Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048560 | XP_003612158.1 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048560 | sp|Q8LL11|WUS_PETHY | 48.797 | 291 | 99 | 12 | 27 | 297 | 42 | 302 | 9.28e-69 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048560 | B7UCW4 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0048560 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048560 | MtrunA17_Chr5g0405351 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Msa0048560 | MtrunA17_Chr4g0043891 | 67.164 | 67 | 21 | 1 | 28 | 94 | 4 | 69 | 2.07e-25 | 102 |
| Msa0048560 | MtrunA17_Chr8g0392991 | 64.000 | 75 | 26 | 1 | 20 | 94 | 84 | 157 | 2.29e-25 | 103 |
| Msa0048560 | MtrunA17_Chr5g0436661 | 59.459 | 74 | 26 | 2 | 32 | 102 | 33 | 105 | 2.48e-24 | 97.4 |
| Msa0048560 | MtrunA17_Chr7g0238431 | 67.692 | 65 | 20 | 1 | 30 | 94 | 6 | 69 | 7.25e-24 | 96.7 |
| Msa0048560 | MtrunA17_Chr4g0031341 | 68.254 | 63 | 19 | 1 | 32 | 94 | 25 | 86 | 2.21e-23 | 96.7 |
| Msa0048560 | MtrunA17_Chr1g0153171 | 55.844 | 77 | 33 | 1 | 18 | 94 | 76 | 151 | 3.87e-22 | 92.8 |
| Msa0048560 | MtrunA17_Chr8g0385441 | 78.723 | 47 | 10 | 0 | 48 | 94 | 97 | 143 | 3.64e-19 | 82.8 |
| Msa0048560 | MtrunA17_Chr3g0125111 | 76.596 | 47 | 11 | 0 | 48 | 94 | 95 | 141 | 5.79e-19 | 82.4 |
| Msa0048560 | MtrunA17_Chr7g0223471 | 48.438 | 64 | 32 | 1 | 32 | 95 | 47 | 109 | 9.85e-15 | 73.9 |
| Msa0048560 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 37 | 1 | 26 | 94 | 49 | 116 | 6.51e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048560 | AT2G17950.1 | 41.699 | 259 | 103 | 9 | 27 | 259 | 33 | 269 | 2.03e-47 | 161 |
| Msa0048560 | AT5G59340.1 | 63.514 | 74 | 26 | 1 | 21 | 94 | 3 | 75 | 2.08e-25 | 102 |
| Msa0048560 | AT3G18010.1 | 70.769 | 65 | 18 | 1 | 30 | 94 | 74 | 137 | 2.39e-25 | 104 |
| Msa0048560 | AT3G11260.1 | 60.000 | 75 | 27 | 2 | 20 | 94 | 14 | 85 | 1.01e-23 | 95.9 |
| Msa0048560 | AT2G28610.1 | 65.152 | 66 | 22 | 1 | 29 | 94 | 5 | 69 | 4.16e-23 | 95.9 |
| Msa0048560 | AT5G05770.1 | 62.319 | 69 | 25 | 1 | 32 | 100 | 29 | 96 | 6.63e-23 | 92.0 |
| Msa0048560 | AT1G46480.2 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 1.62e-22 | 92.8 |
| Msa0048560 | AT1G46480.1 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 8.00e-22 | 92.8 |
| Msa0048560 | AT2G01500.1 | 61.017 | 59 | 22 | 1 | 29 | 87 | 58 | 115 | 9.55e-19 | 84.7 |
| Msa0048560 | AT5G45980.1 | 52.381 | 63 | 29 | 1 | 32 | 94 | 55 | 116 | 1.03e-14 | 73.9 |
| Msa0048560 | AT2G33880.1 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.04e-14 | 73.6 |
| Msa0048560 | AT2G33880.2 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.07e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 1_2:-901602 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 1_2:-901739 | None:intergenic |
| TTCACCAAACAATGGGATTA+TGG | 0.189862 | 1_2:+900474 | Msa0048560:CDS |
| CTGTTATTGCTGCTGCTAAT+TGG | 0.280712 | 1_2:+900761 | Msa0048560:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 1_2:-901922 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 1_2:-901646 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 1_2:-901688 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 1_2:-900586 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 1_2:+901712 | Msa0048560:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 1_2:-900526 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 1_2:+901014 | Msa0048560:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 1_2:+901808 | Msa0048560:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 1_2:-901757 | None:intergenic |
| TCACCAAACAATGGGATTAT+GGG | 0.391816 | 1_2:+900475 | Msa0048560:CDS |
| GCAATAACAGTATTGTTGTT+TGG | 0.399113 | 1_2:-900748 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 1_2:+901008 | Msa0048560:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 1_2:+900613 | Msa0048560:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 1_2:-900787 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 1_2:+901896 | Msa0048560:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 1_2:+900841 | Msa0048560:CDS |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 1_2:+901867 | Msa0048560:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 1_2:-900834 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 1_2:-901756 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 1_2:+900683 | Msa0048560:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 1_2:-900731 | None:intergenic |
| CTGCCCATAATCCCATTGTT+TGG | 0.443872 | 1_2:-900478 | None:intergenic |
| AACAACATTCACCAAACAAT+GGG | 0.452239 | 1_2:+900467 | Msa0048560:CDS |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 1_2:-901013 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 1_2:-900730 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 1_2:+901889 | Msa0048560:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 1_2:+901684 | Msa0048560:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 1_2:+900999 | Msa0048560:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 1_2:-901804 | None:intergenic |
| TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | 1_2:-900448 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 1_2:+900534 | Msa0048560:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 1_2:+900980 | Msa0048560:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 1_2:+901607 | Msa0048560:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 1_2:+900553 | Msa0048560:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 1_2:+900625 | Msa0048560:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 1_2:+901574 | Msa0048560:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 1_2:+901553 | Msa0048560:intron |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 1_2:+901769 | Msa0048560:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 1_2:+901835 | Msa0048560:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 1_2:+901602 | Msa0048560:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 1_2:+901847 | Msa0048560:CDS |
| TGTTGTGGTTGTTGTTGTTG+AGG | 0.541096 | 1_2:-900433 | None:intergenic |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 1_2:-901765 | None:intergenic |
| CAACAACATTCACCAAACAA+TGG | 0.552485 | 1_2:+900466 | Msa0048560:CDS |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 1_2:-901630 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 1_2:-901884 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 1_2:-901766 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 1_2:+900990 | Msa0048560:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 1_2:+901815 | Msa0048560:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 1_2:+901811 | Msa0048560:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 1_2:+901598 | Msa0048560:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 1_2:+901028 | Msa0048560:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 1_2:+900599 | Msa0048560:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 1_2:-901897 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 1_2:-901609 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 1_2:+900497 | Msa0048560:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 1_2:-901610 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 1_2:-901753 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 1_2:-901752 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 1_2:+901700 | Msa0048560:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 1_2:+900500 | Msa0048560:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 1_2:+901772 | Msa0048560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | - | chr1_2:901114-901133 | None:intergenic | 10.0% |
| !! | ATAGATATGAAAATATTAAA+GGG | - | chr1_2:901114-901133 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | - | chr1_2:900881-900900 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | - | chr1_2:901115-901134 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | chr1_2:901250-901269 | Msa0048560:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | chr1_2:901310-901329 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | chr1_2:901434-901453 | Msa0048560:intron | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | - | chr1_2:900881-900900 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | - | chr1_2:901115-901134 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | chr1_2:901250-901269 | Msa0048560:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | chr1_2:901310-901329 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | chr1_2:901434-901453 | Msa0048560:intron | 15.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | - | chr1_2:900837-900856 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | - | chr1_2:900937-900956 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | - | chr1_2:901281-901300 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | + | chr1_2:901808-901827 | Msa0048560:CDS | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | - | chr1_2:900837-900856 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | - | chr1_2:900937-900956 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | - | chr1_2:901281-901300 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | + | chr1_2:901808-901827 | Msa0048560:CDS | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | + | chr1_2:900534-900553 | Msa0048560:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | + | chr1_2:900644-900663 | Msa0048560:CDS | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | + | chr1_2:901534-901553 | Msa0048560:intron | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | - | chr1_2:901807-901826 | None:intergenic | 25.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | + | chr1_2:900534-900553 | Msa0048560:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | + | chr1_2:900644-900663 | Msa0048560:CDS | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | + | chr1_2:901534-901553 | Msa0048560:intron | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | - | chr1_2:901807-901826 | None:intergenic | 25.0% |
| AACAACATTCACCAAACAAT+GGG | + | chr1_2:900467-900486 | Msa0048560:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | chr1_2:900529-900548 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | chr1_2:900553-900572 | Msa0048560:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | - | chr1_2:900751-900770 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | + | chr1_2:900841-900860 | Msa0048560:CDS | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | + | chr1_2:900945-900964 | Msa0048560:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | + | chr1_2:900946-900965 | Msa0048560:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | - | chr1_2:901268-901287 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | chr1_2:901292-901311 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | - | chr1_2:901633-901652 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | - | chr1_2:901649-901668 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | + | chr1_2:901684-901703 | Msa0048560:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | - | chr1_2:901691-901710 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | + | chr1_2:901700-901719 | Msa0048560:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | + | chr1_2:901712-901731 | Msa0048560:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | + | chr1_2:901811-901830 | Msa0048560:CDS | 30.0% | |
| AACAACATTCACCAAACAAT+GGG | + | chr1_2:900467-900486 | Msa0048560:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | chr1_2:900529-900548 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | chr1_2:900553-900572 | Msa0048560:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | - | chr1_2:900751-900770 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | + | chr1_2:900841-900860 | Msa0048560:CDS | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | + | chr1_2:900945-900964 | Msa0048560:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | + | chr1_2:900946-900965 | Msa0048560:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | - | chr1_2:901268-901287 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | chr1_2:901292-901311 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | - | chr1_2:901633-901652 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | - | chr1_2:901649-901668 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | + | chr1_2:901684-901703 | Msa0048560:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | - | chr1_2:901691-901710 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | + | chr1_2:901700-901719 | Msa0048560:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | + | chr1_2:901712-901731 | Msa0048560:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | + | chr1_2:901811-901830 | Msa0048560:CDS | 30.0% | |
| CAACAACATTCACCAAACAA+TGG | + | chr1_2:900466-900485 | Msa0048560:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | chr1_2:900474-900493 | Msa0048560:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | chr1_2:900475-900494 | Msa0048560:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | chr1_2:900625-900644 | Msa0048560:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | + | chr1_2:900683-900702 | Msa0048560:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | chr1_2:900733-900752 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | - | chr1_2:900790-900809 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | - | chr1_2:901016-901035 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | + | chr1_2:901014-901033 | Msa0048560:CDS | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | + | chr1_2:901042-901061 | Msa0048560:CDS | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | - | chr1_2:901046-901065 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | + | chr1_2:901043-901062 | Msa0048560:CDS | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | - | chr1_2:901047-901066 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | - | chr1_2:901146-901165 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | + | chr1_2:901176-901195 | Msa0048560:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | - | chr1_2:901211-901230 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | - | chr1_2:901379-901398 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | + | chr1_2:901815-901834 | Msa0048560:CDS | 35.0% | |
| CAACAACATTCACCAAACAA+TGG | + | chr1_2:900466-900485 | Msa0048560:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | chr1_2:900474-900493 | Msa0048560:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | chr1_2:900475-900494 | Msa0048560:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | chr1_2:900625-900644 | Msa0048560:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | + | chr1_2:900683-900702 | Msa0048560:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | chr1_2:900733-900752 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | - | chr1_2:900790-900809 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | - | chr1_2:901016-901035 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | + | chr1_2:901014-901033 | Msa0048560:CDS | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | + | chr1_2:901042-901061 | Msa0048560:CDS | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | - | chr1_2:901046-901065 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | + | chr1_2:901043-901062 | Msa0048560:CDS | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | - | chr1_2:901047-901066 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | - | chr1_2:901146-901165 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | + | chr1_2:901176-901195 | Msa0048560:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | - | chr1_2:901211-901230 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | - | chr1_2:901379-901398 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | + | chr1_2:901815-901834 | Msa0048560:CDS | 35.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | - | chr1_2:900436-900455 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | + | chr1_2:900599-900618 | Msa0048560:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | chr1_2:900613-900632 | Msa0048560:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | chr1_2:900734-900753 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | + | chr1_2:900761-900780 | Msa0048560:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | + | chr1_2:900980-900999 | Msa0048560:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | - | chr1_2:901376-901395 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | chr1_2:901598-901617 | Msa0048560:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | - | chr1_2:901742-901761 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | chr1_2:901755-901774 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | - | chr1_2:901759-901778 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | - | chr1_2:901760-901779 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | - | chr1_2:901768-901787 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | - | chr1_2:901769-901788 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | + | chr1_2:901769-901788 | Msa0048560:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | + | chr1_2:901847-901866 | Msa0048560:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | + | chr1_2:901889-901908 | Msa0048560:CDS | 40.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | - | chr1_2:900436-900455 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | + | chr1_2:900599-900618 | Msa0048560:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | chr1_2:900613-900632 | Msa0048560:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | chr1_2:900734-900753 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | + | chr1_2:900761-900780 | Msa0048560:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | + | chr1_2:900980-900999 | Msa0048560:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | - | chr1_2:901376-901395 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | chr1_2:901598-901617 | Msa0048560:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | - | chr1_2:901742-901761 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | chr1_2:901755-901774 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | - | chr1_2:901759-901778 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | - | chr1_2:901760-901779 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | - | chr1_2:901768-901787 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | - | chr1_2:901769-901788 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | + | chr1_2:901769-901788 | Msa0048560:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | + | chr1_2:901847-901866 | Msa0048560:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | + | chr1_2:901889-901908 | Msa0048560:CDS | 40.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | chr1_2:900481-900500 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | + | chr1_2:900497-900516 | Msa0048560:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | + | chr1_2:900500-900519 | Msa0048560:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | - | chr1_2:900589-900608 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | + | chr1_2:900990-901009 | Msa0048560:CDS | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | + | chr1_2:900999-901018 | Msa0048560:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | + | chr1_2:901008-901027 | Msa0048560:CDS | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | + | chr1_2:901028-901047 | Msa0048560:CDS | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | - | chr1_2:901186-901205 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | - | chr1_2:901193-901212 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | chr1_2:901553-901572 | Msa0048560:intron | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | + | chr1_2:901574-901593 | Msa0048560:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | - | chr1_2:901605-901624 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | chr1_2:901602-901621 | Msa0048560:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | chr1_2:901607-901626 | Msa0048560:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | chr1_2:901756-901775 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | + | chr1_2:901772-901791 | Msa0048560:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | + | chr1_2:901835-901854 | Msa0048560:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | + | chr1_2:901867-901886 | Msa0048560:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | - | chr1_2:901887-901906 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | - | chr1_2:901900-901919 | None:intergenic | 45.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | chr1_2:900481-900500 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | + | chr1_2:900497-900516 | Msa0048560:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | + | chr1_2:900500-900519 | Msa0048560:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | - | chr1_2:900589-900608 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | + | chr1_2:900990-901009 | Msa0048560:CDS | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | + | chr1_2:900999-901018 | Msa0048560:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | + | chr1_2:901008-901027 | Msa0048560:CDS | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | + | chr1_2:901028-901047 | Msa0048560:CDS | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | - | chr1_2:901186-901205 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | - | chr1_2:901193-901212 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | chr1_2:901553-901572 | Msa0048560:intron | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | + | chr1_2:901574-901593 | Msa0048560:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | - | chr1_2:901605-901624 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | chr1_2:901602-901621 | Msa0048560:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | chr1_2:901607-901626 | Msa0048560:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | chr1_2:901756-901775 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | + | chr1_2:901772-901791 | Msa0048560:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | + | chr1_2:901835-901854 | Msa0048560:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | + | chr1_2:901867-901886 | Msa0048560:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | - | chr1_2:901887-901906 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | - | chr1_2:901900-901919 | None:intergenic | 45.0% | |
| !! | AACTTAAATTAAAATTAAAA+TGG | - | chr1_2:901511-901530 | None:intergenic | 5.0% |
| !! | AACTTAAATTAAAATTAAAA+TGG | - | chr1_2:901511-901530 | None:intergenic | 5.0% |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | chr1_2:900451-900470 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | - | chr1_2:901612-901631 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | - | chr1_2:901613-901632 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | + | chr1_2:901896-901915 | Msa0048560:CDS | 50.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | chr1_2:900451-900470 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | - | chr1_2:901612-901631 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | - | chr1_2:901613-901632 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | + | chr1_2:901896-901915 | Msa0048560:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 900424 | 901939 | 900424 | ID=Msa0048560;Name=Msa0048560 |
| chr1_2 | mRNA | 900424 | 901939 | 900424 | ID=Msa0048560-mRNA-1;Parent=Msa0048560;Name=Msa0048560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|306 |
| chr1_2 | exon | 900424 | 900862 | 900424 | ID=Msa0048560-mRNA-1:exon:240;Parent=Msa0048560-mRNA-1 |
| chr1_2 | exon | 900967 | 901064 | 900967 | ID=Msa0048560-mRNA-1:exon:241;Parent=Msa0048560-mRNA-1 |
| chr1_2 | exon | 901556 | 901939 | 901556 | ID=Msa0048560-mRNA-1:exon:242;Parent=Msa0048560-mRNA-1 |
| chr1_2 | CDS | 900424 | 900862 | 900424 | ID=Msa0048560-mRNA-1:cds;Parent=Msa0048560-mRNA-1 |
| chr1_2 | CDS | 900967 | 901064 | 900967 | ID=Msa0048560-mRNA-1:cds;Parent=Msa0048560-mRNA-1 |
| chr1_2 | CDS | 901556 | 901939 | 901556 | ID=Msa0048560-mRNA-1:cds;Parent=Msa0048560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
