Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048460 | XP_024636868.1 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 3.10e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048460 | sp|Q8L3W1|VRN1_ARATH | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.10e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048460 | A0A396IHE6 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 1.48e-133 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0048460 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048460 | MtrunA17_Chr4g0067431 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 2.85e-137 | 391 |
| Msa0048460 | MtrunA17_Chr1g0163221 | 56.958 | 309 | 104 | 8 | 1 | 303 | 1 | 286 | 8.96e-98 | 292 |
| Msa0048460 | MtrunA17_Chr6g0467351 | 62.712 | 236 | 70 | 4 | 1 | 228 | 1 | 226 | 3.09e-93 | 276 |
| Msa0048460 | MtrunA17_Chr1g0163061 | 55.094 | 265 | 69 | 3 | 1 | 215 | 1 | 265 | 2.89e-71 | 221 |
| Msa0048460 | MtrunA17_Chr1g0163131 | 29.582 | 311 | 184 | 16 | 8 | 302 | 14 | 305 | 4.15e-28 | 110 |
| Msa0048460 | MtrunA17_Chr3g0131891 | 31.544 | 298 | 165 | 12 | 10 | 293 | 17 | 289 | 6.03e-28 | 110 |
| Msa0048460 | MtrunA17_Chr1g0163071 | 28.223 | 287 | 178 | 8 | 28 | 297 | 2 | 277 | 2.22e-27 | 108 |
| Msa0048460 | MtrunA17_Chr1g0163251 | 27.891 | 294 | 168 | 10 | 12 | 295 | 9 | 268 | 3.24e-25 | 104 |
| Msa0048460 | MtrunA17_Chr3g0103181 | 28.383 | 303 | 171 | 11 | 10 | 303 | 10 | 275 | 4.83e-25 | 101 |
| Msa0048460 | MtrunA17_Chr1g0163261 | 27.891 | 294 | 179 | 9 | 8 | 295 | 5 | 271 | 2.03e-23 | 97.8 |
| Msa0048460 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 186 | 7 | 27 | 293 | 12 | 276 | 3.99e-23 | 99.0 |
| Msa0048460 | MtrunA17_Chr1g0163181 | 28.826 | 281 | 177 | 11 | 21 | 293 | 14 | 279 | 4.12e-23 | 98.6 |
| Msa0048460 | MtrunA17_Chr3g0103151 | 37.908 | 153 | 81 | 6 | 10 | 153 | 10 | 157 | 5.39e-23 | 93.2 |
| Msa0048460 | MtrunA17_Chr8g0390841 | 24.658 | 292 | 205 | 6 | 10 | 295 | 37 | 319 | 8.23e-23 | 98.6 |
| Msa0048460 | MtrunA17_Chr7g0233561 | 26.403 | 303 | 184 | 10 | 10 | 293 | 16 | 298 | 3.78e-22 | 94.7 |
| Msa0048460 | MtrunA17_Chr7g0233571 | 42.991 | 107 | 55 | 2 | 10 | 111 | 8 | 113 | 2.41e-21 | 90.5 |
| Msa0048460 | MtrunA17_Chr1g0163201 | 27.018 | 285 | 159 | 9 | 27 | 293 | 18 | 271 | 4.30e-21 | 92.8 |
| Msa0048460 | MtrunA17_Chr6g0467361 | 52.055 | 73 | 35 | 0 | 228 | 300 | 7 | 79 | 6.82e-20 | 82.8 |
| Msa0048460 | MtrunA17_Chr1g0163231 | 26.384 | 307 | 174 | 10 | 1 | 295 | 1 | 267 | 8.51e-20 | 87.8 |
| Msa0048460 | MtrunA17_Chr7g0233521 | 28.522 | 291 | 146 | 12 | 28 | 296 | 2 | 252 | 8.84e-20 | 87.4 |
| Msa0048460 | MtrunA17_Chr7g0233541 | 25.175 | 286 | 179 | 9 | 28 | 296 | 2 | 269 | 9.55e-20 | 87.4 |
| Msa0048460 | MtrunA17_Chr1g0163101 | 32.941 | 170 | 86 | 7 | 9 | 163 | 14 | 170 | 1.71e-19 | 84.3 |
| Msa0048460 | MtrunA17_Chr1g0154161 | 26.246 | 301 | 172 | 10 | 10 | 293 | 28 | 295 | 7.18e-19 | 85.5 |
| Msa0048460 | MtrunA17_Chr1g0171611 | 25.817 | 306 | 169 | 9 | 1 | 297 | 1 | 257 | 4.24e-18 | 82.8 |
| Msa0048460 | MtrunA17_Chr5g0419201 | 31.915 | 188 | 102 | 7 | 1 | 169 | 1 | 181 | 1.22e-17 | 79.3 |
| Msa0048460 | MtrunA17_Chr3g0103171 | 27.083 | 288 | 168 | 10 | 27 | 303 | 5 | 261 | 1.36e-17 | 80.9 |
| Msa0048460 | MtrunA17_Chr3g0103191 | 26.432 | 227 | 134 | 6 | 10 | 230 | 10 | 209 | 1.35e-16 | 77.8 |
| Msa0048460 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 82 | 7 | 28 | 177 | 2 | 150 | 1.48e-16 | 75.9 |
| Msa0048460 | MtrunA17_Chr7g0233531 | 24.828 | 290 | 158 | 9 | 28 | 296 | 2 | 252 | 2.14e-16 | 77.8 |
| Msa0048460 | MtrunA17_Chr1g0163191 | 37.405 | 131 | 62 | 6 | 1 | 122 | 2 | 121 | 9.63e-16 | 73.6 |
| Msa0048460 | MtrunA17_Chr1g0162161 | 36.111 | 144 | 74 | 8 | 28 | 161 | 4 | 139 | 1.06e-15 | 73.6 |
| Msa0048460 | MtrunA17_Chr1g0163081 | 34.711 | 121 | 63 | 5 | 28 | 136 | 6 | 122 | 2.67e-15 | 72.0 |
| Msa0048460 | MtrunA17_Chr1g0154191 | 23.780 | 328 | 201 | 9 | 10 | 293 | 20 | 342 | 1.08e-14 | 73.9 |
| Msa0048460 | MtrunA17_Chr1g0163121 | 32.558 | 129 | 71 | 6 | 26 | 142 | 9 | 133 | 2.99e-14 | 68.9 |
| Msa0048460 | MtrunA17_Chr4g0033961 | 36.842 | 114 | 69 | 2 | 12 | 125 | 6 | 116 | 4.44e-14 | 72.4 |
| Msa0048460 | MtrunA17_Chr3g0077411 | 24.026 | 308 | 164 | 11 | 1 | 293 | 251 | 503 | 6.76e-14 | 72.0 |
| Msa0048460 | MtrunA17_Chr3g0077411 | 30.345 | 145 | 90 | 4 | 11 | 148 | 24 | 164 | 5.45e-11 | 63.2 |
| Msa0048460 | MtrunA17_Chr1g0154151 | 25.899 | 278 | 166 | 10 | 44 | 293 | 36 | 301 | 1.67e-13 | 70.1 |
| Msa0048460 | MtrunA17_Chr1g0154131 | 25.817 | 306 | 165 | 11 | 23 | 300 | 193 | 464 | 7.03e-13 | 68.9 |
| Msa0048460 | MtrunA17_Chr1g0163241 | 32.394 | 142 | 75 | 6 | 15 | 147 | 14 | 143 | 1.37e-12 | 65.1 |
| Msa0048460 | MtrunA17_Chr3g0077461 | 31.013 | 158 | 95 | 4 | 11 | 155 | 236 | 392 | 1.49e-12 | 67.8 |
| Msa0048460 | MtrunA17_Chr1g0163141 | 29.508 | 183 | 105 | 8 | 26 | 188 | 9 | 187 | 1.08e-11 | 62.8 |
| Msa0048460 | MtrunA17_Chr1g0154171 | 25.078 | 319 | 191 | 11 | 13 | 293 | 23 | 331 | 1.11e-11 | 64.7 |
| Msa0048460 | MtrunA17_Chr5g0429931 | 24.648 | 284 | 146 | 10 | 27 | 300 | 10 | 235 | 1.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048460 | AT3G18990.1 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.12e-20 | 91.3 |
| Msa0048460 | AT3G18990.2 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.36e-20 | 91.3 |
| Msa0048460 | AT1G49475.1 | 37.097 | 124 | 70 | 4 | 5 | 122 | 26 | 147 | 3.43e-14 | 70.5 |
| Msa0048460 | AT3G18960.1 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.31e-13 | 68.9 |
| Msa0048460 | AT3G18960.2 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.40e-13 | 68.6 |
| Msa0048460 | AT4G01580.1 | 27.083 | 144 | 99 | 3 | 2 | 140 | 19 | 161 | 8.39e-13 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 1_2:+748342 | Msa0048460:CDS |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 1_2:+748295 | Msa0048460:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 1_2:-747141 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 1_2:+748384 | Msa0048460:CDS |
| TTACTGAAAAGAAAGTTTAT+TGG | 0.274412 | 1_2:+746556 | Msa0048460:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 1_2:-748237 | None:intergenic |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 1_2:+746644 | Msa0048460:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 1_2:-746834 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.299312 | 1_2:+746557 | Msa0048460:CDS |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 1_2:-746531 | None:intergenic |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 1_2:-748389 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 1_2:+746583 | Msa0048460:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 1_2:+746262 | Msa0048460:CDS |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 1_2:-746489 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 1_2:+748343 | Msa0048460:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 1_2:-748339 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 1_2:-746738 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 1_2:+748296 | Msa0048460:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 1_2:+747179 | Msa0048460:CDS |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 1_2:-746926 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 1_2:-746737 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 1_2:+747164 | Msa0048460:CDS |
| ATCCAATTAGTAGTCTCAAA+AGG | 0.494683 | 1_2:+749197 | Msa0048460:intron |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 1_2:+747155 | Msa0048460:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 1_2:+746254 | Msa0048460:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 1_2:+746209 | Msa0048460:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 1_2:-746490 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 1_2:+746785 | Msa0048460:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 1_2:+748247 | Msa0048460:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 1_2:+748255 | Msa0048460:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 1_2:+748344 | Msa0048460:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 1_2:-748380 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 1_2:-747140 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 1_2:+746498 | Msa0048460:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 1_2:+748251 | Msa0048460:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 1_2:-746530 | None:intergenic |
| GAGGATCCTTCATCTTCGCG+AGG | 0.649374 | 1_2:+746804 | Msa0048460:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 1_2:+748345 | Msa0048460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | + | chr1_2:747782-747801 | Msa0048460:intron | 10.0% |
| !! | AATAAAAAAAATATTCACTA+CGG | + | chr1_2:747864-747883 | Msa0048460:intron | 10.0% |
| !!! | TAAAAAAAATGTTCTAAAAA+AGG | - | chr1_2:748556-748575 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATGAATAAGTA+AGG | + | chr1_2:748958-748977 | Msa0048460:intron | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | + | chr1_2:747034-747053 | Msa0048460:intron | 15.0% |
| !!! | AACATATACTACTTTTTTTT+TGG | + | chr1_2:747203-747222 | Msa0048460:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | - | chr1_2:747269-747288 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | - | chr1_2:747295-747314 | None:intergenic | 15.0% |
| !! | ATAAAAAAAATATTCACTAC+GGG | + | chr1_2:747865-747884 | Msa0048460:intron | 15.0% |
| !! | TAAAATTACCTTCAAAAATA+GGG | - | chr1_2:748498-748517 | None:intergenic | 15.0% |
| !! | ATAAAATTACCTTCAAAAAT+AGG | - | chr1_2:748499-748518 | None:intergenic | 15.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | - | chr1_2:746552-746571 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | + | chr1_2:746556-746575 | Msa0048460:CDS | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | + | chr1_2:746557-746576 | Msa0048460:CDS | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | - | chr1_2:746852-746871 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | + | chr1_2:746935-746954 | Msa0048460:CDS | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | + | chr1_2:746948-746967 | Msa0048460:CDS | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | + | chr1_2:747048-747067 | Msa0048460:intron | 20.0% |
| !!! | TACTTTTTTTTTGGTGAATA+TGG | + | chr1_2:747212-747231 | Msa0048460:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | - | chr1_2:747447-747466 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | - | chr1_2:747702-747721 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | - | chr1_2:747768-747787 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | - | chr1_2:747769-747788 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | + | chr1_2:748154-748173 | Msa0048460:intron | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | - | chr1_2:748158-748177 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | + | chr1_2:748160-748179 | Msa0048460:intron | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | - | chr1_2:748342-748361 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | + | chr1_2:748342-748361 | Msa0048460:CDS | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | + | chr1_2:748343-748362 | Msa0048460:CDS | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | + | chr1_2:748344-748363 | Msa0048460:CDS | 20.0% |
| !! | AATGGTAAAAACAAATATGA+TGG | - | chr1_2:748529-748548 | None:intergenic | 20.0% |
| !!! | ATCATACTTTCTTTTTTTTG+TGG | + | chr1_2:748580-748599 | Msa0048460:intron | 20.0% |
| !! | GATAATGCATAAAATATGTA+AGG | - | chr1_2:748628-748647 | None:intergenic | 20.0% |
| !! | ACTAAACTACTTGAAAAAAA+GGG | - | chr1_2:748923-748942 | None:intergenic | 20.0% |
| !! | ACAATTCAATCTATATAGTT+TGG | - | chr1_2:749055-749074 | None:intergenic | 20.0% |
| !! | AGTTATTCACTTATTGATAT+AGG | + | chr1_2:749134-749153 | Msa0048460:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | - | chr1_2:746238-746257 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | + | chr1_2:746395-746414 | Msa0048460:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | + | chr1_2:746583-746602 | Msa0048460:CDS | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | - | chr1_2:746713-746732 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | - | chr1_2:746887-746906 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | + | chr1_2:747007-747026 | Msa0048460:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | - | chr1_2:747282-747301 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | + | chr1_2:747445-747464 | Msa0048460:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | - | chr1_2:747719-747738 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | + | chr1_2:747822-747841 | Msa0048460:intron | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | + | chr1_2:747823-747842 | Msa0048460:intron | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | + | chr1_2:747984-748003 | Msa0048460:intron | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | + | chr1_2:747985-748004 | Msa0048460:intron | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | - | chr1_2:748122-748141 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | + | chr1_2:748295-748314 | Msa0048460:CDS | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | + | chr1_2:748296-748315 | Msa0048460:CDS | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | + | chr1_2:748345-748364 | Msa0048460:CDS | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | - | chr1_2:748392-748411 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | + | chr1_2:748461-748480 | Msa0048460:intron | 25.0% |
| !!! | TGTTCTAAAAAAGGTAGAAA+TGG | - | chr1_2:748547-748566 | None:intergenic | 25.0% |
| !!! | ATACTTTCTTTTTTTTGTGG+TGG | + | chr1_2:748583-748602 | Msa0048460:intron | 25.0% |
| ! | CACTAAACTACTTGAAAAAA+AGG | - | chr1_2:748924-748943 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCAAGTAGTTTAG+TGG | + | chr1_2:748922-748941 | Msa0048460:intron | 25.0% |
| ! | ATATAACAATGCATTGTCTA+GGG | + | chr1_2:749009-749028 | Msa0048460:intron | 25.0% |
| !!! | AGATTGAATTGTTTTGAACA+AGG | + | chr1_2:749063-749082 | Msa0048460:intron | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr1_2:746594-746613 | Msa0048460:CDS | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | - | chr1_2:746740-746759 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | - | chr1_2:746741-746760 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | + | chr1_2:746785-746804 | Msa0048460:CDS | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | + | chr1_2:746952-746971 | Msa0048460:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | - | chr1_2:747028-747047 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | + | chr1_2:747179-747198 | Msa0048460:CDS | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | + | chr1_2:747322-747341 | Msa0048460:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | + | chr1_2:747457-747476 | Msa0048460:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | - | chr1_2:747472-747491 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | - | chr1_2:747623-747642 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | - | chr1_2:747687-747706 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | - | chr1_2:747688-747707 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | - | chr1_2:747820-747839 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | + | chr1_2:747870-747889 | Msa0048460:intron | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | + | chr1_2:747871-747890 | Msa0048460:intron | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | + | chr1_2:747973-747992 | Msa0048460:intron | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | + | chr1_2:747989-748008 | Msa0048460:intron | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | + | chr1_2:748209-748228 | Msa0048460:intron | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | - | chr1_2:748225-748244 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | + | chr1_2:748235-748254 | Msa0048460:CDS | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | - | chr1_2:748383-748402 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | + | chr1_2:748384-748403 | Msa0048460:CDS | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | + | chr1_2:748403-748422 | Msa0048460:CDS | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | - | chr1_2:748475-748494 | None:intergenic | 30.0% |
| !!! | TGATCATTCCCTATTTTTGA+AGG | + | chr1_2:748487-748506 | Msa0048460:intron | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | - | chr1_2:748623-748642 | None:intergenic | 30.0% | |
| TTGCATGTATTGTGTTTGTA+TGG | - | chr1_2:748696-748715 | None:intergenic | 30.0% | |
| AGTAAAATGGTAAAGGCAAA+AGG | - | chr1_2:748768-748787 | None:intergenic | 30.0% | |
| ! | TTTACCATTTTACTGCTAGA+GGG | + | chr1_2:748774-748793 | Msa0048460:intron | 30.0% |
| GAATGATATTGATACTTGCA+TGG | + | chr1_2:748803-748822 | Msa0048460:intron | 30.0% | |
| GTTGTTACAATTTCAAGAAG+CGG | + | chr1_2:748849-748868 | Msa0048460:intron | 30.0% | |
| GACAATGCATTGTTATATGT+AGG | - | chr1_2:749007-749026 | None:intergenic | 30.0% | |
| CATATAACAATGCATTGTCT+AGG | + | chr1_2:749008-749027 | Msa0048460:intron | 30.0% | |
| ATCCAATTAGTAGTCTCAAA+AGG | + | chr1_2:749197-749216 | Msa0048460:intron | 30.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | - | chr1_2:746267-746286 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr1_2:746268-746287 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | - | chr1_2:746493-746512 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | + | chr1_2:746493-746512 | Msa0048460:CDS | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr1_2:746598-746617 | Msa0048460:CDS | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | + | chr1_2:746644-746663 | Msa0048460:CDS | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | - | chr1_2:746929-746948 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | + | chr1_2:747104-747123 | Msa0048460:CDS | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | - | chr1_2:747143-747162 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | + | chr1_2:747164-747183 | Msa0048460:CDS | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | + | chr1_2:747464-747483 | Msa0048460:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | + | chr1_2:747558-747577 | Msa0048460:intron | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | - | chr1_2:747624-747643 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | - | chr1_2:747748-747767 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | - | chr1_2:747749-747768 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | + | chr1_2:747872-747891 | Msa0048460:intron | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | - | chr1_2:748048-748067 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | - | chr1_2:748240-748259 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | + | chr1_2:748349-748368 | Msa0048460:CDS | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | - | chr1_2:748621-748640 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | - | chr1_2:748622-748641 | None:intergenic | 35.0% | |
| ! | TGAGTTTAACTTAGTTGGCA+AGG | - | chr1_2:748650-748669 | None:intergenic | 35.0% |
| ! | CATCGTGAGTTTAACTTAGT+TGG | - | chr1_2:748655-748674 | None:intergenic | 35.0% |
| CTCTAGCAGTAAAATGGTAA+AGG | - | chr1_2:748775-748794 | None:intergenic | 35.0% | |
| ! | CTTTACCATTTTACTGCTAG+AGG | + | chr1_2:748773-748792 | Msa0048460:intron | 35.0% |
| ! | ATGAATAAGTAAGGTGTCTG+AGG | + | chr1_2:748967-748986 | Msa0048460:intron | 35.0% |
| !!! | AGCCTTTTGAGACTACTAAT+TGG | - | chr1_2:749202-749221 | None:intergenic | 35.0% |
| TCTTCTCATGAACCTGATCA+TGG | + | chr1_2:746209-746228 | Msa0048460:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | - | chr1_2:746224-746243 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | + | chr1_2:746254-746273 | Msa0048460:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | + | chr1_2:746262-746281 | Msa0048460:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | - | chr1_2:746492-746511 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | + | chr1_2:746498-746517 | Msa0048460:CDS | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | - | chr1_2:746533-746552 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | - | chr1_2:746534-746553 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | + | chr1_2:746699-746718 | Msa0048460:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | - | chr1_2:746837-746856 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | - | chr1_2:746911-746930 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | - | chr1_2:747144-747163 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | + | chr1_2:747155-747174 | Msa0048460:CDS | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | - | chr1_2:747384-747403 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | - | chr1_2:747388-747407 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | - | chr1_2:747504-747523 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | - | chr1_2:747505-747524 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | + | chr1_2:747604-747623 | Msa0048460:intron | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | - | chr1_2:747678-747697 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | + | chr1_2:747946-747965 | Msa0048460:intron | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | - | chr1_2:748035-748054 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | - | chr1_2:748036-748055 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | + | chr1_2:748039-748058 | Msa0048460:intron | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | - | chr1_2:748043-748062 | None:intergenic | 40.0% | |
| TGATACTTGCATGGTCAATG+AGG | + | chr1_2:748812-748831 | Msa0048460:intron | 40.0% | |
| TTGCATGGTCAATGAGGAAA+AGG | + | chr1_2:748818-748837 | Msa0048460:intron | 40.0% | |
| ATGGTCAATGAGGAAAAGGT+TGG | + | chr1_2:748822-748841 | Msa0048460:intron | 40.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | - | chr1_2:747361-747380 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | - | chr1_2:747385-747404 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | - | chr1_2:747389-747408 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | + | chr1_2:747402-747421 | Msa0048460:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | + | chr1_2:747403-747422 | Msa0048460:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | - | chr1_2:747407-747426 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | - | chr1_2:747499-747518 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | - | chr1_2:747503-747522 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | - | chr1_2:747527-747546 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | - | chr1_2:747590-747609 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | + | chr1_2:747945-747964 | Msa0048460:intron | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | - | chr1_2:747951-747970 | None:intergenic | 45.0% | |
| !!! | TCTTTTTTTTGTGGTGGCCG+AGG | + | chr1_2:748589-748608 | Msa0048460:intron | 45.0% |
| CCAACCCTCTAGCAGTAAAA+TGG | - | chr1_2:748781-748800 | None:intergenic | 45.0% | |
| ! | CCATTTTACTGCTAGAGGGT+TGG | + | chr1_2:748778-748797 | Msa0048460:intron | 45.0% |
| !!! | TTTTTTAAATATATTTCAAA+TGG | + | chr1_2:748720-748739 | Msa0048460:intron | 5.0% |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | - | chr1_2:746813-746832 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | - | chr1_2:747362-747381 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | - | chr1_2:747379-747398 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | - | chr1_2:747408-747427 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | - | chr1_2:747492-747511 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | + | chr1_2:747507-747526 | Msa0048460:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | - | chr1_2:747528-747547 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | + | chr1_2:747610-747629 | Msa0048460:intron | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | - | chr1_2:748030-748049 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | + | chr1_2:748247-748266 | Msa0048460:CDS | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | + | chr1_2:748251-748270 | Msa0048460:CDS | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | + | chr1_2:748255-748274 | Msa0048460:CDS | 50.0% | |
| TCAAGAAGCGGCAGCTACAT+TGG | + | chr1_2:748861-748880 | Msa0048460:intron | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | + | chr1_2:746324-746343 | Msa0048460:intron | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | - | chr1_2:746328-746347 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | + | chr1_2:746325-746344 | Msa0048460:intron | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | - | chr1_2:746329-746348 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | + | chr1_2:746804-746823 | Msa0048460:CDS | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | - | chr1_2:747374-747393 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | - | chr1_2:747375-747394 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | - | chr1_2:747517-747536 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | + | chr1_2:747571-747590 | Msa0048460:intron | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | + | chr1_2:747882-747901 | Msa0048460:intron | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | + | chr1_2:747883-747902 | Msa0048460:intron | 55.0% | |
| GAATCTCACCCCGTCCCTAT+GGG | - | chr1_2:747918-747937 | None:intergenic | 55.0% | |
| TGAATCTCACCCCGTCCCTA+TGG | - | chr1_2:747919-747938 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | + | chr1_2:747519-747538 | Msa0048460:intron | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | - | chr1_2:747574-747593 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | - | chr1_2:747578-747597 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | + | chr1_2:747900-747919 | Msa0048460:intron | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | + | chr1_2:747901-747920 | Msa0048460:intron | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | + | chr1_2:747905-747924 | Msa0048460:intron | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | + | chr1_2:747906-747925 | Msa0048460:intron | 60.0% | |
| TCACCCCGTCCCTATGGGTT+CGG | - | chr1_2:747913-747932 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | - | chr1_2:748027-748046 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr1_2:748609-748628 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | + | chr1_2:747907-747926 | Msa0048460:intron | 65.0% | |
| CACCCCGTCCCTATGGGTTC+GGG | - | chr1_2:747912-747931 | None:intergenic | 65.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr1_2:748601-748620 | Msa0048460:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 746206 | 749233 | 746206 | ID=Msa0048460;Name=Msa0048460 |
| chr1_2 | mRNA | 746206 | 749233 | 746206 | ID=Msa0048460-mRNA-1;Parent=Msa0048460;Name=Msa0048460-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.83|0.6|0.5|6|0|310 |
| chr1_2 | exon | 746206 | 746283 | 746206 | ID=Msa0048460-mRNA-1:exon:113;Parent=Msa0048460-mRNA-1 |
| chr1_2 | exon | 746483 | 746711 | 746483 | ID=Msa0048460-mRNA-1:exon:114;Parent=Msa0048460-mRNA-1 |
| chr1_2 | exon | 746727 | 746969 | 746727 | ID=Msa0048460-mRNA-1:exon:115;Parent=Msa0048460-mRNA-1 |
| chr1_2 | exon | 747070 | 747200 | 747070 | ID=Msa0048460-mRNA-1:exon:116;Parent=Msa0048460-mRNA-1 |
| chr1_2 | exon | 748231 | 748458 | 748231 | ID=Msa0048460-mRNA-1:exon:117;Parent=Msa0048460-mRNA-1 |
| chr1_2 | exon | 749210 | 749233 | 749210 | ID=Msa0048460-mRNA-1:exon:118;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 746206 | 746283 | 746206 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 746483 | 746711 | 746483 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 746727 | 746969 | 746727 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 747070 | 747200 | 747070 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 748231 | 748458 | 748231 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| chr1_2 | CDS | 749210 | 749233 | 749210 | ID=Msa0048460-mRNA-1:cds;Parent=Msa0048460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
