGATAGAG+AGG 0.585984 1_1:-79414189 None:intergenic
GAACCGAGGTAAGAGTTCAA+AGG 0.588626 1_1:+79416873 Msa0046960:CDS
TAGTTGAGAAGGAATCATCA+TGG 0.595698 1_1:-79413814 None:intergenic
TATGTGGTGTAATGTGATGG+TGG 0.597872 1_1:-79413855 None:intergenic
CATCAGTGCTCAAAATCCAA+TGG 0.604920 1_1:+79414040 Msa0046960:CDS
AGTTGAGAAGGAATCATCAT+GGG 0.606652 1_1:-79413813 None:intergenic
AAATATGTGGTGTAATGTGA+TGG 0.608872 1_1:-79413858 None:intergenic
GACGTATTCTATGAGCATGA+TGG 0.609671 1_1:+79416960 Msa0046960:CDS
GGGACAATGGACTTCAAATG+AGG 0.612328 1_1:+79414391 Msa0046960:CDS
GGATTCGTGGACCGAAGAGG+AGG 0.618178 1_1:+79416714 Msa0046960:CDS
GGTCGCCTTAACACTAGCAA+AGG 0.621057 1_1:+79414101 Msa0046960:CDS
GCTAGTGATGGTGATAGAGA+GGG 0.625596 1_1:-79414188 None:intergenic
CTGACTTTGGTACAAATATG+TGG 0.626211 1_1:-79413871 None:intergenic
AAGGATCCCAATCAAATCAA+GGG 0.629321 1_1:+79414371 Msa0046960:CDS
GAAGGATTCGTGGACCGAAG+AGG 0.631996 1_1:+79416711 Msa0046960:intron
GGTAATGATGGAATGGCAAG+TGG 0.632233 1_1:+79417090 Msa0046960:CDS
AATAAGATGGAAGACATACA+TGG 0.632344 1_1:+79414080 Msa0046960:CDS
TCGTGCTCAGTGACCAAAAG+CGG 0.634605 1_1:+79414312 Msa0046960:CDS
TAATAATGAAATTCAACACA+AGG 0.640392 1_1:+79414352 Msa0046960:CDS
ATGCTCATAGAATACGTCAT+CGG 0.644204 1_1:-79416955 None:intergenic
AATGGACTTCAAATGAGGAT+CGG 0.644601 1_1:+79414396 Msa0046960:CDS
AAATTTCAAGAAGATTGCCA+GGG 0.649002 1_1:+79416785 Msa0046960:CDS
TGCTCAGTGACCAAAAGCGG+CGG 0.658516 1_1:+79414315 Msa0046960:CDS
GTGGTGTAATGTGATGGTGG+AGG 0.664794 1_1:-79413852 None:intergenic
GTGAGTAGCCTTGTACCGAT+GGG 0.667463 1_1:-79413994 None:intergenic
TCTTCCTCTTGGCATTTAGG+CGG 0.677072 1_1:-79416852 None:intergenic
TGTGCATCATAAGCTAGTGA+TGG 0.696046 1_1:-79414200 None:intergenic
GATAGAGAGGGACTTACCCG+AGG 0.707182 1_1:-79414176 None:intergenic
AGCGCCGCCTAAATGCCAAG+AGG 0.709993 1_1:+79416848 Msa0046960:CDS
ACCGAGGTAAGAGTTCAAAG+GGG 0.778877 1_1:+79416875 Msa0046960:CDS
AATGCCAAGAGGAAGAACCG+AGG 0.780461 1_1:+79416859 Msa0046960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTGTTTTTATTTTTGT+AGG + chr1_1:79414547-79414566 Msa0046960:intron 10.0%
!!! TAATTGTTTTTATTTTTGTA+GGG + chr1_1:79414548-79414567 Msa0046960:intron 10.0%
!! ATATTAATTAAAAACACTTA+TGG - chr1_1:79415203-79415222 None:intergenic 10.0%
!!! AAGTGTTTTTAATTAATATT+TGG + chr1_1:79415204-79415223 Msa0046960:intron 10.0%
!!! AGTGTTTTTAATTAATATTT+GGG + chr1_1:79415205-79415224 Msa0046960:intron 10.0%
!! AAATTACCAAAATTAAAAAT+AGG - chr1_1:79415556-79415575 None:intergenic 10.0%
!!! TATTTTTATATAATCAATGT+AGG - chr1_1:79415656-79415675 None:intergenic 10.0%
!! ATTCATAAATACTTATTAAA+TGG - chr1_1:79416239-79416258 None:intergenic 10.0%
!! TGTAAAAATCAAATATGTTA+AGG - chr1_1:79414802-79414821 None:intergenic 15.0%
!! AAATAAAACGAAAAAGATTA+TGG + chr1_1:79414842-79414861 Msa0046960:intron 15.0%
!! TAGTTTAATAAACATTTCAT+TGG + chr1_1:79414954-79414973 Msa0046960:intron 15.0%
!!! GTGTTTTTAATTAATATTTG+GGG + chr1_1:79415206-79415225 Msa0046960:intron 15.0%
!!! TGTTTTTAATTAATATTTGG+GGG + chr1_1:79415207-79415226 Msa0046960:intron 15.0%
!! CTCGAAAAAAAATTTAAAAA+TGG - chr1_1:79415388-79415407 None:intergenic 15.0%
!!! TCTTTACCTATTTTTAATTT+TGG + chr1_1:79415547-79415566 Msa0046960:intron 15.0%
!!! AATAACAATTGGTTATATTT+TGG - chr1_1:79416437-79416456 None:intergenic 15.0%
!! GGTTAATTATATTTAATGTA+CGG - chr1_1:79416653-79416672 None:intergenic 15.0%
!! ACAAAAAATCTCTTTCAATA+TGG + chr1_1:79414140-79414159 Msa0046960:CDS 20.0%
!! TAATAATGAAATTCAACACA+AGG + chr1_1:79414352-79414371 Msa0046960:CDS 20.0%
!! TTTATAAAGAAAAGCAGAAT+TGG + chr1_1:79414919-79414938 Msa0046960:intron 20.0%
!!! AAAAATTAGTTCTTGATGAT+AGG - chr1_1:79415074-79415093 None:intergenic 20.0%
!!! GTTTTTAATTAATATTTGGG+GGG + chr1_1:79415208-79415227 Msa0046960:intron 20.0%
!!! TTTTTTTTTTGAGATAGTCA+CGG + chr1_1:79415261-79415280 Msa0046960:intron 20.0%
!!! TTTTATGAATTAAAGTGCAA+AGG - chr1_1:79415465-79415484 None:intergenic 20.0%
!! TAAAAAAACAAATGAGAGTT+TGG - chr1_1:79415722-79415741 None:intergenic 20.0%
!!! GTTAATTTGTTAGTATTTGA+TGG + chr1_1:79415754-79415773 Msa0046960:intron 20.0%
!! AAAGAGTAAAGTTATAAGAA+TGG - chr1_1:79415801-79415820 None:intergenic 20.0%
!! ATACTAGAGATAAAGTATAT+AGG - chr1_1:79416033-79416052 None:intergenic 20.0%
!!! TGAATTATTTTTAAAGGAAG+TGG - chr1_1:79416112-79416131 None:intergenic 20.0%
!!! TCCTTTAAAAATAATTCATG+TGG + chr1_1:79416114-79416133 Msa0046960:intron 20.0%
!!! TCCACATGAATTATTTTTAA+AGG - chr1_1:79416118-79416137 None:intergenic 20.0%
!! TCAAATAGTTTATCATACAT+TGG + chr1_1:79416340-79416359 Msa0046960:intron 20.0%
!! TTAAACTTTACTAAATTCGT+AGG + chr1_1:79416389-79416408 Msa0046960:intron 20.0%
!!! TATTTTGTTAGATAGCTAAT+TGG + chr1_1:79416591-79416610 Msa0046960:intron 20.0%
!!! ACTACTTCTAAAATACATAA+TGG + chr1_1:79416900-79416919 Msa0046960:CDS 20.0%
!!! AAGATCTTCTTTAAGTTGAT+TGG - chr1_1:79413898-79413917 None:intergenic 25.0%
!! TAAAGAAGATCTTTTGAATG+AGG + chr1_1:79413905-79413924 Msa0046960:CDS 25.0%
!! TCATTCTTTTGAATCATTTC+TGG + chr1_1:79414699-79414718 Msa0046960:intron 25.0%
!! CATTCTTTTGAATCATTTCT+GGG + chr1_1:79414700-79414719 Msa0046960:intron 25.0%
! AACACTTATGGATAAAACTT+AGG - chr1_1:79415191-79415210 None:intergenic 25.0%
!! ATTATTTACCCTTGTTTCTT+AGG + chr1_1:79415231-79415250 Msa0046960:intron 25.0%
!! TTATTTACCCTTGTTTCTTA+GGG + chr1_1:79415232-79415251 Msa0046960:intron 25.0%
! AAAAAATCCCTAAGAAACAA+GGG - chr1_1:79415242-79415261 None:intergenic 25.0%
! AAAAAAATCCCTAAGAAACA+AGG - chr1_1:79415243-79415262 None:intergenic 25.0%
!!! TAAATTTTTTTTCGAGCAAG+TGG + chr1_1:79415392-79415411 Msa0046960:intron 25.0%
!! TTGTTTGAAATCTAGTATTG+AGG + chr1_1:79415501-79415520 Msa0046960:intron 25.0%
! AAAACAAAAACACATGTGAA+AGG - chr1_1:79415629-79415648 None:intergenic 25.0%
!!! AATTTGTTAGTATTTGATGG+AGG + chr1_1:79415757-79415776 Msa0046960:intron 25.0%
! CCAATTGTATGAATAACAAT+TGG - chr1_1:79416448-79416467 None:intergenic 25.0%
!! CCAATTGTTATTCATACAAT+TGG + chr1_1:79416445-79416464 Msa0046960:intron 25.0%
! TTTAACACATATAGGCATAT+TGG - chr1_1:79416478-79416497 None:intergenic 25.0%
! TATGCCTATATGTGTTAAAT+TGG + chr1_1:79416479-79416498 Msa0046960:intron 25.0%
! AACACCAATTTAACACATAT+AGG - chr1_1:79416486-79416505 None:intergenic 25.0%
!! GAATTTTCCTGTTGTTAAAT+TGG + chr1_1:79416507-79416526 Msa0046960:intron 25.0%
! TCATACATAACAATATGTGT+GGG - chr1_1:79416686-79416705 None:intergenic 25.0%
! ATCATACATAACAATATGTG+TGG - chr1_1:79416687-79416706 None:intergenic 25.0%
! TTGTTATGTATGATTTCAGA+AGG + chr1_1:79416693-79416712 Msa0046960:intron 25.0%
! AATTATGAGTTTGGATCATA+TGG + chr1_1:79417129-79417148 Msa0046960:CDS 25.0%
ATATTTGAACCTAGTTGAGA+AGG - chr1_1:79413828-79413847 None:intergenic 30.0%
AAATATGTGGTGTAATGTGA+TGG - chr1_1:79413861-79413880 None:intergenic 30.0%
TACACCAAACCATAATAAGA+TGG + chr1_1:79414067-79414086 Msa0046960:CDS 30.0%
TCTTCCATCTTATTATGGTT+TGG - chr1_1:79414074-79414093 None:intergenic 30.0%
GTATGTCTTCCATCTTATTA+TGG - chr1_1:79414079-79414098 None:intergenic 30.0%
AATAAGATGGAAGACATACA+TGG + chr1_1:79414080-79414099 Msa0046960:CDS 30.0%
AAATTCCTTTGCTAGTGTTA+AGG - chr1_1:79414109-79414128 None:intergenic 30.0%
TTAACACTAGCAAAGGAATT+TGG + chr1_1:79414108-79414127 Msa0046960:CDS 30.0%
TAACACTAGCAAAGGAATTT+GGG + chr1_1:79414109-79414128 Msa0046960:CDS 30.0%
! GAATTGTTGATCATTTTCTC+GGG - chr1_1:79414294-79414313 None:intergenic 30.0%
! CGAATTGTTGATCATTTTCT+CGG - chr1_1:79414295-79414314 None:intergenic 30.0%
ATCAATTTGGGCTTAGAAAA+TGG + chr1_1:79414589-79414608 Msa0046960:CDS 30.0%
TTTCAGAAACTTAGCAATAC+GGG - chr1_1:79414616-79414635 None:intergenic 30.0%
CTTTCAGAAACTTAGCAATA+CGG - chr1_1:79414617-79414636 None:intergenic 30.0%
AAGAATGACACCTTAATGTT+TGG - chr1_1:79414687-79414706 None:intergenic 30.0%
AAAATAGACAACTAGACTAG+TGG - chr1_1:79415009-79415028 None:intergenic 30.0%
CTAAAAAAGCAAGAGATCTA+AGG - chr1_1:79415304-79415323 None:intergenic 30.0%
!!! TCTGTTTTTGTACTTTTTCG+AGG + chr1_1:79415328-79415347 Msa0046960:intron 30.0%
!!! CTGTTTTTGTACTTTTTCGA+GGG + chr1_1:79415329-79415348 Msa0046960:intron 30.0%
GGAAAAATTGTACAAGAAGA+GGG - chr1_1:79415367-79415386 None:intergenic 30.0%
TGGAAAAATTGTACAAGAAG+AGG - chr1_1:79415368-79415387 None:intergenic 30.0%
ATGAATTAAAGTGCAAAGGA+AGG - chr1_1:79415461-79415480 None:intergenic 30.0%
!!! CACGAGTTTTTTTCACTTAA+TGG + chr1_1:79415695-79415714 Msa0046960:intron 30.0%
CTTACAAATGAGAGATACAA+GGG - chr1_1:79415854-79415873 None:intergenic 30.0%
TCTTACAAATGAGAGATACA+AGG - chr1_1:79415855-79415874 None:intergenic 30.0%
TGTAAAATCAAGACACAAGA+CGG - chr1_1:79415995-79416014 None:intergenic 30.0%
AGATATTCAACTTCAAGTGT+TGG - chr1_1:79416278-79416297 None:intergenic 30.0%
TCAAACACCAATTTAACAAC+AGG - chr1_1:79416517-79416536 None:intergenic 30.0%
!! ATATGTGTGGGTTAGATATA+TGG - chr1_1:79416674-79416693 None:intergenic 30.0%
!!! TAATCTTTTTTCCTCCTCTT+CGG - chr1_1:79416728-79416747 None:intergenic 30.0%
ACAAAATAGTTGGAAACAAG+TGG + chr1_1:79416758-79416777 Msa0046960:CDS 30.0%
AAATTTCAAGAAGATTGCCA+GGG + chr1_1:79416785-79416804 Msa0046960:CDS 30.0%
TTCTCTGAGCTTTCAAAATT+TGG - chr1_1:79417000-79417019 None:intergenic 30.0%
!!! GAGAATGATTTTAGAACTGA+AGG + chr1_1:79417015-79417034 Msa0046960:CDS 30.0%
!!! TGATTTTAGAACTGAAGGTT+TGG + chr1_1:79417020-79417039 Msa0046960:CDS 30.0%
TTTGTTCCAATGACATTCAA+TGG + chr1_1:79417069-79417088 Msa0046960:CDS 30.0%
TCATTACCATTGAATGTCAT+TGG - chr1_1:79417078-79417097 None:intergenic 30.0%
! ATGACATTCAATGGTAATGA+TGG + chr1_1:79417078-79417097 Msa0046960:CDS 30.0%
! ATTCAATGGTAATGATGGAA+TGG + chr1_1:79417083-79417102 Msa0046960:CDS 30.0%
ACCATGATGAATTATGAGTT+TGG + chr1_1:79417120-79417139 Msa0046960:CDS 30.0%
TCCAAACTCATAATTCATCA+TGG - chr1_1:79417124-79417143 None:intergenic 30.0%
AGATCAATTTCTTGCTTAAG+AGG - chr1_1:79417177-79417196 None:intergenic 30.0%
TAAGCAAGAAATTGATCTCA+TGG + chr1_1:79417179-79417198 Msa0046960:CDS 30.0%
ATGATGATTCCTTCTCAACT+AGG + chr1_1:79413816-79413835 Msa0046960:CDS 35.0%
CTGACTTTGGTACAAATATG+TGG - chr1_1:79413874-79413893 None:intergenic 35.0%
!! TAAGTTGATTGGACTGACTT+TGG - chr1_1:79413887-79413906 None:intergenic 35.0%
AGAAAAACTAGAGTGATGGT+TGG - chr1_1:79413931-79413950 None:intergenic 35.0%
TTGCAGAAAAACTAGAGTGA+TGG - chr1_1:79413935-79413954 None:intergenic 35.0%
!!! TCACTCTAGTTTTTCTGCAA+TGG + chr1_1:79413935-79413954 Msa0046960:CDS 35.0%
! CTTTCATGCAATGATGGAAT+TGG + chr1_1:79414260-79414279 Msa0046960:CDS 35.0%
AAGGATCCCAATCAAATCAA+GGG + chr1_1:79414371-79414390 Msa0046960:CDS 35.0%
! CATTGTCCCTTGATTTGATT+GGG - chr1_1:79414380-79414399 None:intergenic 35.0%
! AATGGACTTCAAATGAGGAT+CGG + chr1_1:79414396-79414415 Msa0046960:CDS 35.0%
! TCCAATTGGTGGATCAATTT+GGG + chr1_1:79414577-79414596 Msa0046960:CDS 35.0%
CGTATTGCTAAGTTTCTGAA+AGG + chr1_1:79414615-79414634 Msa0046960:CDS 35.0%
! AAGTTTCTGAAAGGCAGAAT+TGG + chr1_1:79414624-79414643 Msa0046960:CDS 35.0%
GAAAACAATGCAGAGATAGA+TGG + chr1_1:79414646-79414665 Msa0046960:CDS 35.0%
!!! TTGTACTTTTTCGAGGGTTT+TGG + chr1_1:79415335-79415354 Msa0046960:intron 35.0%
!!! TTTTTTCGAGCAAGTGGTAT+AGG + chr1_1:79415398-79415417 Msa0046960:intron 35.0%
AGAGATACAAGGGAGTTATA+AGG - chr1_1:79415844-79415863 None:intergenic 35.0%
TATCTCTAGTATGTGACTCT+TGG + chr1_1:79416041-79416060 Msa0046960:intron 35.0%
TATGATTTCAGAAGGATTCG+TGG + chr1_1:79416701-79416720 Msa0046960:intron 35.0%
ATCGAAGCTCACAAAATAGT+TGG + chr1_1:79416748-79416767 Msa0046960:CDS 35.0%
GAAATTTCAAGAAGATTGCC+AGG + chr1_1:79416784-79416803 Msa0046960:CDS 35.0%
AATGGAAGTCATCAATGCTA+AGG + chr1_1:79416918-79416937 Msa0046960:CDS 35.0%
CAATGCTAAGGAAGTTGAAA+AGG + chr1_1:79416930-79416949 Msa0046960:CDS 35.0%
ATGCTCATAGAATACGTCAT+CGG - chr1_1:79416958-79416977 None:intergenic 35.0%
ATTCCAGAGAACGAAATTTG+TGG + chr1_1:79417045-79417064 Msa0046960:CDS 35.0%
TTCCAGAGAACGAAATTTGT+GGG + chr1_1:79417046-79417065 Msa0046960:CDS 35.0%
TGAGTTTGGATCATATGGAA+TGG + chr1_1:79417134-79417153 Msa0046960:CDS 35.0%
TATGTGGTGTAATGTGATGG+TGG - chr1_1:79413858-79413877 None:intergenic 40.0%
CATCAGTGCTCAAAATCCAA+TGG + chr1_1:79414040-79414059 Msa0046960:CDS 40.0%
!! TGGTTTGGTGTAAAGACCAT+TGG - chr1_1:79414059-79414078 None:intergenic 40.0%
TGTGCATCATAAGCTAGTGA+TGG - chr1_1:79414203-79414222 None:intergenic 40.0%
TCAGTTAATCCTGAGCTTCA+AGG + chr1_1:79414233-79414252 Msa0046960:CDS 40.0%
GGAGATCTTTCATGCAATGA+TGG + chr1_1:79414254-79414273 Msa0046960:CDS 40.0%
CAAGGATCCCAATCAAATCA+AGG + chr1_1:79414370-79414389 Msa0046960:CDS 40.0%
! CCATTGTCCCTTGATTTGAT+TGG - chr1_1:79414381-79414400 None:intergenic 40.0%
CCAATCAAATCAAGGGACAA+TGG + chr1_1:79414378-79414397 Msa0046960:CDS 40.0%
TTGTAGGGTTCTTGTCCAAT+TGG + chr1_1:79414563-79414582 Msa0046960:intron 40.0%
! GTCCAATTGGTGGATCAATT+TGG + chr1_1:79414576-79414595 Msa0046960:CDS 40.0%
CCTTAATGTTTGGTCGAAGA+TGG - chr1_1:79414677-79414696 None:intergenic 40.0%
CCATCTTCGACCAAACATTA+AGG + chr1_1:79414674-79414693 Msa0046960:CDS 40.0%
!!! CTTTTTCGAGGGTTTTGGTT+TGG + chr1_1:79415340-79415359 Msa0046960:intron 40.0%
!! GAGTTATAAGGTTGACTTGG+TGG - chr1_1:79415832-79415851 None:intergenic 40.0%
AGGGAGTTATAAGGTTGACT+TGG - chr1_1:79415835-79415854 None:intergenic 40.0%
! GTATCGATCATAAGCTTACG+TGG - chr1_1:79416308-79416327 None:intergenic 40.0%
! CATCAATTTTGTTCTCCGCA+CGG + chr1_1:79416541-79416560 Msa0046960:intron 40.0%
AACCGAGGTAAGAGTTCAAA+GGG + chr1_1:79416874-79416893 Msa0046960:CDS 40.0%
GACGTATTCTATGAGCATGA+TGG + chr1_1:79416960-79416979 Msa0046960:CDS 40.0%
AACCCACAAATTTCGTTCTC+TGG - chr1_1:79417051-79417070 None:intergenic 40.0%
!!! TGGAATGGAGTTTTTTCCTG+AGG + chr1_1:79417149-79417168 Msa0046960:CDS 40.0%
!! ATCAAAGGGAATGGGCTGAT+GGG - chr1_1:79413969-79413988 None:intergenic 45.0%
TACAAGGCTACTCACACCAA+TGG + chr1_1:79414002-79414021 Msa0046960:CDS 45.0%
ACAAGGCTACTCACACCAAT+GGG + chr1_1:79414003-79414022 Msa0046960:CDS 45.0%
!! GAATTCTCTCTGAGACCCAT+TGG - chr1_1:79414021-79414040 None:intergenic 45.0%
ATGGTGAAACTTCGCAACCT+CGG + chr1_1:79414159-79414178 Msa0046960:CDS 45.0%
! GCTAGTGATGGTGATAGAGA+GGG - chr1_1:79414191-79414210 None:intergenic 45.0%
! AGCTAGTGATGGTGATAGAG+AGG - chr1_1:79414192-79414211 None:intergenic 45.0%
GAAAGATCTCCTTGAAGCTC+AGG - chr1_1:79414245-79414264 None:intergenic 45.0%
! GGGACAATGGACTTCAAATG+AGG + chr1_1:79414391-79414410 Msa0046960:CDS 45.0%
TAGGGTTCTTGTCCAATTGG+TGG + chr1_1:79414566-79414585 Msa0046960:intron 45.0%
GCCCAAATTGATCCACCAAT+TGG - chr1_1:79414581-79414600 None:intergenic 45.0%
GAGCAAGTGGTATAGGATAG+AGG + chr1_1:79415405-79415424 Msa0046960:intron 45.0%
AAGTGGTATAGGATAGAGGC+TGG + chr1_1:79415409-79415428 Msa0046960:intron 45.0%
GTATAGGATAGAGGCTGGTA+GGG + chr1_1:79415414-79415433 Msa0046960:intron 45.0%
!! AGTGCAAAGGAAGGCATCAA+GGG - chr1_1:79415452-79415471 None:intergenic 45.0%
!! AAGTGCAAAGGAAGGCATCA+AGG - chr1_1:79415453-79415472 None:intergenic 45.0%
ACACGTATTTGTTCCCACAG+TGG - chr1_1:79416569-79416588 None:intergenic 45.0%
AGAACTCCATCAAGAACCAC+TGG + chr1_1:79416815-79416834 Msa0046960:CDS 45.0%
TCTTCCTCTTGGCATTTAGG+CGG - chr1_1:79416855-79416874 None:intergenic 45.0%
GGTTCTTCCTCTTGGCATTT+AGG - chr1_1:79416858-79416877 None:intergenic 45.0%
GAACCGAGGTAAGAGTTCAA+AGG + chr1_1:79416873-79416892 Msa0046960:CDS 45.0%
ACCGAGGTAAGAGTTCAAAG+GGG + chr1_1:79416875-79416894 Msa0046960:CDS 45.0%
TCCCCTTTGAACTCTTACCT+CGG - chr1_1:79416879-79416898 None:intergenic 45.0%
! GGTAATGATGGAATGGCAAG+TGG + chr1_1:79417090-79417109 Msa0046960:CDS 45.0%
TCTTGCTTAAGAGGAACCTC+AGG - chr1_1:79417168-79417187 None:intergenic 45.0%
!! ATAAAAAAAAAATATAATCA+AGG - chr1_1:79414491-79414510 None:intergenic 5.0%
!! GTGGTGTAATGTGATGGTGG+AGG - chr1_1:79413855-79413874 None:intergenic 50.0%
!! GATCAAAGGGAATGGGCTGA+TGG - chr1_1:79413970-79413989 None:intergenic 50.0%
GGGTTGGGATCAAAGGGAAT+GGG - chr1_1:79413977-79413996 None:intergenic 50.0%
! TGGGTTGGGATCAAAGGGAA+TGG - chr1_1:79413978-79413997 None:intergenic 50.0%
TCCCTTTGATCCCAACCCAT+CGG + chr1_1:79413979-79413998 Msa0046960:CDS 50.0%
!! ACCGATGGGTTGGGATCAAA+GGG - chr1_1:79413983-79414002 None:intergenic 50.0%
!! TACCGATGGGTTGGGATCAA+AGG - chr1_1:79413984-79414003 None:intergenic 50.0%
!! TAGCCTTGTACCGATGGGTT+GGG - chr1_1:79413992-79414011 None:intergenic 50.0%
!! GTGAGTAGCCTTGTACCGAT+GGG - chr1_1:79413997-79414016 None:intergenic 50.0%
!! TGTGAGTAGCCTTGTACCGA+TGG - chr1_1:79413998-79414017 None:intergenic 50.0%
GGTCGCCTTAACACTAGCAA+AGG + chr1_1:79414101-79414120 Msa0046960:CDS 50.0%
TGGTGAAACTTCGCAACCTC+GGG + chr1_1:79414160-79414179 Msa0046960:CDS 50.0%
TCGTGCTCAGTGACCAAAAG+CGG + chr1_1:79414312-79414331 Msa0046960:CDS 50.0%
GGTATAGGATAGAGGCTGGT+AGG + chr1_1:79415413-79415432 Msa0046960:intron 50.0%
!! GTGCAAAGGAAGGCATCAAG+GGG - chr1_1:79415451-79415470 None:intergenic 50.0%
AATGCCAAGAGGAAGAACCG+AGG + chr1_1:79416859-79416878 Msa0046960:CDS 50.0%
CTTACCTCGGTTCTTCCTCT+TGG - chr1_1:79416866-79416885 None:intergenic 50.0%
GATGGAATGGCAAGTGGATC+TGG + chr1_1:79417096-79417115 Msa0046960:CDS 50.0%
GATCCCAACCCATCGGTACA+AGG + chr1_1:79413986-79414005 Msa0046960:CDS 55.0%
!! GTAGCCTTGTACCGATGGGT+TGG - chr1_1:79413993-79414012 None:intergenic 55.0%
GATAGAGAGGGACTTACCCG+AGG - chr1_1:79414179-79414198 None:intergenic 55.0%
TGCTCAGTGACCAAAAGCGG+CGG + chr1_1:79414315-79414334 Msa0046960:CDS 55.0%
!! GAATCCTCTTCCGCCGCTTT+TGG - chr1_1:79414328-79414347 None:intergenic 55.0%
!! GAAGGCATCAAGGGGCAACT+AGG - chr1_1:79415443-79415462 None:intergenic 55.0%
GAAGGATTCGTGGACCGAAG+AGG + chr1_1:79416711-79416730 Msa0046960:intron 55.0%
GGCGTTCCAGTGGTTCTTGA+TGG - chr1_1:79416824-79416843 None:intergenic 55.0%
!! GGGAATGGGCTGATGGGCAA+AGG - chr1_1:79413963-79413982 None:intergenic 60.0%
GTGACCAAAAGCGGCGGAAG+AGG + chr1_1:79414321-79414340 Msa0046960:CDS 60.0%
GGATTCGTGGACCGAAGAGG+AGG + chr1_1:79416714-79416733 Msa0046960:CDS 60.0%
ATGGAGTTCTCAGTGCGCCC+TGG - chr1_1:79416805-79416824 None:intergenic 60.0%
GGCATTTAGGCGGCGCTTAG+TGG - chr1_1:79416845-79416864 None:intergenic 60.0%
AGCGCCGCCTAAATGCCAAG+AGG + chr1_1:79416848-79416867 Msa0046960:CDS 60.0%
!! TTCTCCGCACGGTGCCACTG+TGG + chr1_1:79416552-79416571 Msa0046960:intron 65.0%
!! TCTCCGCACGGTGCCACTGT+GGG + chr1_1:79416553-79416572 Msa0046960:intron 65.0%
GTTCCCACAGTGGCACCGTG+CGG - chr1_1:79416559-79416578 None:intergenic 65.0%
GGCGCTTAGTGGCGTTCCAG+TGG - chr1_1:79416834-79416853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79413816 79417224 79413816 ID=Msa0046960;Name=Msa0046960
chr1_1 mRNA 79413816 79417224 79413816 ID=Msa0046960-mRNA-1;Parent=Msa0046960;Name=Msa0046960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|413
chr1_1 exon 79413816 79414417 79413816 ID=Msa0046960-mRNA-1:exon:27412;Parent=Msa0046960-mRNA-1
chr1_1 exon 79414569 79414695 79414569 ID=Msa0046960-mRNA-1:exon:27413;Parent=Msa0046960-mRNA-1
chr1_1 exon 79416712 79417224 79416712 ID=Msa0046960-mRNA-1:exon:27414;Parent=Msa0046960-mRNA-1
chr1_1 CDS 79413816 79414417 79413816 ID=Msa0046960-mRNA-1:cds;Parent=Msa0046960-mRNA-1
chr1_1 CDS 79414569 79414695 79414569 ID=Msa0046960-mRNA-1:cds;Parent=Msa0046960-mRNA-1
chr1_1 CDS 79416712 79417224 79416712 ID=Msa0046960-mRNA-1:cds;Parent=Msa0046960-mRNA-1
Gene Sequence

>Msa0046960

ATGATGATTCCTTCTCAACTAGGTTCAAATATTTCACCTCCACCATCACATTACACCACATATTTGTACCAAAGTCAGTCCAATCAACTTAAAGAAGATCTTTTGAATGAGGCCAACCATCACTCTAGTTTTTCTGCAATGGTTCCTTTGCCCATCAGCCCATTCCCTTTGATCCCAACCCATCGGTACAAGGCTACTCACACCAATGGGTCTCAGAGAGAATTCATCAGTGCTCAAAATCCAATGGTCTTTACACCAAACCATAATAAGATGGAAGACATACATGGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGTCTACAAAAAATCTCTTTCAATATGGTGAAACTTCGCAACCTCGGGTAAGTCCCTCTCTATCACCATCACTAGCTTATGATGCACATCGATCTGTGTCAGTTAATCCTGAGCTTCAAGGAGATCTTTCATGCAATGATGGAATTGGAAACAAATCCCGAGAAAATGATCAACAATTCGTGCTCAGTGACCAAAAGCGGCGGAAGAGGATTCAAAATAATAATGAAATTCAACACAAGGATCCCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGGTTCTTGTCCAATTGGTGGATCAATTTGGGCTTAGAAAATGGTCCCGTATTGCTAAGTTTCTGAAAGGCAGAATTGGAAAACAATGCAGAGATAGATGGAATAACCATCTTCGACCAAACATTAAGAAGGATTCGTGGACCGAAGAGGAGGAAAAAAGATTAATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAGAAGATTGCCAGGGCGCACTGAGAACTCCATCAAGAACCACTGGAACGCCACTAAGCGCCGCCTAAATGCCAAGAGGAAGAACCGAGGTAAGAGTTCAAAGGGGATACTACTTCTAAAATACATAATGGAAGTCATCAATGCTAAGGAAGTTGAAAAGGAGCCGATGACGTATTCTATGAGCATGATGGACATTAGAAATCAACCAAATTTTGAAAGCTCAGAGAATGATTTTAGAACTGAAGGTTTGGCTATTCCAGAGAACGAAATTTGTGGGTTTGTTCCAATGACATTCAATGGTAATGATGGAATGGCAAGTGGATCTGGTACCATGATGAATTATGAGTTTGGATCATATGGAATGGAGTTTTTTCCTGAGGTTCCTCTTAAGCAAGAAATTGATCTCATGGAGATGATCTATAAAAACCCTTAA
Protein sequence

>Msa0046960

MMIPSQLGSNISPPPSHYTTYLYQSQSNQLKEDLLNEANHHSSFSAMVPLPISPFPLIPTHRYKATHTNGSQREFISAQNPMVFTPNHNKMEDIHGRLNTSKGIWDLSTKNLFQYGETSQPRVSPSLSPSLAYDAHRSVSVNPELQGDLSCNDGIGNKSRENDQQFVLSDQKRRKRIQNNNEIQHKDPNQIKGQWTSNEDRVLVQLVDQFGLRKWSRIAKFLKGRIGKQCRDRWNNHLRPNIKKDSWTEEEEKRLIEAHKIVGNKWTEISRRLPGRTENSIKNHWNATKRRLNAKRKNRGKSSKGILLLKYIMEVINAKEVEKEPMTYSMSMMDIRNQPNFESSENDFRTEGLAIPENEICGFVPMTFNGNDGMASGSGTMMNYEFGSYGMEFFPEVPLKQEIDLMEMIYKNP*