Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049220 | XP_003598874.1 | 96.092 | 435 | 17 | 0 | 9 | 443 | 4 | 438 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049220 | sp|G7J1L1|TF80_MEDTR | 96.092 | 435 | 17 | 0 | 9 | 443 | 4 | 438 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049220 | A0A2Z6MW56 | 89.796 | 441 | 42 | 1 | 6 | 443 | 13 | 453 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0049220 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049220 | MtrunA17_Chr3g0085681 | 96.092 | 435 | 17 | 0 | 9 | 443 | 4 | 438 | 0.0 | 870 |
| Msa0049220 | MtrunA17_Chr3g0085361 | 94.286 | 350 | 19 | 1 | 94 | 443 | 4 | 352 | 0.0 | 680 |
| Msa0049220 | MtrunA17_Chr5g0396491 | 54.566 | 449 | 192 | 5 | 7 | 443 | 32 | 480 | 1.63e-168 | 482 |
| Msa0049220 | MtrunA17_Chr4g0038851 | 49.888 | 447 | 214 | 4 | 7 | 443 | 25 | 471 | 2.22e-158 | 456 |
| Msa0049220 | MtrunA17_Chr5g0447691 | 30.549 | 419 | 231 | 6 | 31 | 441 | 178 | 544 | 1.65e-60 | 206 |
| Msa0049220 | MtrunA17_Chr8g0376381 | 29.787 | 423 | 217 | 10 | 31 | 442 | 170 | 523 | 6.79e-59 | 201 |
| Msa0049220 | MtrunA17_Chr1g0159461 | 29.736 | 417 | 237 | 4 | 31 | 441 | 226 | 592 | 1.13e-58 | 202 |
| Msa0049220 | MtrunA17_Chr7g0224271 | 29.535 | 430 | 227 | 6 | 31 | 441 | 301 | 673 | 1.26e-58 | 203 |
| Msa0049220 | MtrunA17_Chr2g0319091 | 30.695 | 417 | 231 | 7 | 31 | 440 | 213 | 578 | 3.61e-55 | 192 |
| Msa0049220 | MtrunA17_Chr5g0445331 | 27.446 | 419 | 248 | 6 | 31 | 441 | 162 | 532 | 2.28e-54 | 189 |
| Msa0049220 | MtrunA17_Chr3g0125811 | 28.066 | 424 | 249 | 4 | 24 | 441 | 197 | 570 | 4.79e-54 | 189 |
| Msa0049220 | MtrunA17_Chr3g0101141 | 28.058 | 417 | 244 | 6 | 31 | 441 | 176 | 542 | 9.38e-54 | 188 |
| Msa0049220 | MtrunA17_Chr2g0306641 | 30.714 | 420 | 224 | 10 | 31 | 441 | 126 | 487 | 4.83e-53 | 185 |
| Msa0049220 | MtrunA17_Chr7g0245601 | 29.157 | 415 | 225 | 8 | 33 | 441 | 441 | 792 | 6.19e-52 | 187 |
| Msa0049220 | MtrunA17_Chr4g0076091 | 27.316 | 421 | 241 | 8 | 31 | 440 | 176 | 542 | 2.73e-47 | 170 |
| Msa0049220 | MtrunA17_Chr4g0057291 | 27.078 | 421 | 244 | 8 | 31 | 440 | 293 | 661 | 5.58e-46 | 169 |
| Msa0049220 | MtrunA17_Chr2g0290241 | 25.799 | 438 | 259 | 8 | 19 | 441 | 39 | 425 | 5.58e-45 | 162 |
| Msa0049220 | MtrunA17_Chr2g0328391 | 26.555 | 418 | 250 | 6 | 31 | 440 | 300 | 668 | 8.01e-45 | 166 |
| Msa0049220 | MtrunA17_Chr8g0357601 | 28.169 | 426 | 235 | 9 | 31 | 441 | 183 | 552 | 1.50e-44 | 163 |
| Msa0049220 | MtrunA17_Chr2g0328411 | 28.469 | 418 | 237 | 8 | 31 | 440 | 290 | 653 | 2.73e-44 | 164 |
| Msa0049220 | MtrunA17_Chr4g0031721 | 27.990 | 418 | 242 | 7 | 31 | 440 | 317 | 683 | 2.81e-44 | 164 |
| Msa0049220 | MtrunA17_Chr4g0031741 | 27.512 | 418 | 242 | 7 | 31 | 440 | 285 | 649 | 5.08e-43 | 160 |
| Msa0049220 | MtrunA17_Chr4g0031711 | 27.423 | 423 | 242 | 9 | 31 | 440 | 362 | 732 | 6.74e-42 | 157 |
| Msa0049220 | MtrunA17_Chr7g0238891 | 27.273 | 418 | 247 | 6 | 31 | 441 | 373 | 740 | 7.87e-42 | 157 |
| Msa0049220 | MtrunA17_Chr2g0328341 | 26.969 | 419 | 243 | 8 | 31 | 440 | 273 | 637 | 2.88e-41 | 155 |
| Msa0049220 | MtrunA17_Chr2g0328431 | 27.818 | 417 | 241 | 7 | 31 | 440 | 290 | 653 | 3.29e-41 | 155 |
| Msa0049220 | MtrunA17_Chr2g0328381 | 25.542 | 415 | 254 | 7 | 31 | 440 | 276 | 640 | 5.07e-41 | 154 |
| Msa0049220 | MtrunA17_Chr4g0057891 | 26.241 | 423 | 248 | 7 | 31 | 441 | 150 | 520 | 6.06e-41 | 152 |
| Msa0049220 | MtrunA17_Chr4g0031701 | 26.619 | 417 | 245 | 9 | 31 | 436 | 255 | 621 | 4.29e-40 | 152 |
| Msa0049220 | MtrunA17_Chr4g0038761 | 29.612 | 412 | 231 | 11 | 33 | 441 | 87 | 442 | 4.40e-40 | 149 |
| Msa0049220 | MtrunA17_Chr4g0031731 | 26.619 | 417 | 245 | 9 | 31 | 436 | 255 | 621 | 1.96e-39 | 150 |
| Msa0049220 | MtrunA17_Chr4g0039661 | 27.336 | 428 | 239 | 12 | 26 | 441 | 188 | 555 | 7.97e-36 | 139 |
| Msa0049220 | MtrunA17_Chr2g0294471 | 28.037 | 428 | 237 | 9 | 31 | 442 | 205 | 577 | 1.27e-35 | 138 |
| Msa0049220 | MtrunA17_Chr1g0183641 | 26.056 | 426 | 248 | 10 | 23 | 443 | 116 | 479 | 1.35e-35 | 137 |
| Msa0049220 | MtrunA17_Chr2g0328401 | 26.854 | 391 | 227 | 6 | 31 | 415 | 291 | 628 | 1.78e-35 | 139 |
| Msa0049220 | MtrunA17_Chr2g0294461 | 27.506 | 429 | 241 | 8 | 31 | 442 | 211 | 586 | 4.38e-35 | 137 |
| Msa0049220 | MtrunA17_Chr5g0401131 | 23.349 | 424 | 264 | 8 | 31 | 441 | 115 | 490 | 4.87e-32 | 127 |
| Msa0049220 | MtrunA17_Chr2g0328361 | 25.225 | 444 | 244 | 11 | 6 | 440 | 250 | 614 | 7.49e-32 | 128 |
| Msa0049220 | MtrunA17_Chr5g0424131 | 24.190 | 401 | 236 | 7 | 56 | 440 | 150 | 498 | 3.00e-29 | 119 |
| Msa0049220 | MtrunA17_Chr3g0087711 | 87.931 | 58 | 7 | 0 | 181 | 238 | 1 | 58 | 3.17e-28 | 105 |
| Msa0049220 | MtrunA17_Chr3g0110971 | 39.752 | 161 | 83 | 3 | 296 | 442 | 428 | 588 | 4.58e-28 | 117 |
| Msa0049220 | MtrunA17_Chr3g0110971 | 31.100 | 209 | 130 | 4 | 31 | 234 | 220 | 419 | 1.27e-27 | 115 |
| Msa0049220 | MtrunA17_Chr3g0114841 | 24.215 | 446 | 256 | 13 | 21 | 440 | 110 | 499 | 5.08e-28 | 116 |
| Msa0049220 | MtrunA17_Chr1g0200401 | 24.289 | 457 | 257 | 15 | 15 | 441 | 62 | 459 | 1.28e-27 | 114 |
| Msa0049220 | MtrunA17_Chr4g0053901 | 24.537 | 432 | 280 | 10 | 31 | 440 | 60 | 467 | 2.96e-26 | 110 |
| Msa0049220 | MtrunA17_Chr2g0328371 | 25.704 | 284 | 159 | 5 | 112 | 392 | 12 | 246 | 4.11e-26 | 106 |
| Msa0049220 | MtrunA17_Chr5g0401421 | 22.811 | 434 | 287 | 10 | 31 | 440 | 36 | 445 | 5.54e-24 | 103 |
| Msa0049220 | MtrunA17_Chr7g0236851 | 25.714 | 420 | 244 | 13 | 31 | 440 | 295 | 656 | 1.90e-23 | 103 |
| Msa0049220 | MtrunA17_Chr7g0270031 | 24.051 | 395 | 236 | 12 | 57 | 442 | 216 | 555 | 2.47e-22 | 99.8 |
| Msa0049220 | MtrunA17_Chr1g0194621 | 24.561 | 399 | 226 | 13 | 61 | 442 | 179 | 519 | 2.54e-19 | 90.5 |
| Msa0049220 | MtrunA17_Chr6g0468561 | 24.235 | 425 | 250 | 16 | 31 | 441 | 296 | 662 | 2.39e-18 | 87.8 |
| Msa0049220 | MtrunA17_Chr2g0329591 | 22.529 | 435 | 255 | 11 | 31 | 441 | 75 | 451 | 3.45e-18 | 86.7 |
| Msa0049220 | MtrunA17_Chr8g0383981 | 23.797 | 395 | 226 | 13 | 57 | 440 | 165 | 495 | 1.88e-17 | 84.7 |
| Msa0049220 | MtrunA17_Chr2g0323111 | 29.452 | 146 | 102 | 1 | 295 | 440 | 161 | 305 | 2.85e-16 | 79.3 |
| Msa0049220 | MtrunA17_Chr1g0207361 | 46.535 | 101 | 51 | 2 | 249 | 346 | 64 | 164 | 2.99e-16 | 76.3 |
| Msa0049220 | MtrunA17_Chr4g0012071 | 21.875 | 416 | 259 | 11 | 31 | 441 | 197 | 551 | 5.42e-16 | 80.1 |
| Msa0049220 | MtrunA17_Chr7g0230771 | 31.915 | 141 | 94 | 1 | 31 | 171 | 376 | 514 | 3.00e-11 | 65.5 |
| Msa0049220 | MtrunA17_Chr7g0230731 | 31.915 | 141 | 94 | 1 | 31 | 171 | 373 | 511 | 3.45e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049220 | AT1G50420.1 | 49.107 | 448 | 217 | 4 | 7 | 443 | 34 | 481 | 5.58e-150 | 435 |
| Msa0049220 | AT1G66350.1 | 31.075 | 428 | 225 | 10 | 21 | 442 | 144 | 507 | 4.53e-63 | 212 |
| Msa0049220 | AT5G48150.1 | 30.093 | 432 | 238 | 5 | 16 | 441 | 117 | 490 | 3.71e-61 | 207 |
| Msa0049220 | AT5G48150.4 | 30.093 | 432 | 238 | 5 | 16 | 441 | 117 | 490 | 3.71e-61 | 207 |
| Msa0049220 | AT5G48150.2 | 30.093 | 432 | 238 | 5 | 16 | 441 | 117 | 490 | 3.71e-61 | 207 |
| Msa0049220 | AT5G48150.3 | 30.093 | 432 | 238 | 5 | 16 | 441 | 117 | 490 | 3.71e-61 | 207 |
| Msa0049220 | AT3G03450.1 | 29.481 | 424 | 226 | 10 | 31 | 442 | 184 | 546 | 2.57e-59 | 203 |
| Msa0049220 | AT1G50600.3 | 29.257 | 417 | 239 | 4 | 31 | 441 | 160 | 526 | 7.38e-57 | 196 |
| Msa0049220 | AT2G04890.1 | 30.340 | 412 | 234 | 6 | 31 | 441 | 54 | 413 | 1.77e-56 | 192 |
| Msa0049220 | AT1G50600.1 | 29.257 | 417 | 239 | 4 | 31 | 441 | 231 | 597 | 2.76e-56 | 196 |
| Msa0049220 | AT1G50600.2 | 29.257 | 417 | 239 | 4 | 31 | 441 | 235 | 601 | 3.55e-56 | 196 |
| Msa0049220 | AT1G14920.1 | 29.343 | 426 | 219 | 10 | 31 | 442 | 173 | 530 | 9.87e-55 | 191 |
| Msa0049220 | AT2G01570.1 | 28.504 | 421 | 229 | 8 | 31 | 442 | 225 | 582 | 3.24e-54 | 190 |
| Msa0049220 | AT4G17230.1 | 28.777 | 417 | 241 | 6 | 31 | 441 | 159 | 525 | 2.07e-51 | 182 |
| Msa0049220 | AT4G17230.2 | 28.777 | 417 | 241 | 6 | 31 | 441 | 159 | 525 | 2.07e-51 | 182 |
| Msa0049220 | AT3G54220.1 | 28.744 | 414 | 235 | 7 | 33 | 443 | 296 | 652 | 1.08e-50 | 182 |
| Msa0049220 | AT1G21450.1 | 28.774 | 424 | 245 | 7 | 25 | 441 | 220 | 593 | 5.96e-50 | 179 |
| Msa0049220 | AT1G63100.1 | 25.059 | 427 | 252 | 5 | 31 | 440 | 253 | 628 | 1.45e-44 | 164 |
| Msa0049220 | AT1G63100.2 | 25.059 | 427 | 252 | 5 | 31 | 440 | 278 | 653 | 1.92e-44 | 164 |
| Msa0049220 | AT2G29060.2 | 28.504 | 421 | 239 | 10 | 31 | 440 | 285 | 654 | 3.21e-43 | 161 |
| Msa0049220 | AT2G29060.1 | 28.504 | 421 | 239 | 10 | 31 | 440 | 322 | 691 | 5.00e-43 | 161 |
| Msa0049220 | AT1G07530.1 | 27.316 | 421 | 242 | 9 | 31 | 440 | 397 | 764 | 2.13e-42 | 160 |
| Msa0049220 | AT5G59450.1 | 28.504 | 421 | 241 | 8 | 31 | 441 | 228 | 598 | 2.85e-41 | 155 |
| Msa0049220 | AT3G46600.2 | 27.273 | 418 | 246 | 6 | 31 | 441 | 5 | 371 | 1.51e-38 | 143 |
| Msa0049220 | AT5G41920.1 | 27.644 | 416 | 237 | 9 | 31 | 441 | 44 | 400 | 1.80e-38 | 144 |
| Msa0049220 | AT3G46600.3 | 27.880 | 434 | 251 | 9 | 19 | 441 | 165 | 547 | 1.20e-37 | 144 |
| Msa0049220 | AT3G46600.1 | 27.880 | 434 | 251 | 9 | 19 | 441 | 197 | 579 | 3.12e-37 | 143 |
| Msa0049220 | AT1G07520.2 | 25.117 | 426 | 245 | 9 | 34 | 440 | 158 | 528 | 1.68e-35 | 138 |
| Msa0049220 | AT1G07520.4 | 25.117 | 426 | 245 | 9 | 34 | 440 | 158 | 528 | 1.68e-35 | 138 |
| Msa0049220 | AT1G55580.1 | 24.945 | 453 | 246 | 7 | 31 | 441 | 45 | 445 | 2.29e-35 | 136 |
| Msa0049220 | AT1G07520.3 | 25.117 | 426 | 245 | 9 | 34 | 440 | 323 | 693 | 4.99e-35 | 138 |
| Msa0049220 | AT1G07520.1 | 25.117 | 426 | 245 | 9 | 34 | 440 | 322 | 692 | 5.52e-35 | 138 |
| Msa0049220 | AT2G37650.1 | 25.837 | 418 | 251 | 7 | 31 | 441 | 348 | 713 | 2.05e-34 | 136 |
| Msa0049220 | AT2G37650.2 | 25.837 | 418 | 251 | 7 | 31 | 441 | 336 | 701 | 2.15e-34 | 136 |
| Msa0049220 | AT5G66770.1 | 27.187 | 423 | 237 | 9 | 31 | 441 | 221 | 584 | 3.57e-34 | 135 |
| Msa0049220 | AT2G29065.1 | 24.590 | 427 | 253 | 8 | 31 | 440 | 253 | 627 | 6.55e-32 | 129 |
| Msa0049220 | AT4G37650.1 | 23.112 | 437 | 256 | 12 | 31 | 441 | 147 | 529 | 1.15e-31 | 127 |
| Msa0049220 | AT3G50650.1 | 25.743 | 404 | 226 | 7 | 53 | 441 | 198 | 542 | 1.85e-31 | 127 |
| Msa0049220 | AT5G17490.1 | 30.769 | 208 | 133 | 5 | 31 | 234 | 161 | 361 | 4.90e-29 | 119 |
| Msa0049220 | AT5G17490.1 | 38.000 | 150 | 90 | 2 | 295 | 442 | 369 | 517 | 1.00e-25 | 110 |
| Msa0049220 | AT5G52510.1 | 23.611 | 432 | 249 | 9 | 31 | 441 | 269 | 640 | 6.72e-29 | 120 |
| Msa0049220 | AT3G49950.1 | 23.077 | 429 | 259 | 13 | 31 | 440 | 31 | 407 | 4.27e-24 | 103 |
| Msa0049220 | AT4G08250.1 | 22.603 | 438 | 271 | 12 | 17 | 440 | 93 | 476 | 3.49e-23 | 102 |
Find 69 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAGTTTGCTAATTAT+TGG | 0.118308 | 1_2:-2387359 | None:intergenic |
| CTGTATCGGCCTGGAAATTT+AGG | 0.184893 | 1_2:+2388068 | Msa0049220:CDS |
| GACAACCGAAGCAGGGATTT+TGG | 0.226524 | 1_2:+2387316 | Msa0049220:CDS |
| TCTGAATGGATGTAATTTAA+TGG | 0.250687 | 1_2:+2387706 | Msa0049220:CDS |
| ATTCAAAGACTTAAAATTGC+TGG | 0.308650 | 1_2:+2387911 | Msa0049220:CDS |
| AAACTCGAGAGCATGCTTCT+TGG | 0.323417 | 1_2:+2387815 | Msa0049220:CDS |
| ATGATTGTTTACTTGTTTGC+TGG | 0.348919 | 1_2:+2388026 | Msa0049220:CDS |
| TCCAAGTGCTTCACTGAAAT+AGG | 0.355279 | 1_2:-2386967 | None:intergenic |
| TTAAGAAAGATCCCCATCTT+AGG | 0.362744 | 1_2:-2387629 | None:intergenic |
| TAATTGCTTGATTTGTGATC+AGG | 0.367971 | 1_2:-2387118 | None:intergenic |
| CCGCCCCATCTGAAAATTAC+AGG | 0.369403 | 1_2:+2387248 | Msa0049220:CDS |
| TTTAGGTGCTTCACCTAAGA+TGG | 0.374066 | 1_2:+2387616 | Msa0049220:CDS |
| TTCAGATGGGGCGGACCTCC+TGG | 0.389229 | 1_2:-2387239 | None:intergenic |
| AAGAGGTGATAATGCTGAAT+CGG | 0.390322 | 1_2:-2387591 | None:intergenic |
| GAATCATCACCTAAATTTCC+AGG | 0.414889 | 1_2:-2388077 | None:intergenic |
| AATTCCCTCAGCCAGTGATA+TGG | 0.418979 | 1_2:-2386792 | None:intergenic |
| TCTTGCCACTGATGATGAAA+TGG | 0.424264 | 1_2:+2387457 | Msa0049220:CDS |
| CACTCAATAAGAGGGATCAT+TGG | 0.426274 | 1_2:-2386840 | None:intergenic |
| TGAATCGATGGAACTTGAAA+AGG | 0.441610 | 1_2:+2387142 | Msa0049220:CDS |
| ATTATTGGATTGAACTGTAA+AGG | 0.444269 | 1_2:-2387344 | None:intergenic |
| TCAGTAATCACTAAAAGTTT+CGG | 0.445565 | 1_2:-2387671 | None:intergenic |
| TAAAATTGCTGGATTTATGA+AGG | 0.446477 | 1_2:+2387922 | Msa0049220:CDS |
| TTTCATTTGACAACCGAAGC+AGG | 0.447617 | 1_2:+2387308 | Msa0049220:CDS |
| AAAATCCAAAATCCCTGCTT+CGG | 0.483217 | 1_2:-2387321 | None:intergenic |
| TGTGCAAAATGTGTTGCATC+TGG | 0.490537 | 1_2:+2386861 | Msa0049220:CDS |
| AGAGGTGATAATGCTGAATC+GGG | 0.492776 | 1_2:-2387590 | None:intergenic |
| TTAGGTGCTTCACCTAAGAT+GGG | 0.494167 | 1_2:+2387617 | Msa0049220:CDS |
| CACTAGGTTCGCCATATCAC+TGG | 0.495093 | 1_2:+2386781 | Msa0049220:CDS |
| GAAAACTTGCCTGTCAAGAC+AGG | 0.495316 | 1_2:+2387392 | Msa0049220:CDS |
| GAACAGGAATCAAATCTGAA+TGG | 0.501626 | 1_2:+2387692 | Msa0049220:CDS |
| ATTTATCCATTGCGCTGGCT+CGG | 0.503400 | 1_2:-2387192 | None:intergenic |
| CAACTCAGCTGTTATGCACT+AGG | 0.503968 | 1_2:+2386765 | Msa0049220:CDS |
| ATTTCATCACCTCATGGTAA+TGG | 0.506040 | 1_2:+2386927 | Msa0049220:CDS |
| TGGTAATGGTGTACAAAGAA+TGG | 0.507522 | 1_2:+2386941 | Msa0049220:CDS |
| TCAAGCAATTATTGAATCGA+TGG | 0.507864 | 1_2:+2387130 | Msa0049220:CDS |
| TTGAGAGCTTTGTATACGCC+AGG | 0.508327 | 1_2:-2387011 | None:intergenic |
| ACAGCGTCTCCTGTCTTGAC+AGG | 0.513933 | 1_2:-2387401 | None:intergenic |
| AGGTACCTTTGAGTTACAAT+GGG | 0.518881 | 1_2:+2387942 | Msa0049220:CDS |
| ACCTATTTCAGTGAAGCACT+TGG | 0.523468 | 1_2:+2386966 | Msa0049220:CDS |
| GATGAAATGGTCTCCTCAGC+AGG | 0.533946 | 1_2:+2387470 | Msa0049220:CDS |
| ATCAGATTTATCCATTGCGC+TGG | 0.534751 | 1_2:-2387197 | None:intergenic |
| AAGGTACCTTTGAGTTACAA+TGG | 0.544427 | 1_2:+2387941 | Msa0049220:CDS |
| ATTGCGCTGGCTCGGAACAA+TGG | 0.551742 | 1_2:-2387184 | None:intergenic |
| TTTAATGGAGAGAATCGATC+GGG | 0.556728 | 1_2:+2387721 | Msa0049220:CDS |
| TCTCAGATTTCATCACCTCA+TGG | 0.558265 | 1_2:+2386921 | Msa0049220:CDS |
| TTCATTTGACAACCGAAGCA+GGG | 0.560755 | 1_2:+2387309 | Msa0049220:CDS |
| TATACATAGAGCAGCGCACA+TGG | 0.562664 | 1_2:+2387508 | Msa0049220:CDS |
| TACCTTTGAGTTACAATGGG+AGG | 0.570596 | 1_2:+2387945 | Msa0049220:CDS |
| GGCATGAGAAGCTCGAGCAA+TGG | 0.571455 | 1_2:+2387888 | Msa0049220:CDS |
| ATCGATGGAACTTGAAAAGG+TGG | 0.571637 | 1_2:+2387145 | Msa0049220:CDS |
| AAGAACATCATTACTTGTGA+GGG | 0.575874 | 1_2:+2387848 | Msa0049220:CDS |
| ATCCTCCCATTGTAACTCAA+AGG | 0.576632 | 1_2:-2387947 | None:intergenic |
| AAAGAACATCATTACTTGTG+AGG | 0.578365 | 1_2:+2387847 | Msa0049220:CDS |
| GATAGATGTCGCACCTGCTG+AGG | 0.593900 | 1_2:-2387483 | None:intergenic |
| TTGTGAGGGAGTCGACAGAA+AGG | 0.598299 | 1_2:+2387862 | Msa0049220:CDS |
| GTTCGCCATATCACTGGCTG+AGG | 0.598645 | 1_2:+2386787 | Msa0049220:CDS |
| TAGGTGCTTCACCTAAGATG+GGG | 0.607732 | 1_2:+2387618 | Msa0049220:CDS |
| ATTTAATGGAGAGAATCGAT+CGG | 0.609880 | 1_2:+2387720 | Msa0049220:CDS |
| AAGATAGTTAAACATTTACC+TGG | 0.616797 | 1_2:+2386993 | Msa0049220:CDS |
| ATTGTTCCGAGCCAGCGCAA+TGG | 0.617587 | 1_2:+2387186 | Msa0049220:CDS |
| CAAACTTTAAAGAAACGTCC+AGG | 0.618702 | 1_2:+2387221 | Msa0049220:CDS |
| GAGCAGCGCACATGGGTCAG+AGG | 0.620315 | 1_2:+2387516 | Msa0049220:CDS |
| GGAGACCATTTCATCATCAG+TGG | 0.644820 | 1_2:-2387462 | None:intergenic |
| GTCAGAGGACTTTCGCAGAG+TGG | 0.652841 | 1_2:+2387531 | Msa0049220:CDS |
| AGGGAGTCGACAGAAAGGAA+AGG | 0.657047 | 1_2:+2387867 | Msa0049220:CDS |
| TTCGCCATATCACTGGCTGA+GGG | 0.658373 | 1_2:+2386788 | Msa0049220:CDS |
| CTTTGTACACCATTACCATG+AGG | 0.671867 | 1_2:-2386936 | None:intergenic |
| ATACATAGAGCAGCGCACAT+GGG | 0.681588 | 1_2:+2387509 | Msa0049220:CDS |
| ACTTTAAAGAAACGTCCAGG+AGG | 0.710882 | 1_2:+2387224 | Msa0049220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGCATAAAAAATGCTGATAT+TGG | + | chr1_2:2386885-2386904 | Msa0049220:CDS | 25.0% |
| ! | AAGATAGTTAAACATTTACC+TGG | + | chr1_2:2386993-2387012 | Msa0049220:CDS | 25.0% |
| !!! | CATAGAAGTATTTTTGAACA+AGG | - | chr1_2:2387070-2387089 | None:intergenic | 25.0% |
| ! | AGGTATGAAAACTTCAAAAA+AGG | - | chr1_2:2387101-2387120 | None:intergenic | 25.0% |
| !! | AATTCCTGTAATTTTCAGAT+GGG | - | chr1_2:2387255-2387274 | None:intergenic | 25.0% |
| ! | ATTATTGGATTGAACTGTAA+AGG | - | chr1_2:2387347-2387366 | None:intergenic | 25.0% |
| !!! | TCTTCAAGTTTGCTAATTAT+TGG | - | chr1_2:2387362-2387381 | None:intergenic | 25.0% |
| ! | TCAGTAATCACTAAAAGTTT+CGG | - | chr1_2:2387674-2387693 | None:intergenic | 25.0% |
| ! | TCTGAATGGATGTAATTTAA+TGG | + | chr1_2:2387706-2387725 | Msa0049220:CDS | 25.0% |
| ! | ATTCAAAGACTTAAAATTGC+TGG | + | chr1_2:2387911-2387930 | Msa0049220:CDS | 25.0% |
| ! | TAAAATTGCTGGATTTATGA+AGG | + | chr1_2:2387922-2387941 | Msa0049220:CDS | 25.0% |
| ! | AGCATAAAAAATGCTGATAT+TGG | + | chr1_2:2386885-2386904 | Msa0049220:CDS | 25.0% |
| ! | AAGATAGTTAAACATTTACC+TGG | + | chr1_2:2386993-2387012 | Msa0049220:CDS | 25.0% |
| !!! | CATAGAAGTATTTTTGAACA+AGG | - | chr1_2:2387070-2387089 | None:intergenic | 25.0% |
| ! | AGGTATGAAAACTTCAAAAA+AGG | - | chr1_2:2387101-2387120 | None:intergenic | 25.0% |
| !! | AATTCCTGTAATTTTCAGAT+GGG | - | chr1_2:2387255-2387274 | None:intergenic | 25.0% |
| ! | ATTATTGGATTGAACTGTAA+AGG | - | chr1_2:2387347-2387366 | None:intergenic | 25.0% |
| !!! | TCTTCAAGTTTGCTAATTAT+TGG | - | chr1_2:2387362-2387381 | None:intergenic | 25.0% |
| ! | TCAGTAATCACTAAAAGTTT+CGG | - | chr1_2:2387674-2387693 | None:intergenic | 25.0% |
| ! | TCTGAATGGATGTAATTTAA+TGG | + | chr1_2:2387706-2387725 | Msa0049220:CDS | 25.0% |
| ! | ATTCAAAGACTTAAAATTGC+TGG | + | chr1_2:2387911-2387930 | Msa0049220:CDS | 25.0% |
| ! | TAAAATTGCTGGATTTATGA+AGG | + | chr1_2:2387922-2387941 | Msa0049220:CDS | 25.0% |
| ! | ATTTTGCACACTCAATAAGA+GGG | - | chr1_2:2386851-2386870 | None:intergenic | 30.0% |
| ! | TGAAGATGATGATATTTTCG+AGG | - | chr1_2:2387039-2387058 | None:intergenic | 30.0% |
| !! | TAATTGCTTGATTTGTGATC+AGG | - | chr1_2:2387121-2387140 | None:intergenic | 30.0% |
| TCAAGCAATTATTGAATCGA+TGG | + | chr1_2:2387130-2387149 | Msa0049220:CDS | 30.0% | |
| ! | ATTCCTGTAATTTTCAGATG+GGG | - | chr1_2:2387254-2387273 | None:intergenic | 30.0% |
| ! | GAATTCCTGTAATTTTCAGA+TGG | - | chr1_2:2387256-2387275 | None:intergenic | 30.0% |
| !!! | GCATTATCACCTCTTTTTTT+AGG | + | chr1_2:2387599-2387618 | Msa0049220:CDS | 30.0% |
| ! | ACTTTTAGTGATTACTGAAC+AGG | + | chr1_2:2387676-2387695 | Msa0049220:CDS | 30.0% |
| ATTTAATGGAGAGAATCGAT+CGG | + | chr1_2:2387720-2387739 | Msa0049220:CDS | 30.0% | |
| AAAGAACATCATTACTTGTG+AGG | + | chr1_2:2387847-2387866 | Msa0049220:CDS | 30.0% | |
| AAGAACATCATTACTTGTGA+GGG | + | chr1_2:2387848-2387867 | Msa0049220:CDS | 30.0% | |
| ATGATTGTTTACTTGTTTGC+TGG | + | chr1_2:2388026-2388045 | Msa0049220:CDS | 30.0% | |
| ! | ATTTTGCACACTCAATAAGA+GGG | - | chr1_2:2386851-2386870 | None:intergenic | 30.0% |
| ! | TGAAGATGATGATATTTTCG+AGG | - | chr1_2:2387039-2387058 | None:intergenic | 30.0% |
| !! | TAATTGCTTGATTTGTGATC+AGG | - | chr1_2:2387121-2387140 | None:intergenic | 30.0% |
| TCAAGCAATTATTGAATCGA+TGG | + | chr1_2:2387130-2387149 | Msa0049220:CDS | 30.0% | |
| ! | ATTCCTGTAATTTTCAGATG+GGG | - | chr1_2:2387254-2387273 | None:intergenic | 30.0% |
| ! | GAATTCCTGTAATTTTCAGA+TGG | - | chr1_2:2387256-2387275 | None:intergenic | 30.0% |
| !!! | GCATTATCACCTCTTTTTTT+AGG | + | chr1_2:2387599-2387618 | Msa0049220:CDS | 30.0% |
| ! | ACTTTTAGTGATTACTGAAC+AGG | + | chr1_2:2387676-2387695 | Msa0049220:CDS | 30.0% |
| ATTTAATGGAGAGAATCGAT+CGG | + | chr1_2:2387720-2387739 | Msa0049220:CDS | 30.0% | |
| AAAGAACATCATTACTTGTG+AGG | + | chr1_2:2387847-2387866 | Msa0049220:CDS | 30.0% | |
| AAGAACATCATTACTTGTGA+GGG | + | chr1_2:2387848-2387867 | Msa0049220:CDS | 30.0% | |
| ATGATTGTTTACTTGTTTGC+TGG | + | chr1_2:2388026-2388045 | Msa0049220:CDS | 30.0% | |
| ! | CATTTTGCACACTCAATAAG+AGG | - | chr1_2:2386852-2386871 | None:intergenic | 35.0% |
| ATTTCATCACCTCATGGTAA+TGG | + | chr1_2:2386927-2386946 | Msa0049220:CDS | 35.0% | |
| !! | TGGTAATGGTGTACAAAGAA+TGG | + | chr1_2:2386941-2386960 | Msa0049220:CDS | 35.0% |
| TGAATCGATGGAACTTGAAA+AGG | + | chr1_2:2387142-2387161 | Msa0049220:CDS | 35.0% | |
| ! | CAAACTTTAAAGAAACGTCC+AGG | + | chr1_2:2387221-2387240 | Msa0049220:CDS | 35.0% |
| AAAATCCAAAATCCCTGCTT+CGG | - | chr1_2:2387324-2387343 | None:intergenic | 35.0% | |
| ! | AAGAGGTGATAATGCTGAAT+CGG | - | chr1_2:2387594-2387613 | None:intergenic | 35.0% |
| TTAAGAAAGATCCCCATCTT+AGG | - | chr1_2:2387632-2387651 | None:intergenic | 35.0% | |
| GAACAGGAATCAAATCTGAA+TGG | + | chr1_2:2387692-2387711 | Msa0049220:CDS | 35.0% | |
| TTTAATGGAGAGAATCGATC+GGG | + | chr1_2:2387721-2387740 | Msa0049220:CDS | 35.0% | |
| !! | GATCGGGCATTGTATTTTTA+CGG | + | chr1_2:2387737-2387756 | Msa0049220:CDS | 35.0% |
| ! | AAGGTACCTTTGAGTTACAA+TGG | + | chr1_2:2387941-2387960 | Msa0049220:CDS | 35.0% |
| ! | AGGTACCTTTGAGTTACAAT+GGG | + | chr1_2:2387942-2387961 | Msa0049220:CDS | 35.0% |
| !!! | CAGACCACTTTTTTCTGTAT+CGG | + | chr1_2:2388054-2388073 | Msa0049220:CDS | 35.0% |
| ! | CATTTTGCACACTCAATAAG+AGG | - | chr1_2:2386852-2386871 | None:intergenic | 35.0% |
| ATTTCATCACCTCATGGTAA+TGG | + | chr1_2:2386927-2386946 | Msa0049220:CDS | 35.0% | |
| !! | TGGTAATGGTGTACAAAGAA+TGG | + | chr1_2:2386941-2386960 | Msa0049220:CDS | 35.0% |
| TGAATCGATGGAACTTGAAA+AGG | + | chr1_2:2387142-2387161 | Msa0049220:CDS | 35.0% | |
| ! | CAAACTTTAAAGAAACGTCC+AGG | + | chr1_2:2387221-2387240 | Msa0049220:CDS | 35.0% |
| AAAATCCAAAATCCCTGCTT+CGG | - | chr1_2:2387324-2387343 | None:intergenic | 35.0% | |
| ! | AAGAGGTGATAATGCTGAAT+CGG | - | chr1_2:2387594-2387613 | None:intergenic | 35.0% |
| TTAAGAAAGATCCCCATCTT+AGG | - | chr1_2:2387632-2387651 | None:intergenic | 35.0% | |
| GAACAGGAATCAAATCTGAA+TGG | + | chr1_2:2387692-2387711 | Msa0049220:CDS | 35.0% | |
| TTTAATGGAGAGAATCGATC+GGG | + | chr1_2:2387721-2387740 | Msa0049220:CDS | 35.0% | |
| !! | GATCGGGCATTGTATTTTTA+CGG | + | chr1_2:2387737-2387756 | Msa0049220:CDS | 35.0% |
| ! | AAGGTACCTTTGAGTTACAA+TGG | + | chr1_2:2387941-2387960 | Msa0049220:CDS | 35.0% |
| ! | AGGTACCTTTGAGTTACAAT+GGG | + | chr1_2:2387942-2387961 | Msa0049220:CDS | 35.0% |
| !!! | CAGACCACTTTTTTCTGTAT+CGG | + | chr1_2:2388054-2388073 | Msa0049220:CDS | 35.0% |
| CACTCAATAAGAGGGATCAT+TGG | - | chr1_2:2386843-2386862 | None:intergenic | 40.0% | |
| TGTGCAAAATGTGTTGCATC+TGG | + | chr1_2:2386861-2386880 | Msa0049220:CDS | 40.0% | |
| TCTCAGATTTCATCACCTCA+TGG | + | chr1_2:2386921-2386940 | Msa0049220:CDS | 40.0% | |
| CTTTGTACACCATTACCATG+AGG | - | chr1_2:2386939-2386958 | None:intergenic | 40.0% | |
| ! | ACCTATTTCAGTGAAGCACT+TGG | + | chr1_2:2386966-2386985 | Msa0049220:CDS | 40.0% |
| TCCAAGTGCTTCACTGAAAT+AGG | - | chr1_2:2386970-2386989 | None:intergenic | 40.0% | |
| ATCGATGGAACTTGAAAAGG+TGG | + | chr1_2:2387145-2387164 | Msa0049220:CDS | 40.0% | |
| ATCAGATTTATCCATTGCGC+TGG | - | chr1_2:2387200-2387219 | None:intergenic | 40.0% | |
| ! | ACTTTAAAGAAACGTCCAGG+AGG | + | chr1_2:2387224-2387243 | Msa0049220:CDS | 40.0% |
| TTTCATTTGACAACCGAAGC+AGG | + | chr1_2:2387308-2387327 | Msa0049220:CDS | 40.0% | |
| TTCATTTGACAACCGAAGCA+GGG | + | chr1_2:2387309-2387328 | Msa0049220:CDS | 40.0% | |
| ! | TCTTGCCACTGATGATGAAA+TGG | + | chr1_2:2387457-2387476 | Msa0049220:CDS | 40.0% |
| ! | AGAGGTGATAATGCTGAATC+GGG | - | chr1_2:2387593-2387612 | None:intergenic | 40.0% |
| ! | GGTGAAGCACCTAAAAAAAG+AGG | - | chr1_2:2387611-2387630 | None:intergenic | 40.0% |
| TTTAGGTGCTTCACCTAAGA+TGG | + | chr1_2:2387616-2387635 | Msa0049220:CDS | 40.0% | |
| TTAGGTGCTTCACCTAAGAT+GGG | + | chr1_2:2387617-2387636 | Msa0049220:CDS | 40.0% | |
| ! | TACCTTTGAGTTACAATGGG+AGG | + | chr1_2:2387945-2387964 | Msa0049220:CDS | 40.0% |
| ATCCTCCCATTGTAACTCAA+AGG | - | chr1_2:2387950-2387969 | None:intergenic | 40.0% | |
| CACTCAATAAGAGGGATCAT+TGG | - | chr1_2:2386843-2386862 | None:intergenic | 40.0% | |
| TGTGCAAAATGTGTTGCATC+TGG | + | chr1_2:2386861-2386880 | Msa0049220:CDS | 40.0% | |
| TCTCAGATTTCATCACCTCA+TGG | + | chr1_2:2386921-2386940 | Msa0049220:CDS | 40.0% | |
| CTTTGTACACCATTACCATG+AGG | - | chr1_2:2386939-2386958 | None:intergenic | 40.0% | |
| ! | ACCTATTTCAGTGAAGCACT+TGG | + | chr1_2:2386966-2386985 | Msa0049220:CDS | 40.0% |
| TCCAAGTGCTTCACTGAAAT+AGG | - | chr1_2:2386970-2386989 | None:intergenic | 40.0% | |
| ATCGATGGAACTTGAAAAGG+TGG | + | chr1_2:2387145-2387164 | Msa0049220:CDS | 40.0% | |
| ATCAGATTTATCCATTGCGC+TGG | - | chr1_2:2387200-2387219 | None:intergenic | 40.0% | |
| ! | ACTTTAAAGAAACGTCCAGG+AGG | + | chr1_2:2387224-2387243 | Msa0049220:CDS | 40.0% |
| TTTCATTTGACAACCGAAGC+AGG | + | chr1_2:2387308-2387327 | Msa0049220:CDS | 40.0% | |
| TTCATTTGACAACCGAAGCA+GGG | + | chr1_2:2387309-2387328 | Msa0049220:CDS | 40.0% | |
| ! | TCTTGCCACTGATGATGAAA+TGG | + | chr1_2:2387457-2387476 | Msa0049220:CDS | 40.0% |
| ! | AGAGGTGATAATGCTGAATC+GGG | - | chr1_2:2387593-2387612 | None:intergenic | 40.0% |
| ! | GGTGAAGCACCTAAAAAAAG+AGG | - | chr1_2:2387611-2387630 | None:intergenic | 40.0% |
| TTTAGGTGCTTCACCTAAGA+TGG | + | chr1_2:2387616-2387635 | Msa0049220:CDS | 40.0% | |
| TTAGGTGCTTCACCTAAGAT+GGG | + | chr1_2:2387617-2387636 | Msa0049220:CDS | 40.0% | |
| ! | TACCTTTGAGTTACAATGGG+AGG | + | chr1_2:2387945-2387964 | Msa0049220:CDS | 40.0% |
| ATCCTCCCATTGTAACTCAA+AGG | - | chr1_2:2387950-2387969 | None:intergenic | 40.0% | |
| CAACTCAGCTGTTATGCACT+AGG | + | chr1_2:2386765-2386784 | Msa0049220:CDS | 45.0% | |
| AATTCCCTCAGCCAGTGATA+TGG | - | chr1_2:2386795-2386814 | None:intergenic | 45.0% | |
| ! | TTGAGAGCTTTGTATACGCC+AGG | - | chr1_2:2387014-2387033 | None:intergenic | 45.0% |
| !! | ATTTATCCATTGCGCTGGCT+CGG | - | chr1_2:2387195-2387214 | None:intergenic | 45.0% |
| ! | CCTGTAATTTTCAGATGGGG+CGG | - | chr1_2:2387251-2387270 | None:intergenic | 45.0% |
| GAAAACTTGCCTGTCAAGAC+AGG | + | chr1_2:2387392-2387411 | Msa0049220:CDS | 45.0% | |
| GGAGACCATTTCATCATCAG+TGG | - | chr1_2:2387465-2387484 | None:intergenic | 45.0% | |
| TATACATAGAGCAGCGCACA+TGG | + | chr1_2:2387508-2387527 | Msa0049220:CDS | 45.0% | |
| ATACATAGAGCAGCGCACAT+GGG | + | chr1_2:2387509-2387528 | Msa0049220:CDS | 45.0% | |
| TAGGTGCTTCACCTAAGATG+GGG | + | chr1_2:2387618-2387637 | Msa0049220:CDS | 45.0% | |
| !!! | CGGTTCACTTTTTGACTGCT+TGG | + | chr1_2:2387757-2387776 | Msa0049220:CDS | 45.0% |
| ! | AAACTCGAGAGCATGCTTCT+TGG | + | chr1_2:2387815-2387834 | Msa0049220:CDS | 45.0% |
| CAGGCCGATACAGAAAAAAG+TGG | - | chr1_2:2388061-2388080 | None:intergenic | 45.0% | |
| !!! | CACTTTTTTCTGTATCGGCC+TGG | + | chr1_2:2388059-2388078 | Msa0049220:CDS | 45.0% |
| ! | CTGTATCGGCCTGGAAATTT+AGG | + | chr1_2:2388068-2388087 | Msa0049220:CDS | 45.0% |
| CAACTCAGCTGTTATGCACT+AGG | + | chr1_2:2386765-2386784 | Msa0049220:CDS | 45.0% | |
| AATTCCCTCAGCCAGTGATA+TGG | - | chr1_2:2386795-2386814 | None:intergenic | 45.0% | |
| ! | TTGAGAGCTTTGTATACGCC+AGG | - | chr1_2:2387014-2387033 | None:intergenic | 45.0% |
| !! | ATTTATCCATTGCGCTGGCT+CGG | - | chr1_2:2387195-2387214 | None:intergenic | 45.0% |
| ! | CCTGTAATTTTCAGATGGGG+CGG | - | chr1_2:2387251-2387270 | None:intergenic | 45.0% |
| GAAAACTTGCCTGTCAAGAC+AGG | + | chr1_2:2387392-2387411 | Msa0049220:CDS | 45.0% | |
| GGAGACCATTTCATCATCAG+TGG | - | chr1_2:2387465-2387484 | None:intergenic | 45.0% | |
| TATACATAGAGCAGCGCACA+TGG | + | chr1_2:2387508-2387527 | Msa0049220:CDS | 45.0% | |
| ATACATAGAGCAGCGCACAT+GGG | + | chr1_2:2387509-2387528 | Msa0049220:CDS | 45.0% | |
| TAGGTGCTTCACCTAAGATG+GGG | + | chr1_2:2387618-2387637 | Msa0049220:CDS | 45.0% | |
| !!! | CGGTTCACTTTTTGACTGCT+TGG | + | chr1_2:2387757-2387776 | Msa0049220:CDS | 45.0% |
| ! | AAACTCGAGAGCATGCTTCT+TGG | + | chr1_2:2387815-2387834 | Msa0049220:CDS | 45.0% |
| CAGGCCGATACAGAAAAAAG+TGG | - | chr1_2:2388061-2388080 | None:intergenic | 45.0% | |
| !!! | CACTTTTTTCTGTATCGGCC+TGG | + | chr1_2:2388059-2388078 | Msa0049220:CDS | 45.0% |
| ! | CTGTATCGGCCTGGAAATTT+AGG | + | chr1_2:2388068-2388087 | Msa0049220:CDS | 45.0% |
| CACTAGGTTCGCCATATCAC+TGG | + | chr1_2:2386781-2386800 | Msa0049220:CDS | 50.0% | |
| ! | TTCGCCATATCACTGGCTGA+GGG | + | chr1_2:2386788-2386807 | Msa0049220:CDS | 50.0% |
| CCGCCCCATCTGAAAATTAC+AGG | + | chr1_2:2387248-2387267 | Msa0049220:CDS | 50.0% | |
| ! | GACAACCGAAGCAGGGATTT+TGG | + | chr1_2:2387316-2387335 | Msa0049220:CDS | 50.0% |
| GATGAAATGGTCTCCTCAGC+AGG | + | chr1_2:2387470-2387489 | Msa0049220:CDS | 50.0% | |
| TTGTGAGGGAGTCGACAGAA+AGG | + | chr1_2:2387862-2387881 | Msa0049220:CDS | 50.0% | |
| AGGGAGTCGACAGAAAGGAA+AGG | + | chr1_2:2387867-2387886 | Msa0049220:CDS | 50.0% | |
| CACTAGGTTCGCCATATCAC+TGG | + | chr1_2:2386781-2386800 | Msa0049220:CDS | 50.0% | |
| ! | TTCGCCATATCACTGGCTGA+GGG | + | chr1_2:2386788-2386807 | Msa0049220:CDS | 50.0% |
| CCGCCCCATCTGAAAATTAC+AGG | + | chr1_2:2387248-2387267 | Msa0049220:CDS | 50.0% | |
| ! | GACAACCGAAGCAGGGATTT+TGG | + | chr1_2:2387316-2387335 | Msa0049220:CDS | 50.0% |
| GATGAAATGGTCTCCTCAGC+AGG | + | chr1_2:2387470-2387489 | Msa0049220:CDS | 50.0% | |
| TTGTGAGGGAGTCGACAGAA+AGG | + | chr1_2:2387862-2387881 | Msa0049220:CDS | 50.0% | |
| AGGGAGTCGACAGAAAGGAA+AGG | + | chr1_2:2387867-2387886 | Msa0049220:CDS | 50.0% | |
| ! | GTTCGCCATATCACTGGCTG+AGG | + | chr1_2:2386787-2386806 | Msa0049220:CDS | 55.0% |
| !! | ATTGCGCTGGCTCGGAACAA+TGG | - | chr1_2:2387187-2387206 | None:intergenic | 55.0% |
| ATTGTTCCGAGCCAGCGCAA+TGG | + | chr1_2:2387186-2387205 | Msa0049220:CDS | 55.0% | |
| ACAGCGTCTCCTGTCTTGAC+AGG | - | chr1_2:2387404-2387423 | None:intergenic | 55.0% | |
| GATAGATGTCGCACCTGCTG+AGG | - | chr1_2:2387486-2387505 | None:intergenic | 55.0% | |
| GTCAGAGGACTTTCGCAGAG+TGG | + | chr1_2:2387531-2387550 | Msa0049220:CDS | 55.0% | |
| GGCATGAGAAGCTCGAGCAA+TGG | + | chr1_2:2387888-2387907 | Msa0049220:CDS | 55.0% | |
| ! | GTTCGCCATATCACTGGCTG+AGG | + | chr1_2:2386787-2386806 | Msa0049220:CDS | 55.0% |
| !! | ATTGCGCTGGCTCGGAACAA+TGG | - | chr1_2:2387187-2387206 | None:intergenic | 55.0% |
| ATTGTTCCGAGCCAGCGCAA+TGG | + | chr1_2:2387186-2387205 | Msa0049220:CDS | 55.0% | |
| ACAGCGTCTCCTGTCTTGAC+AGG | - | chr1_2:2387404-2387423 | None:intergenic | 55.0% | |
| GATAGATGTCGCACCTGCTG+AGG | - | chr1_2:2387486-2387505 | None:intergenic | 55.0% | |
| GTCAGAGGACTTTCGCAGAG+TGG | + | chr1_2:2387531-2387550 | Msa0049220:CDS | 55.0% | |
| GGCATGAGAAGCTCGAGCAA+TGG | + | chr1_2:2387888-2387907 | Msa0049220:CDS | 55.0% | |
| TTCAGATGGGGCGGACCTCC+TGG | - | chr1_2:2387242-2387261 | None:intergenic | 65.0% | |
| GAGCAGCGCACATGGGTCAG+AGG | + | chr1_2:2387516-2387535 | Msa0049220:CDS | 65.0% | |
| TTCAGATGGGGCGGACCTCC+TGG | - | chr1_2:2387242-2387261 | None:intergenic | 65.0% | |
| GAGCAGCGCACATGGGTCAG+AGG | + | chr1_2:2387516-2387535 | Msa0049220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 2386762 | 2388093 | 2386762 | ID=Msa0049220;Name=Msa0049220 |
| chr1_2 | mRNA | 2386762 | 2388093 | 2386762 | ID=Msa0049220-mRNA-1;Parent=Msa0049220;Name=Msa0049220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|443 |
| chr1_2 | exon | 2386762 | 2388093 | 2386762 | ID=Msa0049220-mRNA-1:exon:465;Parent=Msa0049220-mRNA-1 |
| chr1_2 | CDS | 2386762 | 2388093 | 2386762 | ID=Msa0049220-mRNA-1:cds;Parent=Msa0049220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
