Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051300 | XP_003589278.1 | 91.136 | 361 | 31 | 1 | 1 | 361 | 1 | 360 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051300 | sp|Q8RYD1|REM16_ARATH | 33.234 | 337 | 188 | 8 | 9 | 342 | 11 | 313 | 4.28e-53 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051300 | G7I577 | 91.136 | 361 | 31 | 1 | 1 | 361 | 1 | 360 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051300 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051300 | MtrunA17_Chr1g0154171 | 91.136 | 361 | 31 | 1 | 1 | 361 | 1 | 360 | 0.0 | 661 |
| Msa0051300 | MtrunA17_Chr1g0154191 | 72.460 | 374 | 80 | 4 | 6 | 362 | 5 | 372 | 0.0 | 548 |
| Msa0051300 | MtrunA17_Chr1g0154161 | 71.667 | 360 | 56 | 2 | 4 | 362 | 11 | 325 | 0.0 | 523 |
| Msa0051300 | MtrunA17_Chr1g0154211 | 59.950 | 397 | 115 | 5 | 1 | 355 | 1 | 395 | 1.21e-162 | 461 |
| Msa0051300 | MtrunA17_Chr1g0154151 | 66.978 | 321 | 86 | 7 | 38 | 354 | 19 | 323 | 3.77e-148 | 421 |
| Msa0051300 | MtrunA17_Chr1g0154111 | 58.743 | 366 | 126 | 6 | 6 | 353 | 9 | 367 | 1.33e-146 | 427 |
| Msa0051300 | MtrunA17_Chr1g0154111 | 58.173 | 208 | 69 | 3 | 38 | 227 | 368 | 575 | 2.17e-66 | 220 |
| Msa0051300 | MtrunA17_Chr1g0154131 | 61.696 | 342 | 94 | 5 | 7 | 348 | 168 | 472 | 2.64e-146 | 422 |
| Msa0051300 | MtrunA17_Chr1g0154131 | 72.671 | 161 | 37 | 2 | 6 | 160 | 9 | 168 | 2.64e-73 | 235 |
| Msa0051300 | MtrunA17_Chr1g0154101 | 50.111 | 449 | 123 | 5 | 7 | 357 | 168 | 613 | 1.92e-136 | 409 |
| Msa0051300 | MtrunA17_Chr1g0154101 | 73.913 | 161 | 36 | 1 | 6 | 160 | 8 | 168 | 2.78e-77 | 254 |
| Msa0051300 | MtrunA17_Chr1g0154101 | 36.812 | 345 | 204 | 7 | 20 | 358 | 503 | 839 | 1.24e-58 | 203 |
| Msa0051300 | MtrunA17_Chr1g0154071 | 51.648 | 364 | 135 | 6 | 11 | 350 | 145 | 491 | 6.87e-114 | 340 |
| Msa0051300 | MtrunA17_Chr1g0154071 | 73.485 | 132 | 34 | 1 | 3 | 134 | 8 | 138 | 1.67e-62 | 207 |
| Msa0051300 | MtrunA17_Chr1g0154241 | 58.759 | 274 | 63 | 6 | 6 | 239 | 5 | 268 | 5.24e-97 | 289 |
| Msa0051300 | MtrunA17_Chr1g0154251 | 43.704 | 405 | 156 | 12 | 6 | 343 | 10 | 409 | 1.25e-92 | 286 |
| Msa0051300 | MtrunA17_Chr1g0154041 | 38.904 | 365 | 181 | 13 | 20 | 362 | 252 | 596 | 3.63e-61 | 206 |
| Msa0051300 | MtrunA17_Chr1g0154041 | 34.551 | 356 | 201 | 5 | 22 | 355 | 15 | 360 | 1.46e-59 | 202 |
| Msa0051300 | MtrunA17_Chr7g0233561 | 24.850 | 334 | 202 | 8 | 21 | 343 | 16 | 311 | 6.76e-24 | 100 |
| Msa0051300 | MtrunA17_Chr3g0131891 | 25.220 | 341 | 182 | 10 | 21 | 343 | 17 | 302 | 1.15e-23 | 100 |
| Msa0051300 | MtrunA17_Chr1g0208771 | 24.340 | 341 | 192 | 13 | 27 | 348 | 1 | 294 | 1.44e-19 | 89.7 |
| Msa0051300 | MtrunA17_Chr7g0233541 | 25.155 | 322 | 180 | 10 | 39 | 343 | 2 | 279 | 1.54e-19 | 87.8 |
| Msa0051300 | MtrunA17_Chr1g0154121 | 41.000 | 100 | 48 | 2 | 274 | 362 | 2 | 101 | 1.23e-18 | 80.5 |
| Msa0051300 | MtrunA17_Chr8g0390841 | 23.662 | 355 | 198 | 15 | 16 | 348 | 32 | 335 | 2.87e-16 | 80.1 |
| Msa0051300 | MtrunA17_Chr7g0233571 | 26.087 | 207 | 144 | 3 | 16 | 219 | 3 | 203 | 1.59e-15 | 75.1 |
| Msa0051300 | MtrunA17_Chr7g0233531 | 37.333 | 75 | 47 | 0 | 39 | 113 | 2 | 76 | 5.48e-12 | 65.5 |
| Msa0051300 | MtrunA17_Chr1g0162441 | 40.506 | 79 | 47 | 0 | 35 | 113 | 19 | 97 | 1.39e-11 | 65.5 |
| Msa0051300 | MtrunA17_Chr5g0419201 | 29.921 | 127 | 84 | 1 | 23 | 144 | 16 | 142 | 1.90e-11 | 62.8 |
| Msa0051300 | MtrunA17_Chr4g0033961 | 36.667 | 90 | 57 | 0 | 23 | 112 | 6 | 95 | 9.37e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051300 | AT4G33280.1 | 33.234 | 337 | 188 | 8 | 9 | 342 | 11 | 313 | 4.35e-54 | 181 |
| Msa0051300 | AT4G33280.3 | 29.921 | 381 | 203 | 10 | 9 | 342 | 11 | 374 | 3.02e-48 | 168 |
| Msa0051300 | AT4G33280.2 | 49.390 | 164 | 71 | 4 | 9 | 171 | 11 | 163 | 5.14e-46 | 159 |
| Msa0051300 | AT3G18990.1 | 26.488 | 336 | 226 | 9 | 23 | 343 | 6 | 335 | 2.56e-25 | 105 |
| Msa0051300 | AT3G18990.2 | 27.193 | 342 | 216 | 11 | 23 | 343 | 6 | 335 | 3.54e-25 | 105 |
| Msa0051300 | AT4G34400.2 | 39.535 | 86 | 52 | 0 | 37 | 122 | 29 | 114 | 4.12e-18 | 85.5 |
| Msa0051300 | AT4G34400.1 | 39.535 | 86 | 52 | 0 | 37 | 122 | 29 | 114 | 4.12e-18 | 85.5 |
| Msa0051300 | AT3G06160.5 | 26.154 | 195 | 129 | 3 | 23 | 205 | 11 | 202 | 4.46e-16 | 78.6 |
| Msa0051300 | AT3G06160.4 | 26.154 | 195 | 129 | 3 | 23 | 205 | 11 | 202 | 4.46e-16 | 78.6 |
| Msa0051300 | AT3G06160.3 | 26.154 | 195 | 129 | 3 | 23 | 205 | 11 | 202 | 4.46e-16 | 78.6 |
| Msa0051300 | AT3G06160.1 | 26.154 | 195 | 129 | 3 | 23 | 205 | 26 | 217 | 4.60e-16 | 78.6 |
| Msa0051300 | AT3G06160.2 | 26.154 | 195 | 129 | 3 | 23 | 205 | 70 | 261 | 9.32e-16 | 78.2 |
| Msa0051300 | AT3G06220.1 | 33.333 | 90 | 58 | 1 | 23 | 112 | 11 | 98 | 1.94e-14 | 71.2 |
| Msa0051300 | AT5G66980.1 | 23.453 | 307 | 199 | 10 | 35 | 333 | 21 | 299 | 6.34e-14 | 72.4 |
| Msa0051300 | AT5G60130.5 | 40.449 | 89 | 48 | 2 | 37 | 120 | 27 | 115 | 2.19e-12 | 66.6 |
| Msa0051300 | AT5G60130.3 | 40.449 | 89 | 48 | 2 | 37 | 120 | 1 | 89 | 2.81e-12 | 67.0 |
| Msa0051300 | AT5G60130.2 | 40.449 | 89 | 48 | 2 | 37 | 120 | 27 | 115 | 3.03e-12 | 67.0 |
| Msa0051300 | AT5G60130.4 | 40.449 | 89 | 48 | 2 | 37 | 120 | 24 | 112 | 4.38e-12 | 66.6 |
| Msa0051300 | AT5G60130.1 | 40.449 | 89 | 48 | 2 | 37 | 120 | 27 | 115 | 4.55e-12 | 66.6 |
| Msa0051300 | AT3G53310.1 | 35.165 | 91 | 57 | 1 | 23 | 113 | 12 | 100 | 1.01e-11 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATGCAGGTTCATATATT+TGG | 0.155994 | 1_2:-5409221 | Msa0051300:CDS |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_2:+5411737 | None:intergenic |
| CTTCTTCTTGGTCCTCTTGC+TGG | 0.214523 | 1_2:+5411369 | None:intergenic |
| CGTGATAATGGCATCAATTT+TGG | 0.226290 | 1_2:-5409278 | Msa0051300:CDS |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5411751 | Msa0051300:CDS |
| ATAACCTTTGTTCGTGATAA+TGG | 0.267989 | 1_2:-5409290 | Msa0051300:CDS |
| GGTCGTCTTCCCCTCTTCTT+AGG | 0.269056 | 1_2:+5411319 | None:intergenic |
| TTTGAGGTCTTAATCTTTGA+TGG | 0.272020 | 1_2:-5411586 | Msa0051300:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_2:+5412515 | None:intergenic |
| TTCTTTAACAGGCTTCTTCT+TGG | 0.292612 | 1_2:+5411357 | None:intergenic |
| CATCCATCATGAAGAGAAAA+AGG | 0.293903 | 1_2:-5409658 | Msa0051300:CDS |
| CACAAGTCTCACAAGTTATC+AGG | 0.302645 | 1_2:+5409155 | None:intergenic |
| AGTGGAGTTGTGTGGGATAT+TGG | 0.305311 | 1_2:-5411724 | Msa0051300:CDS |
| CTTGGGAAGAAGATATTTAC+TGG | 0.326346 | 1_2:-5412584 | Msa0051300:CDS |
| TGCTTCCCCTGAGCAGTTCA+TGG | 0.329585 | 1_2:-5411440 | Msa0051300:CDS |
| GAAAGTATTGACAATCAAAA+TGG | 0.330748 | 1_2:-5409188 | Msa0051300:CDS |
| ACAGGTGTAACTTCTTTAAC+AGG | 0.338513 | 1_2:+5411346 | None:intergenic |
| CCCCTCTTCTTAGGCTGGAC+AGG | 0.370177 | 1_2:+5411328 | None:intergenic |
| GTGGAGTTGTGTGGGATATT+GGG | 0.385625 | 1_2:-5411723 | Msa0051300:CDS |
| AGCATTCCTCGTTTAGCATA+TGG | 0.394544 | 1_2:+5409335 | None:intergenic |
| GAAAAGAGGAAGTAAATGAT+TGG | 0.401129 | 1_2:+5409612 | None:intergenic |
| GTCTTCCCCTCTTCTTAGGC+TGG | 0.404393 | 1_2:+5411323 | None:intergenic |
| GCATTCCTCGTTTAGCATAT+GGG | 0.423038 | 1_2:+5409336 | None:intergenic |
| CTGTTTGAAATGGAAGTAGA+TGG | 0.435371 | 1_2:-5412615 | None:intergenic |
| GCATCAGCCATGAACTGCTC+AGG | 0.438299 | 1_2:+5411433 | None:intergenic |
| AAGTAGATGGAAGCAGATCT+TGG | 0.447214 | 1_2:-5412602 | Msa0051300:CDS |
| AACCGCTACAGGTGTGGTCT+TGG | 0.450397 | 1_2:+5411405 | None:intergenic |
| TTTAACAAAATATGGAAAAG+AGG | 0.455186 | 1_2:+5409598 | None:intergenic |
| TGTTTCTGATTATGTGATGC+AGG | 0.475973 | 1_2:-5409234 | Msa0051300:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_2:+5411738 | None:intergenic |
| TGAGAGATCACATGATTTGG+TGG | 0.481299 | 1_2:-5411278 | Msa0051300:CDS |
| AGCATATGGGACTGAGTTCA+CGG | 0.484588 | 1_2:+5409349 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1_2:-5411619 | Msa0051300:CDS |
| CAGGTTCATATATTTGGAGC+TGG | 0.498864 | 1_2:-5409215 | Msa0051300:CDS |
| TGTTGGTGGTTCGCGTACTC+TGG | 0.500388 | 1_2:-5409558 | Msa0051300:intron |
| AAAAGAGGAAGTAAATGATT+GGG | 0.501391 | 1_2:+5409613 | None:intergenic |
| CAATGGTGAATCACTCTTTG+AGG | 0.502205 | 1_2:-5411602 | Msa0051300:CDS |
| TCATATATTTGGAGCTGGAA+AGG | 0.506411 | 1_2:-5409210 | Msa0051300:CDS |
| AGATGATACTGTTTACTTCA+CGG | 0.508557 | 1_2:-5411689 | Msa0051300:CDS |
| AGTTGTGTGGGATATTGGGC+TGG | 0.514335 | 1_2:-5411719 | Msa0051300:CDS |
| AGTAGATGGAAGCAGATCTT+GGG | 0.514632 | 1_2:-5412601 | Msa0051300:CDS |
| GAAATTCAAGAGGCGAATGT+TGG | 0.522916 | 1_2:-5409373 | Msa0051300:CDS |
| TGATTTGGTGGTTTGTAACA+AGG | 0.529689 | 1_2:-5411266 | Msa0051300:CDS |
| CATCAGCCATGAACTGCTCA+GGG | 0.531256 | 1_2:+5411434 | None:intergenic |
| GTTTGTAACAAGGAACGCTC+AGG | 0.544873 | 1_2:-5411256 | Msa0051300:intron |
| ACCTGTCCAGCCTAAGAAGA+GGG | 0.545889 | 1_2:-5411329 | Msa0051300:CDS |
| CTGTTTACTTCACGGACGGT+TGG | 0.547363 | 1_2:-5411681 | Msa0051300:CDS |
| ATATCCCACACAACTCCACT+AGG | 0.550354 | 1_2:+5411727 | None:intergenic |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1_2:+5411617 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.558725 | 1_2:-5411732 | Msa0051300:CDS |
| AACTGAACAAGGGGATAGCA+AGG | 0.567712 | 1_2:-5411506 | Msa0051300:CDS |
| GGACATGCTCAAACTGAACA+AGG | 0.584733 | 1_2:-5411517 | Msa0051300:CDS |
| AGGTCCTAGTGGAGTTGTGT+GGG | 0.591978 | 1_2:-5411731 | Msa0051300:CDS |
| GATGCCATTATCACGAACAA+AGG | 0.595838 | 1_2:+5409286 | None:intergenic |
| GTTACGCTTCGAAATTCAAG+AGG | 0.604672 | 1_2:-5409383 | Msa0051300:CDS |
| CACCTGTCCAGCCTAAGAAG+AGG | 0.605159 | 1_2:-5411330 | Msa0051300:CDS |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_2:+5412518 | None:intergenic |
| GGAGGGAACCGCTACAGGTG+TGG | 0.623638 | 1_2:+5411399 | None:intergenic |
| CACCAAGACCACACCTGTAG+CGG | 0.625758 | 1_2:-5411407 | Msa0051300:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5411742 | Msa0051300:CDS |
| ACAAGGGGATAGCAAGGCAA+AGG | 0.631522 | 1_2:-5411500 | Msa0051300:CDS |
| GATACTGTTTACTTCACGGA+CGG | 0.631641 | 1_2:-5411685 | Msa0051300:CDS |
| ACATGCTCAAACTGAACAAG+GGG | 0.633900 | 1_2:-5411515 | Msa0051300:CDS |
| GACATGCTCAAACTGAACAA+GGG | 0.641869 | 1_2:-5411516 | Msa0051300:CDS |
| GTGCAGCAGTGAAACGACGC+GGG | 0.645296 | 1_2:+5409429 | None:intergenic |
| CCTGTCCAGCCTAAGAAGAG+GGG | 0.690066 | 1_2:-5411328 | Msa0051300:CDS |
| ATCAGCCATGAACTGCTCAG+GGG | 0.726483 | 1_2:+5411435 | None:intergenic |
| TCAGTCCCATATGCTAAACG+AGG | 0.734975 | 1_2:-5409341 | Msa0051300:CDS |
| TGTGCAGCAGTGAAACGACG+CGG | 0.757873 | 1_2:+5409428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTAAACCTTTATA+AGG | - | chr1_2:5409322-5409341 | Msa0051300:CDS | 10.0% |
| !! | GTATAAAATATAAAAAATCA+TGG | + | chr1_2:5409505-5409524 | None:intergenic | 10.0% |
| !!! | TTAAGTATTTTAACAAAATA+TGG | + | chr1_2:5412182-5412201 | None:intergenic | 10.0% |
| !! | TTTGTTAAAATACTTAAAAA+CGG | - | chr1_2:5412185-5412204 | Msa0051300:intron | 10.0% |
| !!! | TTAATTTTTATTAACATGGA+AGG | + | chr1_2:5409313-5409332 | None:intergenic | 15.0% |
| !!! | AGGTTTAATTTTTATTAACA+TGG | + | chr1_2:5409317-5409336 | None:intergenic | 15.0% |
| !! | AGATACAAAATTTAAAAGAT+GGG | + | chr1_2:5409390-5409409 | None:intergenic | 15.0% |
| !! | AAGATACAAAATTTAAAAGA+TGG | + | chr1_2:5409391-5409410 | None:intergenic | 15.0% |
| !!! | TAATTAAGTTGATTGTTTAA+AGG | - | chr1_2:5409615-5409634 | Msa0051300:CDS | 15.0% |
| !! | ATTACAAACTTTGTAATTTA+AGG | - | chr1_2:5409769-5409788 | Msa0051300:intron | 15.0% |
| !! | AGTTTAATAGGAAAAATTAA+GGG | + | chr1_2:5410652-5410671 | None:intergenic | 15.0% |
| !! | AAAAAGAGAAAAAGAATGAA+GGG | + | chr1_2:5409286-5409305 | None:intergenic | 20.0% |
| !! | TAAAAAGAGAAAAAGAATGA+AGG | + | chr1_2:5409287-5409306 | None:intergenic | 20.0% |
| !!! | TTTATAAGGTTTTCATACTT+GGG | - | chr1_2:5409336-5409355 | Msa0051300:CDS | 20.0% |
| !! | TTGTTTAAAGGAATTGAATA+AGG | - | chr1_2:5409627-5409646 | Msa0051300:CDS | 20.0% |
| !!! | GAAATTTATATTTTAACTGC+AGG | - | chr1_2:5409954-5409973 | Msa0051300:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5409985-5410004 | None:intergenic | 20.0% |
| !! | GAGTTTAATAGGAAAAATTA+AGG | + | chr1_2:5410653-5410672 | None:intergenic | 20.0% |
| !! | TGTTAGTAATGTTAATGTTA+TGG | + | chr1_2:5411093-5411112 | None:intergenic | 20.0% |
| !! | TAACATTACTAACATTACTA+TGG | - | chr1_2:5411099-5411118 | Msa0051300:intron | 20.0% |
| !! | TAGTAATGTTAGTAATGTTA+TGG | + | chr1_2:5411099-5411118 | None:intergenic | 20.0% |
| !! | TAACATTACTAACATTACTA+TGG | - | chr1_2:5411099-5411118 | Msa0051300:intron | 20.0% |
| !!! | TTTTCATACATGTTATTGAA+AGG | + | chr1_2:5411972-5411991 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1_2:5412174-5412193 | None:intergenic | 20.0% |
| !! | ACGTAACTTAAAGATAAAAA+GGG | + | chr1_2:5412246-5412265 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAATTGGGTGAAA+TGG | + | chr1_2:5409228-5409247 | None:intergenic | 25.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | + | chr1_2:5409257-5409276 | None:intergenic | 25.0% |
| ! | CAAGTATGAAAACCTTATAA+AGG | + | chr1_2:5409337-5409356 | None:intergenic | 25.0% |
| !! | CTTTATAAGGTTTTCATACT+TGG | - | chr1_2:5409335-5409354 | Msa0051300:CDS | 25.0% |
| !!! | AGTTTTGAGCTTTTGATTTT+TGG | - | chr1_2:5409450-5409469 | Msa0051300:intron | 25.0% |
| !! | CTTTGTAATTTAAGGTTACA+AGG | - | chr1_2:5409777-5409796 | Msa0051300:intron | 25.0% |
| !! | ATGTATCTTTTAATCTCAGA+TGG | - | chr1_2:5409932-5409951 | Msa0051300:intron | 25.0% |
| !!! | TCAAAAGAATTAGCTGTTTT+TGG | + | chr1_2:5410474-5410493 | None:intergenic | 25.0% |
| ! | AATAGGAAAAATTAAGGGAA+AGG | + | chr1_2:5410647-5410666 | None:intergenic | 25.0% |
| ! | TGTTTATGTTGAAGATGTTA+TGG | + | chr1_2:5411265-5411284 | None:intergenic | 25.0% |
| ! | TGTTTATGTTGAAGATGTTA+TGG | + | chr1_2:5411265-5411284 | None:intergenic | 25.0% |
| ! | TGTTTATGTTGAAGATGTTA+TGG | + | chr1_2:5411265-5411284 | None:intergenic | 25.0% |
| ! | CAATCATGAGTTTGAATAAA+AGG | + | chr1_2:5412070-5412089 | None:intergenic | 25.0% |
| ! | AAAAGAGGAAGTAAATGATT+GGG | + | chr1_2:5412159-5412178 | None:intergenic | 25.0% |
| ! | CACGTAACTTAAAGATAAAA+AGG | + | chr1_2:5412247-5412266 | None:intergenic | 25.0% |
| !!! | GAAAGTATTGACAATCAAAA+TGG | - | chr1_2:5412581-5412600 | Msa0051300:CDS | 25.0% |
| !!! | GGTGGTAGTTTTAAGAAATT+GGG | + | chr1_2:5409236-5409255 | None:intergenic | 30.0% |
| !!! | TGGTGGTAGTTTTAAGAAAT+TGG | + | chr1_2:5409237-5409256 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | + | chr1_2:5409254-5409273 | None:intergenic | 30.0% |
| TAAGGCGATTGATTAGTAAA+AGG | - | chr1_2:5409645-5409664 | Msa0051300:CDS | 30.0% | |
| ! | TATGATTTTTCTCCTTTGCT+AGG | + | chr1_2:5409685-5409704 | None:intergenic | 30.0% |
| GAACTAACGTACTAATTAGT+TGG | + | chr1_2:5409708-5409727 | None:intergenic | 30.0% | |
| AAATAGTTATGAGAAGCTCT+TGG | - | chr1_2:5409866-5409885 | Msa0051300:intron | 30.0% | |
| AATAGTTATGAGAAGCTCTT+GGG | - | chr1_2:5409867-5409886 | Msa0051300:intron | 30.0% | |
| AGATGATACTGTTTACTTCA+CGG | - | chr1_2:5410080-5410099 | Msa0051300:intron | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_2:5410150-5410169 | Msa0051300:intron | 30.0% | |
| ! | TTTGAGGTCTTAATCTTTGA+TGG | - | chr1_2:5410183-5410202 | Msa0051300:intron | 30.0% |
| !!! | AAGGCAACTTCTTATTTTGT+GGG | - | chr1_2:5410222-5410241 | Msa0051300:intron | 30.0% |
| !!! | TCTTATTTTGTGGGAAAATG+TGG | - | chr1_2:5410231-5410250 | Msa0051300:intron | 30.0% |
| !! | TTTTGAGAGATCACATGATT+TGG | - | chr1_2:5410488-5410507 | Msa0051300:intron | 30.0% |
| ! | TTCACTCTAGAGAGTTTAAT+AGG | + | chr1_2:5410664-5410683 | None:intergenic | 30.0% |
| TAGAGTGAAGTAATTGTTAG+CGG | - | chr1_2:5410675-5410694 | Msa0051300:intron | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | - | chr1_2:5410742-5410761 | Msa0051300:intron | 30.0% | |
| TATAGGGTATATAGATAGGA+AGG | + | chr1_2:5410866-5410885 | None:intergenic | 30.0% | |
| GGTATATAGGGTATATAGAT+AGG | + | chr1_2:5410870-5410889 | None:intergenic | 30.0% | |
| AACATTACTATGGTTACATG+AGG | - | chr1_2:5411109-5411128 | Msa0051300:intron | 30.0% | |
| GATGATATGAGATTACTGTA+TGG | + | chr1_2:5411159-5411178 | None:intergenic | 30.0% | |
| TACTGTAGTTGAAGATGTTA+TGG | + | chr1_2:5411190-5411209 | None:intergenic | 30.0% | |
| TACTGTAGTTGAAGATGTTA+TGG | + | chr1_2:5411190-5411209 | None:intergenic | 30.0% | |
| !! | AATTATTTTTCCTCCTTTCG+TGG | - | chr1_2:5411290-5411309 | Msa0051300:CDS | 30.0% |
| !! | ATTATTTTTCCTCCTTTCGT+GGG | - | chr1_2:5411291-5411310 | Msa0051300:CDS | 30.0% |
| AACATTACTATGGTTACATG+AGG | - | chr1_2:5411109-5411128 | Msa0051300:intron | 30.0% | |
| TACTGTAGTTGAAGATGTTA+TGG | + | chr1_2:5411190-5411209 | None:intergenic | 30.0% | |
| TACTGTAGTTGAAGATGTTA+TGG | + | chr1_2:5411190-5411209 | None:intergenic | 30.0% | |
| TACTGTAGTTGAAGATGTTA+TGG | + | chr1_2:5411190-5411209 | None:intergenic | 30.0% | |
| !! | AATTATTTTTCCTCCTTTCG+TGG | - | chr1_2:5411290-5411309 | Msa0051300:CDS | 30.0% |
| !! | ATTATTTTTCCTCCTTTCGT+GGG | - | chr1_2:5411291-5411310 | Msa0051300:CDS | 30.0% |
| TCATACATGTTATTGAAAGG+AGG | + | chr1_2:5411969-5411988 | None:intergenic | 30.0% | |
| GAAAAGAGGAAGTAAATGAT+TGG | + | chr1_2:5412160-5412179 | None:intergenic | 30.0% | |
| ATACTTAAAAACGGCAATGT+TGG | - | chr1_2:5412194-5412213 | Msa0051300:intron | 30.0% | |
| ATAACCTTTGTTCGTGATAA+TGG | - | chr1_2:5412479-5412498 | Msa0051300:intron | 30.0% | |
| CTTGGGAAGAAGATATTTAC+TGG | - | chr1_2:5409185-5409204 | Msa0051300:CDS | 35.0% | |
| AATCATCTCAAGTACACTTG+AGG | + | chr1_2:5409828-5409847 | None:intergenic | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_2:5410155-5410174 | None:intergenic | 35.0% | |
| ! | TGGAGATAACTTTTGTGAGA+AGG | - | chr1_2:5410203-5410222 | Msa0051300:intron | 35.0% |
| !!! | GAAGGCAACTTCTTATTTTG+TGG | - | chr1_2:5410221-5410240 | Msa0051300:intron | 35.0% |
| !! | AACACTTCTGCTTTTAATGC+TGG | - | chr1_2:5410297-5410316 | Msa0051300:intron | 35.0% |
| TTCTTTAACAGGCTTCTTCT+TGG | + | chr1_2:5410415-5410434 | None:intergenic | 35.0% | |
| ACAGGTGTAACTTCTTTAAC+AGG | + | chr1_2:5410426-5410445 | None:intergenic | 35.0% | |
| !! | TGATTTGGTGGTTTGTAACA+AGG | - | chr1_2:5410503-5410522 | Msa0051300:intron | 35.0% |
| TTAACTCATCCCTACAAAAC+CGG | + | chr1_2:5410789-5410808 | None:intergenic | 35.0% | |
| AATATTGAAGATGTGCGTGA+GGG | + | chr1_2:5410978-5410997 | None:intergenic | 35.0% | |
| AATATTGAAGATGTGCGTGA+GGG | + | chr1_2:5410978-5410997 | None:intergenic | 35.0% | |
| TAGATAGGATTCTTCCTATC+TGG | - | chr1_2:5411416-5411435 | Msa0051300:CDS | 35.0% | |
| AATATTGAAGATGTGCGTGA+GGG | + | chr1_2:5410978-5410997 | None:intergenic | 35.0% | |
| CTAACACTCGGTATATAGAT+AGG | - | chr1_2:5411799-5411818 | Msa0051300:intron | 35.0% | |
| TAGATAGGATTCTTCCTATC+TGG | - | chr1_2:5411416-5411435 | Msa0051300:CDS | 35.0% | |
| AATATTGAAGATGTGCGAGA+GGG | + | chr1_2:5411887-5411906 | None:intergenic | 35.0% | |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1_2:5412043-5412062 | None:intergenic | 35.0% |
| ! | AAGACAAGTATCAGTTTGCT+AGG | + | chr1_2:5412044-5412063 | None:intergenic | 35.0% |
| CATCCATCATGAAGAGAAAA+AGG | - | chr1_2:5412111-5412130 | Msa0051300:intron | 35.0% | |
| ! | CTTCCTTTTTCTCTTCATGA+TGG | + | chr1_2:5412117-5412136 | None:intergenic | 35.0% |
| CATCATGAAGAGAAAAAGGA+AGG | - | chr1_2:5412115-5412134 | Msa0051300:intron | 35.0% | |
| !!! | CGTGATAATGGCATCAATTT+TGG | - | chr1_2:5412491-5412510 | Msa0051300:intron | 35.0% |
| ! | TGTTTCTGATTATGTGATGC+AGG | - | chr1_2:5412535-5412554 | Msa0051300:CDS | 35.0% |
| GTGATGCAGGTTCATATATT+TGG | - | chr1_2:5412548-5412567 | Msa0051300:CDS | 35.0% | |
| ! | TCATATATTTGGAGCTGGAA+AGG | - | chr1_2:5412559-5412578 | Msa0051300:CDS | 35.0% |
| AAGTAGATGGAAGCAGATCT+TGG | - | chr1_2:5409167-5409186 | Msa0051300:CDS | 40.0% | |
| AGTAGATGGAAGCAGATCTT+GGG | - | chr1_2:5409168-5409187 | Msa0051300:CDS | 40.0% | |
| TACACACAGATATGCTAGAG+TGG | - | chr1_2:5409522-5409541 | Msa0051300:intron | 40.0% | |
| AGCTGTAGATCTGTATGCTT+TGG | - | chr1_2:5409563-5409582 | Msa0051300:CDS | 40.0% | |
| CTTTGCTAGGATTTGAACTC+GGG | + | chr1_2:5409672-5409691 | None:intergenic | 40.0% | |
| CCTTTGCTAGGATTTGAACT+CGG | + | chr1_2:5409673-5409692 | None:intergenic | 40.0% | |
| CAGAAGAGTCTAAGAGATGT+TGG | + | chr1_2:5409908-5409927 | None:intergenic | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5410021-5410040 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5410018-5410037 | Msa0051300:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_2:5410034-5410053 | None:intergenic | 40.0% | |
| GATACTGTTTACTTCACGGA+CGG | - | chr1_2:5410084-5410103 | Msa0051300:intron | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_2:5410167-5410186 | Msa0051300:intron | 40.0% | |
| GACATGCTCAAACTGAACAA+GGG | - | chr1_2:5410253-5410272 | Msa0051300:intron | 40.0% | |
| ACATGCTCAAACTGAACAAG+GGG | - | chr1_2:5410254-5410273 | Msa0051300:intron | 40.0% | |
| ! | TGAGAGATCACATGATTTGG+TGG | - | chr1_2:5410491-5410510 | Msa0051300:intron | 40.0% |
| TGGCAAGTTAGTTAGAGAGA+GGG | + | chr1_2:5410601-5410620 | None:intergenic | 40.0% | |
| !! | AAATACAAGAGAGCGTTTGC+TGG | + | chr1_2:5410621-5410640 | None:intergenic | 40.0% |
| ! | GCAAACGCTCTCTTGTATTT+TGG | - | chr1_2:5410621-5410640 | Msa0051300:intron | 40.0% |
| GAATCCTATCTATCCGATGT+GGG | + | chr1_2:5410723-5410742 | None:intergenic | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | + | chr1_2:5410724-5410743 | None:intergenic | 40.0% | |
| ! | TCATCGAGGGGTATATAGAT+AGG | + | chr1_2:5410832-5410851 | None:intergenic | 40.0% |
| ATACCCTATATACCGAGTGT+TGG | - | chr1_2:5410876-5410895 | Msa0051300:intron | 40.0% | |
| ATATTGAAGATGTGCGTGAG+GGG | + | chr1_2:5410977-5410996 | None:intergenic | 40.0% | |
| GAATATTGAAGATGTGCGTG+AGG | + | chr1_2:5410979-5410998 | None:intergenic | 40.0% | |
| ATTCGTTACATACCGAGTGT+TGG | - | chr1_2:5410995-5411014 | Msa0051300:intron | 40.0% | |
| ATATTGAAGATGTGCGTGAG+GGG | + | chr1_2:5410977-5410996 | None:intergenic | 40.0% | |
| GAATATTGAAGATGTGCGTG+AGG | + | chr1_2:5410979-5410998 | None:intergenic | 40.0% | |
| CCTATCTATATACCGAGTGT+TGG | + | chr1_2:5411377-5411396 | None:intergenic | 40.0% | |
| CCAACACTCGGTATATAGAT+AGG | - | chr1_2:5411374-5411393 | Msa0051300:CDS | 40.0% | |
| CACTCGGTATATAGATAGGA+AGG | - | chr1_2:5411378-5411397 | Msa0051300:CDS | 40.0% | |
| CCTATCTATATACCGAGTGT+TGG | + | chr1_2:5411377-5411396 | None:intergenic | 40.0% | |
| CCAACACTCGGTATATAGAT+AGG | - | chr1_2:5411374-5411393 | Msa0051300:CDS | 40.0% | |
| ATATTGAAGATGTGCGTGAG+GGG | + | chr1_2:5410977-5410996 | None:intergenic | 40.0% | |
| GAATATTGAAGATGTGCGTG+AGG | + | chr1_2:5410979-5410998 | None:intergenic | 40.0% | |
| CACTCGGTATATAGATAGGA+AGG | - | chr1_2:5411378-5411397 | Msa0051300:CDS | 40.0% | |
| CCTATCTATATACCGAGTGT+TGG | + | chr1_2:5411377-5411396 | None:intergenic | 40.0% | |
| CCAACACTCGGTATATAGAT+AGG | - | chr1_2:5411374-5411393 | Msa0051300:CDS | 40.0% | |
| ATATTGAAGATGTGCGAGAG+GGG | + | chr1_2:5411886-5411905 | None:intergenic | 40.0% | |
| GAATATTGAAGATGTGCGAG+AGG | + | chr1_2:5411888-5411907 | None:intergenic | 40.0% | |
| CTTAAAAACGGCAATGTTGG+TGG | - | chr1_2:5412197-5412216 | Msa0051300:intron | 40.0% | |
| TGCTTGACAAACTGATCGTT+TGG | - | chr1_2:5412281-5412300 | Msa0051300:intron | 40.0% | |
| ! | TAACTTCTGTTTTGTCGTCG+GGG | + | chr1_2:5412370-5412389 | None:intergenic | 40.0% |
| ! | GTAACTTCTGTTTTGTCGTC+GGG | + | chr1_2:5412371-5412390 | None:intergenic | 40.0% |
| ! | CGTAACTTCTGTTTTGTCGT+CGG | + | chr1_2:5412372-5412391 | None:intergenic | 40.0% |
| GTTACGCTTCGAAATTCAAG+AGG | - | chr1_2:5412386-5412405 | Msa0051300:intron | 40.0% | |
| GAAATTCAAGAGGCGAATGT+TGG | - | chr1_2:5412396-5412415 | Msa0051300:intron | 40.0% | |
| GCATTCCTCGTTTAGCATAT+GGG | + | chr1_2:5412436-5412455 | None:intergenic | 40.0% | |
| AGCATTCCTCGTTTAGCATA+TGG | + | chr1_2:5412437-5412456 | None:intergenic | 40.0% | |
| ! | GAATGCTTCACACCTTTTGT+GGG | - | chr1_2:5412450-5412469 | Msa0051300:intron | 40.0% |
| ! | AATGCTTCACACCTTTTGTG+GGG | - | chr1_2:5412451-5412470 | Msa0051300:intron | 40.0% |
| GATGCCATTATCACGAACAA+AGG | + | chr1_2:5412486-5412505 | None:intergenic | 40.0% | |
| ! | CAGGTTCATATATTTGGAGC+TGG | - | chr1_2:5412554-5412573 | Msa0051300:CDS | 40.0% |
| CCGAGTTCAAATCCTAGCAA+AGG | - | chr1_2:5409670-5409689 | Msa0051300:intron | 45.0% | |
| ! | CACTTGAGGTGTTATCTCAG+TGG | + | chr1_2:5409814-5409833 | None:intergenic | 45.0% |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5410035-5410054 | None:intergenic | 45.0% | |
| ATATCCCACACAACTCCACT+AGG | + | chr1_2:5410045-5410064 | None:intergenic | 45.0% | |
| AGTGGAGTTGTGTGGGATAT+TGG | - | chr1_2:5410045-5410064 | Msa0051300:intron | 45.0% | |
| GTGGAGTTGTGTGGGATATT+GGG | - | chr1_2:5410046-5410065 | Msa0051300:intron | 45.0% | |
| GGACATGCTCAAACTGAACA+AGG | - | chr1_2:5410252-5410271 | Msa0051300:intron | 45.0% | |
| AACTGAACAAGGGGATAGCA+AGG | - | chr1_2:5410263-5410282 | Msa0051300:intron | 45.0% | |
| !!! | CTCTTGCTGGTTTTTTGGGA+GGG | + | chr1_2:5410390-5410409 | None:intergenic | 45.0% |
| !!! | GGTCCTCTTGCTGGTTTTTT+GGG | + | chr1_2:5410394-5410413 | None:intergenic | 45.0% |
| !!! | TGGTCCTCTTGCTGGTTTTT+TGG | + | chr1_2:5410395-5410414 | None:intergenic | 45.0% |
| GTTTGTAACAAGGAACGCTC+AGG | - | chr1_2:5410513-5410532 | Msa0051300:intron | 45.0% | |
| CTGGCAAGTTAGTTAGAGAG+AGG | + | chr1_2:5410602-5410621 | None:intergenic | 45.0% | |
| AATTGTTAGCGGCCAACACT+CGG | - | chr1_2:5410686-5410705 | Msa0051300:intron | 45.0% | |
| TAGTCCCACATCGGATAGAT+AGG | - | chr1_2:5410716-5410735 | Msa0051300:intron | 45.0% | |
| GAGTTAAGCCTCGATAGTGT+TGG | - | chr1_2:5410802-5410821 | Msa0051300:intron | 45.0% | |
| ! | CGAGGGGTATATAGATAGGA+AGG | + | chr1_2:5410828-5410847 | None:intergenic | 45.0% |
| TCGGTATATAGGGTACGTGA+GGG | + | chr1_2:5410925-5410944 | None:intergenic | 45.0% | |
| GTACCCTATATACCGAGTGT+TGG | - | chr1_2:5410929-5410948 | Msa0051300:intron | 45.0% | |
| TATTGAAGATGTGCGTGAGG+GGG | + | chr1_2:5410976-5410995 | None:intergenic | 45.0% | |
| TATTGAAGATGTGCGTGAGG+GGG | + | chr1_2:5410976-5410995 | None:intergenic | 45.0% | |
| TAGATAGGAAGGCCAACACT+CGG | - | chr1_2:5411389-5411408 | Msa0051300:CDS | 45.0% | |
| TCTTCCTATCTGGCCAATAG+CGG | - | chr1_2:5411426-5411445 | Msa0051300:CDS | 45.0% | |
| TATTGAAGATGTGCGTGAGG+GGG | + | chr1_2:5410976-5410995 | None:intergenic | 45.0% | |
| TAGATAGGAAGGCCAACACT+CGG | - | chr1_2:5411389-5411408 | Msa0051300:CDS | 45.0% | |
| TCTTCCTATCTGGCCAATAG+CGG | - | chr1_2:5411426-5411445 | Msa0051300:CDS | 45.0% | |
| TATTGAAGATGTGCGAGAGG+GGG | + | chr1_2:5411885-5411904 | None:intergenic | 45.0% | |
| AGCATATGGGACTGAGTTCA+CGG | + | chr1_2:5412423-5412442 | None:intergenic | 45.0% | |
| TCAGTCCCATATGCTAAACG+AGG | - | chr1_2:5412428-5412447 | Msa0051300:intron | 45.0% | |
| ! | GGAATGCTTCACACCTTTTG+TGG | - | chr1_2:5412449-5412468 | Msa0051300:intron | 45.0% |
| ! | ATGCTTCACACCTTTTGTGG+GGG | - | chr1_2:5412452-5412471 | Msa0051300:intron | 45.0% |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5410027-5410046 | Msa0051300:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_2:5410037-5410056 | Msa0051300:intron | 50.0% | |
| AGGTCCTAGTGGAGTTGTGT+GGG | - | chr1_2:5410038-5410057 | Msa0051300:intron | 50.0% | |
| AGTTGTGTGGGATATTGGGC+TGG | - | chr1_2:5410050-5410069 | Msa0051300:intron | 50.0% | |
| CTGTTTACTTCACGGACGGT+TGG | - | chr1_2:5410088-5410107 | Msa0051300:intron | 50.0% | |
| ACAAGGGGATAGCAAGGCAA+AGG | - | chr1_2:5410269-5410288 | Msa0051300:intron | 50.0% | |
| ATCAGCCATGAACTGCTCAG+GGG | + | chr1_2:5410337-5410356 | None:intergenic | 50.0% | |
| CATCAGCCATGAACTGCTCA+GGG | + | chr1_2:5410338-5410357 | None:intergenic | 50.0% | |
| !!! | CCTCTTGCTGGTTTTTTGGG+AGG | + | chr1_2:5410391-5410410 | None:intergenic | 50.0% |
| CCTCCCAAAAAACCAGCAAG+AGG | - | chr1_2:5410388-5410407 | Msa0051300:intron | 50.0% | |
| CTTCTTCTTGGTCCTCTTGC+TGG | + | chr1_2:5410403-5410422 | None:intergenic | 50.0% | |
| ACCTGTCCAGCCTAAGAAGA+GGG | - | chr1_2:5410440-5410459 | Msa0051300:intron | 50.0% | |
| GACTAAATCCCACCGAGTGT+TGG | + | chr1_2:5410701-5410720 | None:intergenic | 50.0% | |
| GGTGGGATTTAGTCCCACAT+CGG | - | chr1_2:5410707-5410726 | Msa0051300:intron | 50.0% | |
| !! | ACCGTACAAGCCGGTTTTGT+AGG | - | chr1_2:5410776-5410795 | Msa0051300:intron | 50.0% |
| !! | CCCTACAAAACCGGCTTGTA+CGG | + | chr1_2:5410780-5410799 | None:intergenic | 50.0% |
| !! | CCGTACAAGCCGGTTTTGTA+GGG | - | chr1_2:5410777-5410796 | Msa0051300:intron | 50.0% |
| TAGGAAGGCCAACACTATCG+AGG | + | chr1_2:5410813-5410832 | None:intergenic | 50.0% | |
| ACCCCTCGATGAGATAGTGT+TGG | - | chr1_2:5410840-5410859 | Msa0051300:intron | 50.0% | |
| GCCAACACTATCTCATCGAG+GGG | + | chr1_2:5410844-5410863 | None:intergenic | 50.0% | |
| GGCCAACACTATCTCATCGA+GGG | + | chr1_2:5410845-5410864 | None:intergenic | 50.0% | |
| AGGCCAACACTATCTCATCG+AGG | + | chr1_2:5410846-5410865 | None:intergenic | 50.0% | |
| CGGCCAACACTCGGTATATA+GGG | + | chr1_2:5411371-5411390 | None:intergenic | 50.0% | |
| GGTGTGTTAGCGACCAATAG+CGG | + | chr1_2:5410902-5410921 | None:intergenic | 50.0% | |
| GGTATATAGGGTACGTGAGG+GGG | + | chr1_2:5410923-5410942 | None:intergenic | 50.0% | |
| CGGTATATAGGGTACGTGAG+GGG | + | chr1_2:5410924-5410943 | None:intergenic | 50.0% | |
| CTCGGTATATAGGGTACGTG+AGG | + | chr1_2:5410926-5410945 | None:intergenic | 50.0% | |
| CGGCCAACACTCGGTATATA+GGG | + | chr1_2:5411371-5411390 | None:intergenic | 50.0% | |
| GGTGTGTTAGCGACCAATAG+CGG | + | chr1_2:5410902-5410921 | None:intergenic | 50.0% | |
| GGTGTGTTAGCGACCAATAG+CGG | + | chr1_2:5410902-5410921 | None:intergenic | 50.0% | |
| GGACTAAATCCCACGAAAGG+AGG | + | chr1_2:5411303-5411322 | None:intergenic | 50.0% | |
| ! | CGTGGACTAAATCCCACGAA+AGG | + | chr1_2:5411306-5411325 | None:intergenic | 50.0% |
| TGGGATTTAGTCCACGCTTC+AGG | - | chr1_2:5411310-5411329 | Msa0051300:CDS | 50.0% | |
| TTAGCCGCTATTGGCCAGAT+AGG | + | chr1_2:5411433-5411452 | None:intergenic | 50.0% | |
| GGACTAAATCCCACGAAAGG+AGG | + | chr1_2:5411303-5411322 | None:intergenic | 50.0% | |
| ! | CGTGGACTAAATCCCACGAA+AGG | + | chr1_2:5411306-5411325 | None:intergenic | 50.0% |
| TGGGATTTAGTCCACGCTTC+AGG | - | chr1_2:5411310-5411329 | Msa0051300:CDS | 50.0% | |
| GTGTGTTAGCGGCTAACACT+CGG | - | chr1_2:5411787-5411806 | Msa0051300:CDS | 50.0% | |
| TTAGCCGCTATTGGCCAGAT+AGG | + | chr1_2:5411433-5411452 | None:intergenic | 50.0% | |
| ! | TTCACACCTTTTGTGGGGGA+TGG | - | chr1_2:5412456-5412475 | Msa0051300:intron | 50.0% |
| GGTTATCCATCCCCCACAAA+AGG | + | chr1_2:5412465-5412484 | None:intergenic | 50.0% | |
| TGCTTCCCCTGAGCAGTTCA+TGG | - | chr1_2:5410329-5410348 | Msa0051300:intron | 55.0% | |
| GCATCAGCCATGAACTGCTC+AGG | + | chr1_2:5410339-5410358 | None:intergenic | 55.0% | |
| CACCAAGACCACACCTGTAG+CGG | - | chr1_2:5410362-5410381 | Msa0051300:intron | 55.0% | |
| AACCGCTACAGGTGTGGTCT+TGG | + | chr1_2:5410367-5410386 | None:intergenic | 55.0% | |
| !! | TTTTGGGAGGGAACCGCTAC+AGG | + | chr1_2:5410378-5410397 | None:intergenic | 55.0% |
| CACCTGTCCAGCCTAAGAAG+AGG | - | chr1_2:5410439-5410458 | Msa0051300:intron | 55.0% | |
| CCTGTCCAGCCTAAGAAGAG+GGG | - | chr1_2:5410441-5410460 | Msa0051300:intron | 55.0% | |
| GTCTTCCCCTCTTCTTAGGC+TGG | + | chr1_2:5410449-5410468 | None:intergenic | 55.0% | |
| GGTCGTCTTCCCCTCTTCTT+AGG | + | chr1_2:5410453-5410472 | None:intergenic | 55.0% | |
| ACACTCCTCACCGTACAAGC+CGG | - | chr1_2:5410767-5410786 | Msa0051300:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | + | chr1_2:5410775-5410794 | None:intergenic | 55.0% |
| GCGGCCAACACTCGGTATAT+AGG | + | chr1_2:5411370-5411389 | None:intergenic | 55.0% | |
| !! | TACCGAGTGTTGGCCGCTAT+TGG | - | chr1_2:5410886-5410905 | Msa0051300:intron | 55.0% |
| GACCAATAGCGGCCAACACT+CGG | + | chr1_2:5410891-5410910 | None:intergenic | 55.0% | |
| GCGGCCAACACTCGGTATAT+AGG | + | chr1_2:5411370-5411389 | None:intergenic | 55.0% | |
| !! | TACCGAGTGTTGGCCGCTAT+TGG | - | chr1_2:5410886-5410905 | Msa0051300:intron | 55.0% |
| GACCAATAGCGGCCAACACT+CGG | + | chr1_2:5410891-5410910 | None:intergenic | 55.0% | |
| !! | TACCGAGTGTTGGCCGCTAT+TGG | - | chr1_2:5410886-5410905 | Msa0051300:intron | 55.0% |
| GACCAATAGCGGCCAACACT+CGG | + | chr1_2:5410891-5410910 | None:intergenic | 55.0% | |
| GTGTGTTAGCGGCCAACACT+CGG | - | chr1_2:5411362-5411381 | Msa0051300:CDS | 55.0% | |
| !! | TGTTGGTGGTTCGCGTACTC+TGG | - | chr1_2:5412211-5412230 | Msa0051300:intron | 55.0% |
| TGTGCAGCAGTGAAACGACG+CGG | + | chr1_2:5412344-5412363 | None:intergenic | 55.0% | |
| CCCCTCTTCTTAGGCTGGAC+AGG | + | chr1_2:5410444-5410463 | None:intergenic | 60.0% | |
| TGTTAGCGGCCAACACTCGG+TGG | - | chr1_2:5410689-5410708 | Msa0051300:intron | 60.0% | |
| GTTAGCGGCCAACACTCGGT+GGG | - | chr1_2:5410690-5410709 | Msa0051300:intron | 60.0% | |
| AGTCCACGCTTCAGGCCCAT+TGG | - | chr1_2:5411318-5411337 | Msa0051300:CDS | 60.0% | |
| GTCCACGCTTCAGGCCCATT+GGG | - | chr1_2:5411319-5411338 | Msa0051300:CDS | 60.0% | |
| ACGCTTCAGGCCCATTGGGT+CGG | - | chr1_2:5411323-5411342 | Msa0051300:CDS | 60.0% | |
| ACGCTTCAGCCCGACCCAAT+GGG | + | chr1_2:5411336-5411355 | None:intergenic | 60.0% | |
| ! | AGCGTGAGGGGGTGTGTTAG+CGG | - | chr1_2:5411351-5411370 | Msa0051300:CDS | 60.0% |
| ! | GGGGGTGTGTTAGCCGCTAT+TGG | + | chr1_2:5411442-5411461 | None:intergenic | 60.0% |
| AGTCCACGCTTCAGGCCCAT+TGG | - | chr1_2:5411318-5411337 | Msa0051300:CDS | 60.0% | |
| GTCCACGCTTCAGGCCCATT+GGG | - | chr1_2:5411319-5411338 | Msa0051300:CDS | 60.0% | |
| ACGCTTCAGGCCCATTGGGT+CGG | - | chr1_2:5411323-5411342 | Msa0051300:CDS | 60.0% | |
| ACGCTTCAGCCCGACCCAAT+GGG | + | chr1_2:5411336-5411355 | None:intergenic | 60.0% | |
| ! | AGCGTGAGGGGGTGTGTTAG+CGG | - | chr1_2:5411351-5411370 | Msa0051300:CDS | 60.0% |
| ! | GGGGGTGTGTTAGCCGCTAT+TGG | + | chr1_2:5411442-5411461 | None:intergenic | 60.0% |
| GGTTCGCGTACTCTGGTGAG+TGG | - | chr1_2:5412218-5412237 | Msa0051300:intron | 60.0% | |
| GTGCAGCAGTGAAACGACGC+GGG | + | chr1_2:5412343-5412362 | None:intergenic | 60.0% | |
| GGAGGGAACCGCTACAGGTG+TGG | + | chr1_2:5410373-5410392 | None:intergenic | 65.0% | |
| GACCCAATGGGCCTGAAGCG+TGG | + | chr1_2:5411324-5411343 | None:intergenic | 65.0% | |
| CGCTTCAGGCCCATTGGGTC+GGG | - | chr1_2:5411324-5411343 | Msa0051300:CDS | 65.0% | |
| CACGCTTCAGCCCGACCCAA+TGG | + | chr1_2:5411337-5411356 | None:intergenic | 65.0% | |
| TTGGGTCGGGCTGAAGCGTG+AGG | - | chr1_2:5411337-5411356 | Msa0051300:CDS | 65.0% | |
| TGGGTCGGGCTGAAGCGTGA+GGG | - | chr1_2:5411338-5411357 | Msa0051300:CDS | 65.0% | |
| GACCCAATGGGCCTGAAGCG+TGG | + | chr1_2:5411324-5411343 | None:intergenic | 65.0% | |
| CGCTTCAGGCCCATTGGGTC+GGG | - | chr1_2:5411324-5411343 | Msa0051300:CDS | 65.0% | |
| CACGCTTCAGCCCGACCCAA+TGG | + | chr1_2:5411337-5411356 | None:intergenic | 65.0% | |
| TTGGGTCGGGCTGAAGCGTG+AGG | - | chr1_2:5411337-5411356 | Msa0051300:CDS | 65.0% | |
| TGGGTCGGGCTGAAGCGTGA+GGG | - | chr1_2:5411338-5411357 | Msa0051300:CDS | 65.0% | |
| GGGTCGGGCTGAAGCGTGAG+GGG | - | chr1_2:5411339-5411358 | Msa0051300:CDS | 70.0% | |
| GGTCGGGCTGAAGCGTGAGG+GGG | - | chr1_2:5411340-5411359 | Msa0051300:CDS | 70.0% | |
| GGGTCGGGCTGAAGCGTGAG+GGG | - | chr1_2:5411339-5411358 | Msa0051300:CDS | 70.0% | |
| GGTCGGGCTGAAGCGTGAGG+GGG | - | chr1_2:5411340-5411359 | Msa0051300:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5409163 | 5412628 | 5409163 | ID=Msa0051300;Name=Msa0051300 |
| chr1_2 | mRNA | 5409163 | 5412628 | 5409163 | ID=Msa0051300-mRNA-1;Parent=Msa0051300;Name=Msa0051300-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|4|0|362 |
| chr1_2 | exon | 5412518 | 5412628 | 5412518 | ID=Msa0051300-mRNA-1:exon:1644;Parent=Msa0051300-mRNA-1 |
| chr1_2 | exon | 5411257 | 5411815 | 5411257 | ID=Msa0051300-mRNA-1:exon:1643;Parent=Msa0051300-mRNA-1 |
| chr1_2 | exon | 5409559 | 5409683 | 5409559 | ID=Msa0051300-mRNA-1:exon:1642;Parent=Msa0051300-mRNA-1 |
| chr1_2 | exon | 5409163 | 5409456 | 5409163 | ID=Msa0051300-mRNA-1:exon:1641;Parent=Msa0051300-mRNA-1 |
| chr1_2 | CDS | 5412518 | 5412628 | 5412518 | ID=Msa0051300-mRNA-1:cds;Parent=Msa0051300-mRNA-1 |
| chr1_2 | CDS | 5411257 | 5411815 | 5411257 | ID=Msa0051300-mRNA-1:cds;Parent=Msa0051300-mRNA-1 |
| chr1_2 | CDS | 5409559 | 5409683 | 5409559 | ID=Msa0051300-mRNA-1:cds;Parent=Msa0051300-mRNA-1 |
| chr1_2 | CDS | 5409163 | 5409456 | 5409163 | ID=Msa0051300-mRNA-1:cds;Parent=Msa0051300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
