Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051310 | XP_003589277.1 | 92.063 | 378 | 19 | 2 | 1 | 377 | 1 | 368 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051310 | sp|Q8RYD1|REM16_ARATH | 32.240 | 366 | 202 | 10 | 8 | 367 | 3 | 328 | 5.01e-50 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051310 | G7I576 | 92.063 | 378 | 19 | 2 | 1 | 377 | 1 | 368 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051310 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051310 | MtrunA17_Chr1g0154161 | 81.217 | 378 | 17 | 3 | 1 | 377 | 1 | 325 | 0.0 | 611 |
| Msa0051310 | MtrunA17_Chr1g0154171 | 80.163 | 368 | 60 | 3 | 11 | 376 | 4 | 360 | 0.0 | 579 |
| Msa0051310 | MtrunA17_Chr1g0154191 | 68.831 | 385 | 83 | 8 | 13 | 377 | 5 | 372 | 0.0 | 514 |
| Msa0051310 | MtrunA17_Chr1g0154211 | 58.561 | 403 | 113 | 6 | 11 | 370 | 4 | 395 | 2.05e-155 | 443 |
| Msa0051310 | MtrunA17_Chr1g0154151 | 65.861 | 331 | 82 | 8 | 44 | 369 | 19 | 323 | 1.49e-144 | 413 |
| Msa0051310 | MtrunA17_Chr1g0154131 | 59.777 | 358 | 95 | 7 | 14 | 369 | 168 | 478 | 5.41e-140 | 407 |
| Msa0051310 | MtrunA17_Chr1g0154131 | 70.482 | 166 | 43 | 1 | 6 | 165 | 2 | 167 | 5.12e-73 | 235 |
| Msa0051310 | MtrunA17_Chr1g0154111 | 57.796 | 372 | 128 | 6 | 13 | 368 | 9 | 367 | 1.55e-139 | 409 |
| Msa0051310 | MtrunA17_Chr1g0154111 | 57.727 | 220 | 72 | 5 | 44 | 243 | 368 | 586 | 4.16e-69 | 228 |
| Msa0051310 | MtrunA17_Chr1g0154101 | 50.780 | 449 | 128 | 8 | 14 | 372 | 168 | 613 | 7.24e-130 | 392 |
| Msa0051310 | MtrunA17_Chr1g0154101 | 70.930 | 172 | 38 | 3 | 1 | 165 | 1 | 167 | 8.86e-74 | 245 |
| Msa0051310 | MtrunA17_Chr1g0154101 | 38.997 | 359 | 191 | 9 | 27 | 376 | 503 | 842 | 8.25e-58 | 201 |
| Msa0051310 | MtrunA17_Chr1g0154071 | 52.033 | 369 | 160 | 7 | 4 | 364 | 131 | 490 | 3.04e-110 | 331 |
| Msa0051310 | MtrunA17_Chr1g0154071 | 79.562 | 137 | 27 | 1 | 5 | 140 | 2 | 138 | 9.78e-69 | 224 |
| Msa0051310 | MtrunA17_Chr1g0154241 | 62.548 | 259 | 51 | 4 | 13 | 230 | 5 | 258 | 2.69e-100 | 298 |
| Msa0051310 | MtrunA17_Chr1g0154251 | 44.153 | 419 | 157 | 13 | 6 | 358 | 2 | 409 | 4.93e-93 | 287 |
| Msa0051310 | MtrunA17_Chr1g0154041 | 38.187 | 364 | 193 | 10 | 27 | 377 | 252 | 596 | 7.45e-63 | 211 |
| Msa0051310 | MtrunA17_Chr1g0154041 | 34.278 | 353 | 214 | 6 | 29 | 370 | 15 | 360 | 1.61e-56 | 194 |
| Msa0051310 | MtrunA17_Chr3g0131891 | 24.638 | 345 | 187 | 10 | 28 | 358 | 17 | 302 | 8.32e-20 | 89.4 |
| Msa0051310 | MtrunA17_Chr1g0154121 | 44.000 | 100 | 45 | 2 | 289 | 377 | 2 | 101 | 8.33e-20 | 83.6 |
| Msa0051310 | MtrunA17_Chr7g0233561 | 23.988 | 346 | 193 | 9 | 30 | 358 | 19 | 311 | 1.48e-17 | 82.8 |
| Msa0051310 | MtrunA17_Chr8g0390841 | 23.810 | 357 | 207 | 16 | 23 | 365 | 32 | 337 | 6.58e-14 | 73.2 |
| Msa0051310 | MtrunA17_Chr7g0233571 | 32.353 | 102 | 68 | 1 | 23 | 123 | 3 | 104 | 4.98e-12 | 65.1 |
| Msa0051310 | MtrunA17_Chr7g0233531 | 35.443 | 79 | 51 | 0 | 45 | 123 | 2 | 80 | 3.35e-11 | 63.5 |
| Msa0051310 | MtrunA17_Chr1g0163181 | 23.625 | 309 | 190 | 10 | 41 | 348 | 17 | 280 | 4.29e-11 | 63.9 |
| Msa0051310 | MtrunA17_Chr1g0162441 | 40.506 | 79 | 47 | 0 | 41 | 119 | 19 | 97 | 7.33e-11 | 63.5 |
| Msa0051310 | MtrunA17_Chr5g0419201 | 29.371 | 143 | 94 | 2 | 30 | 165 | 17 | 159 | 9.06e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051310 | AT4G33280.1 | 32.240 | 366 | 202 | 10 | 8 | 367 | 3 | 328 | 5.09e-51 | 174 |
| Msa0051310 | AT4G33280.3 | 31.017 | 403 | 219 | 13 | 8 | 367 | 3 | 389 | 1.88e-46 | 164 |
| Msa0051310 | AT4G33280.2 | 52.555 | 137 | 63 | 2 | 8 | 143 | 3 | 138 | 9.97e-45 | 156 |
| Msa0051310 | AT3G18990.2 | 25.000 | 348 | 228 | 10 | 27 | 358 | 5 | 335 | 2.68e-20 | 91.7 |
| Msa0051310 | AT3G18990.1 | 25.000 | 348 | 228 | 10 | 27 | 358 | 5 | 335 | 2.97e-20 | 91.3 |
| Msa0051310 | AT4G34400.2 | 38.372 | 86 | 53 | 0 | 43 | 128 | 29 | 114 | 2.69e-16 | 80.1 |
| Msa0051310 | AT4G34400.1 | 38.372 | 86 | 53 | 0 | 43 | 128 | 29 | 114 | 2.69e-16 | 80.1 |
| Msa0051310 | AT5G66980.1 | 24.000 | 325 | 186 | 12 | 41 | 349 | 21 | 300 | 7.60e-14 | 72.4 |
| Msa0051310 | AT3G06220.1 | 24.731 | 186 | 111 | 7 | 30 | 210 | 11 | 172 | 2.17e-13 | 68.2 |
| Msa0051310 | AT3G06160.5 | 25.490 | 204 | 136 | 4 | 30 | 219 | 11 | 212 | 9.67e-13 | 68.9 |
| Msa0051310 | AT3G06160.4 | 25.490 | 204 | 136 | 4 | 30 | 219 | 11 | 212 | 9.67e-13 | 68.9 |
| Msa0051310 | AT3G06160.3 | 25.490 | 204 | 136 | 4 | 30 | 219 | 11 | 212 | 9.67e-13 | 68.9 |
| Msa0051310 | AT3G06160.1 | 25.490 | 204 | 136 | 4 | 30 | 219 | 26 | 227 | 1.23e-12 | 68.6 |
| Msa0051310 | AT3G06160.2 | 25.490 | 204 | 136 | 4 | 30 | 219 | 70 | 271 | 2.11e-12 | 68.2 |
| Msa0051310 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 43 | 126 | 27 | 115 | 4.17e-11 | 63.2 |
| Msa0051310 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 43 | 126 | 1 | 89 | 5.76e-11 | 63.5 |
| Msa0051310 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 43 | 126 | 27 | 115 | 6.14e-11 | 63.2 |
| Msa0051310 | AT5G60130.4 | 38.202 | 89 | 50 | 2 | 43 | 126 | 24 | 112 | 7.79e-11 | 63.2 |
| Msa0051310 | AT5G60130.1 | 38.202 | 89 | 50 | 2 | 43 | 126 | 27 | 115 | 7.93e-11 | 63.2 |
Find 73 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATGCAGGTTTATATATT+TGG | 0.094425 | 1_2:-5415676 | Msa0051310:CDS |
| CGTGATAATGGCGTCAATTT+TGG | 0.150911 | 1_2:-5415733 | Msa0051310:CDS |
| TCACCAGAATCATCTGATTT+TGG | 0.157947 | 1_2:+5416633 | None:intergenic |
| CCAGAAAATGTGACTCTTAA+AGG | 0.201467 | 1_2:-5417080 | Msa0051310:CDS |
| TTCAATAACAGGCTTCTTCT+TGG | 0.282840 | 1_2:+5416692 | None:intergenic |
| ATAGTAAAGGTTAATGAAAA+AGG | 0.307058 | 1_2:+5416551 | None:intergenic |
| TGATGCAGGTTTATATATTT+GGG | 0.316840 | 1_2:-5415675 | Msa0051310:CDS |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.318640 | 1_2:+5416658 | None:intergenic |
| ATGGCCTTTGTTCGTGATAA+TGG | 0.338775 | 1_2:-5415745 | Msa0051310:CDS |
| CTTGGGAGGAAGATATTTAC+TGG | 0.342132 | 1_2:-5419796 | Msa0051310:CDS |
| TGTGCAGCAGAGAAATGATA+TGG | 0.347411 | 1_2:+5415883 | None:intergenic |
| GAAGAGAAGGAGGACAAAAC+TGG | 0.361111 | 1_2:-5419832 | Msa0051310:CDS |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.366675 | 1_2:-5417053 | Msa0051310:CDS |
| TGAAATGGATGAATTGAAAA+TGG | 0.368925 | 1_2:+5419771 | None:intergenic |
| CCACCAAAATCAGATGATTC+TGG | 0.370898 | 1_2:-5416636 | Msa0051310:CDS |
| CAGGTTTATATATTTGGGTC+TGG | 0.392240 | 1_2:-5415670 | Msa0051310:CDS |
| GAAGGTGCTGACAATCAAAA+TGG | 0.406299 | 1_2:-5415643 | Msa0051310:CDS |
| ACGTGAACCACCGACATTGC+CGG | 0.427066 | 1_2:+5416031 | None:intergenic |
| CAATGGTGAATCACTCTTTG+AGG | 0.437853 | 1_2:-5416931 | Msa0051310:CDS |
| ACTGGGATGGAAGCAGATCT+TGG | 0.444710 | 1_2:-5419814 | Msa0051310:CDS |
| ACAGGCGTAACTTCAATAAC+AGG | 0.455079 | 1_2:+5416681 | None:intergenic |
| CCTCGCTTCTTAGTCTGGAC+AGG | 0.455288 | 1_2:+5416663 | None:intergenic |
| CGTTACTAATTATGTGATGC+AGG | 0.456839 | 1_2:-5415689 | Msa0051310:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.467557 | 1_2:+5416064 | None:intergenic |
| GGCCATCCAACCTCCACAAA+AGG | 0.468848 | 1_2:+5415762 | None:intergenic |
| GTTACGCTTCGCAATTCAAA+AGG | 0.477769 | 1_2:-5415838 | Msa0051310:CDS |
| AACTCCGTCCCATGTCCTAA+AGG | 0.478589 | 1_2:-5415799 | Msa0051310:CDS |
| TTTGTTAAAATACTTAAAGC+CGG | 0.484390 | 1_2:-5416050 | Msa0051310:CDS |
| ACTCCGTCCCATGTCCTAAA+GGG | 0.485469 | 1_2:-5415798 | Msa0051310:CDS |
| TGTTGAGTCTGCTTCCCCTC+AGG | 0.486277 | 1_2:-5416778 | Msa0051310:CDS |
| AAAAGAGGAGGTAAATGATT+CGG | 0.487480 | 1_2:+5416079 | None:intergenic |
| CTGGGATGGAAGCAGATCTT+GGG | 0.489620 | 1_2:-5419813 | Msa0051310:CDS |
| TGAGAAGCTACTACGTGATT+TGG | 0.490561 | 1_2:-5416613 | Msa0051310:CDS |
| GTTTGGGATGGAACAGCAGC+AGG | 0.494894 | 1_2:+5416729 | None:intergenic |
| GCAATTCAAAAGGCGAATGT+TGG | 0.495644 | 1_2:-5415828 | Msa0051310:CDS |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1_2:-5416948 | Msa0051310:CDS |
| CATCCCAAACAACCAGCAAA+AGG | 0.510135 | 1_2:-5416716 | Msa0051310:CDS |
| TGTCGGTGGTTCACGTACTC+TGG | 0.524951 | 1_2:-5416024 | Msa0051310:intron |
| AGATGATACTGTTTACTTCG+TGG | 0.529756 | 1_2:-5417018 | Msa0051310:CDS |
| TTTCAAATGGGAGGAAGAGA+AGG | 0.551523 | 1_2:-5419845 | None:intergenic |
| CTGTTTACTTCGTGGACAGT+TGG | 0.553049 | 1_2:-5417010 | Msa0051310:CDS |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1_2:+5416946 | None:intergenic |
| TAATTTGTAAAATATAGTAA+AGG | 0.555561 | 1_2:+5416538 | None:intergenic |
| ATATTTGGGTCTGGAAAGGA+AGG | 0.560311 | 1_2:-5415661 | Msa0051310:CDS |
| AACTGAACAAGGGGATAGCA+AGG | 0.567712 | 1_2:-5416835 | Msa0051310:CDS |
| GGATGGAACAGCAGCAGGTG+TGG | 0.569628 | 1_2:+5416734 | None:intergenic |
| ATACTTAAAGCCGGCAATGT+CGG | 0.570757 | 1_2:-5416041 | Msa0051310:CDS |
| TTATATATTTGGGTCTGGAA+AGG | 0.573582 | 1_2:-5415665 | Msa0051310:CDS |
| GTGCAGCAGAGAAATGATAT+GGG | 0.574698 | 1_2:+5415884 | None:intergenic |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_2:+5417056 | None:intergenic |
| TGAGTCTGCTTCCCCTCAGG+TGG | 0.579761 | 1_2:-5416775 | Msa0051310:CDS |
| TGATTTGGTGGCTTGTAACA+AGG | 0.579854 | 1_2:-5416598 | Msa0051310:CDS |
| AACTGACTGTTTCAAATGGG+AGG | 0.581709 | 1_2:-5419854 | None:intergenic |
| GTGACTCTTAAAGGTCCTAG+TGG | 0.582196 | 1_2:-5417071 | Msa0051310:CDS |
| GAAGCTACTACGTGATTTGG+TGG | 0.582551 | 1_2:-5416610 | Msa0051310:CDS |
| GGACATGCTCAAACTGAACA+AGG | 0.582745 | 1_2:-5416846 | Msa0051310:CDS |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 1_2:+5416067 | None:intergenic |
| AAGAGAAGGAGGACAAAACT+GGG | 0.592018 | 1_2:-5419831 | Msa0051310:CDS |
| GAAGGAGGACAAAACTGGGA+TGG | 0.593813 | 1_2:-5419827 | Msa0051310:CDS |
| TTTCCCTTTAGGACATGGGA+CGG | 0.601551 | 1_2:+5415795 | None:intergenic |
| CTTAAAGCCGGCAATGTCGG+TGG | 0.614556 | 1_2:-5416038 | Msa0051310:CDS |
| GTGACTGCATCAGCCACCTG+AGG | 0.618568 | 1_2:+5416762 | None:intergenic |
| GACATGCTCAAACTGAACAA+GGG | 0.623288 | 1_2:-5416845 | Msa0051310:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_2:-5417061 | Msa0051310:CDS |
| GGATGGAAGCAGATCTTGGG+AGG | 0.627280 | 1_2:-5419810 | Msa0051310:CDS |
| GACGCCATTATCACGAACAA+AGG | 0.630765 | 1_2:+5415741 | None:intergenic |
| ACAAGGGGATAGCAAGGCAA+AGG | 0.631522 | 1_2:-5416829 | Msa0051310:CDS |
| ACATGCTCAAACTGAACAAG+GGG | 0.631696 | 1_2:-5416844 | Msa0051310:CDS |
| CAAATGGGAGGAAGAGAAGG+AGG | 0.632169 | 1_2:-5419842 | Msa0051310:CDS |
| TGACTGCATCAGCCACCTGA+GGG | 0.639967 | 1_2:+5416763 | None:intergenic |
| GCTTGTAACAAGGAACACTC+AGG | 0.674573 | 1_2:-5416588 | Msa0051310:CDS |
| GACTGCATCAGCCACCTGAG+GGG | 0.684545 | 1_2:+5416764 | None:intergenic |
| CCTGTCCAGACTAAGAAGCG+AGG | 0.710957 | 1_2:-5416663 | Msa0051310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATAAAAAATTGAAA+AGG | + | chr1_2:5415849-5415868 | None:intergenic | 10.0% |
| !!! | CACTTTTATTTAAATAAATT+GGG | - | chr1_2:5417895-5417914 | Msa0051310:intron | 10.0% |
| !!! | ACTTTTATTTAAATAAATTG+GGG | - | chr1_2:5417896-5417915 | Msa0051310:intron | 10.0% |
| !!! | AAAATTTATATTTTAATTGC+AGG | - | chr1_2:5418313-5418332 | Msa0051310:intron | 10.0% |
| !!! | TAATTTGTAAAATATAGTAA+AGG | + | chr1_2:5418922-5418941 | None:intergenic | 10.0% |
| !!! | ACTATATTTTACAAATTATT+TGG | - | chr1_2:5418924-5418943 | Msa0051310:intron | 10.0% |
| !!! | TTAAGTATTTTAACAAAATA+TGG | + | chr1_2:5419404-5419423 | None:intergenic | 10.0% |
| !!! | TAAGTTTTTTCATTTCATTT+TGG | + | chr1_2:5416108-5416127 | None:intergenic | 15.0% |
| !! | AAATGAAATGAAAAAACTTA+AGG | - | chr1_2:5416108-5416127 | Msa0051310:intron | 15.0% |
| !! | AATGAAATGAAAAAACTTAA+GGG | - | chr1_2:5416109-5416128 | Msa0051310:intron | 15.0% |
| !!! | GCACTTTTATTTAAATAAAT+TGG | - | chr1_2:5417894-5417913 | Msa0051310:intron | 15.0% |
| !!! | TAAGCAAAAATCAATTTTTT+AGG | - | chr1_2:5418111-5418130 | Msa0051310:intron | 15.0% |
| !!! | TAAGCAAAAATTAACTTTTT+AGG | + | chr1_2:5418200-5418219 | None:intergenic | 15.0% |
| !!! | ATCTGTAGTTTTAAGAAATT+GGG | + | chr1_2:5415712-5415731 | None:intergenic | 20.0% |
| !!! | AATCTGTAGTTTTAAGAAAT+TGG | + | chr1_2:5415713-5415732 | None:intergenic | 20.0% |
| !!! | AATATGAATACTTTAGAAGA+TGG | + | chr1_2:5415772-5415791 | None:intergenic | 20.0% |
| !!! | TCTTCTAAAGTATTCATATT+TGG | - | chr1_2:5415772-5415791 | Msa0051310:CDS | 20.0% |
| !!! | CTTCTAAAGTATTCATATTT+GGG | - | chr1_2:5415773-5415792 | Msa0051310:CDS | 20.0% |
| !! | AAACAATGAAAAATAGTACA+TGG | + | chr1_2:5415815-5415834 | None:intergenic | 20.0% |
| !! | AGATAAAAAATTGAAAAGGT+GGG | + | chr1_2:5415845-5415864 | None:intergenic | 20.0% |
| !! | AAGATAAAAAATTGAAAAGG+TGG | + | chr1_2:5415846-5415865 | None:intergenic | 20.0% |
| !!! | ATATGCTTGTTTTTAAATCA+TGG | - | chr1_2:5415972-5415991 | Msa0051310:intron | 20.0% |
| !! | TAAAGAAAAGGAATTGAATA+AGG | - | chr1_2:5416042-5416061 | Msa0051310:CDS | 20.0% |
| !!! | CTTTTTTTCTATCATATGTT+TGG | - | chr1_2:5416602-5416621 | Msa0051310:CDS | 20.0% |
| !!! | ATAAAACAGAAACGTATTTT+CGG | - | chr1_2:5416806-5416825 | Msa0051310:CDS | 20.0% |
| !! | AATAAAACTAGAACAAATCT+AGG | + | chr1_2:5416833-5416852 | None:intergenic | 20.0% |
| !! | CATTCATTAAATGATGTATT+TGG | - | chr1_2:5418136-5418155 | Msa0051310:intron | 20.0% |
| !! | CATTCATTAAATGATGTATT+TGG | + | chr1_2:5418136-5418155 | None:intergenic | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5418344-5418363 | None:intergenic | 20.0% |
| !! | ATAGTAAAGGTTAATGAAAA+AGG | + | chr1_2:5418909-5418928 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1_2:5419396-5419415 | None:intergenic | 20.0% |
| !! | TTTGTTAAAATACTTAAAGC+CGG | - | chr1_2:5419407-5419426 | Msa0051310:intron | 20.0% |
| ! | TGAAATGGATGAATTGAAAA+TGG | + | chr1_2:5415689-5415708 | None:intergenic | 25.0% |
| !!! | TTTTAAGAAATTGGGTGAAA+TGG | + | chr1_2:5415704-5415723 | None:intergenic | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTTT+TGG | - | chr1_2:5415906-5415925 | Msa0051310:intron | 25.0% |
| !!! | TTGTTTTTAAATCATGGCTT+AGG | - | chr1_2:5415978-5415997 | Msa0051310:intron | 25.0% |
| !!! | TTCTGAGTTGATTAAAGAAA+AGG | - | chr1_2:5416030-5416049 | Msa0051310:CDS | 25.0% |
| !!! | GTTATTTTTAGGTTTCACTT+TGG | + | chr1_2:5416167-5416186 | None:intergenic | 25.0% |
| ! | TGAAACCTAAAAATAACTGA+AGG | - | chr1_2:5416170-5416189 | Msa0051310:intron | 25.0% |
| ! | GAAACCTAAAAATAACTGAA+GGG | - | chr1_2:5416171-5416190 | Msa0051310:intron | 25.0% |
| ! | TGGGAAAAATCTTTAAATCA+AGG | + | chr1_2:5416449-5416468 | None:intergenic | 25.0% |
| ! | TTCTTAAAAGTTGCATTCTT+TGG | + | chr1_2:5416493-5416512 | None:intergenic | 25.0% |
| !!! | AATGCAACTTTTAAGAACTT+AGG | - | chr1_2:5416496-5416515 | Msa0051310:intron | 25.0% |
| !!! | ATGCAACTTTTAAGAACTTA+GGG | - | chr1_2:5416497-5416516 | Msa0051310:intron | 25.0% |
| !! | TTCCAATTTCTTCAATTTTG+AGG | + | chr1_2:5416651-5416670 | None:intergenic | 25.0% |
| ! | AATTGAAGAAATTGGAATTC+TGG | - | chr1_2:5416654-5416673 | Msa0051310:CDS | 25.0% |
| ! | AAAAAAACAGAGTCCAAAAT+CGG | + | chr1_2:5416718-5416737 | None:intergenic | 25.0% |
| !! | TTATTTTCTGCTGTCAAAAT+CGG | + | chr1_2:5416790-5416809 | None:intergenic | 25.0% |
| !! | TAAAACAGAAACGTATTTTC+GGG | - | chr1_2:5416807-5416826 | Msa0051310:CDS | 25.0% |
| !!! | GATTTGTTCTAGTTTTATTG+AGG | - | chr1_2:5416834-5416853 | Msa0051310:CDS | 25.0% |
| ! | TAACGTTACTCATTATATAG+TGG | - | chr1_2:5417113-5417132 | Msa0051310:CDS | 25.0% |
| !! | TTACTCATTATATAGTGGAA+CGG | - | chr1_2:5417118-5417137 | Msa0051310:CDS | 25.0% |
| !!! | TGTTTCATACACTTTGATTT+TGG | - | chr1_2:5417261-5417280 | Msa0051310:intron | 25.0% |
| ! | ATTGTATGATTGTGTTTGTT+GGG | + | chr1_2:5417399-5417418 | None:intergenic | 25.0% |
| !!! | TTATCTTGTTGCTTTGATTA+AGG | - | chr1_2:5417723-5417742 | Msa0051310:intron | 25.0% |
| !!! | TTAAGGTTTTGATTTACACT+TGG | - | chr1_2:5417740-5417759 | Msa0051310:intron | 25.0% |
| ! | ATTTAAATAAATTGGGGAAG+AGG | - | chr1_2:5417902-5417921 | Msa0051310:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr1_2:5418210-5418229 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr1_2:5418210-5418229 | Msa0051310:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_2:5418542-5418561 | Msa0051310:intron | 25.0% |
| ! | AGTTTAATAGGACACATTAA+GGG | + | chr1_2:5419028-5419047 | None:intergenic | 25.0% |
| ! | TGTTTATGTTGAAGATACTA+TGG | + | chr1_2:5419080-5419099 | None:intergenic | 25.0% |
| ! | TAGAATGAAATCAAATCACA+AGG | + | chr1_2:5419157-5419176 | None:intergenic | 25.0% |
| !! | TAAGCTTTGGCATAAATATA+AGG | + | chr1_2:5419265-5419284 | None:intergenic | 25.0% |
| !! | AAAATAATTCACTCCTTTTG+TGG | - | chr1_2:5419682-5419701 | Msa0051310:intron | 25.0% |
| ! | TGATGCAGGTTTATATATTT+GGG | - | chr1_2:5419782-5419801 | Msa0051310:CDS | 25.0% |
| ! | TGAATACTTTAGAAGATGGA+AGG | + | chr1_2:5415768-5415787 | None:intergenic | 30.0% |
| ! | ACAAGGGTAAATTACACTTT+TGG | + | chr1_2:5416197-5416216 | None:intergenic | 30.0% |
| !! | TTTTAAGTCACACTCAACAA+GGG | + | chr1_2:5416213-5416232 | None:intergenic | 30.0% |
| !! | ATTTTAAGTCACACTCAACA+AGG | + | chr1_2:5416214-5416233 | None:intergenic | 30.0% |
| GAGGAAAGAATTATGAAAGA+GGG | - | chr1_2:5416255-5416274 | Msa0051310:intron | 30.0% | |
| ! | AGAATTATGAAAGAGGGTTT+TGG | - | chr1_2:5416261-5416280 | Msa0051310:intron | 30.0% |
| !!! | AATTTTGATTCTGTCTCATG+TGG | - | chr1_2:5416349-5416368 | Msa0051310:intron | 30.0% |
| ATCATATCCTATACACCAAA+CGG | + | chr1_2:5416524-5416543 | None:intergenic | 30.0% | |
| TGCCTCAAAATTGAAGAAAT+TGG | - | chr1_2:5416646-5416665 | Msa0051310:CDS | 30.0% | |
| !!! | ACTCTGTTTTTTTTGTCTGT+TGG | - | chr1_2:5416725-5416744 | Msa0051310:CDS | 30.0% |
| !! | TCTGTTGGTTCTGTAAAAAT+CGG | - | chr1_2:5416740-5416759 | Msa0051310:CDS | 30.0% |
| TTGTATAGAGTTTGTCTCTT+TGG | - | chr1_2:5416953-5416972 | Msa0051310:CDS | 30.0% | |
| CGTTACAAACAGATTTCAAT+GGG | + | chr1_2:5417098-5417117 | None:intergenic | 30.0% | |
| ACGTTACAAACAGATTTCAA+TGG | + | chr1_2:5417099-5417118 | None:intergenic | 30.0% | |
| ! | TTGTATGATTGTGTTTGTTG+GGG | + | chr1_2:5417398-5417417 | None:intergenic | 30.0% |
| GATTGTATGATTGTGTTTGT+TGG | + | chr1_2:5417400-5417419 | None:intergenic | 30.0% | |
| !! | AAGCTCTAAATGTCTATAAC+GGG | + | chr1_2:5417426-5417445 | None:intergenic | 30.0% |
| !! | CAAGCTCTAAATGTCTATAA+CGG | + | chr1_2:5417427-5417446 | None:intergenic | 30.0% |
| ! | TTATAGACATTTAGAGCTTG+AGG | - | chr1_2:5417427-5417446 | Msa0051310:intron | 30.0% |
| ! | TATAGACATTTAGAGCTTGA+GGG | - | chr1_2:5417428-5417447 | Msa0051310:intron | 30.0% |
| ! | ATCTTTGAGTTTCTTGTTCA+TGG | - | chr1_2:5417507-5417526 | Msa0051310:intron | 30.0% |
| ! | TCTTTGAGTTTCTTGTTCAT+GGG | - | chr1_2:5417508-5417527 | Msa0051310:intron | 30.0% |
| TTGGGAAATGAGTAGAAATT+AGG | - | chr1_2:5417537-5417556 | Msa0051310:intron | 30.0% | |
| ! | AGTAGAAATTAGGTTGTTCT+TGG | - | chr1_2:5417547-5417566 | Msa0051310:intron | 30.0% |
| !! | GAAACTCATTGATAGTGAAT+TGG | - | chr1_2:5417619-5417638 | Msa0051310:intron | 30.0% |
| TACAATTTGATTACCCAGTT+CGG | + | chr1_2:5417680-5417699 | None:intergenic | 30.0% | |
| TATCGGGGACAAATTTAAAA+TGG | + | chr1_2:5417960-5417979 | None:intergenic | 30.0% | |
| TACAGAGTTCAAATCTTATC+GGG | + | chr1_2:5417976-5417995 | None:intergenic | 30.0% | |
| GTACAGAGTTCAAATCTTAT+CGG | + | chr1_2:5417977-5417996 | None:intergenic | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_2:5418509-5418528 | Msa0051310:intron | 30.0% | |
| ! | TGGAAATAGTTTTTGTGAGA+AGG | - | chr1_2:5418562-5418581 | Msa0051310:intron | 30.0% |
| !!! | AAGGCAAGTTCTTATTTTGT+CGG | - | chr1_2:5418581-5418600 | Msa0051310:intron | 30.0% |
| !!! | TCTTATTTTGTCGGAAAATG+CGG | - | chr1_2:5418590-5418609 | Msa0051310:intron | 30.0% |
| GAGTTTAATAGGACACATTA+AGG | + | chr1_2:5419029-5419048 | None:intergenic | 30.0% | |
| AATGAAATCAAATCACAAGG+AGG | + | chr1_2:5419154-5419173 | None:intergenic | 30.0% | |
| TTACGCAAAATACTAAGCTT+TGG | + | chr1_2:5419278-5419297 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+CGG | + | chr1_2:5419381-5419400 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr1_2:5419393-5419412 | None:intergenic | 30.0% | |
| AAGTTACTTAAAGATAAGCG+TGG | + | chr1_2:5419476-5419495 | None:intergenic | 30.0% | |
| !!! | GTAACTTCTATTTTGAAGTC+AGG | + | chr1_2:5419604-5419623 | None:intergenic | 30.0% |
| !!! | TTATTTTCCCTTTAGGACAT+GGG | + | chr1_2:5419669-5419688 | None:intergenic | 30.0% |
| !!! | ATTATTTTCCCTTTAGGACA+TGG | + | chr1_2:5419670-5419689 | None:intergenic | 30.0% |
| ! | GAGTGAATTATTTTCCCTTT+AGG | + | chr1_2:5419676-5419695 | None:intergenic | 30.0% |
| GTGATGCAGGTTTATATATT+TGG | - | chr1_2:5419781-5419800 | Msa0051310:CDS | 30.0% | |
| TTATATATTTGGGTCTGGAA+AGG | - | chr1_2:5419792-5419811 | Msa0051310:CDS | 30.0% | |
| AAATCATGGCTTAGGAATTG+TGG | - | chr1_2:5415986-5416005 | Msa0051310:intron | 35.0% | |
| TGTCCAACCTTCATAACTTA+AGG | - | chr1_2:5416080-5416099 | Msa0051310:CDS | 35.0% | |
| GTCCAACCTTCATAACTTAA+GGG | - | chr1_2:5416081-5416100 | Msa0051310:CDS | 35.0% | |
| TTTGGTCCCTTAAGTTATGA+AGG | + | chr1_2:5416090-5416109 | None:intergenic | 35.0% | |
| !!! | TTGGCCCTTCAGTTATTTTT+AGG | + | chr1_2:5416178-5416197 | None:intergenic | 35.0% |
| GGAGGAAAGAATTATGAAAG+AGG | - | chr1_2:5416254-5416273 | Msa0051310:intron | 35.0% | |
| TCATATCCTATACACCAAAC+GGG | + | chr1_2:5416523-5416542 | None:intergenic | 35.0% | |
| GACATGATAGAATAGAGAGT+TGG | - | chr1_2:5416547-5416566 | Msa0051310:CDS | 35.0% | |
| GAATAAGATATGACAGTGAC+AGG | - | chr1_2:5416574-5416593 | Msa0051310:CDS | 35.0% | |
| GAATTCTGGTAGCAGAAAAT+CGG | - | chr1_2:5416668-5416687 | Msa0051310:CDS | 35.0% | |
| GCTGAAACAAAGGTTTAGAA+AGG | - | chr1_2:5416912-5416931 | Msa0051310:CDS | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | - | chr1_2:5416928-5416947 | Msa0051310:CDS | 35.0% | |
| GAAAGGCAACAACAAAACTA+GGG | - | chr1_2:5416929-5416948 | Msa0051310:CDS | 35.0% | |
| !! | GAACAAACACTAGGTTTTGA+GGG | - | chr1_2:5416975-5416994 | Msa0051310:CDS | 35.0% |
| AATCCTAATAGTGTTTCCCA+AGG | + | chr1_2:5417009-5417028 | None:intergenic | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | - | chr1_2:5417017-5417036 | Msa0051310:CDS | 35.0% | |
| ! | TCATTATATAGTGGAACGGA+GGG | - | chr1_2:5417122-5417141 | Msa0051310:CDS | 35.0% |
| !! | AAGAATTTGTTGACCCAGTT+CGG | + | chr1_2:5417180-5417199 | None:intergenic | 35.0% |
| !!! | TCGCTGTTGTTTTCTACTTT+TGG | - | chr1_2:5417224-5417243 | Msa0051310:intron | 35.0% |
| ! | TCCACACATCAAGTTGTTAT+TGG | - | chr1_2:5417303-5417322 | Msa0051310:intron | 35.0% |
| ACCAATAACAACTTGATGTG+TGG | + | chr1_2:5417307-5417326 | None:intergenic | 35.0% | |
| !! | TCTAAATGTCTATAACGGGT+CGG | + | chr1_2:5417422-5417441 | None:intergenic | 35.0% |
| CAACAATGACCTATGTTTGA+GGG | + | chr1_2:5417655-5417674 | None:intergenic | 35.0% | |
| CTCAAACATAGGTCATTGTT+GGG | - | chr1_2:5417654-5417673 | Msa0051310:intron | 35.0% | |
| CAACAAGATAAAGAGAGTAG+AGG | + | chr1_2:5417714-5417733 | None:intergenic | 35.0% | |
| ! | AGATATGTTGTTGTTGCTTG+AGG | - | chr1_2:5417774-5417793 | Msa0051310:intron | 35.0% |
| TGAATTCAGACTCAAATCTG+TGG | + | chr1_2:5417833-5417852 | None:intergenic | 35.0% | |
| GATTTACTACTTGCAGAACA+AGG | + | chr1_2:5417872-5417891 | None:intergenic | 35.0% | |
| ACAGAGTTCAAATCTTATCG+GGG | + | chr1_2:5417975-5417994 | None:intergenic | 35.0% | |
| GATTTGAACTCTGTACATTG+AGG | - | chr1_2:5417981-5418000 | Msa0051310:intron | 35.0% | |
| !! | CCTTTAAGAGTCACATTTTC+TGG | + | chr1_2:5418380-5418399 | None:intergenic | 35.0% |
| CCAGAAAATGTGACTCTTAA+AGG | - | chr1_2:5418377-5418396 | Msa0051310:intron | 35.0% | |
| AGATGATACTGTTTACTTCG+TGG | - | chr1_2:5418439-5418458 | Msa0051310:intron | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_2:5418514-5418533 | None:intergenic | 35.0% | |
| TTCAATAACAGGCTTCTTCT+TGG | + | chr1_2:5418768-5418787 | None:intergenic | 35.0% | |
| ! | TCACCAGAATCATCTGATTT+TGG | + | chr1_2:5418827-5418846 | None:intergenic | 35.0% |
| !! | AAAATACAGAGAGTGCTTGT+TGG | + | chr1_2:5418998-5419017 | None:intergenic | 35.0% |
| AATAGGACACATTAAGGGAA+CGG | + | chr1_2:5419023-5419042 | None:intergenic | 35.0% | |
| ACTGAGAGAGAGAGTTTAAT+AGG | + | chr1_2:5419040-5419059 | None:intergenic | 35.0% | |
| ! | CTTTTCTTCCAACATTCACA+AGG | + | chr1_2:5419121-5419140 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1_2:5419217-5419236 | None:intergenic | 35.0% |
| ! | TAGACAAGTATCAGTTTGCT+AGG | + | chr1_2:5419218-5419237 | None:intergenic | 35.0% |
| TAGCAAACTGATACTTGTCT+AGG | - | chr1_2:5419217-5419236 | Msa0051310:intron | 35.0% | |
| ATCTGCTTGAAAAACTGATC+TGG | - | chr1_2:5419510-5419529 | Msa0051310:intron | 35.0% | |
| ! | ATAATTCACTCCTTTTGTGG+AGG | - | chr1_2:5419685-5419704 | Msa0051310:intron | 35.0% |
| CGTTACTAATTATGTGATGC+AGG | - | chr1_2:5419768-5419787 | Msa0051310:CDS | 35.0% | |
| CAGGTTTATATATTTGGGTC+TGG | - | chr1_2:5419787-5419806 | Msa0051310:CDS | 35.0% | |
| AAGAGAAGGAGGACAAAACT+GGG | - | chr1_2:5415626-5415645 | Msa0051310:CDS | 40.0% | |
| CTTGGGAGGAAGATATTTAC+TGG | - | chr1_2:5415661-5415680 | Msa0051310:CDS | 40.0% | |
| GTCCCTTAAGTTATGAAGGT+TGG | + | chr1_2:5416086-5416105 | None:intergenic | 40.0% | |
| TCTCACCATGTTTCAAGAGA+AGG | - | chr1_2:5416233-5416252 | Msa0051310:intron | 40.0% | |
| TTCCTCCTTCTCTTGAAACA+TGG | + | chr1_2:5416241-5416260 | None:intergenic | 40.0% | |
| TTTGATTCTGTCTCATGTGG+AGG | - | chr1_2:5416352-5416371 | Msa0051310:intron | 40.0% | |
| TATAGCACAAAACTGACAGC+TGG | + | chr1_2:5416385-5416404 | None:intergenic | 40.0% | |
| CCAAGAGATTACACAAGAGT+GGG | + | chr1_2:5416468-5416487 | None:intergenic | 40.0% | |
| TCCAAGAGATTACACAAGAG+TGG | + | chr1_2:5416469-5416488 | None:intergenic | 40.0% | |
| !! | GTTGGTTCTGTAAAAATCGG+TGG | - | chr1_2:5416743-5416762 | Msa0051310:CDS | 40.0% |
| AGTGTAAACCGAGAGATAGA+GGG | - | chr1_2:5416888-5416907 | Msa0051310:CDS | 40.0% | |
| !! | GTCTCTTTGGAACAAACACT+AGG | - | chr1_2:5416966-5416985 | Msa0051310:CDS | 40.0% |
| ! | GGAACAAACACTAGGTTTTG+AGG | - | chr1_2:5416974-5416993 | Msa0051310:CDS | 40.0% |
| !! | TTTTGAGGGTTGATTCACCT+TGG | - | chr1_2:5416989-5417008 | Msa0051310:CDS | 40.0% |
| ! | TTTGAGGGTTGATTCACCTT+GGG | - | chr1_2:5416990-5417009 | Msa0051310:CDS | 40.0% |
| TCACCTTGGGAAACACTATT+AGG | - | chr1_2:5417003-5417022 | Msa0051310:CDS | 40.0% | |
| ! | CTCATTATATAGTGGAACGG+AGG | - | chr1_2:5417121-5417140 | Msa0051310:CDS | 40.0% |
| GAAAACAACAGCGAGAGAAA+AGG | + | chr1_2:5417218-5417237 | None:intergenic | 40.0% | |
| ! | ATGATTGTGTTTGTTGGGGT+AGG | + | chr1_2:5417394-5417413 | None:intergenic | 40.0% |
| ! | ATTTAGAGCTTGAGGGTCTT+TGG | - | chr1_2:5417435-5417454 | Msa0051310:intron | 40.0% |
| ! | TTTAGAGCTTGAGGGTCTTT+GGG | - | chr1_2:5417436-5417455 | Msa0051310:intron | 40.0% |
| ! | CAAAGATTTTCACTCACGTG+AGG | + | chr1_2:5417494-5417513 | None:intergenic | 40.0% |
| TCTTGTTCATGGGAAGAGAT+TGG | - | chr1_2:5417518-5417537 | Msa0051310:intron | 40.0% | |
| CTTGTTCATGGGAAGAGATT+GGG | - | chr1_2:5417519-5417538 | Msa0051310:intron | 40.0% | |
| CCAACAATGACCTATGTTTG+AGG | + | chr1_2:5417656-5417675 | None:intergenic | 40.0% | |
| CCTCAAACATAGGTCATTGT+TGG | - | chr1_2:5417653-5417672 | Msa0051310:intron | 40.0% | |
| ! | TGTTGTTGCTTGAGGCTATT+TGG | - | chr1_2:5417782-5417801 | Msa0051310:intron | 40.0% |
| GCTTGAGGCTATTTGGTTAT+TGG | - | chr1_2:5417789-5417808 | Msa0051310:intron | 40.0% | |
| ATCTGTGGAGCAAGTATCAA+TGG | + | chr1_2:5417818-5417837 | None:intergenic | 40.0% | |
| ! | GCTAGCTTAATGTAAGAGCT+TGG | + | chr1_2:5418015-5418034 | None:intergenic | 40.0% |
| !! | CATCGATTTGCATACACTTG+AGG | + | chr1_2:5418039-5418058 | None:intergenic | 40.0% |
| TGTAAATCATGTACTCCCTC+CGG | - | chr1_2:5418079-5418098 | Msa0051310:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr1_2:5418214-5418233 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr1_2:5418213-5418232 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1_2:5418213-5418232 | Msa0051310:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1_2:5418214-5418233 | Msa0051310:intron | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_2:5418404-5418423 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_2:5418404-5418423 | Msa0051310:intron | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_2:5418526-5418545 | Msa0051310:intron | 40.0% | |
| GACATGCTCAAACTGAACAA+GGG | - | chr1_2:5418612-5418631 | Msa0051310:intron | 40.0% | |
| ACATGCTCAAACTGAACAAG+GGG | - | chr1_2:5418613-5418632 | Msa0051310:intron | 40.0% | |
| !! | AACACTTCTGCTTTTAACGC+TGG | - | chr1_2:5418656-5418675 | Msa0051310:intron | 40.0% |
| ACAGGCGTAACTTCAATAAC+AGG | + | chr1_2:5418779-5418798 | None:intergenic | 40.0% | |
| ! | CCAGAATCATCTGATTTTGG+TGG | + | chr1_2:5418824-5418843 | None:intergenic | 40.0% |
| CCACCAAAATCAGATGATTC+TGG | - | chr1_2:5418821-5418840 | Msa0051310:intron | 40.0% | |
| TGAGAAGCTACTACGTGATT+TGG | - | chr1_2:5418844-5418863 | Msa0051310:intron | 40.0% | |
| !! | TGATTTGGTGGCTTGTAACA+AGG | - | chr1_2:5418859-5418878 | Msa0051310:intron | 40.0% |
| TGGCAAGTTAGTTAGAGAGA+GGG | + | chr1_2:5418978-5418997 | None:intergenic | 40.0% | |
| TTGGCAAGTTAGTTAGAGAG+AGG | + | chr1_2:5418979-5418998 | None:intergenic | 40.0% | |
| GTTGAAGATACTATGGTCAC+AGG | + | chr1_2:5419073-5419092 | None:intergenic | 40.0% | |
| ! | GTTTTCCTCCTTGTGAATGT+TGG | - | chr1_2:5419110-5419129 | Msa0051310:intron | 40.0% |
| TTCTTCCAACATTCACAAGG+AGG | + | chr1_2:5419118-5419137 | None:intergenic | 40.0% | |
| AACTGTTCAATTCCTCACAG+AGG | - | chr1_2:5419310-5419329 | Msa0051310:intron | 40.0% | |
| TTCCTTCCTGATTCTATCCA+GGG | + | chr1_2:5419342-5419361 | None:intergenic | 40.0% | |
| ATACTTAAAGCCGGCAATGT+CGG | - | chr1_2:5419416-5419435 | Msa0051310:intron | 40.0% | |
| GCTTGAAAAACTGATCTGGT+TGG | - | chr1_2:5419514-5419533 | Msa0051310:intron | 40.0% | |
| GTGCAGCAGAGAAATGATAT+GGG | + | chr1_2:5419576-5419595 | None:intergenic | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | + | chr1_2:5419577-5419596 | None:intergenic | 40.0% | |
| GTTACGCTTCGCAATTCAAA+AGG | - | chr1_2:5419619-5419638 | Msa0051310:intron | 40.0% | |
| GCAATTCAAAAGGCGAATGT+TGG | - | chr1_2:5419629-5419648 | Msa0051310:intron | 40.0% | |
| ATGGCCTTTGTTCGTGATAA+TGG | - | chr1_2:5419712-5419731 | Msa0051310:intron | 40.0% | |
| !!! | CGTGATAATGGCGTCAATTT+TGG | - | chr1_2:5419724-5419743 | Msa0051310:intron | 40.0% |
| ATATTTGGGTCTGGAAAGGA+AGG | - | chr1_2:5419796-5419815 | Msa0051310:CDS | 40.0% | |
| !! | GAAGGTGCTGACAATCAAAA+TGG | - | chr1_2:5419814-5419833 | Msa0051310:CDS | 40.0% |
| GAAGAGAAGGAGGACAAAAC+TGG | - | chr1_2:5415625-5415644 | Msa0051310:CDS | 45.0% | |
| TGGCTTAGGAATTGTGGTGA+TGG | - | chr1_2:5415992-5416011 | Msa0051310:intron | 45.0% | |
| CACCATGTTTCAAGAGAAGG+AGG | - | chr1_2:5416236-5416255 | Msa0051310:intron | 45.0% | |
| GCATGTGAAGTTTGTGTGCT+AGG | - | chr1_2:5416302-5416321 | Msa0051310:intron | 45.0% | |
| !!! | GGCGCATGGTTTGTGTTTTT+TGG | - | chr1_2:5416323-5416342 | Msa0051310:intron | 45.0% |
| TACGCGTCCAATCATATGCT+AGG | - | chr1_2:5416403-5416422 | Msa0051310:intron | 45.0% | |
| ACACGTGCCTAGCATATGAT+TGG | + | chr1_2:5416413-5416432 | None:intergenic | 45.0% | |
| CCCACTCTTGTGTAATCTCT+TGG | - | chr1_2:5416465-5416484 | Msa0051310:intron | 45.0% | |
| TTAAGAACTTAGGGCCCGTT+TGG | - | chr1_2:5416506-5416525 | Msa0051310:intron | 45.0% | |
| TTCTGGTAGCAGAAAATCGG+TGG | - | chr1_2:5416671-5416690 | Msa0051310:CDS | 45.0% | |
| GTAAAAATCGGTGGCCGATT+TGG | - | chr1_2:5416752-5416771 | Msa0051310:CDS | 45.0% | |
| CAGTGTAAACCGAGAGATAG+AGG | - | chr1_2:5416887-5416906 | Msa0051310:CDS | 45.0% | |
| GTGTAAACCGAGAGATAGAG+GGG | - | chr1_2:5416889-5416908 | Msa0051310:CDS | 45.0% | |
| TGTAAACCGAGAGATAGAGG+GGG | - | chr1_2:5416890-5416909 | Msa0051310:CDS | 45.0% | |
| AGTCTCTTGGTTACGAGAAG+AGG | - | chr1_2:5417030-5417049 | Msa0051310:CDS | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | - | chr1_2:5417052-5417071 | Msa0051310:CDS | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | - | chr1_2:5417055-5417074 | Msa0051310:CDS | 45.0% | |
| GGATTTGGGTAGAATTAGGC+GGG | - | chr1_2:5417056-5417075 | Msa0051310:CDS | 45.0% | |
| TCCAAATTGACCTAGTCTGG+GGG | + | chr1_2:5417157-5417176 | None:intergenic | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | + | chr1_2:5417158-5417177 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | + | chr1_2:5417159-5417178 | None:intergenic | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | - | chr1_2:5417163-5417182 | Msa0051310:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | - | chr1_2:5417164-5417183 | Msa0051310:intron | 45.0% | |
| CAACTTGATGTGTGGAGCAA+GGG | + | chr1_2:5417299-5417318 | None:intergenic | 45.0% | |
| ACAACTTGATGTGTGGAGCA+AGG | + | chr1_2:5417300-5417319 | None:intergenic | 45.0% | |
| TTTGGGTGAGACTCTTAGGT+TGG | - | chr1_2:5417453-5417472 | Msa0051310:intron | 45.0% | |
| TTGGGTGAGACTCTTAGGTT+GGG | - | chr1_2:5417454-5417473 | Msa0051310:intron | 45.0% | |
| ATCATCTCTAGTACTCCCTC+CGG | + | chr1_2:5418232-5418251 | None:intergenic | 45.0% | |
| GTGACTCTTAAAGGTCCTAG+TGG | - | chr1_2:5418386-5418405 | Msa0051310:intron | 45.0% | |
| CTGTTTACTTCGTGGACAGT+TGG | - | chr1_2:5418447-5418466 | Msa0051310:intron | 45.0% | |
| GGACATGCTCAAACTGAACA+AGG | - | chr1_2:5418611-5418630 | Msa0051310:intron | 45.0% | |
| AACTGAACAAGGGGATAGCA+AGG | - | chr1_2:5418622-5418641 | Msa0051310:intron | 45.0% | |
| !! | CTTTTGCTGGTTGTTTGGGA+TGG | + | chr1_2:5418743-5418762 | None:intergenic | 45.0% |
| CATCCCAAACAACCAGCAAA+AGG | - | chr1_2:5418741-5418760 | Msa0051310:intron | 45.0% | |
| !! | GGTCCTTTTGCTGGTTGTTT+GGG | + | chr1_2:5418747-5418766 | None:intergenic | 45.0% |
| !! | TGGTCCTTTTGCTGGTTGTT+TGG | + | chr1_2:5418748-5418767 | None:intergenic | 45.0% |
| ! | CTTCTTCTTGGTCCTTTTGC+TGG | + | chr1_2:5418756-5418775 | None:intergenic | 45.0% |
| ! | GAAGCTACTACGTGATTTGG+TGG | - | chr1_2:5418847-5418866 | Msa0051310:intron | 45.0% |
| GCTTGTAACAAGGAACACTC+AGG | - | chr1_2:5418869-5418888 | Msa0051310:intron | 45.0% | |
| CTTCCTTCCTGATTCTATCC+AGG | + | chr1_2:5419343-5419362 | None:intergenic | 45.0% | |
| !! | TTTCCCTTTAGGACATGGGA+CGG | + | chr1_2:5419665-5419684 | None:intergenic | 45.0% |
| ! | TTCACTCCTTTTGTGGAGGT+TGG | - | chr1_2:5419689-5419708 | Msa0051310:intron | 45.0% |
| GACGCCATTATCACGAACAA+AGG | + | chr1_2:5419719-5419738 | None:intergenic | 45.0% | |
| GAAGGAGGACAAAACTGGGA+TGG | - | chr1_2:5415630-5415649 | Msa0051310:CDS | 50.0% | |
| ACTGGGATGGAAGCAGATCT+TGG | - | chr1_2:5415643-5415662 | Msa0051310:CDS | 50.0% | |
| CTGGGATGGAAGCAGATCTT+GGG | - | chr1_2:5415644-5415663 | Msa0051310:CDS | 50.0% | |
| AAACTTCACATGCCTAGCGC+AGG | + | chr1_2:5416295-5416314 | None:intergenic | 50.0% | |
| AAGTTTGTGTGCTAGGCGCA+TGG | - | chr1_2:5416309-5416328 | Msa0051310:intron | 50.0% | |
| CATATGCTAGGCACGTGTCA+CGG | - | chr1_2:5416415-5416434 | Msa0051310:intron | 50.0% | |
| ATATGCTAGGCACGTGTCAC+GGG | - | chr1_2:5416416-5416435 | Msa0051310:intron | 50.0% | |
| !! | TTAGGGCCCGTTTGGTGTAT+AGG | - | chr1_2:5416514-5416533 | Msa0051310:intron | 50.0% |
| TTTCAGCCCCCTCTATCTCT+CGG | + | chr1_2:5416899-5416918 | None:intergenic | 50.0% | |
| GATAGAGGGGGCTGAAACAA+AGG | - | chr1_2:5416902-5416921 | Msa0051310:CDS | 50.0% | |
| TCTTGGTTACGAGAAGAGGC+TGG | - | chr1_2:5417034-5417053 | Msa0051310:CDS | 50.0% | |
| CTTGGTTACGAGAAGAGGCT+GGG | - | chr1_2:5417035-5417054 | Msa0051310:CDS | 50.0% | |
| TACGAGAAGAGGCTGGGATT+TGG | - | chr1_2:5417041-5417060 | Msa0051310:CDS | 50.0% | |
| ACGAGAAGAGGCTGGGATTT+GGG | - | chr1_2:5417042-5417061 | Msa0051310:CDS | 50.0% | |
| TCCCCCAGACTAGGTCAATT+TGG | - | chr1_2:5417153-5417172 | Msa0051310:intron | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | + | chr1_2:5417160-5417179 | None:intergenic | 50.0% | |
| GGTCTTTGGGTGAGACTCTT+AGG | - | chr1_2:5417449-5417468 | Msa0051310:intron | 50.0% | |
| GAGCTCTCTCCCTCAAACAT+AGG | - | chr1_2:5417643-5417662 | Msa0051310:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_2:5418396-5418415 | Msa0051310:intron | 50.0% | |
| ACAAGGGGATAGCAAGGCAA+AGG | - | chr1_2:5418628-5418647 | Msa0051310:intron | 50.0% | |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_2:5418802-5418821 | None:intergenic | 50.0% | |
| CATCCACCCTGGATAGAATC+AGG | - | chr1_2:5419333-5419352 | Msa0051310:intron | 50.0% | |
| CTTCCTGATTCTATCCAGGG+TGG | + | chr1_2:5419339-5419358 | None:intergenic | 50.0% | |
| CACCCTGGATAGAATCAGGA+AGG | - | chr1_2:5419337-5419356 | Msa0051310:intron | 50.0% | |
| AACTCCGTCCCATGTCCTAA+AGG | - | chr1_2:5419658-5419677 | Msa0051310:intron | 50.0% | |
| ACTCCGTCCCATGTCCTAAA+GGG | - | chr1_2:5419659-5419678 | Msa0051310:intron | 50.0% | |
| ! | CTCCTTTTGTGGAGGTTGGA+TGG | - | chr1_2:5419693-5419712 | Msa0051310:intron | 50.0% |
| GGATGGAAGCAGATCTTGGG+AGG | - | chr1_2:5415647-5415666 | Msa0051310:CDS | 55.0% | |
| !! | GGTGGCCGATTTTCAGAGCA+CGG | - | chr1_2:5416689-5416708 | Msa0051310:CDS | 55.0% |
| !! | GGCCACCGTGCTCTGAAAAT+CGG | + | chr1_2:5416697-5416716 | None:intergenic | 55.0% |
| !! | GGTGGCCGATTTGGTAAGCA+CGG | - | chr1_2:5416761-5416780 | Msa0051310:CDS | 55.0% |
| GGCCACCGTGCTTACCAAAT+CGG | + | chr1_2:5416769-5416788 | None:intergenic | 55.0% | |
| AGGTCATTGTTGGGCCGAAC+TGG | - | chr1_2:5417663-5417682 | Msa0051310:intron | 55.0% | |
| GGTCATTGTTGGGCCGAACT+GGG | - | chr1_2:5417664-5417683 | Msa0051310:intron | 55.0% | |
| TGTTGAGTCTGCTTCCCCTC+AGG | - | chr1_2:5418679-5418698 | Msa0051310:intron | 55.0% | |
| TGACTGCATCAGCCACCTGA+GGG | + | chr1_2:5418697-5418716 | None:intergenic | 55.0% | |
| ! | GTTTGGGATGGAACAGCAGC+AGG | + | chr1_2:5418731-5418750 | None:intergenic | 55.0% |
| CCTCGCTTCTTAGTCTGGAC+AGG | + | chr1_2:5418797-5418816 | None:intergenic | 55.0% | |
| CCTGTCCAGACTAAGAAGCG+AGG | - | chr1_2:5418794-5418813 | Msa0051310:intron | 55.0% | |
| CTTAAAGCCGGCAATGTCGG+TGG | - | chr1_2:5419419-5419438 | Msa0051310:intron | 55.0% | |
| ACGTGAACCACCGACATTGC+CGG | + | chr1_2:5419429-5419448 | None:intergenic | 55.0% | |
| TGTCGGTGGTTCACGTACTC+TGG | - | chr1_2:5419433-5419452 | Msa0051310:intron | 55.0% | |
| GGCCATCCAACCTCCACAAA+AGG | + | chr1_2:5419698-5419717 | None:intergenic | 55.0% | |
| !! | TTGGTTCTGCCTCCTGCGCT+AGG | - | chr1_2:5416280-5416299 | Msa0051310:intron | 60.0% |
| CTTCACATGCCTAGCGCAGG+AGG | + | chr1_2:5416292-5416311 | None:intergenic | 60.0% | |
| TAGGCACGTGTCACGGGCTT+TGG | - | chr1_2:5416422-5416441 | Msa0051310:intron | 60.0% | |
| !! | GGCCGATTTTCAGAGCACGG+TGG | - | chr1_2:5416692-5416711 | Msa0051310:CDS | 60.0% |
| !! | CAGAGCACGGTGGCCGATTT+TGG | - | chr1_2:5416702-5416721 | Msa0051310:CDS | 60.0% |
| !! | GGCCGATTTGGTAAGCACGG+TGG | - | chr1_2:5416764-5416783 | Msa0051310:CDS | 60.0% |
| TGAGTCTGCTTCCCCTCAGG+TGG | - | chr1_2:5418682-5418701 | Msa0051310:intron | 60.0% | |
| GACTGCATCAGCCACCTGAG+GGG | + | chr1_2:5418696-5418715 | None:intergenic | 60.0% | |
| GTGACTGCATCAGCCACCTG+AGG | + | chr1_2:5418698-5418717 | None:intergenic | 60.0% | |
| GGATGGAACAGCAGCAGGTG+TGG | + | chr1_2:5418726-5418745 | None:intergenic | 60.0% | |
| ! | CTGTCTCATGTGGAGGCGCG+CGG | - | chr1_2:5416359-5416378 | Msa0051310:intron | 65.0% |
| GCTGCTCTCTCCCCCAGACT+AGG | - | chr1_2:5417144-5417163 | Msa0051310:intron | 65.0% | |
| CCAGGGTGGATGCCTCTGTG+AGG | + | chr1_2:5419325-5419344 | None:intergenic | 65.0% | |
| !! | CCTCACAGAGGCATCCACCC+TGG | - | chr1_2:5419322-5419341 | Msa0051310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5415618 | 5419861 | 5415618 | ID=Msa0051310;Name=Msa0051310 |
| chr1_2 | mRNA | 5415618 | 5419861 | 5415618 | ID=Msa0051310-mRNA-1;Parent=Msa0051310;Name=Msa0051310-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0.66|0.5|4|0|377 |
| chr1_2 | exon | 5419733 | 5419861 | 5419733 | ID=Msa0051310-mRNA-1:exon:1640;Parent=Msa0051310-mRNA-1 |
| chr1_2 | exon | 5416534 | 5417144 | 5416534 | ID=Msa0051310-mRNA-1:exon:1639;Parent=Msa0051310-mRNA-1 |
| chr1_2 | exon | 5416025 | 5416124 | 5416025 | ID=Msa0051310-mRNA-1:exon:1638;Parent=Msa0051310-mRNA-1 |
| chr1_2 | exon | 5415618 | 5415911 | 5415618 | ID=Msa0051310-mRNA-1:exon:1637;Parent=Msa0051310-mRNA-1 |
| chr1_2 | CDS | 5419733 | 5419861 | 5419733 | ID=Msa0051310-mRNA-1:cds;Parent=Msa0051310-mRNA-1 |
| chr1_2 | CDS | 5416534 | 5417144 | 5416534 | ID=Msa0051310-mRNA-1:cds;Parent=Msa0051310-mRNA-1 |
| chr1_2 | CDS | 5416025 | 5416124 | 5416025 | ID=Msa0051310-mRNA-1:cds;Parent=Msa0051310-mRNA-1 |
| chr1_2 | CDS | 5415618 | 5415911 | 5415618 | ID=Msa0051310-mRNA-1:cds;Parent=Msa0051310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
