Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048480 | XP_024636868.1 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 3.10e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048480 | sp|Q8L3W1|VRN1_ARATH | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.10e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048480 | A0A396IHE6 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 1.48e-133 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0048480 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048480 | MtrunA17_Chr4g0067431 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 2.85e-137 | 391 |
| Msa0048480 | MtrunA17_Chr1g0163221 | 56.958 | 309 | 104 | 8 | 1 | 303 | 1 | 286 | 8.96e-98 | 292 |
| Msa0048480 | MtrunA17_Chr6g0467351 | 62.712 | 236 | 70 | 4 | 1 | 228 | 1 | 226 | 3.09e-93 | 276 |
| Msa0048480 | MtrunA17_Chr1g0163061 | 55.094 | 265 | 69 | 3 | 1 | 215 | 1 | 265 | 2.89e-71 | 221 |
| Msa0048480 | MtrunA17_Chr1g0163131 | 29.582 | 311 | 184 | 16 | 8 | 302 | 14 | 305 | 4.15e-28 | 110 |
| Msa0048480 | MtrunA17_Chr3g0131891 | 31.544 | 298 | 165 | 12 | 10 | 293 | 17 | 289 | 6.03e-28 | 110 |
| Msa0048480 | MtrunA17_Chr1g0163071 | 28.223 | 287 | 178 | 8 | 28 | 297 | 2 | 277 | 2.22e-27 | 108 |
| Msa0048480 | MtrunA17_Chr1g0163251 | 27.891 | 294 | 168 | 10 | 12 | 295 | 9 | 268 | 3.24e-25 | 104 |
| Msa0048480 | MtrunA17_Chr3g0103181 | 28.383 | 303 | 171 | 11 | 10 | 303 | 10 | 275 | 4.83e-25 | 101 |
| Msa0048480 | MtrunA17_Chr1g0163261 | 27.891 | 294 | 179 | 9 | 8 | 295 | 5 | 271 | 2.03e-23 | 97.8 |
| Msa0048480 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 186 | 7 | 27 | 293 | 12 | 276 | 3.99e-23 | 99.0 |
| Msa0048480 | MtrunA17_Chr1g0163181 | 28.826 | 281 | 177 | 11 | 21 | 293 | 14 | 279 | 4.12e-23 | 98.6 |
| Msa0048480 | MtrunA17_Chr3g0103151 | 37.908 | 153 | 81 | 6 | 10 | 153 | 10 | 157 | 5.39e-23 | 93.2 |
| Msa0048480 | MtrunA17_Chr8g0390841 | 24.658 | 292 | 205 | 6 | 10 | 295 | 37 | 319 | 8.23e-23 | 98.6 |
| Msa0048480 | MtrunA17_Chr7g0233561 | 26.403 | 303 | 184 | 10 | 10 | 293 | 16 | 298 | 3.78e-22 | 94.7 |
| Msa0048480 | MtrunA17_Chr7g0233571 | 42.991 | 107 | 55 | 2 | 10 | 111 | 8 | 113 | 2.41e-21 | 90.5 |
| Msa0048480 | MtrunA17_Chr1g0163201 | 27.018 | 285 | 159 | 9 | 27 | 293 | 18 | 271 | 4.30e-21 | 92.8 |
| Msa0048480 | MtrunA17_Chr6g0467361 | 52.055 | 73 | 35 | 0 | 228 | 300 | 7 | 79 | 6.82e-20 | 82.8 |
| Msa0048480 | MtrunA17_Chr1g0163231 | 26.384 | 307 | 174 | 10 | 1 | 295 | 1 | 267 | 8.51e-20 | 87.8 |
| Msa0048480 | MtrunA17_Chr7g0233521 | 28.522 | 291 | 146 | 12 | 28 | 296 | 2 | 252 | 8.84e-20 | 87.4 |
| Msa0048480 | MtrunA17_Chr7g0233541 | 25.175 | 286 | 179 | 9 | 28 | 296 | 2 | 269 | 9.55e-20 | 87.4 |
| Msa0048480 | MtrunA17_Chr1g0163101 | 32.941 | 170 | 86 | 7 | 9 | 163 | 14 | 170 | 1.71e-19 | 84.3 |
| Msa0048480 | MtrunA17_Chr1g0154161 | 26.246 | 301 | 172 | 10 | 10 | 293 | 28 | 295 | 7.18e-19 | 85.5 |
| Msa0048480 | MtrunA17_Chr1g0171611 | 25.817 | 306 | 169 | 9 | 1 | 297 | 1 | 257 | 4.24e-18 | 82.8 |
| Msa0048480 | MtrunA17_Chr5g0419201 | 31.915 | 188 | 102 | 7 | 1 | 169 | 1 | 181 | 1.22e-17 | 79.3 |
| Msa0048480 | MtrunA17_Chr3g0103171 | 27.083 | 288 | 168 | 10 | 27 | 303 | 5 | 261 | 1.36e-17 | 80.9 |
| Msa0048480 | MtrunA17_Chr3g0103191 | 26.432 | 227 | 134 | 6 | 10 | 230 | 10 | 209 | 1.35e-16 | 77.8 |
| Msa0048480 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 82 | 7 | 28 | 177 | 2 | 150 | 1.48e-16 | 75.9 |
| Msa0048480 | MtrunA17_Chr7g0233531 | 24.828 | 290 | 158 | 9 | 28 | 296 | 2 | 252 | 2.14e-16 | 77.8 |
| Msa0048480 | MtrunA17_Chr1g0163191 | 37.405 | 131 | 62 | 6 | 1 | 122 | 2 | 121 | 9.63e-16 | 73.6 |
| Msa0048480 | MtrunA17_Chr1g0162161 | 36.111 | 144 | 74 | 8 | 28 | 161 | 4 | 139 | 1.06e-15 | 73.6 |
| Msa0048480 | MtrunA17_Chr1g0163081 | 34.711 | 121 | 63 | 5 | 28 | 136 | 6 | 122 | 2.67e-15 | 72.0 |
| Msa0048480 | MtrunA17_Chr1g0154191 | 23.780 | 328 | 201 | 9 | 10 | 293 | 20 | 342 | 1.08e-14 | 73.9 |
| Msa0048480 | MtrunA17_Chr1g0163121 | 32.558 | 129 | 71 | 6 | 26 | 142 | 9 | 133 | 2.99e-14 | 68.9 |
| Msa0048480 | MtrunA17_Chr4g0033961 | 36.842 | 114 | 69 | 2 | 12 | 125 | 6 | 116 | 4.44e-14 | 72.4 |
| Msa0048480 | MtrunA17_Chr3g0077411 | 24.026 | 308 | 164 | 11 | 1 | 293 | 251 | 503 | 6.76e-14 | 72.0 |
| Msa0048480 | MtrunA17_Chr3g0077411 | 30.345 | 145 | 90 | 4 | 11 | 148 | 24 | 164 | 5.45e-11 | 63.2 |
| Msa0048480 | MtrunA17_Chr1g0154151 | 25.899 | 278 | 166 | 10 | 44 | 293 | 36 | 301 | 1.67e-13 | 70.1 |
| Msa0048480 | MtrunA17_Chr1g0154131 | 25.817 | 306 | 165 | 11 | 23 | 300 | 193 | 464 | 7.03e-13 | 68.9 |
| Msa0048480 | MtrunA17_Chr1g0163241 | 32.394 | 142 | 75 | 6 | 15 | 147 | 14 | 143 | 1.37e-12 | 65.1 |
| Msa0048480 | MtrunA17_Chr3g0077461 | 31.013 | 158 | 95 | 4 | 11 | 155 | 236 | 392 | 1.49e-12 | 67.8 |
| Msa0048480 | MtrunA17_Chr1g0163141 | 29.508 | 183 | 105 | 8 | 26 | 188 | 9 | 187 | 1.08e-11 | 62.8 |
| Msa0048480 | MtrunA17_Chr1g0154171 | 25.078 | 319 | 191 | 11 | 13 | 293 | 23 | 331 | 1.11e-11 | 64.7 |
| Msa0048480 | MtrunA17_Chr5g0429931 | 24.648 | 284 | 146 | 10 | 27 | 300 | 10 | 235 | 1.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048480 | AT3G18990.1 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.12e-20 | 91.3 |
| Msa0048480 | AT3G18990.2 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.36e-20 | 91.3 |
| Msa0048480 | AT1G49475.1 | 37.097 | 124 | 70 | 4 | 5 | 122 | 26 | 147 | 3.43e-14 | 70.5 |
| Msa0048480 | AT3G18960.1 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.31e-13 | 68.9 |
| Msa0048480 | AT3G18960.2 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.40e-13 | 68.6 |
| Msa0048480 | AT4G01580.1 | 27.083 | 144 | 99 | 3 | 2 | 140 | 19 | 161 | 8.39e-13 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 1_2:+784769 | Msa0048480:CDS |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 1_2:+784722 | Msa0048480:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 1_2:-783565 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 1_2:+784811 | Msa0048480:CDS |
| TTACTGAAAAGAAAGTTTAT+TGG | 0.274412 | 1_2:+782980 | Msa0048480:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 1_2:-784664 | None:intergenic |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 1_2:+783068 | Msa0048480:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 1_2:-783258 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.299312 | 1_2:+782981 | Msa0048480:CDS |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 1_2:-782955 | None:intergenic |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 1_2:-784816 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 1_2:+783007 | Msa0048480:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 1_2:+782686 | Msa0048480:CDS |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 1_2:-782913 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 1_2:+784770 | Msa0048480:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 1_2:-784766 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 1_2:-783162 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 1_2:+784723 | Msa0048480:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 1_2:+783603 | Msa0048480:CDS |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 1_2:-783350 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 1_2:-783161 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 1_2:+783588 | Msa0048480:CDS |
| ATCCAATTAGTAGTCTCAAA+AGG | 0.494683 | 1_2:+785624 | Msa0048480:intron |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 1_2:+783579 | Msa0048480:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 1_2:+782678 | Msa0048480:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 1_2:+782633 | Msa0048480:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 1_2:-782914 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 1_2:+783209 | Msa0048480:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 1_2:+784674 | Msa0048480:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 1_2:+784682 | Msa0048480:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 1_2:+784771 | Msa0048480:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 1_2:-784807 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 1_2:-783564 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 1_2:+782922 | Msa0048480:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 1_2:+784678 | Msa0048480:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 1_2:-782954 | None:intergenic |
| GAGGATCCTTCATCTTCGCG+AGG | 0.649374 | 1_2:+783228 | Msa0048480:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 1_2:+784772 | Msa0048480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | + | chr1_2:784206-784225 | Msa0048480:intron | 10.0% |
| !! | ATAAAAAAAAATATTCACTA+CGG | + | chr1_2:784289-784308 | Msa0048480:intron | 10.0% |
| !!! | TAAAAAAAATGTTCTAAAAA+AGG | - | chr1_2:784983-785002 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATGAATAAGTA+AGG | + | chr1_2:785385-785404 | Msa0048480:intron | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | + | chr1_2:783458-783477 | Msa0048480:intron | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | + | chr1_2:783626-783645 | Msa0048480:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | - | chr1_2:783692-783711 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | - | chr1_2:783718-783737 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATATTCACTAC+GGG | + | chr1_2:784290-784309 | Msa0048480:intron | 15.0% |
| !! | TAAAATTACCTTCAAAAATA+GGG | - | chr1_2:784925-784944 | None:intergenic | 15.0% |
| !! | ATAAAATTACCTTCAAAAAT+AGG | - | chr1_2:784926-784945 | None:intergenic | 15.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | - | chr1_2:782976-782995 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | + | chr1_2:782980-782999 | Msa0048480:CDS | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | + | chr1_2:782981-783000 | Msa0048480:CDS | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | - | chr1_2:783276-783295 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | + | chr1_2:783359-783378 | Msa0048480:CDS | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | + | chr1_2:783372-783391 | Msa0048480:CDS | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | + | chr1_2:783472-783491 | Msa0048480:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | - | chr1_2:783870-783889 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | - | chr1_2:784126-784145 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | - | chr1_2:784192-784211 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | - | chr1_2:784193-784212 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | + | chr1_2:784581-784600 | Msa0048480:intron | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | - | chr1_2:784585-784604 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | + | chr1_2:784587-784606 | Msa0048480:intron | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | - | chr1_2:784769-784788 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | + | chr1_2:784769-784788 | Msa0048480:CDS | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | + | chr1_2:784770-784789 | Msa0048480:CDS | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | + | chr1_2:784771-784790 | Msa0048480:CDS | 20.0% |
| !! | AATGGTAAAAACAAATATGA+TGG | - | chr1_2:784956-784975 | None:intergenic | 20.0% |
| !!! | ATCATACTTTCTTTTTTTTG+TGG | + | chr1_2:785007-785026 | Msa0048480:intron | 20.0% |
| !! | GATAATGCATAAAATATGTA+AGG | - | chr1_2:785055-785074 | None:intergenic | 20.0% |
| !! | ACTAAACTACTTGAAAAAAA+GGG | - | chr1_2:785350-785369 | None:intergenic | 20.0% |
| !! | ACAATTCAATCTATATAGTT+TGG | - | chr1_2:785482-785501 | None:intergenic | 20.0% |
| !! | AGTTATTCACTTATTGATAT+AGG | + | chr1_2:785561-785580 | Msa0048480:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | - | chr1_2:782662-782681 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | + | chr1_2:782819-782838 | Msa0048480:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | + | chr1_2:783007-783026 | Msa0048480:CDS | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | - | chr1_2:783137-783156 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | - | chr1_2:783311-783330 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | + | chr1_2:783431-783450 | Msa0048480:intron | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | + | chr1_2:783635-783654 | Msa0048480:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | - | chr1_2:783705-783724 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | + | chr1_2:783868-783887 | Msa0048480:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | - | chr1_2:784143-784162 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | + | chr1_2:784246-784265 | Msa0048480:intron | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | + | chr1_2:784247-784266 | Msa0048480:intron | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | + | chr1_2:784410-784429 | Msa0048480:intron | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | + | chr1_2:784411-784430 | Msa0048480:intron | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | - | chr1_2:784549-784568 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | + | chr1_2:784722-784741 | Msa0048480:CDS | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | + | chr1_2:784723-784742 | Msa0048480:CDS | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | + | chr1_2:784772-784791 | Msa0048480:CDS | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | - | chr1_2:784819-784838 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | + | chr1_2:784888-784907 | Msa0048480:intron | 25.0% |
| !!! | TGTTCTAAAAAAGGTAGAAA+TGG | - | chr1_2:784974-784993 | None:intergenic | 25.0% |
| !!! | ATACTTTCTTTTTTTTGTGG+TGG | + | chr1_2:785010-785029 | Msa0048480:intron | 25.0% |
| ! | CACTAAACTACTTGAAAAAA+AGG | - | chr1_2:785351-785370 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCAAGTAGTTTAG+TGG | + | chr1_2:785349-785368 | Msa0048480:intron | 25.0% |
| ! | ATATAACAATGCATTGTCTA+GGG | + | chr1_2:785436-785455 | Msa0048480:intron | 25.0% |
| !!! | AGATTGAATTGTTTTGAACA+AGG | + | chr1_2:785490-785509 | Msa0048480:intron | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr1_2:783018-783037 | Msa0048480:CDS | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | - | chr1_2:783164-783183 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | - | chr1_2:783165-783184 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | + | chr1_2:783209-783228 | Msa0048480:CDS | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | + | chr1_2:783376-783395 | Msa0048480:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | - | chr1_2:783452-783471 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | + | chr1_2:783603-783622 | Msa0048480:CDS | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | + | chr1_2:783745-783764 | Msa0048480:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | + | chr1_2:783880-783899 | Msa0048480:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | - | chr1_2:783895-783914 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | - | chr1_2:784046-784065 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | - | chr1_2:784111-784130 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | - | chr1_2:784112-784131 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | - | chr1_2:784244-784263 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | + | chr1_2:784295-784314 | Msa0048480:intron | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | + | chr1_2:784296-784315 | Msa0048480:intron | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | + | chr1_2:784399-784418 | Msa0048480:intron | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | + | chr1_2:784415-784434 | Msa0048480:intron | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | + | chr1_2:784636-784655 | Msa0048480:intron | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | - | chr1_2:784652-784671 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | + | chr1_2:784662-784681 | Msa0048480:CDS | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | - | chr1_2:784810-784829 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | + | chr1_2:784811-784830 | Msa0048480:CDS | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | + | chr1_2:784830-784849 | Msa0048480:CDS | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | - | chr1_2:784902-784921 | None:intergenic | 30.0% |
| !!! | TGATCATTCCCTATTTTTGA+AGG | + | chr1_2:784914-784933 | Msa0048480:intron | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | - | chr1_2:785050-785069 | None:intergenic | 30.0% | |
| TTGCATGTATTGTGTTTGTA+TGG | - | chr1_2:785123-785142 | None:intergenic | 30.0% | |
| AGTAAAATGGTAAAGGCAAA+AGG | - | chr1_2:785195-785214 | None:intergenic | 30.0% | |
| ! | TTTACCATTTTACTGCTAGA+GGG | + | chr1_2:785201-785220 | Msa0048480:intron | 30.0% |
| GAATGATATTGATACTTGCA+TGG | + | chr1_2:785230-785249 | Msa0048480:intron | 30.0% | |
| GTTGTTACAATTTCAAGAAG+CGG | + | chr1_2:785276-785295 | Msa0048480:intron | 30.0% | |
| GACAATGCATTGTTATATGT+AGG | - | chr1_2:785434-785453 | None:intergenic | 30.0% | |
| CATATAACAATGCATTGTCT+AGG | + | chr1_2:785435-785454 | Msa0048480:intron | 30.0% | |
| ATCCAATTAGTAGTCTCAAA+AGG | + | chr1_2:785624-785643 | Msa0048480:intron | 30.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | - | chr1_2:782691-782710 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr1_2:782692-782711 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | - | chr1_2:782917-782936 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | + | chr1_2:782917-782936 | Msa0048480:CDS | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr1_2:783022-783041 | Msa0048480:CDS | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | + | chr1_2:783068-783087 | Msa0048480:CDS | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | - | chr1_2:783353-783372 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | + | chr1_2:783528-783547 | Msa0048480:CDS | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | - | chr1_2:783567-783586 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | + | chr1_2:783588-783607 | Msa0048480:CDS | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | + | chr1_2:783887-783906 | Msa0048480:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | + | chr1_2:783981-784000 | Msa0048480:intron | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | - | chr1_2:784047-784066 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | - | chr1_2:784172-784191 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | - | chr1_2:784173-784192 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | + | chr1_2:784297-784316 | Msa0048480:intron | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | - | chr1_2:784474-784493 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | - | chr1_2:784667-784686 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | + | chr1_2:784776-784795 | Msa0048480:CDS | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | - | chr1_2:785048-785067 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | - | chr1_2:785049-785068 | None:intergenic | 35.0% | |
| ! | TGAGTTTAACTTAGTTGGCA+AGG | - | chr1_2:785077-785096 | None:intergenic | 35.0% |
| ! | CATCGTGAGTTTAACTTAGT+TGG | - | chr1_2:785082-785101 | None:intergenic | 35.0% |
| CTCTAGCAGTAAAATGGTAA+AGG | - | chr1_2:785202-785221 | None:intergenic | 35.0% | |
| ! | CTTTACCATTTTACTGCTAG+AGG | + | chr1_2:785200-785219 | Msa0048480:intron | 35.0% |
| ! | ATGAATAAGTAAGGTGTCTG+AGG | + | chr1_2:785394-785413 | Msa0048480:intron | 35.0% |
| !!! | AGCCTTTTGAGACTACTAAT+TGG | - | chr1_2:785629-785648 | None:intergenic | 35.0% |
| TCTTCTCATGAACCTGATCA+TGG | + | chr1_2:782633-782652 | Msa0048480:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | - | chr1_2:782648-782667 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | + | chr1_2:782678-782697 | Msa0048480:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | + | chr1_2:782686-782705 | Msa0048480:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | - | chr1_2:782916-782935 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | + | chr1_2:782922-782941 | Msa0048480:CDS | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | - | chr1_2:782957-782976 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | - | chr1_2:782958-782977 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | + | chr1_2:783123-783142 | Msa0048480:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | - | chr1_2:783261-783280 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | - | chr1_2:783335-783354 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | - | chr1_2:783568-783587 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | + | chr1_2:783579-783598 | Msa0048480:CDS | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | - | chr1_2:783807-783826 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | - | chr1_2:783811-783830 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | - | chr1_2:783927-783946 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | - | chr1_2:783928-783947 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | + | chr1_2:784027-784046 | Msa0048480:intron | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | - | chr1_2:784102-784121 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACAA+GGG | + | chr1_2:784372-784391 | Msa0048480:intron | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | - | chr1_2:784461-784480 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | - | chr1_2:784462-784481 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | + | chr1_2:784465-784484 | Msa0048480:intron | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | - | chr1_2:784469-784488 | None:intergenic | 40.0% | |
| TGATACTTGCATGGTCAATG+AGG | + | chr1_2:785239-785258 | Msa0048480:intron | 40.0% | |
| TTGCATGGTCAATGAGGAAA+AGG | + | chr1_2:785245-785264 | Msa0048480:intron | 40.0% | |
| ATGGTCAATGAGGAAAAGGT+TGG | + | chr1_2:785249-785268 | Msa0048480:intron | 40.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | - | chr1_2:783784-783803 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | - | chr1_2:783808-783827 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | - | chr1_2:783812-783831 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | + | chr1_2:783825-783844 | Msa0048480:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | + | chr1_2:783826-783845 | Msa0048480:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | - | chr1_2:783830-783849 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | - | chr1_2:783922-783941 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | - | chr1_2:783926-783945 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | - | chr1_2:783950-783969 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | - | chr1_2:784013-784032 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACA+AGG | + | chr1_2:784371-784390 | Msa0048480:intron | 45.0% | |
| TACCCTTGTCATACTCAACG+AGG | - | chr1_2:784377-784396 | None:intergenic | 45.0% | |
| !!! | TCTTTTTTTTGTGGTGGCCG+AGG | + | chr1_2:785016-785035 | Msa0048480:intron | 45.0% |
| CCAACCCTCTAGCAGTAAAA+TGG | - | chr1_2:785208-785227 | None:intergenic | 45.0% | |
| ! | CCATTTTACTGCTAGAGGGT+TGG | + | chr1_2:785205-785224 | Msa0048480:intron | 45.0% |
| !!! | TTTTTTAAATATATTTCAAA+TGG | + | chr1_2:785147-785166 | Msa0048480:intron | 5.0% |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | - | chr1_2:783237-783256 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | - | chr1_2:783785-783804 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | - | chr1_2:783802-783821 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | - | chr1_2:783831-783850 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | - | chr1_2:783915-783934 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | + | chr1_2:783930-783949 | Msa0048480:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | - | chr1_2:783951-783970 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | + | chr1_2:784033-784052 | Msa0048480:intron | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | - | chr1_2:784456-784475 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | + | chr1_2:784674-784693 | Msa0048480:CDS | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | + | chr1_2:784678-784697 | Msa0048480:CDS | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | + | chr1_2:784682-784701 | Msa0048480:CDS | 50.0% | |
| TCAAGAAGCGGCAGCTACAT+TGG | + | chr1_2:785288-785307 | Msa0048480:intron | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | + | chr1_2:782748-782767 | Msa0048480:intron | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | - | chr1_2:782752-782771 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | + | chr1_2:782749-782768 | Msa0048480:intron | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | - | chr1_2:782753-782772 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | + | chr1_2:783228-783247 | Msa0048480:CDS | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | - | chr1_2:783797-783816 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | - | chr1_2:783798-783817 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | - | chr1_2:783940-783959 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | + | chr1_2:783994-784013 | Msa0048480:intron | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | + | chr1_2:784307-784326 | Msa0048480:intron | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | + | chr1_2:784308-784327 | Msa0048480:intron | 55.0% | |
| AATCTCACCCCCGTCCCTAT+GGG | - | chr1_2:784343-784362 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | + | chr1_2:783942-783961 | Msa0048480:intron | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | - | chr1_2:783997-784016 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | - | chr1_2:784001-784020 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | + | chr1_2:784325-784344 | Msa0048480:intron | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | + | chr1_2:784326-784345 | Msa0048480:intron | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | + | chr1_2:784330-784349 | Msa0048480:intron | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | + | chr1_2:784331-784350 | Msa0048480:intron | 60.0% | |
| GAATCTCACCCCCGTCCCTA+TGG | - | chr1_2:784344-784363 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | - | chr1_2:784453-784472 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr1_2:785036-785055 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | + | chr1_2:784332-784351 | Msa0048480:intron | 65.0% | |
| ACCCCCGTCCCTATGGGTTC+GGG | - | chr1_2:784337-784356 | None:intergenic | 65.0% | |
| CACCCCCGTCCCTATGGGTT+CGG | - | chr1_2:784338-784357 | None:intergenic | 65.0% | |
| GCCCGAACCCATAGGGACGG+GGG | + | chr1_2:784333-784352 | Msa0048480:intron | 70.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr1_2:785028-785047 | Msa0048480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 782630 | 785660 | 782630 | ID=Msa0048480;Name=Msa0048480 |
| chr1_2 | mRNA | 782630 | 785660 | 782630 | ID=Msa0048480-mRNA-1;Parent=Msa0048480;Name=Msa0048480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.83|0.6|0.5|6|0|310 |
| chr1_2 | exon | 782630 | 782707 | 782630 | ID=Msa0048480-mRNA-1:exon:174;Parent=Msa0048480-mRNA-1 |
| chr1_2 | exon | 782907 | 783135 | 782907 | ID=Msa0048480-mRNA-1:exon:175;Parent=Msa0048480-mRNA-1 |
| chr1_2 | exon | 783151 | 783393 | 783151 | ID=Msa0048480-mRNA-1:exon:176;Parent=Msa0048480-mRNA-1 |
| chr1_2 | exon | 783494 | 783624 | 783494 | ID=Msa0048480-mRNA-1:exon:177;Parent=Msa0048480-mRNA-1 |
| chr1_2 | exon | 784658 | 784885 | 784658 | ID=Msa0048480-mRNA-1:exon:178;Parent=Msa0048480-mRNA-1 |
| chr1_2 | exon | 785637 | 785660 | 785637 | ID=Msa0048480-mRNA-1:exon:179;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 782630 | 782707 | 782630 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 782907 | 783135 | 782907 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 783151 | 783393 | 783151 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 783494 | 783624 | 783494 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 784658 | 784885 | 784658 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| chr1_2 | CDS | 785637 | 785660 | 785637 | ID=Msa0048480-mRNA-1:cds;Parent=Msa0048480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
