AlfalfaGEDB | Msa0049440

M. sativa cultivar zhongmu-4 / Msa0049440

KEGG: -
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049440	XP_013442501.2	93.155	336	22	1	1	336	1	335	0.0	646

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049440	sp\|Q9SND6\|M3K20_ARATH	50.696	359	137	7	1	336	1	342	4.05e-113	335

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049440	A0A396IBF6	93.155	336	22	1	1	336	1	335	0.0	646

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049440	MtrunA17_Chr4g0052981	93.155	336	22	1	1	336	1	335	0.0	646
Msa0049440	MtrunA17_Chr8g0375141	91.071	336	29	1	1	336	40	374	0.0	630
Msa0049440	MtrunA17_Chr4g0052961	90.774	336	30	1	1	336	38	372	0.0	630
Msa0049440	MtrunA17_Chr5g0402091	56.818	352	132	5	2	336	3	351	6.60e-137	392
Msa0049440	MtrunA17_Chr5g0402111	60.148	271	100	4	1	266	1	268	7.28e-114	332
Msa0049440	MtrunA17_Chr2g0288841	38.824	340	190	10	1	336	3	328	7.44e-67	216
Msa0049440	MtrunA17_Chr4g0025041	38.827	358	170	14	1	336	1	331	2.75e-62	203
Msa0049440	MtrunA17_Chr2g0322401	37.026	343	194	11	1	336	3	330	1.90e-60	199
Msa0049440	MtrunA17_Chr2g0276831	38.380	284	146	8	2	260	9	288	6.43e-58	191
Msa0049440	MtrunA17_Chr3g0130151	38.662	269	146	7	3	262	244	502	1.04e-47	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049440	AT4G36950.1	54.571	350	131	7	1	336	1	336	3.30e-124	360
Msa0049440	AT5G67080.1	50.138	363	135	9	1	336	1	344	2.07e-114	335
Msa0049440	AT3G50310.1	50.696	359	137	7	1	336	1	342	4.11e-114	335
Msa0049440	AT5G55090.1	41.026	351	180	9	2	336	5	344	1.77e-75	239
Msa0049440	AT5G55090.2	41.026	351	180	9	2	336	67	406	6.96e-75	239
Msa0049440	AT4G26890.1	38.968	349	189	10	1	336	3	340	1.74e-65	213
Msa0049440	AT2G32510.1	37.536	349	202	7	1	336	1	346	1.94e-64	208
Msa0049440	AT1G05100.1	40.514	311	165	8	1	300	1	302	1.76e-59	194
Msa0049440	AT1G07150.1	38.372	344	181	14	3	336	23	345	3.96e-58	195
Msa0049440	AT1G07150.2	38.372	344	181	14	3	336	9	331	4.14e-58	195

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Find 76 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTCTTCATCAACT+AGG	0.565944	1_2:+2785546	Msa0049440:CDS
AACACATTCGTTGTTACACG+AGG	0.639195	1_2:+2785712	Msa0049440:CDS
AACTGAAACTCAATGGTGGC+CGG	0.540346	1_2:+2785679	Msa0049440:CDS
AATCGGAAGACTCAAATCAA+TGG	0.490474	1_2:+2786282	Msa0049440:CDS
ACAACAATTGTAAGATGGAT+TGG	0.388405	1_2:+2785391	None:intergenic
ACCATTGAGTTTCAGTTGAT+CGG	0.453284	1_2:-2785673	None:intergenic
ACTCAATGGTGGCCGGATAC+CGG	0.494537	1_2:+2785686	Msa0049440:CDS
AGGAAAACCAGCTTGGAATT+TGG	0.241366	1_2:+2785992	Msa0049440:CDS
AGGGCCGATGAGTAGTTGGT+CGG	0.659327	1_2:+2786364	Msa0049440:CDS
AGTGGAATATGAATTTCCAA+TGG	0.579944	1_2:-2785469	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGGAATATGAATTTCCAAT+GGG	-	chr1_2:2785471-2785490	None:intergenic	30.0%
AGTGGAATATGAATTTCCAA+TGG	-	chr1_2:2785472-2785491	None:intergenic	30.0%
AAACATGTTCTTCATCAACT+AGG	+	chr1_2:2785546-2785565	Msa0049440:CDS	30.0%
GATGATTATACTTTCGAGAA+TGG	+	chr1_2:2785600-2785619	Msa0049440:CDS	30.0%
TGAAAGATCCAAGAAAAAGA+TGG	+	chr1_2:2786129-2786148	Msa0049440:CDS	30.0%
GTGGAATATGAATTTCCAAT+GGG	-	chr1_2:2785471-2785490	None:intergenic	30.0%
AGTGGAATATGAATTTCCAA+TGG	-	chr1_2:2785472-2785491	None:intergenic	30.0%
AAACATGTTCTTCATCAACT+AGG	+	chr1_2:2785546-2785565	Msa0049440:CDS	30.0%
GATGATTATACTTTCGAGAA+TGG	+	chr1_2:2785600-2785619	Msa0049440:CDS	30.0%
TGAAAGATCCAAGAAAAAGA+TGG	+	chr1_2:2786129-2786148	Msa0049440:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	2785405	2786415	2785405	ID=Msa0049440;Name=Msa0049440
chr1_2	mRNA	2785405	2786415	2785405	ID=Msa0049440-mRNA-1;Parent=Msa0049440;Name=Msa0049440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|336
chr1_2	exon	2785405	2786415	2785405	ID=Msa0049440-mRNA-1:exon:568;Parent=Msa0049440-mRNA-1
chr1_2	CDS	2785405	2786415	2785405	ID=Msa0049440-mRNA-1:cds;Parent=Msa0049440-mRNA-1

Gene Sequence

>Msa0049440

ATGGATTGGGTACGAGGAGAAACAGTTGGTAGAGGAAGCTTTGCAACTGTTAATTTAGTTATTCCCATTGGAAATTCATATTCCACTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCGTCTTCACTCAAAAACGAGAAACATGTTCTTCATCAACTAGGTTCTTGTCAAAGAATTATTCCTTGTTTCGGAGATGATTATACTTTCGAGAATGGCAAAGAGTATTACAATTTATTTCTCGAATATGCCTCCGCAGGAACGCTCTCCGATCAACTGAAACTCAATGGTGGCCGGATACCGGAGCAACACATTCGTTGTTACACGAGGTCAATCGTTGAGGGTCTTGATCATATTCATCGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAATATTTTGGTATTCAATGATGGTGAAATCAAAATTGCTGATTTTGGCCTTGCCAAGAAAACAGGGCAAAAACAGAGTTTTGAATGCAGAGGAACTCCACTTTTTATGTCACCGGAATCGGTAAACCACGGCGAGTATGAATCTCCGGCGGATATATGGGCACTTGGGTGTGCAGTGGTGGAAATGGTAACAGGAAAACCAGCTTGGAATTTGGAGAAAGATTCAAATATATGGTCGTTGTTGCTTCGAATTGGTGCCGGAGAAGAATCGCCGTTGATACCCGAAGAATTATCAAAAGAAGGAAAAGATTTTGTAAAGAAGTGTTTTGTGAAAGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTGTTGAAGAATTGAAGAATGTTGATGAGTCGTCACCAAGAAATCACTTTGATTTCAATGATTGGGTTTCTAGTGTTAATGATTCAGTTCCAAATTCACCGGAATCGGAAGACTCAAATCAATGGGATTTTGATTCTAGTTTTGGTTCCGCGGTGGACCGGCTCCGGCAACTTGTGACTGATCAAGGGCCGATGAGTAGTTGGTCGGAATCAGATAGTTGGATCAGTGTTAGGTGA

Protein sequence

>Msa0049440

MDWVRGETVGRGSFATVNLVIPIGNSYSTPTAVKTSEVSTSSSLKNEKHVLHQLGSCQRIIPCFGDDYTFENGKEYYNLFLEYASAGTLSDQLKLNGGRIPEQHIRCYTRSIVEGLDHIHRNGFVHCDIKLQNILVFNDGEIKIADFGLAKKTGQKQSFECRGTPLFMSPESVNHGEYESPADIWALGCAVVEMVTGKPAWNLEKDSNIWSLLLRIGAGEESPLIPEELSKEGKDFVKKCFVKDPRKRWTAEMLLNHPFVEELKNVDESSPRNHFDFNDWVSSVNDSVPNSPESEDSNQWDFDSSFGSAVDRLRQLVTDQGPMSSWSESDSWISVR*