Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049700 | sp|O65924|Y2921_ARATH | 36.388 | 371 | 120 | 10 | 1 | 262 | 284 | 647 | 2.18e-55 | 194 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049700 | G7IHW2 | 62.155 | 362 | 32 | 5 | 1 | 262 | 268 | 624 | 8.40e-135 | 407 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049700 | MtrunA17_Chr2g0330591 | 56.873 | 371 | 45 | 6 | 1 | 262 | 282 | 646 | 3.63e-125 | 376 |
Msa0049700 | MtrunA17_Chr2g0330631 | 71.519 | 158 | 16 | 1 | 134 | 262 | 2 | 159 | 2.04e-72 | 222 |
Msa0049700 | MtrunA17_Chr2g0330621 | 71.875 | 160 | 15 | 3 | 1 | 135 | 49 | 203 | 5.14e-71 | 216 |
Msa0049700 | MtrunA17_Chr8g0341011 | 33.871 | 372 | 126 | 12 | 1 | 262 | 281 | 642 | 2.26e-49 | 174 |
Msa0049700 | MtrunA17_Chr8g0341151 | 33.151 | 365 | 131 | 9 | 2 | 262 | 277 | 632 | 2.45e-49 | 173 |
Msa0049700 | MtrunA17_Chr8g0340931 | 33.784 | 370 | 127 | 11 | 1 | 262 | 280 | 639 | 2.90e-49 | 173 |
Msa0049700 | MtrunA17_Chr8g0340891 | 32.329 | 365 | 133 | 8 | 1 | 262 | 284 | 637 | 1.87e-48 | 171 |
Msa0049700 | MtrunA17_Chr8g0340911 | 33.333 | 366 | 132 | 9 | 1 | 262 | 282 | 639 | 3.79e-48 | 170 |
Msa0049700 | MtrunA17_Chr8g0340871 | 31.903 | 373 | 133 | 9 | 1 | 262 | 286 | 648 | 3.13e-46 | 165 |
Msa0049700 | MtrunA17_Chr8g0347661 | 31.608 | 367 | 136 | 9 | 1 | 262 | 288 | 644 | 4.46e-45 | 161 |
Msa0049700 | MtrunA17_Chr8g0340881 | 33.067 | 375 | 121 | 13 | 2 | 262 | 285 | 643 | 1.30e-42 | 154 |
Msa0049700 | MtrunA17_Chr6g0487571 | 30.663 | 362 | 148 | 8 | 1 | 262 | 285 | 643 | 7.24e-42 | 152 |
Msa0049700 | MtrunA17_Chr8g0358831 | 31.492 | 362 | 135 | 8 | 6 | 262 | 254 | 607 | 1.11e-38 | 143 |
Msa0049700 | MtrunA17_Chr8g0341101 | 29.775 | 356 | 150 | 9 | 2 | 262 | 339 | 689 | 1.17e-37 | 140 |
Msa0049700 | MtrunA17_Chr8g0341361 | 34.586 | 266 | 76 | 6 | 89 | 262 | 1 | 260 | 2.08e-33 | 126 |
Msa0049700 | MtrunA17_Chr8g0341061 | 30.878 | 353 | 150 | 10 | 2 | 262 | 336 | 686 | 2.83e-33 | 127 |
Msa0049700 | MtrunA17_Chr8g0341111 | 28.775 | 351 | 135 | 9 | 18 | 262 | 211 | 552 | 3.51e-30 | 119 |
Msa0049700 | MtrunA17_Chr8g0340941 | 30.597 | 268 | 92 | 9 | 1 | 189 | 280 | 532 | 8.15e-26 | 105 |
Msa0049700 | MtrunA17_Chr8g0341231 | 36.571 | 175 | 75 | 5 | 1 | 144 | 302 | 471 | 1.20e-23 | 99.8 |
Msa0049700 | MtrunA17_Chr8g0340971 | 35.333 | 150 | 65 | 4 | 141 | 262 | 17 | 162 | 4.16e-20 | 87.0 |
Msa0049700 | MtrunA17_Chr8g0341131 | 52.778 | 72 | 34 | 0 | 191 | 262 | 19 | 90 | 5.71e-19 | 81.6 |
Msa0049700 | MtrunA17_Chr2g0330691 | 86.364 | 44 | 6 | 0 | 219 | 262 | 1 | 44 | 6.43e-19 | 82.8 |
Msa0049700 | MtrunA17_Chr8g0341221 | 54.167 | 72 | 33 | 0 | 191 | 262 | 39 | 110 | 1.00e-17 | 79.3 |
Msa0049700 | MtrunA17_Chr8g0341081 | 51.389 | 72 | 35 | 0 | 191 | 262 | 49 | 120 | 1.71e-17 | 80.5 |
Msa0049700 | MtrunA17_Chr8g0341251 | 51.389 | 72 | 35 | 0 | 191 | 262 | 50 | 121 | 3.24e-17 | 79.7 |
Msa0049700 | MtrunA17_Chr8g0340951 | 50.000 | 72 | 36 | 0 | 191 | 262 | 44 | 115 | 1.08e-16 | 76.6 |
Msa0049700 | MtrunA17_Chr2g0330701 | 76.744 | 43 | 10 | 0 | 147 | 189 | 29 | 71 | 1.41e-16 | 72.8 |
Msa0049700 | MtrunA17_Chr5g0423891 | 31.746 | 189 | 96 | 4 | 103 | 262 | 51 | 235 | 4.59e-13 | 68.6 |
Msa0049700 | MtrunA17_Chr7g0263591 | 22.365 | 389 | 174 | 12 | 2 | 262 | 288 | 676 | 8.54e-13 | 68.2 |
Msa0049700 | MtrunA17_Chr5g0411631 | 34.409 | 93 | 61 | 0 | 170 | 262 | 576 | 668 | 2.93e-12 | 66.2 |
Msa0049700 | MtrunA17_Chr6g0485721 | 36.047 | 86 | 55 | 0 | 176 | 261 | 84 | 169 | 3.63e-11 | 62.8 |
Msa0049700 | MtrunA17_Chr7g0219671 | 38.824 | 85 | 50 | 1 | 180 | 262 | 521 | 605 | 4.62e-11 | 62.8 |
Msa0049700 | MtrunA17_Chr8g0365691 | 41.429 | 70 | 41 | 0 | 193 | 262 | 314 | 383 | 6.11e-11 | 62.0 |
Msa0049700 | MtrunA17_Chr7g0219651 | 39.535 | 86 | 50 | 1 | 179 | 262 | 1507 | 1592 | 6.17e-11 | 62.8 |
Msa0049700 | MtrunA17_Chr7g0219781 | 38.824 | 85 | 50 | 1 | 180 | 262 | 524 | 608 | 6.51e-11 | 62.4 |
Msa0049700 | MtrunA17_Chr7g0219631 | 38.750 | 80 | 47 | 1 | 180 | 257 | 50 | 129 | 8.07e-11 | 58.5 |
Msa0049700 | MtrunA17_Chr7g0219571 | 31.973 | 147 | 82 | 4 | 118 | 262 | 477 | 607 | 8.18e-11 | 62.0 |
Msa0049700 | MtrunA17_Chr3g0123141 | 41.538 | 65 | 38 | 0 | 191 | 255 | 609 | 673 | 9.51e-11 | 62.0 |
Msa0049700 | MtrunA17_Chr7g0219601 | 39.535 | 86 | 50 | 1 | 179 | 262 | 506 | 591 | 9.82e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049700 | AT2G19210.1 | 36.388 | 371 | 120 | 10 | 1 | 262 | 284 | 647 | 2.21e-56 | 194 |
Msa0049700 | AT1G51880.2 | 36.585 | 369 | 119 | 9 | 1 | 262 | 295 | 655 | 2.04e-53 | 186 |
Msa0049700 | AT1G51880.1 | 36.585 | 369 | 119 | 9 | 1 | 262 | 277 | 637 | 2.07e-53 | 185 |
Msa0049700 | AT1G51870.1 | 36.527 | 334 | 131 | 7 | 1 | 262 | 278 | 602 | 3.68e-53 | 184 |
Msa0049700 | AT2G19230.2 | 34.540 | 359 | 136 | 11 | 1 | 262 | 284 | 640 | 1.73e-52 | 183 |
Msa0049700 | AT1G51880.3 | 35.809 | 377 | 119 | 9 | 1 | 262 | 295 | 663 | 2.46e-52 | 182 |
Msa0049700 | AT2G19230.1 | 34.444 | 360 | 136 | 11 | 1 | 262 | 284 | 641 | 4.02e-52 | 182 |
Msa0049700 | AT1G51805.2 | 32.134 | 389 | 127 | 9 | 1 | 262 | 247 | 625 | 7.93e-51 | 178 |
Msa0049700 | AT1G51805.1 | 32.134 | 389 | 127 | 9 | 1 | 262 | 271 | 649 | 8.31e-51 | 178 |
Msa0049700 | AT1G51890.5 | 32.973 | 370 | 139 | 6 | 1 | 262 | 1 | 369 | 5.31e-50 | 173 |
Msa0049700 | AT1G51890.3 | 32.973 | 370 | 139 | 6 | 1 | 262 | 273 | 641 | 4.28e-49 | 172 |
Msa0049700 | AT1G51890.4 | 32.973 | 370 | 139 | 6 | 1 | 262 | 209 | 577 | 5.77e-49 | 172 |
Msa0049700 | AT1G51890.2 | 32.973 | 370 | 139 | 6 | 1 | 262 | 273 | 641 | 7.45e-49 | 172 |
Msa0049700 | AT1G51890.1 | 32.973 | 370 | 139 | 6 | 1 | 262 | 273 | 641 | 1.01e-48 | 172 |
Msa0049700 | AT1G51860.2 | 34.896 | 384 | 122 | 11 | 1 | 262 | 134 | 511 | 1.50e-47 | 168 |
Msa0049700 | AT1G51870.2 | 33.420 | 383 | 128 | 8 | 1 | 262 | 278 | 654 | 1.94e-47 | 169 |
Msa0049700 | AT1G05700.1 | 33.604 | 369 | 131 | 9 | 1 | 262 | 280 | 641 | 3.37e-47 | 168 |
Msa0049700 | AT1G51860.1 | 35.156 | 384 | 121 | 11 | 1 | 262 | 278 | 655 | 3.74e-47 | 168 |
Msa0049700 | AT4G29990.2 | 31.635 | 373 | 137 | 10 | 1 | 262 | 280 | 645 | 2.51e-45 | 162 |
Msa0049700 | AT4G29990.1 | 31.635 | 373 | 137 | 10 | 1 | 262 | 280 | 645 | 3.08e-45 | 162 |
Msa0049700 | AT3G46420.1 | 32.754 | 345 | 130 | 9 | 1 | 262 | 278 | 603 | 1.24e-44 | 160 |
Msa0049700 | AT1G51850.2 | 31.088 | 386 | 137 | 10 | 1 | 262 | 270 | 650 | 8.11e-44 | 158 |
Msa0049700 | AT1G51850.1 | 31.088 | 386 | 137 | 10 | 1 | 262 | 250 | 630 | 9.52e-44 | 158 |
Msa0049700 | AT1G51810.1 | 30.909 | 385 | 136 | 10 | 1 | 262 | 145 | 522 | 1.21e-43 | 157 |
Msa0049700 | AT1G51820.1 | 29.974 | 387 | 140 | 9 | 1 | 262 | 270 | 650 | 8.38e-43 | 155 |
Msa0049700 | AT1G51830.1 | 30.287 | 383 | 141 | 9 | 1 | 262 | 81 | 458 | 1.01e-42 | 154 |
Msa0049700 | AT1G51830.2 | 30.287 | 383 | 141 | 9 | 1 | 262 | 88 | 465 | 1.25e-42 | 154 |
Msa0049700 | AT1G51820.2 | 29.504 | 383 | 139 | 9 | 5 | 262 | 12 | 388 | 4.50e-41 | 149 |
Msa0049700 | AT1G07560.1 | 30.811 | 370 | 141 | 11 | 1 | 262 | 280 | 642 | 1.32e-40 | 149 |
Msa0049700 | AT1G51910.1 | 33.333 | 375 | 130 | 10 | 1 | 262 | 278 | 645 | 1.63e-39 | 146 |
Msa0049700 | AT2G28970.1 | 30.504 | 377 | 146 | 10 | 1 | 262 | 176 | 551 | 2.14e-39 | 145 |
Msa0049700 | AT2G28970.2 | 30.504 | 377 | 146 | 10 | 1 | 262 | 141 | 516 | 2.78e-39 | 145 |
Msa0049700 | AT2G19190.1 | 32.143 | 364 | 143 | 12 | 1 | 262 | 284 | 645 | 7.61e-39 | 144 |
Msa0049700 | AT3G21340.2 | 29.610 | 385 | 146 | 10 | 1 | 262 | 282 | 664 | 2.37e-38 | 142 |
Msa0049700 | AT3G21340.1 | 29.610 | 385 | 146 | 10 | 1 | 262 | 282 | 664 | 3.27e-38 | 142 |
Msa0049700 | AT1G51800.1 | 28.198 | 383 | 153 | 10 | 1 | 262 | 276 | 657 | 3.64e-37 | 139 |
Msa0049700 | AT4G20450.2 | 29.268 | 369 | 153 | 9 | 1 | 262 | 296 | 663 | 5.79e-37 | 139 |
Msa0049700 | AT4G20450.1 | 29.268 | 369 | 153 | 9 | 1 | 262 | 296 | 663 | 7.14e-37 | 138 |
Msa0049700 | AT1G49100.1 | 28.947 | 380 | 147 | 10 | 1 | 262 | 279 | 653 | 4.16e-36 | 136 |
Msa0049700 | AT3G46330.2 | 30.267 | 337 | 159 | 9 | 1 | 262 | 279 | 614 | 4.45e-36 | 136 |
Msa0049700 | AT2G14440.1 | 29.640 | 361 | 149 | 9 | 1 | 262 | 281 | 635 | 1.23e-35 | 135 |
Msa0049700 | AT5G59680.1 | 30.971 | 381 | 136 | 11 | 2 | 262 | 279 | 652 | 1.45e-35 | 134 |
Msa0049700 | AT2G28990.2 | 27.778 | 378 | 156 | 7 | 1 | 262 | 273 | 649 | 3.11e-35 | 134 |
Msa0049700 | AT2G28990.1 | 27.778 | 378 | 156 | 7 | 1 | 262 | 273 | 649 | 3.11e-35 | 134 |
Msa0049700 | AT3G46400.1 | 28.108 | 370 | 156 | 9 | 2 | 262 | 280 | 648 | 6.90e-35 | 132 |
Msa0049700 | AT2G14510.1 | 29.363 | 361 | 150 | 9 | 1 | 262 | 280 | 634 | 8.63e-35 | 132 |
Msa0049700 | AT2G14510.2 | 29.363 | 361 | 150 | 9 | 1 | 262 | 288 | 642 | 8.66e-35 | 132 |
Msa0049700 | AT5G16900.4 | 28.342 | 374 | 156 | 9 | 1 | 262 | 86 | 459 | 1.56e-34 | 131 |
Msa0049700 | AT5G16900.1 | 28.342 | 374 | 156 | 9 | 1 | 262 | 272 | 645 | 3.56e-34 | 130 |
Msa0049700 | AT5G16900.3 | 28.342 | 374 | 156 | 9 | 1 | 262 | 272 | 645 | 3.56e-34 | 130 |
Msa0049700 | AT3G46370.2 | 29.144 | 374 | 147 | 9 | 2 | 262 | 191 | 559 | 4.62e-34 | 130 |
Msa0049700 | AT3G46370.1 | 29.144 | 374 | 147 | 9 | 2 | 262 | 191 | 559 | 4.62e-34 | 130 |
Msa0049700 | AT2G29000.1 | 31.250 | 368 | 143 | 11 | 1 | 262 | 274 | 637 | 7.26e-34 | 130 |
Msa0049700 | AT3G46330.1 | 29.363 | 361 | 155 | 11 | 1 | 262 | 279 | 638 | 7.49e-34 | 130 |
Msa0049700 | AT1G07550.1 | 29.917 | 361 | 147 | 13 | 1 | 262 | 278 | 631 | 1.95e-32 | 125 |
Msa0049700 | AT1G51790.3 | 26.984 | 378 | 150 | 11 | 1 | 262 | 281 | 648 | 9.36e-32 | 124 |
Msa0049700 | AT1G51790.1 | 26.984 | 378 | 150 | 11 | 1 | 262 | 281 | 648 | 9.36e-32 | 124 |
Msa0049700 | AT4G29180.2 | 29.973 | 377 | 140 | 16 | 1 | 262 | 285 | 652 | 6.16e-29 | 115 |
Msa0049700 | AT1G05700.2 | 32.959 | 267 | 94 | 7 | 1 | 188 | 280 | 540 | 1.21e-28 | 114 |
Msa0049700 | AT1G05700.2 | 50.000 | 72 | 35 | 1 | 191 | 262 | 602 | 672 | 1.98e-14 | 73.2 |
Msa0049700 | AT4G29180.3 | 29.947 | 374 | 141 | 16 | 1 | 262 | 285 | 649 | 3.09e-28 | 113 |
Msa0049700 | AT5G59650.1 | 29.867 | 375 | 147 | 13 | 2 | 262 | 279 | 651 | 3.09e-28 | 113 |
Msa0049700 | AT5G59660.2 | 32.215 | 298 | 97 | 7 | 40 | 238 | 245 | 536 | 4.85e-28 | 113 |
Msa0049700 | AT5G59660.1 | 32.215 | 298 | 97 | 7 | 40 | 238 | 267 | 558 | 5.69e-28 | 112 |
Msa0049700 | AT5G16900.2 | 27.147 | 361 | 151 | 9 | 1 | 249 | 272 | 632 | 2.97e-27 | 110 |
Msa0049700 | AT5G59660.3 | 32.226 | 301 | 96 | 8 | 40 | 238 | 267 | 561 | 1.03e-26 | 109 |
Msa0049700 | AT5G59650.2 | 28.460 | 383 | 150 | 13 | 2 | 262 | 279 | 659 | 3.79e-25 | 104 |
Msa0049700 | AT2G04300.1 | 29.341 | 334 | 161 | 8 | 1 | 262 | 283 | 613 | 6.43e-25 | 103 |
Msa0049700 | AT4G29180.1 | 28.571 | 378 | 142 | 16 | 1 | 262 | 285 | 650 | 1.99e-24 | 102 |
Msa0049700 | AT3G46340.1 | 36.364 | 176 | 73 | 6 | 1 | 144 | 281 | 449 | 5.68e-22 | 95.5 |
Msa0049700 | AT3G46340.1 | 48.649 | 74 | 37 | 1 | 190 | 262 | 585 | 658 | 6.35e-15 | 74.7 |
Msa0049700 | AT2G04300.2 | 58.333 | 72 | 30 | 0 | 191 | 262 | 583 | 654 | 1.31e-21 | 94.4 |
Msa0049700 | AT2G04300.2 | 36.000 | 175 | 75 | 5 | 1 | 144 | 283 | 451 | 3.35e-21 | 93.2 |
Msa0049700 | AT1G51790.2 | 26.117 | 291 | 117 | 9 | 1 | 202 | 281 | 562 | 3.78e-20 | 90.1 |
Msa0049700 | AT5G59616.1 | 37.226 | 137 | 56 | 4 | 2 | 108 | 17 | 153 | 3.76e-19 | 82.0 |
Msa0049700 | AT5G59670.2 | 33.735 | 166 | 73 | 5 | 2 | 135 | 277 | 437 | 2.83e-18 | 84.7 |
Msa0049700 | AT5G59670.2 | 49.315 | 73 | 37 | 0 | 190 | 262 | 564 | 636 | 7.46e-16 | 77.4 |
Msa0049700 | AT5G59670.1 | 33.735 | 166 | 73 | 5 | 2 | 135 | 277 | 437 | 2.83e-18 | 84.7 |
Msa0049700 | AT5G59670.1 | 49.315 | 73 | 37 | 0 | 190 | 262 | 564 | 636 | 7.46e-16 | 77.4 |
Msa0049700 | AT2G28960.1 | 50.000 | 72 | 36 | 0 | 191 | 262 | 442 | 513 | 2.88e-17 | 81.6 |
Msa0049700 | AT2G28960.1 | 35.152 | 165 | 68 | 6 | 2 | 134 | 145 | 302 | 1.20e-16 | 79.7 |
Msa0049700 | AT2G28960.2 | 50.000 | 72 | 36 | 0 | 191 | 262 | 574 | 645 | 3.44e-17 | 81.3 |
Msa0049700 | AT2G28960.2 | 34.940 | 166 | 69 | 6 | 2 | 135 | 277 | 435 | 1.58e-16 | 79.3 |
Msa0049700 | AT5G28680.1 | 41.176 | 85 | 48 | 1 | 180 | 262 | 509 | 593 | 1.28e-12 | 67.8 |
Msa0049700 | AT5G28680.2 | 41.176 | 85 | 48 | 1 | 180 | 262 | 509 | 593 | 1.28e-12 | 67.8 |
Msa0049700 | AT4G29450.1 | 44.048 | 84 | 35 | 2 | 191 | 262 | 567 | 650 | 1.42e-12 | 67.8 |
Msa0049700 | AT3G04690.1 | 41.176 | 85 | 48 | 1 | 180 | 262 | 505 | 589 | 1.63e-12 | 67.4 |
Msa0049700 | AT2G37050.2 | 21.717 | 396 | 165 | 12 | 2 | 259 | 285 | 673 | 3.32e-12 | 66.6 |
Msa0049700 | AT1G51620.2 | 47.887 | 71 | 36 | 1 | 192 | 262 | 49 | 118 | 1.68e-11 | 63.9 |
Msa0049700 | AT4G32710.1 | 38.043 | 92 | 57 | 0 | 171 | 262 | 370 | 461 | 1.87e-11 | 64.3 |
Msa0049700 | AT5G38990.1 | 32.824 | 131 | 80 | 3 | 140 | 262 | 468 | 598 | 2.41e-11 | 63.9 |
Msa0049700 | AT4G39110.1 | 36.471 | 85 | 52 | 1 | 180 | 262 | 514 | 598 | 3.10e-11 | 63.9 |
Msa0049700 | AT2G37050.4 | 37.037 | 81 | 50 | 1 | 180 | 259 | 594 | 674 | 7.66e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAACTTCCAGCGGTTTAAT+TGG | 0.192363 | 1_2:-3168854 | Msa0049700:CDS |
TTTGATTTGCATCGAGCTTC+TGG | 0.227717 | 1_2:+3170102 | None:intergenic |
AAATACTTGACAGGTCTTAT+AGG | 0.242464 | 1_2:-3167130 | Msa0049700:CDS |
TTAATTGGAACTATAGCTTC+TGG | 0.326254 | 1_2:-3168839 | Msa0049700:CDS |
AATACTTGACAGGTCTTATA+GGG | 0.376188 | 1_2:-3167129 | Msa0049700:CDS |
CAATGTCGTCGAGACATATA+TGG | 0.381553 | 1_2:-3169922 | Msa0049700:CDS |
GATTCATGCAACAAGAGAAA+TGG | 0.383099 | 1_2:-3167818 | Msa0049700:CDS |
TACCAACATAGCTGCAGTTT+AGG | 0.411492 | 1_2:+3168972 | None:intergenic |
GAAGATACAAAGGAATGAAT+AGG | 0.428109 | 1_2:+3170033 | None:intergenic |
TTTGAAAAGGTTGTGGAGAA+AGG | 0.428970 | 1_2:-3167401 | Msa0049700:CDS |
CAGAAACTTTGAAAAGGTTG+TGG | 0.430911 | 1_2:-3167408 | Msa0049700:CDS |
ATATTCTATTGACTTCAGAT+TGG | 0.437899 | 1_2:+3168811 | None:intergenic |
CCACCAACTGATACTACTAA+TGG | 0.439249 | 1_2:+3167779 | None:intergenic |
CTAAGCTGCCAGTGACAACT+TGG | 0.444235 | 1_2:-3170189 | None:intergenic |
TAATTGGAACTATAGCTTCT+GGG | 0.444237 | 1_2:-3168838 | Msa0049700:CDS |
CCTTCAGGAACTATAGCTTC+TGG | 0.445608 | 1_2:-3168880 | Msa0049700:intron |
GTGAAACGAAGTTGGAACTT+TGG | 0.448803 | 1_2:-3169983 | Msa0049700:CDS |
GTTGTGGAGAAAGGAGCATC+TGG | 0.469808 | 1_2:-3167392 | Msa0049700:CDS |
CTTATAGGGTATTGTGATGA+TGG | 0.472954 | 1_2:-3167115 | Msa0049700:CDS |
ATTCATGCAACAAGAGAAAT+GGG | 0.480576 | 1_2:-3167817 | Msa0049700:CDS |
GGCCTAAACTGCAGCTATGT+TGG | 0.481031 | 1_2:-3168974 | Msa0049700:CDS |
GGCATTATACTTGGGAAGGA+AGG | 0.485026 | 1_2:+3170160 | None:intergenic |
CAACAAGAGAAATGGGAGTA+AGG | 0.487221 | 1_2:-3167810 | Msa0049700:CDS |
ATATGTGGAGGCATTATACT+TGG | 0.487647 | 1_2:+3170151 | None:intergenic |
CTGGAACAGTCTACCATGGC+TGG | 0.488403 | 1_2:-3167373 | Msa0049700:CDS |
AGTTATTAGTGAAACGAAGT+TGG | 0.493413 | 1_2:-3169991 | Msa0049700:intron |
GTACTCCAGTGTCTTACTTG+TGG | 0.508313 | 1_2:-3169000 | Msa0049700:CDS |
CATTACCAGAAACTTTGAAA+AGG | 0.512003 | 1_2:-3167414 | Msa0049700:intron |
TCTCTTGTTGCATGAATCTG+AGG | 0.513564 | 1_2:+3167823 | None:intergenic |
ACTTACAAGTATATGATCCT+TGG | 0.514030 | 1_2:+3168941 | None:intergenic |
AAGTAAGACACTGGAGTACA+AGG | 0.521279 | 1_2:+3169004 | None:intergenic |
ACTCTAGATTAGAGCCATGT+TGG | 0.527280 | 1_2:+3167090 | None:intergenic |
GTTCATCATAAATACTTGAC+AGG | 0.530148 | 1_2:-3167139 | Msa0049700:CDS |
CCAGTGTCTTACTTGTGGAA+TGG | 0.545016 | 1_2:-3168995 | Msa0049700:CDS |
ATAGAAAGCCAAACCTACCT+TGG | 0.547821 | 1_2:+3167699 | None:intergenic |
TATAGTTCCAATTAAACCGC+TGG | 0.550918 | 1_2:+3168847 | None:intergenic |
GTCTCGACGACATTGAATAG+TGG | 0.551109 | 1_2:+3169930 | None:intergenic |
GTTCCATTAGTAGTATCAGT+TGG | 0.554832 | 1_2:-3167782 | Msa0049700:CDS |
CAGATATCCTTGAGTTGATG+AGG | 0.561128 | 1_2:+3167310 | None:intergenic |
GTGCATGTACACATAATATG+TGG | 0.566614 | 1_2:+3170136 | None:intergenic |
CCATTAGTAGTATCAGTTGG+TGG | 0.569905 | 1_2:-3167779 | Msa0049700:CDS |
TTCTGGAACTTAACTTCCAG+CGG | 0.576842 | 1_2:-3168863 | Msa0049700:CDS |
CTATCTTCCTCATCAACTCA+AGG | 0.579253 | 1_2:-3167317 | Msa0049700:CDS |
TGGAGGCATTATACTTGGGA+AGG | 0.584867 | 1_2:+3170156 | None:intergenic |
AAACTGCAGCTATGTTGGTA+CGG | 0.585202 | 1_2:-3168969 | Msa0049700:CDS |
TACAGGTTCTGAAGATACAA+AGG | 0.605212 | 1_2:+3170023 | None:intergenic |
CCATTCCACAAGTAAGACAC+TGG | 0.617935 | 1_2:+3168995 | None:intergenic |
CGTCGAGACATATATGGCAA+AGG | 0.622385 | 1_2:-3169916 | Msa0049700:CDS |
TATGTGGAGGCATTATACTT+GGG | 0.630511 | 1_2:+3170152 | None:intergenic |
TATCATGATCAATCCAGCCA+TGG | 0.635701 | 1_2:+3167360 | None:intergenic |
TCGACGACATTGAATAGTGG+TGG | 0.637303 | 1_2:+3169933 | None:intergenic |
ATATCTGCAATTTCAAGCAG+AGG | 0.641697 | 1_2:-3167294 | Msa0049700:intron |
CATGTACACATAATATGTGG+AGG | 0.657421 | 1_2:+3170139 | None:intergenic |
GCATCTGGAACAGTCTACCA+TGG | 0.666857 | 1_2:-3167377 | Msa0049700:CDS |
ATGTTGGTACGGATTCGCCA+AGG | 0.677061 | 1_2:-3168958 | Msa0049700:CDS |
ACTACAAGAGACACCAAGGT+AGG | 0.680841 | 1_2:-3167712 | Msa0049700:intron |
CTGGATTGATCATGATACTG+AGG | 0.708911 | 1_2:-3167354 | Msa0049700:CDS |
TTGTGATGATGGCACCAACA+TGG | 0.719558 | 1_2:-3167104 | Msa0049700:CDS |
ATATACTACAAGAGACACCA+AGG | 0.741720 | 1_2:-3167716 | Msa0049700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTATATTTTTATTAAA+TGG | - | chr1_2:3167680-3167699 | Msa0049700:intron | 0.0% |
!!! | AAAATAAAAAAACAGTTTTT+TGG | - | chr1_2:3168016-3168035 | Msa0049700:intron | 10.0% |
!! | TAAAAAAATTGAAAAAATAC+TGG | + | chr1_2:3168133-3168152 | None:intergenic | 10.0% |
!!! | TTTTATTTCTTCTTTATATT+TGG | - | chr1_2:3169155-3169174 | Msa0049700:intron | 10.0% |
!! | ATTTATATATCAAAAATGTA+TGG | - | chr1_2:3169349-3169368 | Msa0049700:intron | 10.0% |
!! | ATAAAAATAGATGATTTAAT+TGG | - | chr1_2:3169629-3169648 | Msa0049700:intron | 10.0% |
!! | TAAAAATAGATGATTTAATT+GGG | - | chr1_2:3169630-3169649 | Msa0049700:intron | 10.0% |
!! | TAATAACTGATATATAATAC+AGG | + | chr1_2:3167270-3167289 | None:intergenic | 15.0% |
!! | TTTAAAAATAAAATCTGATG+TGG | + | chr1_2:3167726-3167745 | None:intergenic | 15.0% |
!!! | ATTTTTCTACTAAAAAAATC+TGG | + | chr1_2:3167995-3168014 | None:intergenic | 15.0% |
!!! | TCTATTTTTATTCTATTGTT+CGG | + | chr1_2:3169620-3169639 | None:intergenic | 15.0% |
!! | ATAATTTGACAATTTATGAT+CGG | - | chr1_2:3169758-3169777 | Msa0049700:intron | 15.0% |
!!! | AGTTCAACATTTTTGTAAAT+GGG | - | chr1_2:3167200-3167219 | Msa0049700:intron | 20.0% |
!! | TCTGAAAAAAAAAATTTACG+AGG | + | chr1_2:3167603-3167622 | None:intergenic | 20.0% |
!! | TTGAAAAAATACTGGAATTT+AGG | + | chr1_2:3168125-3168144 | None:intergenic | 20.0% |
!! | ATACTGGAATTTAAAAATAC+TGG | + | chr1_2:3168165-3168184 | None:intergenic | 20.0% |
!! | TCAATTAATTATATTGCTTG+AGG | - | chr1_2:3168681-3168700 | Msa0049700:intron | 20.0% |
!!! | TTTTATTTACTGAAGAAACT+TGG | - | chr1_2:3168756-3168775 | Msa0049700:intron | 20.0% |
!! | AAAACTATACAAATTATGCA+AGG | + | chr1_2:3168859-3168878 | None:intergenic | 20.0% |
!! | TAGCCAAGTAATATATTAAT+GGG | + | chr1_2:3168895-3168914 | None:intergenic | 20.0% |
!! | AACTTTAAATAGAACATACT+TGG | + | chr1_2:3169274-3169293 | None:intergenic | 20.0% |
!! | GAGTTCAACATTTTTGTAAA+TGG | - | chr1_2:3167199-3167218 | Msa0049700:intron | 25.0% |
! | AACTAAATAGTACATACCAT+CGG | + | chr1_2:3167410-3167429 | None:intergenic | 25.0% |
! | TTCTTACAATCTTATTCGTA+TGG | - | chr1_2:3167506-3167525 | Msa0049700:intron | 25.0% |
! | TCTTACAATCTTATTCGTAT+GGG | - | chr1_2:3167507-3167526 | Msa0049700:intron | 25.0% |
! | GGTAAGACATTTAAAAATAC+TGG | + | chr1_2:3168104-3168123 | None:intergenic | 25.0% |
! | AAGGAAAACATTGAAAATAC+TGG | + | chr1_2:3168181-3168200 | None:intergenic | 25.0% |
! | TAGCATCAACTATTATCATA+AGG | + | chr1_2:3168200-3168219 | None:intergenic | 25.0% |
! | TAAATGTGAAGTCAACTTAT+GGG | - | chr1_2:3168223-3168242 | Msa0049700:intron | 25.0% |
! | TCATATACTTGTAAGTTATG+TGG | - | chr1_2:3168339-3168358 | Msa0049700:intron | 25.0% |
!!! | ATATTCTATTGACTTCAGAT+TGG | + | chr1_2:3168465-3168484 | None:intergenic | 25.0% |
! | GATCACAAAATAGAATGTTA+AGG | - | chr1_2:3168541-3168560 | Msa0049700:intron | 25.0% |
!!! | CAAGGTTTATTTTTCTTTTG+GGG | + | chr1_2:3168841-3168860 | None:intergenic | 25.0% |
!!! | GCAAGGTTTATTTTTCTTTT+GGG | + | chr1_2:3168842-3168861 | None:intergenic | 25.0% |
!!! | TGCAAGGTTTATTTTTCTTT+TGG | + | chr1_2:3168843-3168862 | None:intergenic | 25.0% |
! | TACCCCATTAATATATTACT+TGG | - | chr1_2:3168889-3168908 | Msa0049700:intron | 25.0% |
! | AGCCAAGTAATATATTAATG+GGG | + | chr1_2:3168894-3168913 | None:intergenic | 25.0% |
! | GTAGCCAAGTAATATATTAA+TGG | + | chr1_2:3168896-3168915 | None:intergenic | 25.0% |
!! | TTGTCGCTTCATTAAATATA+AGG | - | chr1_2:3169069-3169088 | Msa0049700:intron | 25.0% |
!! | AGCTAATACAATTTTTACGA+GGG | + | chr1_2:3169183-3169202 | None:intergenic | 25.0% |
!! | AAGCTAATACAATTTTTACG+AGG | + | chr1_2:3169184-3169203 | None:intergenic | 25.0% |
!!! | GTGTGATTTTTAAGATAATC+AGG | - | chr1_2:3169713-3169732 | Msa0049700:intron | 25.0% |
! | ACAATTTATGATCGGTAAAT+TGG | - | chr1_2:3169766-3169785 | Msa0049700:intron | 25.0% |
GAAGATACAAAGGAATGAAT+AGG | + | chr1_2:3167243-3167262 | None:intergenic | 30.0% | |
AGTTATTAGTGAAACGAAGT+TGG | - | chr1_2:3167282-3167301 | Msa0049700:intron | 30.0% | |
TCAAAAACATATCAAACCGA+TGG | - | chr1_2:3167391-3167410 | Msa0049700:CDS | 30.0% | |
CATGTAAATAATGAAGTGCA+TGG | + | chr1_2:3167481-3167500 | None:intergenic | 30.0% | |
CATGCACTTCATTATTTACA+TGG | - | chr1_2:3167479-3167498 | Msa0049700:intron | 30.0% | |
ACCAAACCGAAAATTTCTTA+GGG | + | chr1_2:3167574-3167593 | None:intergenic | 30.0% | |
AACCAAACCGAAAATTTCTT+AGG | + | chr1_2:3167575-3167594 | None:intergenic | 30.0% | |
TGGAAAATTAATTTCACACG+TGG | + | chr1_2:3167706-3167725 | None:intergenic | 30.0% | |
! | CATAAGTTGACTTCACATTT+AGG | + | chr1_2:3168224-3168243 | None:intergenic | 30.0% |
CTAAATGTGAAGTCAACTTA+TGG | - | chr1_2:3168222-3168241 | Msa0049700:intron | 30.0% | |
ACTTACAAGTATATGATCCT+TGG | + | chr1_2:3168335-3168354 | None:intergenic | 30.0% | |
TTAATTGGAACTATAGCTTC+TGG | - | chr1_2:3168434-3168453 | Msa0049700:intron | 30.0% | |
TAATTGGAACTATAGCTTCT+GGG | - | chr1_2:3168435-3168454 | Msa0049700:intron | 30.0% | |
TTGTCGAATAACAATTTGAC+TGG | - | chr1_2:3168566-3168585 | Msa0049700:intron | 30.0% | |
ATCTTCATCTAAGTTATCCT+AGG | - | chr1_2:3168645-3168664 | Msa0049700:intron | 30.0% | |
ATTTACTGAAGAAACTTGGA+AGG | - | chr1_2:3168760-3168779 | Msa0049700:intron | 30.0% | |
! | GCTACTCTAAACAATTTTGT+TGG | - | chr1_2:3168911-3168930 | Msa0049700:intron | 30.0% |
! | CTAATACAATTTTTACGAGG+GGG | + | chr1_2:3169181-3169200 | None:intergenic | 30.0% |
! | GCTAATACAATTTTTACGAG+GGG | + | chr1_2:3169182-3169201 | None:intergenic | 30.0% |
! | ATTACTGTATGTGCAAGTTT+TGG | - | chr1_2:3169407-3169426 | Msa0049700:intron | 30.0% |
ATTCATGCAACAAGAGAAAT+GGG | - | chr1_2:3169456-3169475 | Msa0049700:intron | 30.0% | |
! | CATTACCAGAAACTTTGAAA+AGG | - | chr1_2:3169859-3169878 | Msa0049700:intron | 30.0% |
ATGAACTACAGCAAAAAGTT+TGG | + | chr1_2:3170120-3170139 | None:intergenic | 30.0% | |
GTTCATCATAAATACTTGAC+AGG | - | chr1_2:3170134-3170153 | Msa0049700:exon | 30.0% | |
! | AAATACTTGACAGGTCTTAT+AGG | - | chr1_2:3170143-3170162 | Msa0049700:five_prime_UTR | 30.0% |
! | AATACTTGACAGGTCTTATA+GGG | - | chr1_2:3170144-3170163 | Msa0049700:five_prime_UTR | 30.0% |
!! | TATGTGGAGGCATTATACTT+GGG | + | chr1_2:3167124-3167143 | None:intergenic | 35.0% |
!! | ATATGTGGAGGCATTATACT+TGG | + | chr1_2:3167125-3167144 | None:intergenic | 35.0% |
CATGTACACATAATATGTGG+AGG | + | chr1_2:3167137-3167156 | None:intergenic | 35.0% | |
GTGCATGTACACATAATATG+TGG | + | chr1_2:3167140-3167159 | None:intergenic | 35.0% | |
!! | TACAGGTTCTGAAGATACAA+AGG | + | chr1_2:3167253-3167272 | None:intergenic | 35.0% |
! | TTCCTTTTGTAGTCATTTCC+AGG | - | chr1_2:3167542-3167561 | Msa0049700:intron | 35.0% |
AACCTGGAAATGACTACAAA+AGG | + | chr1_2:3167547-3167566 | None:intergenic | 35.0% | |
AAACCGAAAATTTCTTAGGG+GGG | + | chr1_2:3167571-3167590 | None:intergenic | 35.0% | |
CAAACCGAAAATTTCTTAGG+GGG | + | chr1_2:3167572-3167591 | None:intergenic | 35.0% | |
CCAAACCGAAAATTTCTTAG+GGG | + | chr1_2:3167573-3167592 | None:intergenic | 35.0% | |
!! | TACATTTTGCTGAGTTGGAT+GGG | + | chr1_2:3167638-3167657 | None:intergenic | 35.0% |
!! | TTACATTTTGCTGAGTTGGA+TGG | + | chr1_2:3167639-3167658 | None:intergenic | 35.0% |
! | CGTATTACATTTTGCTGAGT+TGG | + | chr1_2:3167643-3167662 | None:intergenic | 35.0% |
ACTCAGCAAAATGTAATACG+TGG | - | chr1_2:3167643-3167662 | Msa0049700:intron | 35.0% | |
AGTTCCTGAAGGATTATCAT+CGG | + | chr1_2:3168385-3168404 | None:intergenic | 35.0% | |
TTAACTTCCAGCGGTTTAAT+TGG | - | chr1_2:3168419-3168438 | Msa0049700:intron | 35.0% | |
TATAGTTCCAATTAAACCGC+TGG | + | chr1_2:3168429-3168448 | None:intergenic | 35.0% | |
TTGAATAATCAAGTCAGCCT+AGG | + | chr1_2:3168665-3168684 | None:intergenic | 35.0% | |
TACTATTCTTTGAACGCACA+AGG | + | chr1_2:3169242-3169261 | None:intergenic | 35.0% | |
ACTAACACATCACGTACAAA+AGG | + | chr1_2:3169319-3169338 | None:intergenic | 35.0% | |
GATTCATGCAACAAGAGAAA+TGG | - | chr1_2:3169455-3169474 | Msa0049700:intron | 35.0% | |
GTTCCATTAGTAGTATCAGT+TGG | - | chr1_2:3169491-3169510 | Msa0049700:intron | 35.0% | |
ATATACTACAAGAGACACCA+AGG | - | chr1_2:3169557-3169576 | Msa0049700:intron | 35.0% | |
GCTTTCTATTCCATTGACAT+TGG | - | chr1_2:3169588-3169607 | Msa0049700:intron | 35.0% | |
TCTATTCCATTGACATTGGT+AGG | - | chr1_2:3169592-3169611 | Msa0049700:intron | 35.0% | |
! | CACAACCTTTTCAAAGTTTC+TGG | + | chr1_2:3169867-3169886 | None:intergenic | 35.0% |
! | CAGAAACTTTGAAAAGGTTG+TGG | - | chr1_2:3169865-3169884 | Msa0049700:intron | 35.0% |
TTTGAAAAGGTTGTGGAGAA+AGG | - | chr1_2:3169872-3169891 | Msa0049700:intron | 35.0% | |
ATATCTGCAATTTCAAGCAG+AGG | - | chr1_2:3169979-3169998 | Msa0049700:CDS | 35.0% | |
CTTGTGAACTGAAGGAATTA+TGG | - | chr1_2:3170073-3170092 | Msa0049700:CDS | 35.0% | |
!! | CTTATAGGGTATTGTGATGA+TGG | - | chr1_2:3170158-3170177 | Msa0049700:five_prime_UTR | 35.0% |
!! | TTTGATTTGCATCGAGCTTC+TGG | + | chr1_2:3167174-3167193 | None:intergenic | 40.0% |
GTGAAACGAAGTTGGAACTT+TGG | - | chr1_2:3167290-3167309 | Msa0049700:intron | 40.0% | |
CAATGTCGTCGAGACATATA+TGG | - | chr1_2:3167351-3167370 | Msa0049700:CDS | 40.0% | |
! | TTCCCCCCCTAAGAAATTTT+CGG | - | chr1_2:3167565-3167584 | Msa0049700:intron | 40.0% |
AACCGAAAATTTCTTAGGGG+GGG | + | chr1_2:3167570-3167589 | None:intergenic | 40.0% | |
! | CCCCTAAGAAATTTTCGGTT+TGG | - | chr1_2:3167570-3167589 | Msa0049700:intron | 40.0% |
!! | ACATTTTGCTGAGTTGGATG+GGG | + | chr1_2:3167637-3167656 | None:intergenic | 40.0% |
CTTATGGGATCAAGAGAAAC+TGG | - | chr1_2:3168238-3168257 | Msa0049700:intron | 40.0% | |
AAGTAAGACACTGGAGTACA+AGG | + | chr1_2:3168272-3168291 | None:intergenic | 40.0% | |
TACCAACATAGCTGCAGTTT+AGG | + | chr1_2:3168304-3168323 | None:intergenic | 40.0% | |
AAACTGCAGCTATGTTGGTA+CGG | - | chr1_2:3168304-3168323 | Msa0049700:intron | 40.0% | |
!! | TTCTGGAACTTAACTTCCAG+CGG | - | chr1_2:3168410-3168429 | Msa0049700:intron | 40.0% |
AAGGAAATCAGCTATCAGCA+GGG | - | chr1_2:3168779-3168798 | Msa0049700:intron | 40.0% | |
GCGAATCCCTTCATAACAAT+GGG | - | chr1_2:3168802-3168821 | Msa0049700:intron | 40.0% | |
CGAATCCCTTCATAACAATG+GGG | - | chr1_2:3168803-3168822 | Msa0049700:intron | 40.0% | |
TGCTACCCCATTGTTATGAA+GGG | + | chr1_2:3168811-3168830 | None:intergenic | 40.0% | |
ATGCTACCCCATTGTTATGA+AGG | + | chr1_2:3168812-3168831 | None:intergenic | 40.0% | |
TCATAACAATGGGGTAGCAT+TGG | - | chr1_2:3168812-3168831 | Msa0049700:CDS | 40.0% | |
TCTCTTGTTGCATGAATCTG+AGG | + | chr1_2:3169453-3169472 | None:intergenic | 40.0% | |
CAACAAGAGAAATGGGAGTA+AGG | - | chr1_2:3169463-3169482 | Msa0049700:intron | 40.0% | |
CCACCAACTGATACTACTAA+TGG | + | chr1_2:3169497-3169516 | None:intergenic | 40.0% | |
CCATTAGTAGTATCAGTTGG+TGG | - | chr1_2:3169494-3169513 | Msa0049700:intron | 40.0% | |
ATAGAAAGCCAAACCTACCT+TGG | + | chr1_2:3169577-3169596 | None:intergenic | 40.0% | |
TATCATGATCAATCCAGCCA+TGG | + | chr1_2:3169916-3169935 | None:intergenic | 40.0% | |
CTGGATTGATCATGATACTG+AGG | - | chr1_2:3169919-3169938 | Msa0049700:CDS | 40.0% | |
CTATCTTCCTCATCAACTCA+AGG | - | chr1_2:3169956-3169975 | Msa0049700:CDS | 40.0% | |
!! | CAGATATCCTTGAGTTGATG+AGG | + | chr1_2:3169966-3169985 | None:intergenic | 40.0% |
ACGATGTTCTTGTGAACTGA+AGG | - | chr1_2:3170065-3170084 | Msa0049700:CDS | 40.0% | |
! | GGTTTTCCTTTCTGATTCAC+AGG | - | chr1_2:3170094-3170113 | Msa0049700:CDS | 40.0% |
GGCATTATACTTGGGAAGGA+AGG | + | chr1_2:3167116-3167135 | None:intergenic | 45.0% | |
!! | TGGAGGCATTATACTTGGGA+AGG | + | chr1_2:3167120-3167139 | None:intergenic | 45.0% |
TCGACGACATTGAATAGTGG+TGG | + | chr1_2:3167343-3167362 | None:intergenic | 45.0% | |
GTCTCGACGACATTGAATAG+TGG | + | chr1_2:3167346-3167365 | None:intergenic | 45.0% | |
CGTCGAGACATATATGGCAA+AGG | - | chr1_2:3167357-3167376 | Msa0049700:CDS | 45.0% | |
!! | CATTTTGCTGAGTTGGATGG+GGG | + | chr1_2:3167636-3167655 | None:intergenic | 45.0% |
!! | TGTAATACGTGGCGCTGATT+TGG | - | chr1_2:3167654-3167673 | Msa0049700:intron | 45.0% |
GTACTCCAGTGTCTTACTTG+TGG | - | chr1_2:3168273-3168292 | Msa0049700:intron | 45.0% | |
CCATTCCACAAGTAAGACAC+TGG | + | chr1_2:3168281-3168300 | None:intergenic | 45.0% | |
CCAGTGTCTTACTTGTGGAA+TGG | - | chr1_2:3168278-3168297 | Msa0049700:intron | 45.0% | |
TACGCCGATGATAATCCTTC+AGG | - | chr1_2:3168378-3168397 | Msa0049700:intron | 45.0% | |
CCAGAAGCTATAGTTCCTGA+AGG | + | chr1_2:3168396-3168415 | None:intergenic | 45.0% | |
CCTTCAGGAACTATAGCTTC+TGG | - | chr1_2:3168393-3168412 | Msa0049700:intron | 45.0% | |
CGTAGCTGAGATAGGAAATC+AGG | + | chr1_2:3168599-3168618 | None:intergenic | 45.0% | |
! | TCAAGAAGCGTAGCTGAGAT+AGG | + | chr1_2:3168607-3168626 | None:intergenic | 45.0% |
GAAGGAAATCAGCTATCAGC+AGG | - | chr1_2:3168778-3168797 | Msa0049700:intron | 45.0% | |
AGGAAATCAGCTATCAGCAG+GGG | - | chr1_2:3168780-3168799 | Msa0049700:intron | 45.0% | |
GGCGAATCCCTTCATAACAA+TGG | - | chr1_2:3168801-3168820 | Msa0049700:intron | 45.0% | |
! | AATTGTATTAGCTTCGCCGC+TGG | - | chr1_2:3169190-3169209 | Msa0049700:intron | 45.0% |
GAATTGATCCTGATAGCCAG+CGG | + | chr1_2:3169209-3169228 | None:intergenic | 45.0% | |
GAACGCACAAGGAGTTGTAT+TGG | + | chr1_2:3169231-3169250 | None:intergenic | 45.0% | |
ACTACAAGAGACACCAAGGT+AGG | - | chr1_2:3169561-3169580 | Msa0049700:intron | 45.0% | |
AAGAGACACCAAGGTAGGTT+TGG | - | chr1_2:3169566-3169585 | Msa0049700:intron | 45.0% | |
GTTTGGCCTGTGAATCAGAA+AGG | + | chr1_2:3170103-3170122 | None:intergenic | 45.0% | |
!! | TTGTGATGATGGCACCAACA+TGG | - | chr1_2:3170169-3170188 | Msa0049700:five_prime_UTR | 45.0% |
!!! | TTTAATATTTTTTTAGTTTT+GGG | + | chr1_2:3167783-3167802 | None:intergenic | 5.0% |
!!! | TTTTAATATTTTTTTAGTTT+TGG | + | chr1_2:3167784-3167803 | None:intergenic | 5.0% |
AATTTCTTAGGGGGGGAACC+TGG | + | chr1_2:3167563-3167582 | None:intergenic | 50.0% | |
TGGGATCAAGAGAAACTGGC+AGG | - | chr1_2:3168242-3168261 | Msa0049700:intron | 50.0% | |
GGCCTAAACTGCAGCTATGT+TGG | - | chr1_2:3168299-3168318 | Msa0049700:intron | 50.0% | |
ATGTTGGTACGGATTCGCCA+AGG | - | chr1_2:3168315-3168334 | Msa0049700:intron | 50.0% | |
TCGGCTCCTACCAATGTCAA+TGG | + | chr1_2:3169601-3169620 | None:intergenic | 50.0% | |
!! | GTTGTGGAGAAAGGAGCATC+TGG | - | chr1_2:3169881-3169900 | Msa0049700:intron | 50.0% |
! | GCATCTGGAACAGTCTACCA+TGG | - | chr1_2:3169896-3169915 | Msa0049700:CDS | 50.0% |
! | TTGCTGAGTTGGATGGGGGA+GGG | + | chr1_2:3167632-3167651 | None:intergenic | 55.0% |
! | TTTGCTGAGTTGGATGGGGG+AGG | + | chr1_2:3167633-3167652 | None:intergenic | 55.0% |
CTGGAACAGTCTACCATGGC+TGG | - | chr1_2:3169900-3169919 | Msa0049700:CDS | 55.0% | |
! | TGCTGAGTTGGATGGGGGAG+GGG | + | chr1_2:3167631-3167650 | None:intergenic | 60.0% |
! | TAGCTTCGCCGCTGGCTATC+AGG | - | chr1_2:3169198-3169217 | Msa0049700:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 3167096 | 3170199 | 3167096 | ID=Msa0049700;Name=Msa0049700 |
chr1_2 | mRNA | 3167096 | 3170199 | 3167096 | ID=Msa0049700-mRNA-1;Parent=Msa0049700;Name=Msa0049700-mRNA-1;_AED=0.21;_eAED=0.29;_QI=58|0|0|1|0.16|0|7|0|262 |
chr1_2 | exon | 3170026 | 3170199 | 3170026 | ID=Msa0049700-mRNA-1:exon:756;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3169883 | 3170004 | 3169883 | ID=Msa0049700-mRNA-1:exon:755;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3168947 | 3169031 | 3168947 | ID=Msa0049700-mRNA-1:exon:754;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3168809 | 3168895 | 3168809 | ID=Msa0049700-mRNA-1:exon:753;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3167713 | 3167871 | 3167713 | ID=Msa0049700-mRNA-1:exon:752;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3167295 | 3167427 | 3167295 | ID=Msa0049700-mRNA-1:exon:751;Parent=Msa0049700-mRNA-1 |
chr1_2 | exon | 3167096 | 3167179 | 3167096 | ID=Msa0049700-mRNA-1:exon:750;Parent=Msa0049700-mRNA-1 |
chr1_2 | five_prime_UTR | 3170142 | 3170199 | 3170142 | ID=Msa0049700-mRNA-1:five_prime_utr;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3170026 | 3170141 | 3170026 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3169883 | 3170004 | 3169883 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3168947 | 3169031 | 3168947 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3168809 | 3168895 | 3168809 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3167713 | 3167871 | 3167713 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3167295 | 3167427 | 3167295 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
chr1_2 | CDS | 3167096 | 3167179 | 3167096 | ID=Msa0049700-mRNA-1:cds;Parent=Msa0049700-mRNA-1 |
Gene Sequence |
Protein sequence |