Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049110 | XP_039688138.1 | 94.845 | 194 | 8 | 1 | 1 | 194 | 1 | 192 | 9.79e-132 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049110 | sp|Q1G3Q4|RITF1_ARATH | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.01e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049110 | A0A072VGU3 | 80.928 | 194 | 8 | 2 | 1 | 194 | 1 | 165 | 7.17e-104 | 305 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0049110 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049110 | MtrunA17_Chr1g0161601 | 84.259 | 108 | 16 | 1 | 1 | 108 | 38 | 144 | 3.08e-62 | 189 |
| Msa0049110 | MtrunA17_Chr8g0392151 | 42.544 | 228 | 84 | 3 | 12 | 192 | 14 | 241 | 3.95e-56 | 177 |
| Msa0049110 | MtrunA17_Chr7g0230511 | 42.029 | 138 | 72 | 4 | 5 | 140 | 3 | 134 | 5.07e-27 | 102 |
| Msa0049110 | MtrunA17_Chr2g0297251 | 36.250 | 160 | 92 | 5 | 10 | 164 | 36 | 190 | 3.33e-21 | 87.8 |
| Msa0049110 | MtrunA17_Chr4g0065041 | 39.394 | 132 | 73 | 4 | 10 | 139 | 7 | 133 | 2.76e-20 | 85.1 |
| Msa0049110 | MtrunA17_Chr1g0179781 | 34.591 | 159 | 88 | 8 | 13 | 164 | 9 | 158 | 4.65e-19 | 80.9 |
| Msa0049110 | MtrunA17_Chr7g0265291 | 38.346 | 133 | 71 | 6 | 13 | 139 | 9 | 136 | 6.08e-18 | 78.2 |
| Msa0049110 | MtrunA17_Chr4g0040071 | 35.556 | 135 | 71 | 6 | 13 | 140 | 17 | 142 | 5.46e-16 | 73.2 |
| Msa0049110 | MtrunA17_Chr5g0395181 | 33.708 | 178 | 100 | 8 | 13 | 183 | 23 | 189 | 5.47e-16 | 73.2 |
| Msa0049110 | MtrunA17_Chr8g0366581 | 34.615 | 156 | 81 | 8 | 13 | 160 | 35 | 177 | 1.36e-15 | 72.4 |
| Msa0049110 | MtrunA17_Chr5g0411151 | 31.429 | 175 | 99 | 8 | 13 | 180 | 37 | 197 | 1.88e-14 | 69.3 |
| Msa0049110 | MtrunA17_Chr5g0434331 | 31.073 | 177 | 102 | 5 | 13 | 186 | 45 | 204 | 2.18e-14 | 68.6 |
| Msa0049110 | MtrunA17_Chr8g0386511 | 29.940 | 167 | 78 | 5 | 38 | 186 | 6 | 151 | 5.27e-14 | 66.6 |
| Msa0049110 | MtrunA17_Chr2g0320561 | 34.783 | 138 | 80 | 6 | 13 | 141 | 6 | 142 | 2.83e-13 | 66.2 |
| Msa0049110 | MtrunA17_Chr2g0320551 | 34.058 | 138 | 81 | 6 | 13 | 141 | 6 | 142 | 1.20e-11 | 60.5 |
| Msa0049110 | MtrunA17_Chr4g0020811 | 33.103 | 145 | 69 | 7 | 13 | 139 | 8 | 142 | 3.46e-11 | 58.9 |
| Msa0049110 | MtrunA17_Chr2g0308401 | 33.103 | 145 | 69 | 7 | 13 | 139 | 6 | 140 | 3.77e-11 | 58.9 |
| Msa0049110 | MtrunA17_Chr2g0320521 | 33.824 | 136 | 80 | 6 | 13 | 139 | 8 | 142 | 5.90e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049110 | AT2G01818.1 | 43.571 | 140 | 70 | 5 | 9 | 140 | 9 | 147 | 9.80e-29 | 107 |
| Msa0049110 | AT3G60670.1 | 41.538 | 130 | 69 | 4 | 13 | 140 | 9 | 133 | 3.46e-24 | 95.9 |
| Msa0049110 | AT2G12646.3 | 41.667 | 132 | 70 | 4 | 10 | 139 | 2 | 128 | 3.52e-22 | 90.9 |
| Msa0049110 | AT2G12646.1 | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.08e-22 | 90.5 |
| Msa0049110 | AT2G12646.2 | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.08e-22 | 90.5 |
| Msa0049110 | AT1G31040.1 | 36.364 | 132 | 76 | 4 | 10 | 139 | 18 | 143 | 1.90e-20 | 85.9 |
| Msa0049110 | AT4G17900.2 | 31.522 | 184 | 108 | 7 | 13 | 188 | 22 | 195 | 3.93e-17 | 76.6 |
| Msa0049110 | AT4G17900.1 | 31.522 | 184 | 108 | 7 | 13 | 188 | 36 | 209 | 4.55e-17 | 76.6 |
| Msa0049110 | AT1G21000.1 | 38.806 | 134 | 66 | 6 | 13 | 139 | 18 | 142 | 2.16e-16 | 75.1 |
| Msa0049110 | AT1G21000.2 | 38.806 | 134 | 66 | 6 | 13 | 139 | 15 | 139 | 2.18e-16 | 75.1 |
| Msa0049110 | AT5G46710.3 | 30.303 | 198 | 110 | 6 | 13 | 186 | 14 | 207 | 9.59e-16 | 72.8 |
| Msa0049110 | AT5G46710.1 | 30.303 | 198 | 110 | 6 | 13 | 186 | 30 | 223 | 1.53e-15 | 72.4 |
| Msa0049110 | AT1G76590.1 | 37.313 | 134 | 68 | 6 | 13 | 139 | 20 | 144 | 2.31e-15 | 72.4 |
| Msa0049110 | AT1G43000.2 | 35.385 | 130 | 76 | 5 | 13 | 139 | 18 | 142 | 3.18e-15 | 71.6 |
| Msa0049110 | AT1G43000.1 | 35.385 | 130 | 76 | 5 | 13 | 139 | 11 | 135 | 3.43e-15 | 71.2 |
| Msa0049110 | AT2G27930.1 | 33.824 | 136 | 80 | 6 | 13 | 139 | 6 | 140 | 6.02e-15 | 70.1 |
| Msa0049110 | AT2G27930.4 | 33.824 | 136 | 80 | 6 | 13 | 139 | 6 | 140 | 6.02e-15 | 70.1 |
| Msa0049110 | AT2G27930.3 | 32.639 | 144 | 87 | 6 | 13 | 147 | 6 | 148 | 6.35e-15 | 69.7 |
| Msa0049110 | AT2G27930.2 | 32.639 | 144 | 87 | 6 | 13 | 147 | 6 | 148 | 6.35e-15 | 69.7 |
| Msa0049110 | AT5G46710.2 | 35.606 | 132 | 78 | 4 | 13 | 141 | 30 | 157 | 4.56e-14 | 67.4 |
| Msa0049110 | AT1G32700.1 | 34.351 | 131 | 78 | 5 | 13 | 140 | 14 | 139 | 7.13e-14 | 67.8 |
| Msa0049110 | AT2G01818.2 | 41.975 | 81 | 44 | 2 | 62 | 140 | 4 | 83 | 7.18e-12 | 61.2 |
Find 21 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1_2:-2320832 | None:intergenic |
| TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1_2:+2319271 | Msa0049110:CDS |
| TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1_2:-2320372 | None:intergenic |
| TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1_2:-2320270 | None:intergenic |
| ACCCTTTCAACAGATTCATT+TGG | 0.404698 | 1_2:-2320872 | None:intergenic |
| TAGATCACAATTGAGGAGCT+TGG | 0.458055 | 1_2:+2320791 | Msa0049110:intron |
| ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1_2:-2320271 | None:intergenic |
| AAACTAGAGATAGATCTCAT+AGG | 0.499860 | 1_2:-2320926 | None:intergenic |
| GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1_2:+2319258 | Msa0049110:CDS |
| ATCTCATTCTCTTCATCGAA+AGG | 0.512601 | 1_2:+2319410 | Msa0049110:CDS |
| AACCAAATGAATCTGTTGAA+AGG | 0.544922 | 1_2:+2320870 | Msa0049110:CDS |
| ACCAAATGAATCTGTTGAAA+GGG | 0.545715 | 1_2:+2320871 | Msa0049110:CDS |
| AGCAATCAAAATACTTGAGT+AGG | 0.578161 | 1_2:-2319479 | None:intergenic |
| GTATTGTTAGATCACAATTG+AGG | 0.598401 | 1_2:+2320784 | Msa0049110:intron |
| ACATCTCAAAAGCAAGCTGG+TGG | 0.603751 | 1_2:+2320296 | Msa0049110:CDS |
| TCAACATCTCAAAAGCAAGC+TGG | 0.604147 | 1_2:+2320293 | Msa0049110:CDS |
| GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1_2:-2320269 | None:intergenic |
| ATTCTGTTCCATCAAATGCA+AGG | 0.622156 | 1_2:+2320364 | Msa0049110:CDS |
| TGAATCTCAGAAAACGTCCA+AGG | 0.636921 | 1_2:+2320894 | Msa0049110:CDS |
| AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1_2:+2320823 | Msa0049110:CDS |
| GGTGGAATTTGTGAAGAATG+TGG | 0.715683 | 1_2:+2320314 | Msa0049110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATATATTCATCAA+TGG | - | chr1_2:2319866-2319885 | None:intergenic | 10.0% |
| !!! | GAATATATAAATTTTTTAAG+TGG | + | chr1_2:2319871-2319890 | Msa0049110:intron | 10.0% |
| !!! | ATTTTTTTTCAAATTATTAG+CGG | - | chr1_2:2320016-2320035 | None:intergenic | 10.0% |
| !! | ACTTATAAATATTATACTTT+CGG | + | chr1_2:2320503-2320522 | Msa0049110:intron | 10.0% |
| !! | AAAATTTATATATTCATCAA+TGG | - | chr1_2:2319866-2319885 | None:intergenic | 10.0% |
| !!! | GAATATATAAATTTTTTAAG+TGG | + | chr1_2:2319871-2319890 | Msa0049110:intron | 10.0% |
| !!! | ATTTTTTTTCAAATTATTAG+CGG | - | chr1_2:2320016-2320035 | None:intergenic | 10.0% |
| !! | ACTTATAAATATTATACTTT+CGG | + | chr1_2:2320503-2320522 | Msa0049110:intron | 10.0% |
| !! | TCTATTTATATGAGAAAATT+GGG | - | chr1_2:2319642-2319661 | None:intergenic | 15.0% |
| !! | TTCTATTTATATGAGAAAAT+TGG | - | chr1_2:2319643-2319662 | None:intergenic | 15.0% |
| !!! | TCAATATAAATAAATTTTGC+AGG | - | chr1_2:2320602-2320621 | None:intergenic | 15.0% |
| !!! | TAATTAACACTTTTATGTTT+TGG | - | chr1_2:2320665-2320684 | None:intergenic | 15.0% |
| !! | TTCACATTAAATTAAAATCT+AGG | - | chr1_2:2320723-2320742 | None:intergenic | 15.0% |
| !! | TCTATTTATATGAGAAAATT+GGG | - | chr1_2:2319642-2319661 | None:intergenic | 15.0% |
| !! | TTCTATTTATATGAGAAAAT+TGG | - | chr1_2:2319643-2319662 | None:intergenic | 15.0% |
| !!! | TCAATATAAATAAATTTTGC+AGG | - | chr1_2:2320602-2320621 | None:intergenic | 15.0% |
| !!! | TAATTAACACTTTTATGTTT+TGG | - | chr1_2:2320665-2320684 | None:intergenic | 15.0% |
| !! | TTCACATTAAATTAAAATCT+AGG | - | chr1_2:2320723-2320742 | None:intergenic | 15.0% |
| !!! | TTTTCTCATATAAATAGAAC+CGG | + | chr1_2:2319644-2319663 | Msa0049110:intron | 20.0% |
| !!! | TATTGATCTAATTTGCTTTT+AGG | + | chr1_2:2319735-2319754 | Msa0049110:intron | 20.0% |
| !! | AACAACATATATACTTTAGT+AGG | + | chr1_2:2320433-2320452 | Msa0049110:intron | 20.0% |
| !!! | ACATAAAAGTGTTAATTAGT+AGG | + | chr1_2:2320667-2320686 | Msa0049110:intron | 20.0% |
| !!! | CATAAAAGTGTTAATTAGTA+GGG | + | chr1_2:2320668-2320687 | Msa0049110:intron | 20.0% |
| !!! | TTTTCTCATATAAATAGAAC+CGG | + | chr1_2:2319644-2319663 | Msa0049110:intron | 20.0% |
| !!! | TATTGATCTAATTTGCTTTT+AGG | + | chr1_2:2319735-2319754 | Msa0049110:intron | 20.0% |
| !! | AACAACATATATACTTTAGT+AGG | + | chr1_2:2320433-2320452 | Msa0049110:intron | 20.0% |
| !!! | ACATAAAAGTGTTAATTAGT+AGG | + | chr1_2:2320667-2320686 | Msa0049110:intron | 20.0% |
| !!! | CATAAAAGTGTTAATTAGTA+GGG | + | chr1_2:2320668-2320687 | Msa0049110:intron | 20.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_2:2319338-2319357 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_2:2319491-2319510 | Msa0049110:CDS | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_2:2319761-2319780 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_2:2319782-2319801 | Msa0049110:intron | 25.0% |
| !! | AAATCCATATGTTACTTCTA+CGG | - | chr1_2:2320151-2320170 | None:intergenic | 25.0% |
| !!! | TATGCTTTTGAGTAGATAAA+AGG | + | chr1_2:2320462-2320481 | Msa0049110:intron | 25.0% |
| ! | TTGAAACTGATCAAAATGTA+AGG | + | chr1_2:2320618-2320637 | Msa0049110:intron | 25.0% |
| ! | AGGACTACAACAAAATTATA+AGG | + | chr1_2:2320638-2320657 | Msa0049110:intron | 25.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_2:2319338-2319357 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_2:2319491-2319510 | Msa0049110:CDS | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_2:2319761-2319780 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_2:2319782-2319801 | Msa0049110:intron | 25.0% |
| !! | AAATCCATATGTTACTTCTA+CGG | - | chr1_2:2320151-2320170 | None:intergenic | 25.0% |
| !!! | TATGCTTTTGAGTAGATAAA+AGG | + | chr1_2:2320462-2320481 | Msa0049110:intron | 25.0% |
| ! | TTGAAACTGATCAAAATGTA+AGG | + | chr1_2:2320618-2320637 | Msa0049110:intron | 25.0% |
| ! | AGGACTACAACAAAATTATA+AGG | + | chr1_2:2320638-2320657 | Msa0049110:intron | 25.0% |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_2:2319271-2319290 | Msa0049110:CDS | 30.0% | |
| ! | TTGATGCACTTTTGATAGAT+AGG | + | chr1_2:2319295-2319314 | Msa0049110:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_2:2319353-2319372 | Msa0049110:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_2:2319360-2319379 | Msa0049110:CDS | 30.0% |
| ! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1_2:2319376-2319395 | Msa0049110:CDS | 30.0% |
| ! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1_2:2319386-2319405 | Msa0049110:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_2:2319482-2319501 | None:intergenic | 30.0% | |
| ATGAAATCAATTACTACCTC+CGG | - | chr1_2:2319666-2319685 | None:intergenic | 30.0% | |
| GGATAGTTTATGCTACATTA+TGG | + | chr1_2:2319803-2319822 | Msa0049110:intron | 30.0% | |
| !!! | GATGGTTTTAAACACAAACA+CGG | + | chr1_2:2319954-2319973 | Msa0049110:intron | 30.0% |
| ! | TTCAAATTATTAGCGGATAC+CGG | - | chr1_2:2320009-2320028 | None:intergenic | 30.0% |
| ! | AATCCATATGTTACTTCTAC+GGG | - | chr1_2:2320150-2320169 | None:intergenic | 30.0% |
| GTATTGTTAGATCACAATTG+AGG | + | chr1_2:2320784-2320803 | Msa0049110:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_2:2320823-2320842 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_2:2320823-2320842 | Msa0049110:CDS | 30.0% | |
| AACCAAATGAATCTGTTGAA+AGG | + | chr1_2:2320870-2320889 | Msa0049110:CDS | 30.0% | |
| ACCAAATGAATCTGTTGAAA+GGG | + | chr1_2:2320871-2320890 | Msa0049110:CDS | 30.0% | |
| AAACTAGAGATAGATCTCAT+AGG | - | chr1_2:2320929-2320948 | None:intergenic | 30.0% | |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_2:2319271-2319290 | Msa0049110:CDS | 30.0% | |
| ! | TTGATGCACTTTTGATAGAT+AGG | + | chr1_2:2319295-2319314 | Msa0049110:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_2:2319353-2319372 | Msa0049110:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_2:2319360-2319379 | Msa0049110:CDS | 30.0% |
| ! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1_2:2319376-2319395 | Msa0049110:CDS | 30.0% |
| ! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1_2:2319386-2319405 | Msa0049110:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_2:2319482-2319501 | None:intergenic | 30.0% | |
| ATGAAATCAATTACTACCTC+CGG | - | chr1_2:2319666-2319685 | None:intergenic | 30.0% | |
| GGATAGTTTATGCTACATTA+TGG | + | chr1_2:2319803-2319822 | Msa0049110:intron | 30.0% | |
| !!! | GATGGTTTTAAACACAAACA+CGG | + | chr1_2:2319954-2319973 | Msa0049110:intron | 30.0% |
| ! | TTCAAATTATTAGCGGATAC+CGG | - | chr1_2:2320009-2320028 | None:intergenic | 30.0% |
| ! | AATCCATATGTTACTTCTAC+GGG | - | chr1_2:2320150-2320169 | None:intergenic | 30.0% |
| GTATTGTTAGATCACAATTG+AGG | + | chr1_2:2320784-2320803 | Msa0049110:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_2:2320823-2320842 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_2:2320823-2320842 | Msa0049110:CDS | 30.0% | |
| AACCAAATGAATCTGTTGAA+AGG | + | chr1_2:2320870-2320889 | Msa0049110:CDS | 30.0% | |
| ACCAAATGAATCTGTTGAAA+GGG | + | chr1_2:2320871-2320890 | Msa0049110:CDS | 30.0% | |
| AAACTAGAGATAGATCTCAT+AGG | - | chr1_2:2320929-2320948 | None:intergenic | 30.0% | |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_2:2319276-2319295 | None:intergenic | 35.0% |
| ! | GCACTTTTGATAGATAGGTT+TGG | + | chr1_2:2319300-2319319 | Msa0049110:CDS | 35.0% |
| ATCTCATTCTCTTCATCGAA+AGG | + | chr1_2:2319410-2319429 | Msa0049110:CDS | 35.0% | |
| TCTCATATAAATAGAACCGG+AGG | + | chr1_2:2319647-2319666 | Msa0049110:intron | 35.0% | |
| ! | TCCATTAGTCATAGTCTTGA+TGG | + | chr1_2:2319936-2319955 | Msa0049110:intron | 35.0% |
| ACCATCAAGACTATGACTAA+TGG | - | chr1_2:2319940-2319959 | None:intergenic | 35.0% | |
| TATATGTATCAGTGTCGTGT+CGG | + | chr1_2:2320054-2320073 | Msa0049110:intron | 35.0% | |
| GCACATACATTCCTTGAATT+AGG | - | chr1_2:2320115-2320134 | None:intergenic | 35.0% | |
| CACGTTGTAAGTACAAAGTT+AGG | - | chr1_2:2320196-2320215 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_2:2320364-2320383 | Msa0049110:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_2:2320375-2320394 | None:intergenic | 35.0% | |
| ACCCTTTCAACAGATTCATT+TGG | - | chr1_2:2320875-2320894 | None:intergenic | 35.0% | |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_2:2319276-2319295 | None:intergenic | 35.0% |
| ! | GCACTTTTGATAGATAGGTT+TGG | + | chr1_2:2319300-2319319 | Msa0049110:CDS | 35.0% |
| ATCTCATTCTCTTCATCGAA+AGG | + | chr1_2:2319410-2319429 | Msa0049110:CDS | 35.0% | |
| TCTCATATAAATAGAACCGG+AGG | + | chr1_2:2319647-2319666 | Msa0049110:intron | 35.0% | |
| ! | TCCATTAGTCATAGTCTTGA+TGG | + | chr1_2:2319936-2319955 | Msa0049110:intron | 35.0% |
| ACCATCAAGACTATGACTAA+TGG | - | chr1_2:2319940-2319959 | None:intergenic | 35.0% | |
| TATATGTATCAGTGTCGTGT+CGG | + | chr1_2:2320054-2320073 | Msa0049110:intron | 35.0% | |
| GCACATACATTCCTTGAATT+AGG | - | chr1_2:2320115-2320134 | None:intergenic | 35.0% | |
| CACGTTGTAAGTACAAAGTT+AGG | - | chr1_2:2320196-2320215 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_2:2320364-2320383 | Msa0049110:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_2:2320375-2320394 | None:intergenic | 35.0% | |
| ACCCTTTCAACAGATTCATT+TGG | - | chr1_2:2320875-2320894 | None:intergenic | 35.0% | |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_2:2319258-2319277 | Msa0049110:CDS | 40.0% | |
| TGTTGACCTAACTTTCTCTG+AGG | - | chr1_2:2319566-2319585 | None:intergenic | 40.0% | |
| CAACCCGTAGAAGTAACATA+TGG | + | chr1_2:2320144-2320163 | Msa0049110:intron | 40.0% | |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_2:2320274-2320293 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_2:2320293-2320312 | Msa0049110:CDS | 40.0% | |
| GGTGGAATTTGTGAAGAATG+TGG | + | chr1_2:2320314-2320333 | Msa0049110:CDS | 40.0% | |
| TAGATCACAATTGAGGAGCT+TGG | + | chr1_2:2320791-2320810 | Msa0049110:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_2:2320835-2320854 | None:intergenic | 40.0% |
| TGAATCTCAGAAAACGTCCA+AGG | + | chr1_2:2320894-2320913 | Msa0049110:CDS | 40.0% | |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_2:2319258-2319277 | Msa0049110:CDS | 40.0% | |
| TGTTGACCTAACTTTCTCTG+AGG | - | chr1_2:2319566-2319585 | None:intergenic | 40.0% | |
| CAACCCGTAGAAGTAACATA+TGG | + | chr1_2:2320144-2320163 | Msa0049110:intron | 40.0% | |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_2:2320274-2320293 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_2:2320293-2320312 | Msa0049110:CDS | 40.0% | |
| GGTGGAATTTGTGAAGAATG+TGG | + | chr1_2:2320314-2320333 | Msa0049110:CDS | 40.0% | |
| TAGATCACAATTGAGGAGCT+TGG | + | chr1_2:2320791-2320810 | Msa0049110:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_2:2320835-2320854 | None:intergenic | 40.0% |
| TGAATCTCAGAAAACGTCCA+AGG | + | chr1_2:2320894-2320913 | Msa0049110:CDS | 40.0% | |
| TTGTTTACTACTCCCTCTGC+TGG | + | chr1_2:2319539-2319558 | Msa0049110:intron | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_2:2320273-2320292 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+TGG | + | chr1_2:2320296-2320315 | Msa0049110:CDS | 45.0% | |
| !!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1_2:2320914-2320933 | None:intergenic | 45.0% |
| TTGTTTACTACTCCCTCTGC+TGG | + | chr1_2:2319539-2319558 | Msa0049110:intron | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_2:2320273-2320292 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+TGG | + | chr1_2:2320296-2320315 | Msa0049110:CDS | 45.0% | |
| !!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1_2:2320914-2320933 | None:intergenic | 45.0% |
| !!! | TTTGTTTTTTTTTTTTTTTT+TGG | + | chr1_2:2320406-2320425 | Msa0049110:intron | 5.0% |
| !! | AATGATAAAAAATAATTATA+AGG | - | chr1_2:2320530-2320549 | None:intergenic | 5.0% |
| !!! | TTTGTTTTTTTTTTTTTTTT+TGG | + | chr1_2:2320406-2320425 | Msa0049110:intron | 5.0% |
| !! | AATGATAAAAAATAATTATA+AGG | - | chr1_2:2320530-2320549 | None:intergenic | 5.0% |
| ! | TTTCTCTGAGGACCAGCAGA+GGG | - | chr1_2:2319554-2319573 | None:intergenic | 50.0% |
| GCTGGTCCTCAGAGAAAGTT+AGG | + | chr1_2:2319557-2319576 | Msa0049110:intron | 50.0% | |
| CAACAAGAACACTGACACGC+CGG | + | chr1_2:2319987-2320006 | Msa0049110:intron | 50.0% | |
| ACACAACGCATGTCCGACAT+CGG | + | chr1_2:2320083-2320102 | Msa0049110:intron | 50.0% | |
| AATTAGGCGTGTCCCGATGT+CGG | - | chr1_2:2320099-2320118 | None:intergenic | 50.0% | |
| ATCGGGACACGCCTAATTCA+AGG | + | chr1_2:2320101-2320120 | Msa0049110:intron | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_2:2320272-2320291 | None:intergenic | 50.0% | |
| ! | TTTCTCTGAGGACCAGCAGA+GGG | - | chr1_2:2319554-2319573 | None:intergenic | 50.0% |
| GCTGGTCCTCAGAGAAAGTT+AGG | + | chr1_2:2319557-2319576 | Msa0049110:intron | 50.0% | |
| CAACAAGAACACTGACACGC+CGG | + | chr1_2:2319987-2320006 | Msa0049110:intron | 50.0% | |
| ACACAACGCATGTCCGACAT+CGG | + | chr1_2:2320083-2320102 | Msa0049110:intron | 50.0% | |
| AATTAGGCGTGTCCCGATGT+CGG | - | chr1_2:2320099-2320118 | None:intergenic | 50.0% | |
| ATCGGGACACGCCTAATTCA+AGG | + | chr1_2:2320101-2320120 | Msa0049110:intron | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_2:2320272-2320291 | None:intergenic | 50.0% | |
| ! | CTTTCTCTGAGGACCAGCAG+AGG | - | chr1_2:2319555-2319574 | None:intergenic | 55.0% |
| CACAACGCATGTCCGACATC+GGG | + | chr1_2:2320084-2320103 | Msa0049110:intron | 55.0% | |
| ! | CTTTCTCTGAGGACCAGCAG+AGG | - | chr1_2:2319555-2319574 | None:intergenic | 55.0% |
| CACAACGCATGTCCGACATC+GGG | + | chr1_2:2320084-2320103 | Msa0049110:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 2319255 | 2320964 | 2319255 | ID=Msa0049110;Name=Msa0049110 |
| chr1_2 | mRNA | 2319255 | 2320964 | 2319255 | ID=Msa0049110-mRNA-1;Parent=Msa0049110;Name=Msa0049110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|194 |
| chr1_2 | exon | 2319255 | 2319512 | 2319255 | ID=Msa0049110-mRNA-1:exon:466;Parent=Msa0049110-mRNA-1 |
| chr1_2 | exon | 2320230 | 2320385 | 2320230 | ID=Msa0049110-mRNA-1:exon:467;Parent=Msa0049110-mRNA-1 |
| chr1_2 | exon | 2320794 | 2320964 | 2320794 | ID=Msa0049110-mRNA-1:exon:468;Parent=Msa0049110-mRNA-1 |
| chr1_2 | CDS | 2319255 | 2319512 | 2319255 | ID=Msa0049110-mRNA-1:cds;Parent=Msa0049110-mRNA-1 |
| chr1_2 | CDS | 2320230 | 2320385 | 2320230 | ID=Msa0049110-mRNA-1:cds;Parent=Msa0049110-mRNA-1 |
| chr1_2 | CDS | 2320794 | 2320964 | 2320794 | ID=Msa0049110-mRNA-1:cds;Parent=Msa0049110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
