Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051330 | XP_003589275.1 | 87.864 | 206 | 13 | 2 | 1 | 205 | 1 | 195 | 4.51e-125 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051330 | sp|Q8RYD1|REM16_ARATH | 53.600 | 125 | 55 | 3 | 8 | 130 | 11 | 134 | 1.68e-38 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051330 | G7I4K9 | 87.864 | 206 | 13 | 2 | 1 | 205 | 1 | 195 | 2.16e-125 | 367 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051330 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051330 | MtrunA17_Chr1g0154151 | 87.719 | 171 | 9 | 2 | 36 | 205 | 19 | 178 | 1.75e-102 | 299 |
| Msa0051330 | MtrunA17_Chr1g0154171 | 71.090 | 211 | 49 | 4 | 2 | 206 | 3 | 207 | 3.03e-101 | 297 |
| Msa0051330 | MtrunA17_Chr1g0154211 | 61.765 | 238 | 59 | 3 | 3 | 208 | 4 | 241 | 1.76e-97 | 289 |
| Msa0051330 | MtrunA17_Chr1g0154191 | 70.202 | 198 | 53 | 3 | 1 | 192 | 1 | 198 | 3.88e-95 | 282 |
| Msa0051330 | MtrunA17_Chr1g0154241 | 57.959 | 245 | 69 | 2 | 1 | 211 | 1 | 245 | 1.01e-94 | 277 |
| Msa0051330 | MtrunA17_Chr1g0154131 | 69.347 | 199 | 39 | 6 | 6 | 202 | 168 | 346 | 1.86e-87 | 266 |
| Msa0051330 | MtrunA17_Chr1g0154131 | 70.186 | 161 | 47 | 1 | 4 | 163 | 8 | 168 | 8.10e-74 | 231 |
| Msa0051330 | MtrunA17_Chr1g0154251 | 54.118 | 255 | 70 | 5 | 5 | 212 | 10 | 264 | 1.15e-85 | 262 |
| Msa0051330 | MtrunA17_Chr1g0154111 | 63.594 | 217 | 63 | 5 | 5 | 206 | 9 | 224 | 5.93e-85 | 263 |
| Msa0051330 | MtrunA17_Chr1g0154111 | 56.021 | 191 | 66 | 9 | 36 | 208 | 368 | 558 | 1.08e-51 | 175 |
| Msa0051330 | MtrunA17_Chr1g0154161 | 61.611 | 211 | 33 | 3 | 3 | 211 | 11 | 175 | 2.85e-83 | 250 |
| Msa0051330 | MtrunA17_Chr1g0154101 | 71.605 | 162 | 44 | 2 | 4 | 163 | 7 | 168 | 6.45e-74 | 239 |
| Msa0051330 | MtrunA17_Chr1g0154101 | 47.653 | 277 | 64 | 5 | 6 | 202 | 168 | 443 | 1.23e-70 | 230 |
| Msa0051330 | MtrunA17_Chr1g0154071 | 65.680 | 169 | 53 | 3 | 10 | 177 | 145 | 309 | 2.22e-65 | 209 |
| Msa0051330 | MtrunA17_Chr1g0154071 | 72.093 | 129 | 35 | 1 | 4 | 131 | 10 | 138 | 3.72e-60 | 196 |
| Msa0051330 | MtrunA17_Chr1g0154041 | 38.235 | 102 | 61 | 2 | 21 | 121 | 15 | 115 | 2.68e-15 | 73.9 |
| Msa0051330 | MtrunA17_Chr3g0131891 | 31.159 | 138 | 84 | 5 | 20 | 146 | 17 | 154 | 1.21e-13 | 68.6 |
| Msa0051330 | MtrunA17_Chr7g0233561 | 31.298 | 131 | 81 | 3 | 22 | 144 | 19 | 148 | 5.19e-12 | 63.9 |
| Msa0051330 | MtrunA17_Chr4g0033961 | 37.500 | 88 | 43 | 1 | 34 | 109 | 8 | 95 | 1.64e-11 | 62.8 |
| Msa0051330 | MtrunA17_Chr3g0077451 | 43.662 | 71 | 37 | 1 | 39 | 109 | 18 | 85 | 2.00e-11 | 61.6 |
| Msa0051330 | MtrunA17_Chr1g0162441 | 35.955 | 89 | 45 | 1 | 33 | 109 | 8 | 96 | 3.34e-11 | 62.0 |
| Msa0051330 | MtrunA17_Chr7g0233531 | 38.667 | 75 | 45 | 1 | 37 | 110 | 2 | 76 | 6.98e-11 | 60.5 |
| Msa0051330 | MtrunA17_Chr3g0077411 | 36.082 | 97 | 59 | 3 | 20 | 113 | 260 | 356 | 7.75e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051330 | AT4G33280.2 | 53.600 | 125 | 55 | 3 | 8 | 130 | 11 | 134 | 2.93e-40 | 139 |
| Msa0051330 | AT4G33280.1 | 53.600 | 125 | 55 | 3 | 8 | 130 | 11 | 134 | 1.70e-39 | 138 |
| Msa0051330 | AT4G33280.3 | 53.600 | 125 | 55 | 3 | 8 | 130 | 11 | 134 | 3.51e-39 | 139 |
| Msa0051330 | AT4G34400.2 | 36.047 | 86 | 54 | 1 | 35 | 119 | 29 | 114 | 2.71e-16 | 77.0 |
| Msa0051330 | AT4G34400.1 | 36.047 | 86 | 54 | 1 | 35 | 119 | 29 | 114 | 2.71e-16 | 77.0 |
| Msa0051330 | AT4G01580.1 | 36.842 | 95 | 47 | 2 | 34 | 116 | 32 | 125 | 4.69e-13 | 65.5 |
| Msa0051330 | AT3G18960.2 | 37.895 | 95 | 46 | 2 | 34 | 116 | 32 | 125 | 6.15e-13 | 65.5 |
| Msa0051330 | AT3G18960.1 | 37.895 | 95 | 46 | 2 | 34 | 116 | 32 | 125 | 7.52e-13 | 65.5 |
| Msa0051330 | AT1G49475.1 | 39.241 | 79 | 48 | 0 | 31 | 109 | 44 | 122 | 2.05e-12 | 63.9 |
| Msa0051330 | AT3G18990.1 | 37.363 | 91 | 51 | 2 | 25 | 109 | 5 | 95 | 2.66e-12 | 65.1 |
| Msa0051330 | AT3G18990.2 | 38.043 | 92 | 55 | 2 | 19 | 109 | 5 | 95 | 3.21e-12 | 65.1 |
| Msa0051330 | AT3G18960.3 | 40.230 | 87 | 50 | 2 | 30 | 116 | 4 | 88 | 8.38e-12 | 61.6 |
| Msa0051330 | AT5G66980.1 | 42.222 | 90 | 46 | 3 | 33 | 117 | 21 | 109 | 9.03e-12 | 63.5 |
Find 36 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.145770 | 1_2:+5424116 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5424130 | Msa0051330:CDS |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.318640 | 1_2:+5423699 | None:intergenic |
| CTTGGGAAGAAGACATTTAC+TGG | 0.331011 | 1_2:-5425529 | Msa0051330:CDS |
| TGGAAGATAGCAGCAGATCT+TGG | 0.385678 | 1_2:-5425547 | Msa0051330:CDS |
| ACTCGGCGAAATGGATGAAC+TGG | 0.406708 | 1_2:+5425498 | None:intergenic |
| CGAAATGGATGAACTGGAAA+TGG | 0.412881 | 1_2:+5425504 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.429833 | 1_2:+5424117 | None:intergenic |
| GTCAATACTGTTCTTAATGC+TGG | 0.435062 | 1_2:-5423833 | Msa0051330:CDS |
| CATTAGCCGTGAACTGCTCA+TGG | 0.437470 | 1_2:+5423795 | None:intergenic |
| GGAAGATAGCAGCAGATCTT+GGG | 0.451868 | 1_2:-5425546 | Msa0051330:CDS |
| AAACTGAACAAGAAGACATC+AGG | 0.455142 | 1_2:-5423886 | Msa0051330:CDS |
| CCTCGCTTCTTAGTCTGGAC+AGG | 0.460020 | 1_2:+5423704 | None:intergenic |
| ACAGGTGTAACCTCATCAAT+AGG | 0.479304 | 1_2:+5423722 | None:intergenic |
| TTCCTTGTCTTTAAATACAA+AGG | 0.487038 | 1_2:-5423998 | Msa0051330:CDS |
| GTGCTTCCCTCCCAATCAAC+CGG | 0.488304 | 1_2:-5423761 | Msa0051330:CDS |
| CCTCCCAATCAACCGGCAAA+AGG | 0.494755 | 1_2:-5423754 | Msa0051330:CDS |
| CACCTTTGTATTTAAAGACA+AGG | 0.497369 | 1_2:+5423996 | None:intergenic |
| AGTGGAGTTGAATGGAATGT+AGG | 0.504585 | 1_2:-5424103 | Msa0051330:CDS |
| TGTGAAGAAACTCGGCGAAA+TGG | 0.505014 | 1_2:+5425489 | None:intergenic |
| AAGGTCCTAGTGGAGTTGAA+TGG | 0.506877 | 1_2:-5424111 | Msa0051330:CDS |
| AACCTCATCAATAGGCTGCT+TGG | 0.514447 | 1_2:+5423730 | None:intergenic |
| TGCTTCCCATGAGCAGTTCA+CGG | 0.521710 | 1_2:-5423801 | Msa0051330:CDS |
| AGATAATACTGTTTACTTCG+TGG | 0.532646 | 1_2:-5424068 | Msa0051330:CDS |
| CTGTTTACTTCGTGGACGGT+TGG | 0.535957 | 1_2:-5424060 | Msa0051330:CDS |
| ACAAGAAGACATCAGGGAGA+AGG | 0.583899 | 1_2:-5423879 | Msa0051330:CDS |
| ATCAGTGGTGTGAAGAAACT+CGG | 0.584261 | 1_2:+5425481 | None:intergenic |
| AATACTGTTTACTTCGTGGA+CGG | 0.589633 | 1_2:-5424064 | Msa0051330:CDS |
| GTGGAGTTGAATGGAATGTA+GGG | 0.596552 | 1_2:-5424102 | Msa0051330:CDS |
| AACTGAACAAGAAGACATCA+GGG | 0.597442 | 1_2:-5423885 | Msa0051330:CDS |
| ATTAGCCGTGAACTGCTCAT+GGG | 0.610446 | 1_2:+5423796 | None:intergenic |
| AAGTTGCTGTTCAAAATCAG+TGG | 0.622618 | 1_2:+5425466 | None:intergenic |
| ACATTCCATTCAACTCCACT+AGG | 0.628309 | 1_2:+5424106 | None:intergenic |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5424121 | Msa0051330:CDS |
| GACCAAGCAGCCTATTGATG+AGG | 0.645508 | 1_2:-5423732 | Msa0051330:CDS |
| CCTGTCCAGACTAAGAAGCG+AGG | 0.723376 | 1_2:-5423704 | Msa0051330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTTTTATAAA+AGG | - | chr1_2:5424240-5424259 | Msa0051330:intron | 0.0% |
| !!! | AAATATTATTTTTATTTTTA+AGG | + | chr1_2:5424321-5424340 | None:intergenic | 0.0% |
| !!! | TTTTATTTTATTTTTATAAA+AGG | - | chr1_2:5424240-5424259 | Msa0051330:intron | 0.0% |
| !!! | AAATATTATTTTTATTTTTA+AGG | + | chr1_2:5424321-5424340 | None:intergenic | 0.0% |
| !!! | AATCTTTATAAAGTTTTCTT+AGG | - | chr1_2:5423818-5423837 | Msa0051330:CDS | 15.0% |
| !!! | ATAATTTAAGAGTTTGTTTA+CGG | - | chr1_2:5424345-5424364 | Msa0051330:intron | 15.0% |
| !!! | GAAATTTATAATTTTATTGC+AGG | - | chr1_2:5425012-5425031 | Msa0051330:intron | 15.0% |
| !!! | TTTAATGTTTTAATCTTTCA+AGG | - | chr1_2:5425238-5425257 | Msa0051330:intron | 15.0% |
| !!! | AATCTTTATAAAGTTTTCTT+AGG | - | chr1_2:5423818-5423837 | Msa0051330:CDS | 15.0% |
| !!! | ATAATTTAAGAGTTTGTTTA+CGG | - | chr1_2:5424345-5424364 | Msa0051330:intron | 15.0% |
| !!! | GAAATTTATAATTTTATTGC+AGG | - | chr1_2:5425012-5425031 | Msa0051330:intron | 15.0% |
| !!! | TTTAATGTTTTAATCTTTCA+AGG | - | chr1_2:5425238-5425257 | Msa0051330:intron | 15.0% |
| !!! | TTTTTCTTTCATTTAGAACA+TGG | + | chr1_2:5423795-5423814 | None:intergenic | 20.0% |
| !!! | TTTATAAAGTTTTCTTAGGT+GGG | - | chr1_2:5423822-5423841 | Msa0051330:CDS | 20.0% |
| !! | AGATGCAAAATTTAAAAGAT+GGG | + | chr1_2:5423941-5423960 | None:intergenic | 20.0% |
| !! | AAGATGCAAAATTTAAAAGA+TGG | + | chr1_2:5423942-5423961 | None:intergenic | 20.0% |
| !!! | TTGTTTTTAAATAACAGCTT+AGG | - | chr1_2:5424042-5424061 | Msa0051330:CDS | 20.0% |
| !! | ATAAAAAATGTACCAAAATG+CGG | + | chr1_2:5424226-5424245 | None:intergenic | 20.0% |
| !!! | TAATTTAAGAGTTTGTTTAC+GGG | - | chr1_2:5424346-5424365 | Msa0051330:intron | 20.0% |
| !!! | ACAAAAGCATGAATTTATTA+GGG | + | chr1_2:5424660-5424679 | None:intergenic | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5425043-5425062 | None:intergenic | 20.0% |
| !!! | TTCTGATTGTTTACTTTTTT+CGG | + | chr1_2:5425532-5425551 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCATTTAGAACA+TGG | + | chr1_2:5423795-5423814 | None:intergenic | 20.0% |
| !!! | TTTATAAAGTTTTCTTAGGT+GGG | - | chr1_2:5423822-5423841 | Msa0051330:CDS | 20.0% |
| !! | AGATGCAAAATTTAAAAGAT+GGG | + | chr1_2:5423941-5423960 | None:intergenic | 20.0% |
| !! | AAGATGCAAAATTTAAAAGA+TGG | + | chr1_2:5423942-5423961 | None:intergenic | 20.0% |
| !!! | TTGTTTTTAAATAACAGCTT+AGG | - | chr1_2:5424042-5424061 | Msa0051330:CDS | 20.0% |
| !! | ATAAAAAATGTACCAAAATG+CGG | + | chr1_2:5424226-5424245 | None:intergenic | 20.0% |
| !!! | TAATTTAAGAGTTTGTTTAC+GGG | - | chr1_2:5424346-5424365 | Msa0051330:intron | 20.0% |
| !!! | ACAAAAGCATGAATTTATTA+GGG | + | chr1_2:5424660-5424679 | None:intergenic | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5425043-5425062 | None:intergenic | 20.0% |
| !!! | TTCTGATTGTTTACTTTTTT+CGG | + | chr1_2:5425532-5425551 | None:intergenic | 20.0% |
| !! | CTTTATAAAGTTTTCTTAGG+TGG | - | chr1_2:5423821-5423840 | Msa0051330:CDS | 25.0% |
| ! | TTAAATAACAGCTTAGGAAT+AGG | - | chr1_2:5424048-5424067 | Msa0051330:CDS | 25.0% |
| ! | AAAGAAAAAAAATCTCAGCT+CGG | - | chr1_2:5424145-5424164 | Msa0051330:CDS | 25.0% |
| !!! | TACGGGCTTTTTAATTTAAA+AGG | - | chr1_2:5424363-5424382 | Msa0051330:intron | 25.0% |
| ! | TAAACACTTGAAAGATTGAA+AGG | + | chr1_2:5424609-5424628 | None:intergenic | 25.0% |
| !! | CACAAAAGCATGAATTTATT+AGG | + | chr1_2:5424661-5424680 | None:intergenic | 25.0% |
| !! | CTAATAAATTCATGCTTTTG+TGG | - | chr1_2:5424659-5424678 | Msa0051330:intron | 25.0% |
| ! | TGGCTTAAAGGAAATTAATA+AGG | - | chr1_2:5424679-5424698 | Msa0051330:intron | 25.0% |
| !!! | GTAGTGTCATTTCTAAATAA+TGG | - | chr1_2:5424707-5424726 | Msa0051330:intron | 25.0% |
| !!! | TTGTCGAATTTTTTATGACA+TGG | + | chr1_2:5424784-5424803 | None:intergenic | 25.0% |
| ! | TAATGTATCGTAATCTCAAA+TGG | - | chr1_2:5424990-5425009 | Msa0051330:intron | 25.0% |
| ! | TTCCTTGTCTTTAAATACAA+AGG | - | chr1_2:5425205-5425224 | Msa0051330:intron | 25.0% |
| !! | CTTTATAAAGTTTTCTTAGG+TGG | - | chr1_2:5423821-5423840 | Msa0051330:CDS | 25.0% |
| ! | TTAAATAACAGCTTAGGAAT+AGG | - | chr1_2:5424048-5424067 | Msa0051330:CDS | 25.0% |
| ! | AAAGAAAAAAAATCTCAGCT+CGG | - | chr1_2:5424145-5424164 | Msa0051330:CDS | 25.0% |
| !!! | TACGGGCTTTTTAATTTAAA+AGG | - | chr1_2:5424363-5424382 | Msa0051330:intron | 25.0% |
| ! | TAAACACTTGAAAGATTGAA+AGG | + | chr1_2:5424609-5424628 | None:intergenic | 25.0% |
| !! | CACAAAAGCATGAATTTATT+AGG | + | chr1_2:5424661-5424680 | None:intergenic | 25.0% |
| !! | CTAATAAATTCATGCTTTTG+TGG | - | chr1_2:5424659-5424678 | Msa0051330:intron | 25.0% |
| ! | TGGCTTAAAGGAAATTAATA+AGG | - | chr1_2:5424679-5424698 | Msa0051330:intron | 25.0% |
| !!! | GTAGTGTCATTTCTAAATAA+TGG | - | chr1_2:5424707-5424726 | Msa0051330:intron | 25.0% |
| !!! | TTGTCGAATTTTTTATGACA+TGG | + | chr1_2:5424784-5424803 | None:intergenic | 25.0% |
| ! | TAATGTATCGTAATCTCAAA+TGG | - | chr1_2:5424990-5425009 | Msa0051330:intron | 25.0% |
| ! | TTCCTTGTCTTTAAATACAA+AGG | - | chr1_2:5425205-5425224 | Msa0051330:intron | 25.0% |
| !!! | ACGTTTATTTTTTCGGGTTT+AGG | - | chr1_2:5424089-5424108 | Msa0051330:CDS | 30.0% |
| ! | ATTGTTGAAACACGTAGTTT+TGG | + | chr1_2:5424267-5424286 | None:intergenic | 30.0% |
| !! | ATTTTGATACAAGCAAAGAC+AGG | - | chr1_2:5424396-5424415 | Msa0051330:intron | 30.0% |
| AAACTTGAACCTAGTAAACT+TGG | - | chr1_2:5424495-5424514 | Msa0051330:intron | 30.0% | |
| AACTTGAACCTAGTAAACTT+GGG | - | chr1_2:5424496-5424515 | Msa0051330:intron | 30.0% | |
| TCACAATTCTTAAGTAAGCA+TGG | + | chr1_2:5424560-5424579 | None:intergenic | 30.0% | |
| ! | AATTCGACAAAGTTTTACCT+TGG | - | chr1_2:5424794-5424813 | Msa0051330:intron | 30.0% |
| TAAACCCTAAACTCGATAAA+AGG | + | chr1_2:5424846-5424865 | None:intergenic | 30.0% | |
| !! | TTTTATCGAGTTTAGGGTTT+AGG | - | chr1_2:5424845-5424864 | Msa0051330:intron | 30.0% |
| GTACTTGTGATGATTAATAG+CGG | - | chr1_2:5424939-5424958 | Msa0051330:intron | 30.0% | |
| AGATAATACTGTTTACTTCG+TGG | - | chr1_2:5425135-5425154 | Msa0051330:intron | 30.0% | |
| CACCTTTGTATTTAAAGACA+AGG | + | chr1_2:5425210-5425229 | None:intergenic | 30.0% | |
| ! | TCCTATTTTGTTGGAAAATG+TGG | - | chr1_2:5425286-5425305 | Msa0051330:intron | 30.0% |
| ! | CCTATTTTGTTGGAAAATGT+GGG | - | chr1_2:5425287-5425306 | Msa0051330:intron | 30.0% |
| !!! | TGATTGTTTACTTTTTTCGG+TGG | + | chr1_2:5425529-5425548 | None:intergenic | 30.0% |
| !!! | ACGTTTATTTTTTCGGGTTT+AGG | - | chr1_2:5424089-5424108 | Msa0051330:CDS | 30.0% |
| ! | ATTGTTGAAACACGTAGTTT+TGG | + | chr1_2:5424267-5424286 | None:intergenic | 30.0% |
| !! | ATTTTGATACAAGCAAAGAC+AGG | - | chr1_2:5424396-5424415 | Msa0051330:intron | 30.0% |
| AAACTTGAACCTAGTAAACT+TGG | - | chr1_2:5424495-5424514 | Msa0051330:intron | 30.0% | |
| AACTTGAACCTAGTAAACTT+GGG | - | chr1_2:5424496-5424515 | Msa0051330:intron | 30.0% | |
| TCACAATTCTTAAGTAAGCA+TGG | + | chr1_2:5424560-5424579 | None:intergenic | 30.0% | |
| ! | AATTCGACAAAGTTTTACCT+TGG | - | chr1_2:5424794-5424813 | Msa0051330:intron | 30.0% |
| TAAACCCTAAACTCGATAAA+AGG | + | chr1_2:5424846-5424865 | None:intergenic | 30.0% | |
| !! | TTTTATCGAGTTTAGGGTTT+AGG | - | chr1_2:5424845-5424864 | Msa0051330:intron | 30.0% |
| GTACTTGTGATGATTAATAG+CGG | - | chr1_2:5424939-5424958 | Msa0051330:intron | 30.0% | |
| AGATAATACTGTTTACTTCG+TGG | - | chr1_2:5425135-5425154 | Msa0051330:intron | 30.0% | |
| CACCTTTGTATTTAAAGACA+AGG | + | chr1_2:5425210-5425229 | None:intergenic | 30.0% | |
| ! | TCCTATTTTGTTGGAAAATG+TGG | - | chr1_2:5425286-5425305 | Msa0051330:intron | 30.0% |
| ! | CCTATTTTGTTGGAAAATGT+GGG | - | chr1_2:5425287-5425306 | Msa0051330:intron | 30.0% |
| !!! | TGATTGTTTACTTTTTTCGG+TGG | + | chr1_2:5425529-5425548 | None:intergenic | 30.0% |
| ! | AAGTTGCTGTTCAAAATCAG+TGG | + | chr1_2:5423740-5423759 | None:intergenic | 35.0% |
| !!! | TCATGTTCATGCTACTTTTC+AGG | - | chr1_2:5423876-5423895 | Msa0051330:CDS | 35.0% |
| !!! | TGAAGAAAGCTTTGAGCTTT+TGG | - | chr1_2:5423994-5424013 | Msa0051330:CDS | 35.0% |
| !!! | GGTGGAGACGTTTATTTTTT+CGG | - | chr1_2:5424082-5424101 | Msa0051330:CDS | 35.0% |
| !!! | GTGGAGACGTTTATTTTTTC+GGG | - | chr1_2:5424083-5424102 | Msa0051330:CDS | 35.0% |
| AACTACGTGTTTCAACAATC+TGG | - | chr1_2:5424268-5424287 | Msa0051330:intron | 35.0% | |
| !!! | TCCGTGCTATGTTTTGAAAT+CGG | - | chr1_2:5424469-5424488 | Msa0051330:intron | 35.0% |
| ! | TTCATGCTTTTGTGGCTTAA+AGG | - | chr1_2:5424667-5424686 | Msa0051330:intron | 35.0% |
| TAGATAGTGTTTGCAGAACA+TGG | + | chr1_2:5424748-5424767 | None:intergenic | 35.0% | |
| TGTTAGATAGTCAACAACCA+AGG | + | chr1_2:5424814-5424833 | None:intergenic | 35.0% | |
| CTAAACTCGATAAAAGGAGA+GGG | + | chr1_2:5424840-5424859 | None:intergenic | 35.0% | |
| ! | CTCTCCTTTTATCGAGTTTA+GGG | - | chr1_2:5424839-5424858 | Msa0051330:intron | 35.0% |
| AATACTGTTTACTTCGTGGA+CGG | - | chr1_2:5425139-5425158 | Msa0051330:intron | 35.0% | |
| ! | AGAAAGCTTTTGTGAGAAAG+CGG | - | chr1_2:5425261-5425280 | Msa0051330:intron | 35.0% |
| ! | CCCACATTTTCCAACAAAAT+AGG | + | chr1_2:5425290-5425309 | None:intergenic | 35.0% |
| AAACTGAACAAGAAGACATC+AGG | - | chr1_2:5425317-5425336 | Msa0051330:intron | 35.0% | |
| AACTGAACAAGAAGACATCA+GGG | - | chr1_2:5425318-5425337 | Msa0051330:intron | 35.0% | |
| GTCAATACTGTTCTTAATGC+TGG | - | chr1_2:5425370-5425389 | Msa0051330:intron | 35.0% | |
| ! | AAGTTGCTGTTCAAAATCAG+TGG | + | chr1_2:5423740-5423759 | None:intergenic | 35.0% |
| !!! | TCATGTTCATGCTACTTTTC+AGG | - | chr1_2:5423876-5423895 | Msa0051330:CDS | 35.0% |
| !!! | TGAAGAAAGCTTTGAGCTTT+TGG | - | chr1_2:5423994-5424013 | Msa0051330:CDS | 35.0% |
| !!! | GGTGGAGACGTTTATTTTTT+CGG | - | chr1_2:5424082-5424101 | Msa0051330:CDS | 35.0% |
| !!! | GTGGAGACGTTTATTTTTTC+GGG | - | chr1_2:5424083-5424102 | Msa0051330:CDS | 35.0% |
| AACTACGTGTTTCAACAATC+TGG | - | chr1_2:5424268-5424287 | Msa0051330:intron | 35.0% | |
| !!! | TCCGTGCTATGTTTTGAAAT+CGG | - | chr1_2:5424469-5424488 | Msa0051330:intron | 35.0% |
| ! | TTCATGCTTTTGTGGCTTAA+AGG | - | chr1_2:5424667-5424686 | Msa0051330:intron | 35.0% |
| TAGATAGTGTTTGCAGAACA+TGG | + | chr1_2:5424748-5424767 | None:intergenic | 35.0% | |
| TGTTAGATAGTCAACAACCA+AGG | + | chr1_2:5424814-5424833 | None:intergenic | 35.0% | |
| CTAAACTCGATAAAAGGAGA+GGG | + | chr1_2:5424840-5424859 | None:intergenic | 35.0% | |
| ! | CTCTCCTTTTATCGAGTTTA+GGG | - | chr1_2:5424839-5424858 | Msa0051330:intron | 35.0% |
| AATACTGTTTACTTCGTGGA+CGG | - | chr1_2:5425139-5425158 | Msa0051330:intron | 35.0% | |
| ! | AGAAAGCTTTTGTGAGAAAG+CGG | - | chr1_2:5425261-5425280 | Msa0051330:intron | 35.0% |
| ! | CCCACATTTTCCAACAAAAT+AGG | + | chr1_2:5425290-5425309 | None:intergenic | 35.0% |
| AAACTGAACAAGAAGACATC+AGG | - | chr1_2:5425317-5425336 | Msa0051330:intron | 35.0% | |
| AACTGAACAAGAAGACATCA+GGG | - | chr1_2:5425318-5425337 | Msa0051330:intron | 35.0% | |
| GTCAATACTGTTCTTAATGC+TGG | - | chr1_2:5425370-5425389 | Msa0051330:intron | 35.0% | |
| CTTGGGAAGAAGACATTTAC+TGG | - | chr1_2:5423674-5423693 | Msa0051330:CDS | 40.0% | |
| CGAAATGGATGAACTGGAAA+TGG | + | chr1_2:5423702-5423721 | None:intergenic | 40.0% | |
| ATCAGTGGTGTGAAGAAACT+CGG | + | chr1_2:5423725-5423744 | None:intergenic | 40.0% | |
| TAACAGCTTAGGAATAGGCA+TGG | - | chr1_2:5424053-5424072 | Msa0051330:CDS | 40.0% | |
| TTAGGAATAGGCATGGCAAT+GGG | - | chr1_2:5424060-5424079 | Msa0051330:CDS | 40.0% | |
| TTTGCCATCCACGATTTCAA+CGG | - | chr1_2:5424118-5424137 | Msa0051330:CDS | 40.0% | |
| GATACAAGCAAAGACAGGAT+CGG | - | chr1_2:5424401-5424420 | Msa0051330:intron | 40.0% | |
| ATACAAGCAAAGACAGGATC+GGG | - | chr1_2:5424402-5424421 | Msa0051330:intron | 40.0% | |
| CCCGATTTCAAAACATAGCA+CGG | + | chr1_2:5424473-5424492 | None:intergenic | 40.0% | |
| !!! | CCGTGCTATGTTTTGAAATC+GGG | - | chr1_2:5424470-5424489 | Msa0051330:intron | 40.0% |
| CCTAAACTCGATAAAAGGAG+AGG | + | chr1_2:5424841-5424860 | None:intergenic | 40.0% | |
| ! | CCTCTCCTTTTATCGAGTTT+AGG | - | chr1_2:5424838-5424857 | Msa0051330:intron | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5425076-5425095 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5425073-5425092 | Msa0051330:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_2:5425089-5425108 | None:intergenic | 40.0% | |
| ACATTCCATTCAACTCCACT+AGG | + | chr1_2:5425100-5425119 | None:intergenic | 40.0% | |
| AGTGGAGTTGAATGGAATGT+AGG | - | chr1_2:5425100-5425119 | Msa0051330:intron | 40.0% | |
| GTGGAGTTGAATGGAATGTA+GGG | - | chr1_2:5425101-5425120 | Msa0051330:intron | 40.0% | |
| ! | AAAGCGGCTTCCTATTTTGT+TGG | - | chr1_2:5425277-5425296 | Msa0051330:intron | 40.0% |
| ACAGGTGTAACCTCATCAAT+AGG | + | chr1_2:5425484-5425503 | None:intergenic | 40.0% | |
| CTTGGGAAGAAGACATTTAC+TGG | - | chr1_2:5423674-5423693 | Msa0051330:CDS | 40.0% | |
| CGAAATGGATGAACTGGAAA+TGG | + | chr1_2:5423702-5423721 | None:intergenic | 40.0% | |
| ATCAGTGGTGTGAAGAAACT+CGG | + | chr1_2:5423725-5423744 | None:intergenic | 40.0% | |
| TAACAGCTTAGGAATAGGCA+TGG | - | chr1_2:5424053-5424072 | Msa0051330:CDS | 40.0% | |
| TTAGGAATAGGCATGGCAAT+GGG | - | chr1_2:5424060-5424079 | Msa0051330:CDS | 40.0% | |
| TTTGCCATCCACGATTTCAA+CGG | - | chr1_2:5424118-5424137 | Msa0051330:CDS | 40.0% | |
| GATACAAGCAAAGACAGGAT+CGG | - | chr1_2:5424401-5424420 | Msa0051330:intron | 40.0% | |
| ATACAAGCAAAGACAGGATC+GGG | - | chr1_2:5424402-5424421 | Msa0051330:intron | 40.0% | |
| CCCGATTTCAAAACATAGCA+CGG | + | chr1_2:5424473-5424492 | None:intergenic | 40.0% | |
| !!! | CCGTGCTATGTTTTGAAATC+GGG | - | chr1_2:5424470-5424489 | Msa0051330:intron | 40.0% |
| CCTAAACTCGATAAAAGGAG+AGG | + | chr1_2:5424841-5424860 | None:intergenic | 40.0% | |
| ! | CCTCTCCTTTTATCGAGTTT+AGG | - | chr1_2:5424838-5424857 | Msa0051330:intron | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5425076-5425095 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5425073-5425092 | Msa0051330:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_2:5425089-5425108 | None:intergenic | 40.0% | |
| ACATTCCATTCAACTCCACT+AGG | + | chr1_2:5425100-5425119 | None:intergenic | 40.0% | |
| AGTGGAGTTGAATGGAATGT+AGG | - | chr1_2:5425100-5425119 | Msa0051330:intron | 40.0% | |
| GTGGAGTTGAATGGAATGTA+GGG | - | chr1_2:5425101-5425120 | Msa0051330:intron | 40.0% | |
| ! | AAAGCGGCTTCCTATTTTGT+TGG | - | chr1_2:5425277-5425296 | Msa0051330:intron | 40.0% |
| ACAGGTGTAACCTCATCAAT+AGG | + | chr1_2:5425484-5425503 | None:intergenic | 40.0% | |
| TGGAAGATAGCAGCAGATCT+TGG | - | chr1_2:5423656-5423675 | Msa0051330:CDS | 45.0% | |
| GGAAGATAGCAGCAGATCTT+GGG | - | chr1_2:5423657-5423676 | Msa0051330:CDS | 45.0% | |
| TGTGAAGAAACTCGGCGAAA+TGG | + | chr1_2:5423717-5423736 | None:intergenic | 45.0% | |
| CTTAGGAATAGGCATGGCAA+TGG | - | chr1_2:5424059-5424078 | Msa0051330:CDS | 45.0% | |
| TAGGAATAGGCATGGCAATG+GGG | - | chr1_2:5424061-5424080 | Msa0051330:CDS | 45.0% | |
| GTTGAAATCGTGGATGGCAA+AGG | + | chr1_2:5424119-5424138 | None:intergenic | 45.0% | |
| TTGCCATCCACGATTTCAAC+GGG | - | chr1_2:5424119-5424138 | Msa0051330:CDS | 45.0% | |
| CTTTCATCCCGTTGAAATCG+TGG | + | chr1_2:5424129-5424148 | None:intergenic | 45.0% | |
| TCCAAGTTCATGTCAAGGTG+GGG | + | chr1_2:5424203-5424222 | None:intergenic | 45.0% | |
| GTCCAAGTTCATGTCAAGGT+GGG | + | chr1_2:5424204-5424223 | None:intergenic | 45.0% | |
| ! | CATGAACTTGGACCGCATTT+TGG | - | chr1_2:5424211-5424230 | Msa0051330:intron | 45.0% |
| TACAAGCAAAGACAGGATCG+GGG | - | chr1_2:5424403-5424422 | Msa0051330:intron | 45.0% | |
| TTCAAAACATAGCACGGACG+CGG | + | chr1_2:5424467-5424486 | None:intergenic | 45.0% | |
| TGGGGAAACCCAAGTTTACT+AGG | + | chr1_2:5424507-5424526 | None:intergenic | 45.0% | |
| TTGGGTTTCCCCATCTAAGT+CGG | - | chr1_2:5424514-5424533 | Msa0051330:intron | 45.0% | |
| GATGATGCAGTCACGAACAT+AGG | - | chr1_2:5424873-5424892 | Msa0051330:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5425090-5425109 | None:intergenic | 45.0% | |
| AAGGTCCTAGTGGAGTTGAA+TGG | - | chr1_2:5425092-5425111 | Msa0051330:intron | 45.0% | |
| ACAAGAAGACATCAGGGAGA+AGG | - | chr1_2:5425324-5425343 | Msa0051330:intron | 45.0% | |
| ATTAGCCGTGAACTGCTCAT+GGG | + | chr1_2:5425410-5425429 | None:intergenic | 45.0% | |
| AACCTCATCAATAGGCTGCT+TGG | + | chr1_2:5425476-5425495 | None:intergenic | 45.0% | |
| TGGAAGATAGCAGCAGATCT+TGG | - | chr1_2:5423656-5423675 | Msa0051330:CDS | 45.0% | |
| GGAAGATAGCAGCAGATCTT+GGG | - | chr1_2:5423657-5423676 | Msa0051330:CDS | 45.0% | |
| TGTGAAGAAACTCGGCGAAA+TGG | + | chr1_2:5423717-5423736 | None:intergenic | 45.0% | |
| CTTAGGAATAGGCATGGCAA+TGG | - | chr1_2:5424059-5424078 | Msa0051330:CDS | 45.0% | |
| TAGGAATAGGCATGGCAATG+GGG | - | chr1_2:5424061-5424080 | Msa0051330:CDS | 45.0% | |
| GTTGAAATCGTGGATGGCAA+AGG | + | chr1_2:5424119-5424138 | None:intergenic | 45.0% | |
| TTGCCATCCACGATTTCAAC+GGG | - | chr1_2:5424119-5424138 | Msa0051330:CDS | 45.0% | |
| CTTTCATCCCGTTGAAATCG+TGG | + | chr1_2:5424129-5424148 | None:intergenic | 45.0% | |
| TCCAAGTTCATGTCAAGGTG+GGG | + | chr1_2:5424203-5424222 | None:intergenic | 45.0% | |
| GTCCAAGTTCATGTCAAGGT+GGG | + | chr1_2:5424204-5424223 | None:intergenic | 45.0% | |
| ! | CATGAACTTGGACCGCATTT+TGG | - | chr1_2:5424211-5424230 | Msa0051330:intron | 45.0% |
| TACAAGCAAAGACAGGATCG+GGG | - | chr1_2:5424403-5424422 | Msa0051330:intron | 45.0% | |
| TTCAAAACATAGCACGGACG+CGG | + | chr1_2:5424467-5424486 | None:intergenic | 45.0% | |
| TGGGGAAACCCAAGTTTACT+AGG | + | chr1_2:5424507-5424526 | None:intergenic | 45.0% | |
| TTGGGTTTCCCCATCTAAGT+CGG | - | chr1_2:5424514-5424533 | Msa0051330:intron | 45.0% | |
| GATGATGCAGTCACGAACAT+AGG | - | chr1_2:5424873-5424892 | Msa0051330:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5425090-5425109 | None:intergenic | 45.0% | |
| AAGGTCCTAGTGGAGTTGAA+TGG | - | chr1_2:5425092-5425111 | Msa0051330:intron | 45.0% | |
| ACAAGAAGACATCAGGGAGA+AGG | - | chr1_2:5425324-5425343 | Msa0051330:intron | 45.0% | |
| ATTAGCCGTGAACTGCTCAT+GGG | + | chr1_2:5425410-5425429 | None:intergenic | 45.0% | |
| AACCTCATCAATAGGCTGCT+TGG | + | chr1_2:5425476-5425495 | None:intergenic | 45.0% | |
| ACTCGGCGAAATGGATGAAC+TGG | + | chr1_2:5423708-5423727 | None:intergenic | 50.0% | |
| CATCCCGTTGAAATCGTGGA+TGG | + | chr1_2:5424125-5424144 | None:intergenic | 50.0% | |
| ATCTCAGCTCGGTACCTGAT+AGG | - | chr1_2:5424156-5424175 | Msa0051330:CDS | 50.0% | |
| TCTCAGCTCGGTACCTGATA+GGG | - | chr1_2:5424157-5424176 | Msa0051330:CDS | 50.0% | |
| GGGGATACTTGAACCCTATC+AGG | + | chr1_2:5424173-5424192 | None:intergenic | 50.0% | |
| TTCATGTCAAGGTGGGGATG+GGG | + | chr1_2:5424197-5424216 | None:intergenic | 50.0% | |
| GTTCATGTCAAGGTGGGGAT+GGG | + | chr1_2:5424198-5424217 | None:intergenic | 50.0% | |
| AGTTCATGTCAAGGTGGGGA+TGG | + | chr1_2:5424199-5424218 | None:intergenic | 50.0% | |
| TCCCCACCTTGACATGAACT+TGG | - | chr1_2:5424199-5424218 | Msa0051330:intron | 50.0% | |
| GGTCCAAGTTCATGTCAAGG+TGG | + | chr1_2:5424205-5424224 | None:intergenic | 50.0% | |
| TGCGGTCCAAGTTCATGTCA+AGG | + | chr1_2:5424208-5424227 | None:intergenic | 50.0% | |
| GACAGGATCGGGGATAGATT+CGG | - | chr1_2:5424413-5424432 | Msa0051330:intron | 50.0% | |
| ACAGGATCGGGGATAGATTC+GGG | - | chr1_2:5424414-5424433 | Msa0051330:intron | 50.0% | |
| TGGGTTTCCCCATCTAAGTC+GGG | - | chr1_2:5424515-5424534 | Msa0051330:intron | 50.0% | |
| ATGCAGTCACGAACATAGGC+AGG | - | chr1_2:5424877-5424896 | Msa0051330:intron | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5425082-5425101 | Msa0051330:intron | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | - | chr1_2:5425143-5425162 | Msa0051330:intron | 50.0% | |
| TGCTTCCCATGAGCAGTTCA+CGG | - | chr1_2:5425402-5425421 | Msa0051330:intron | 50.0% | |
| CATTAGCCGTGAACTGCTCA+TGG | + | chr1_2:5425411-5425430 | None:intergenic | 50.0% | |
| !! | CTTTTGCCGGTTGATTGGGA+GGG | + | chr1_2:5425451-5425470 | None:intergenic | 50.0% |
| !! | GGTCCTTTTGCCGGTTGATT+GGG | + | chr1_2:5425455-5425474 | None:intergenic | 50.0% |
| !! | TGGTCCTTTTGCCGGTTGAT+TGG | + | chr1_2:5425456-5425475 | None:intergenic | 50.0% |
| GACCAAGCAGCCTATTGATG+AGG | - | chr1_2:5425471-5425490 | Msa0051330:CDS | 50.0% | |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_2:5425507-5425526 | None:intergenic | 50.0% | |
| ACTCGGCGAAATGGATGAAC+TGG | + | chr1_2:5423708-5423727 | None:intergenic | 50.0% | |
| CATCCCGTTGAAATCGTGGA+TGG | + | chr1_2:5424125-5424144 | None:intergenic | 50.0% | |
| ATCTCAGCTCGGTACCTGAT+AGG | - | chr1_2:5424156-5424175 | Msa0051330:CDS | 50.0% | |
| TCTCAGCTCGGTACCTGATA+GGG | - | chr1_2:5424157-5424176 | Msa0051330:CDS | 50.0% | |
| GGGGATACTTGAACCCTATC+AGG | + | chr1_2:5424173-5424192 | None:intergenic | 50.0% | |
| TTCATGTCAAGGTGGGGATG+GGG | + | chr1_2:5424197-5424216 | None:intergenic | 50.0% | |
| GTTCATGTCAAGGTGGGGAT+GGG | + | chr1_2:5424198-5424217 | None:intergenic | 50.0% | |
| AGTTCATGTCAAGGTGGGGA+TGG | + | chr1_2:5424199-5424218 | None:intergenic | 50.0% | |
| TCCCCACCTTGACATGAACT+TGG | - | chr1_2:5424199-5424218 | Msa0051330:intron | 50.0% | |
| GGTCCAAGTTCATGTCAAGG+TGG | + | chr1_2:5424205-5424224 | None:intergenic | 50.0% | |
| TGCGGTCCAAGTTCATGTCA+AGG | + | chr1_2:5424208-5424227 | None:intergenic | 50.0% | |
| GACAGGATCGGGGATAGATT+CGG | - | chr1_2:5424413-5424432 | Msa0051330:intron | 50.0% | |
| ACAGGATCGGGGATAGATTC+GGG | - | chr1_2:5424414-5424433 | Msa0051330:intron | 50.0% | |
| TGGGTTTCCCCATCTAAGTC+GGG | - | chr1_2:5424515-5424534 | Msa0051330:intron | 50.0% | |
| ATGCAGTCACGAACATAGGC+AGG | - | chr1_2:5424877-5424896 | Msa0051330:intron | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5425082-5425101 | Msa0051330:intron | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | - | chr1_2:5425143-5425162 | Msa0051330:intron | 50.0% | |
| TGCTTCCCATGAGCAGTTCA+CGG | - | chr1_2:5425402-5425421 | Msa0051330:intron | 50.0% | |
| CATTAGCCGTGAACTGCTCA+TGG | + | chr1_2:5425411-5425430 | None:intergenic | 50.0% | |
| !! | CTTTTGCCGGTTGATTGGGA+GGG | + | chr1_2:5425451-5425470 | None:intergenic | 50.0% |
| !! | GGTCCTTTTGCCGGTTGATT+GGG | + | chr1_2:5425455-5425474 | None:intergenic | 50.0% |
| !! | TGGTCCTTTTGCCGGTTGAT+TGG | + | chr1_2:5425456-5425475 | None:intergenic | 50.0% |
| GACCAAGCAGCCTATTGATG+AGG | - | chr1_2:5425471-5425490 | Msa0051330:CDS | 50.0% | |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_2:5425507-5425526 | None:intergenic | 50.0% | |
| GAATAGGCATGGCAATGGGG+TGG | - | chr1_2:5424064-5424083 | Msa0051330:CDS | 55.0% | |
| GATCGGGGATAGATTCGGGA+TGG | - | chr1_2:5424418-5424437 | Msa0051330:intron | 55.0% | |
| AACATAGCACGGACGCGGAT+GGG | + | chr1_2:5424462-5424481 | None:intergenic | 55.0% | |
| AAACATAGCACGGACGCGGA+TGG | + | chr1_2:5424463-5424482 | None:intergenic | 55.0% | |
| GGGTTTCCCCATCTAAGTCG+GGG | - | chr1_2:5424516-5424535 | Msa0051330:intron | 55.0% | |
| TTTCCCCATCTAAGTCGGGG+CGG | - | chr1_2:5424519-5424538 | Msa0051330:intron | 55.0% | |
| AAACCCGCCCCGACTTAGAT+GGG | + | chr1_2:5424526-5424545 | None:intergenic | 55.0% | |
| TAAACCCGCCCCGACTTAGA+TGG | + | chr1_2:5424527-5424546 | None:intergenic | 55.0% | |
| GTGCTTCCCTCCCAATCAAC+CGG | - | chr1_2:5425442-5425461 | Msa0051330:intron | 55.0% | |
| !! | CCTTTTGCCGGTTGATTGGG+AGG | + | chr1_2:5425452-5425471 | None:intergenic | 55.0% |
| CCTCCCAATCAACCGGCAAA+AGG | - | chr1_2:5425449-5425468 | Msa0051330:intron | 55.0% | |
| ! | AGGCTGCTTGGTCCTTTTGC+CGG | + | chr1_2:5425464-5425483 | None:intergenic | 55.0% |
| CCTCGCTTCTTAGTCTGGAC+AGG | + | chr1_2:5425502-5425521 | None:intergenic | 55.0% | |
| CCTGTCCAGACTAAGAAGCG+AGG | - | chr1_2:5425499-5425518 | Msa0051330:CDS | 55.0% | |
| GAATAGGCATGGCAATGGGG+TGG | - | chr1_2:5424064-5424083 | Msa0051330:CDS | 55.0% | |
| GATCGGGGATAGATTCGGGA+TGG | - | chr1_2:5424418-5424437 | Msa0051330:intron | 55.0% | |
| AACATAGCACGGACGCGGAT+GGG | + | chr1_2:5424462-5424481 | None:intergenic | 55.0% | |
| AAACATAGCACGGACGCGGA+TGG | + | chr1_2:5424463-5424482 | None:intergenic | 55.0% | |
| GGGTTTCCCCATCTAAGTCG+GGG | - | chr1_2:5424516-5424535 | Msa0051330:intron | 55.0% | |
| TTTCCCCATCTAAGTCGGGG+CGG | - | chr1_2:5424519-5424538 | Msa0051330:intron | 55.0% | |
| AAACCCGCCCCGACTTAGAT+GGG | + | chr1_2:5424526-5424545 | None:intergenic | 55.0% | |
| TAAACCCGCCCCGACTTAGA+TGG | + | chr1_2:5424527-5424546 | None:intergenic | 55.0% | |
| GTGCTTCCCTCCCAATCAAC+CGG | - | chr1_2:5425442-5425461 | Msa0051330:intron | 55.0% | |
| !! | CCTTTTGCCGGTTGATTGGG+AGG | + | chr1_2:5425452-5425471 | None:intergenic | 55.0% |
| CCTCCCAATCAACCGGCAAA+AGG | - | chr1_2:5425449-5425468 | Msa0051330:intron | 55.0% | |
| ! | AGGCTGCTTGGTCCTTTTGC+CGG | + | chr1_2:5425464-5425483 | None:intergenic | 55.0% |
| CCTCGCTTCTTAGTCTGGAC+AGG | + | chr1_2:5425502-5425521 | None:intergenic | 55.0% | |
| CCTGTCCAGACTAAGAAGCG+AGG | - | chr1_2:5425499-5425518 | Msa0051330:CDS | 55.0% | |
| ATGTCAAGGTGGGGATGGGG+CGG | + | chr1_2:5424194-5424213 | None:intergenic | 60.0% | |
| ! | ACGGACGCGGATGGGTATTG+GGG | + | chr1_2:5424454-5424473 | None:intergenic | 60.0% |
| CACGGACGCGGATGGGTATT+GGG | + | chr1_2:5424455-5424474 | None:intergenic | 60.0% | |
| TTCCCCATCTAAGTCGGGGC+GGG | - | chr1_2:5424520-5424539 | Msa0051330:intron | 60.0% | |
| AACCCGCCCCGACTTAGATG+GGG | + | chr1_2:5424525-5424544 | None:intergenic | 60.0% | |
| ATGTCAAGGTGGGGATGGGG+CGG | + | chr1_2:5424194-5424213 | None:intergenic | 60.0% | |
| ! | ACGGACGCGGATGGGTATTG+GGG | + | chr1_2:5424454-5424473 | None:intergenic | 60.0% |
| CACGGACGCGGATGGGTATT+GGG | + | chr1_2:5424455-5424474 | None:intergenic | 60.0% | |
| TTCCCCATCTAAGTCGGGGC+GGG | - | chr1_2:5424520-5424539 | Msa0051330:intron | 60.0% | |
| AACCCGCCCCGACTTAGATG+GGG | + | chr1_2:5424525-5424544 | None:intergenic | 60.0% | |
| TGTCAAGGTGGGGATGGGGC+GGG | + | chr1_2:5424193-5424212 | None:intergenic | 65.0% | |
| GCACGGACGCGGATGGGTAT+TGG | + | chr1_2:5424456-5424475 | None:intergenic | 65.0% | |
| TGTCAAGGTGGGGATGGGGC+GGG | + | chr1_2:5424193-5424212 | None:intergenic | 65.0% | |
| GCACGGACGCGGATGGGTAT+TGG | + | chr1_2:5424456-5424475 | None:intergenic | 65.0% | |
| GTCAAGGTGGGGATGGGGCG+GGG | + | chr1_2:5424192-5424211 | None:intergenic | 70.0% | |
| GTCAAGGTGGGGATGGGGCG+GGG | + | chr1_2:5424192-5424211 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5423655 | 5425570 | 5423655 | ID=Msa0051330;Name=Msa0051330 |
| chr1_2 | mRNA | 5423655 | 5425570 | 5423655 | ID=Msa0051330-mRNA-1;Parent=Msa0051330;Name=Msa0051330-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|213 |
| chr1_2 | exon | 5425466 | 5425570 | 5425466 | ID=Msa0051330-mRNA-1:exon:1646;Parent=Msa0051330-mRNA-1 |
| chr1_2 | exon | 5423655 | 5424191 | 5423655 | ID=Msa0051330-mRNA-1:exon:1645;Parent=Msa0051330-mRNA-1 |
| chr1_2 | CDS | 5425466 | 5425570 | 5425466 | ID=Msa0051330-mRNA-1:cds;Parent=Msa0051330-mRNA-1 |
| chr1_2 | CDS | 5423655 | 5424191 | 5423655 | ID=Msa0051330-mRNA-1:cds;Parent=Msa0051330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
