Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051340 | XP_003589274.2 | 96.444 | 478 | 17 | 0 | 1 | 478 | 1 | 478 | 0.0 | 957 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051340 | sp|Q8RYD1|REM16_ARATH | 34.576 | 295 | 181 | 7 | 170 | 455 | 11 | 302 | 9.35e-49 | 173 |
| Msa0051340 | sp|Q8RYD1|REM16_ARATH | 44.737 | 152 | 76 | 3 | 12 | 156 | 11 | 161 | 4.78e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051340 | G7I4K8 | 96.444 | 478 | 17 | 0 | 1 | 478 | 1 | 478 | 0.0 | 957 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051340 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051340 | MtrunA17_Chr1g0154131 | 96.444 | 478 | 17 | 0 | 1 | 478 | 1 | 478 | 0.0 | 957 |
| Msa0051340 | MtrunA17_Chr1g0154071 | 59.302 | 516 | 132 | 9 | 5 | 472 | 4 | 489 | 0.0 | 571 |
| Msa0051340 | MtrunA17_Chr1g0154071 | 73.571 | 140 | 36 | 1 | 159 | 297 | 3 | 142 | 2.28e-63 | 213 |
| Msa0051340 | MtrunA17_Chr1g0154071 | 63.694 | 157 | 56 | 1 | 3 | 159 | 134 | 289 | 1.25e-58 | 201 |
| Msa0051340 | MtrunA17_Chr1g0154101 | 77.273 | 308 | 68 | 2 | 1 | 307 | 1 | 307 | 5.11e-170 | 500 |
| Msa0051340 | MtrunA17_Chr1g0154101 | 69.375 | 160 | 47 | 2 | 10 | 168 | 168 | 326 | 6.10e-65 | 224 |
| Msa0051340 | MtrunA17_Chr1g0154101 | 59.794 | 194 | 39 | 4 | 316 | 472 | 413 | 604 | 3.06e-63 | 219 |
| Msa0051340 | MtrunA17_Chr1g0154101 | 31.707 | 328 | 187 | 9 | 181 | 472 | 503 | 829 | 7.02e-37 | 144 |
| Msa0051340 | MtrunA17_Chr1g0154211 | 64.171 | 374 | 64 | 7 | 168 | 472 | 7 | 379 | 3.61e-160 | 459 |
| Msa0051340 | MtrunA17_Chr1g0154211 | 75.776 | 161 | 39 | 0 | 7 | 167 | 4 | 164 | 1.30e-82 | 261 |
| Msa0051340 | MtrunA17_Chr1g0154171 | 61.383 | 347 | 98 | 5 | 168 | 478 | 7 | 353 | 7.26e-142 | 411 |
| Msa0051340 | MtrunA17_Chr1g0154171 | 69.325 | 163 | 44 | 1 | 6 | 168 | 3 | 159 | 2.65e-70 | 228 |
| Msa0051340 | MtrunA17_Chr1g0154111 | 61.756 | 353 | 87 | 8 | 168 | 472 | 10 | 362 | 7.60e-142 | 419 |
| Msa0051340 | MtrunA17_Chr1g0154111 | 75.882 | 170 | 37 | 4 | 1 | 168 | 1 | 168 | 4.12e-80 | 260 |
| Msa0051340 | MtrunA17_Chr1g0154111 | 51.892 | 185 | 54 | 6 | 197 | 346 | 368 | 552 | 7.94e-44 | 162 |
| Msa0051340 | MtrunA17_Chr1g0154111 | 56.589 | 129 | 37 | 2 | 40 | 168 | 368 | 477 | 4.55e-34 | 135 |
| Msa0051340 | MtrunA17_Chr1g0154191 | 59.322 | 354 | 94 | 8 | 168 | 472 | 6 | 358 | 5.47e-135 | 394 |
| Msa0051340 | MtrunA17_Chr1g0154191 | 71.605 | 162 | 45 | 1 | 8 | 168 | 4 | 165 | 7.61e-74 | 237 |
| Msa0051340 | MtrunA17_Chr1g0154161 | 59.159 | 333 | 85 | 5 | 168 | 478 | 14 | 317 | 1.86e-130 | 380 |
| Msa0051340 | MtrunA17_Chr1g0154161 | 46.078 | 306 | 130 | 8 | 1 | 271 | 1 | 306 | 3.77e-73 | 234 |
| Msa0051340 | MtrunA17_Chr1g0154151 | 55.016 | 309 | 108 | 6 | 197 | 478 | 19 | 323 | 7.74e-106 | 318 |
| Msa0051340 | MtrunA17_Chr1g0154151 | 65.116 | 129 | 34 | 1 | 40 | 168 | 19 | 136 | 3.01e-49 | 171 |
| Msa0051340 | MtrunA17_Chr1g0154241 | 58.403 | 238 | 46 | 5 | 164 | 349 | 2 | 238 | 8.07e-82 | 254 |
| Msa0051340 | MtrunA17_Chr1g0154241 | 75.641 | 156 | 38 | 0 | 9 | 164 | 5 | 160 | 6.11e-81 | 252 |
| Msa0051340 | MtrunA17_Chr1g0154251 | 43.005 | 386 | 119 | 12 | 168 | 455 | 11 | 393 | 3.69e-80 | 258 |
| Msa0051340 | MtrunA17_Chr1g0154251 | 68.452 | 168 | 46 | 2 | 9 | 169 | 10 | 177 | 6.97e-70 | 231 |
| Msa0051340 | MtrunA17_Chr1g0154041 | 44.411 | 331 | 128 | 8 | 194 | 472 | 27 | 353 | 3.28e-75 | 247 |
| Msa0051340 | MtrunA17_Chr1g0154041 | 31.231 | 333 | 186 | 9 | 181 | 472 | 252 | 582 | 7.58e-36 | 140 |
| Msa0051340 | MtrunA17_Chr1g0154041 | 35.644 | 101 | 64 | 1 | 26 | 126 | 16 | 115 | 1.43e-13 | 73.2 |
| Msa0051340 | MtrunA17_Chr1g0154121 | 64.935 | 77 | 25 | 1 | 398 | 472 | 2 | 78 | 1.67e-27 | 105 |
| Msa0051340 | MtrunA17_Chr7g0233561 | 29.352 | 293 | 189 | 6 | 196 | 475 | 32 | 319 | 8.99e-27 | 110 |
| Msa0051340 | MtrunA17_Chr7g0233561 | 25.510 | 294 | 166 | 8 | 26 | 270 | 19 | 308 | 5.11e-17 | 82.0 |
| Msa0051340 | MtrunA17_Chr3g0131891 | 27.974 | 311 | 189 | 12 | 182 | 474 | 17 | 310 | 2.06e-24 | 103 |
| Msa0051340 | MtrunA17_Chr3g0131891 | 29.577 | 142 | 97 | 3 | 24 | 164 | 17 | 156 | 2.92e-12 | 67.8 |
| Msa0051340 | MtrunA17_Chr7g0233531 | 27.915 | 283 | 176 | 7 | 198 | 472 | 2 | 264 | 3.68e-23 | 99.0 |
| Msa0051340 | MtrunA17_Chr6g0464121 | 61.644 | 73 | 27 | 1 | 401 | 472 | 122 | 194 | 4.25e-22 | 97.1 |
| Msa0051340 | MtrunA17_Chr7g0233541 | 27.778 | 288 | 187 | 9 | 198 | 472 | 2 | 281 | 1.46e-21 | 94.7 |
| Msa0051340 | MtrunA17_Chr7g0233521 | 25.180 | 278 | 190 | 8 | 198 | 472 | 2 | 264 | 7.68e-20 | 89.4 |
| Msa0051340 | MtrunA17_Chr3g0103171 | 26.429 | 280 | 174 | 8 | 198 | 466 | 6 | 264 | 1.14e-19 | 88.6 |
| Msa0051340 | MtrunA17_Chr3g0103181 | 26.190 | 294 | 183 | 8 | 182 | 466 | 10 | 278 | 7.22e-19 | 86.7 |
| Msa0051340 | MtrunA17_Chr1g0208771 | 26.071 | 280 | 174 | 8 | 198 | 458 | 13 | 278 | 7.23e-19 | 89.0 |
| Msa0051340 | MtrunA17_Chr4g0067431 | 25.000 | 336 | 179 | 13 | 182 | 474 | 13 | 318 | 3.90e-17 | 82.4 |
| Msa0051340 | MtrunA17_Chr8g0390841 | 24.667 | 300 | 186 | 11 | 181 | 457 | 36 | 318 | 2.23e-16 | 81.6 |
| Msa0051340 | MtrunA17_Chr3g0077461 | 29.478 | 268 | 126 | 11 | 193 | 457 | 248 | 455 | 1.04e-15 | 79.3 |
| Msa0051340 | MtrunA17_Chr1g0163221 | 26.370 | 292 | 174 | 11 | 182 | 456 | 9 | 276 | 5.87e-15 | 76.3 |
| Msa0051340 | MtrunA17_Chr3g0077411 | 26.298 | 289 | 160 | 12 | 182 | 459 | 260 | 506 | 8.76e-15 | 76.6 |
| Msa0051340 | MtrunA17_Chr7g0233571 | 38.000 | 100 | 59 | 1 | 177 | 276 | 8 | 104 | 6.44e-14 | 70.9 |
| Msa0051340 | MtrunA17_Chr7g0233571 | 37.500 | 96 | 56 | 1 | 19 | 114 | 8 | 99 | 6.22e-11 | 62.4 |
| Msa0051340 | MtrunA17_Chr1g0163181 | 26.259 | 278 | 179 | 10 | 193 | 457 | 16 | 280 | 2.64e-12 | 68.6 |
| Msa0051340 | MtrunA17_Chr5g0419201 | 31.579 | 114 | 75 | 1 | 193 | 306 | 27 | 137 | 5.23e-12 | 64.7 |
| Msa0051340 | MtrunA17_Chr3g0103201 | 25.820 | 244 | 136 | 10 | 240 | 466 | 4 | 219 | 1.07e-11 | 64.3 |
| Msa0051340 | MtrunA17_Chr1g0162441 | 39.241 | 79 | 48 | 0 | 194 | 272 | 19 | 97 | 6.07e-11 | 64.3 |
| Msa0051340 | MtrunA17_Chr4g0033961 | 39.744 | 78 | 47 | 0 | 194 | 271 | 18 | 95 | 8.87e-11 | 63.9 |
| Msa0051340 | MtrunA17_Chr3g0103151 | 31.731 | 104 | 64 | 1 | 182 | 278 | 10 | 113 | 9.93e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051340 | AT4G33280.1 | 34.576 | 295 | 181 | 7 | 170 | 455 | 11 | 302 | 9.50e-50 | 173 |
| Msa0051340 | AT4G33280.1 | 44.737 | 152 | 76 | 3 | 12 | 156 | 11 | 161 | 4.86e-35 | 134 |
| Msa0051340 | AT4G33280.2 | 47.561 | 164 | 85 | 1 | 170 | 332 | 11 | 174 | 1.66e-46 | 163 |
| Msa0051340 | AT4G33280.2 | 49.612 | 129 | 63 | 2 | 12 | 139 | 11 | 138 | 2.01e-35 | 133 |
| Msa0051340 | AT4G33280.3 | 47.561 | 164 | 85 | 1 | 170 | 332 | 11 | 174 | 5.06e-45 | 162 |
| Msa0051340 | AT4G33280.3 | 49.612 | 129 | 63 | 2 | 12 | 139 | 11 | 138 | 1.32e-34 | 134 |
| Msa0051340 | AT3G18990.1 | 25.688 | 327 | 187 | 11 | 181 | 458 | 5 | 324 | 3.35e-17 | 83.2 |
| Msa0051340 | AT3G18990.1 | 37.209 | 86 | 54 | 0 | 30 | 115 | 11 | 96 | 2.52e-12 | 68.6 |
| Msa0051340 | AT3G18990.2 | 25.146 | 342 | 200 | 11 | 181 | 473 | 5 | 339 | 3.69e-17 | 83.6 |
| Msa0051340 | AT3G18990.2 | 37.209 | 86 | 54 | 0 | 30 | 115 | 11 | 96 | 3.08e-12 | 68.6 |
| Msa0051340 | AT4G34400.2 | 35.000 | 100 | 62 | 2 | 26 | 124 | 17 | 114 | 1.79e-16 | 81.6 |
| Msa0051340 | AT4G34400.2 | 34.694 | 98 | 64 | 0 | 184 | 281 | 17 | 114 | 3.39e-16 | 80.9 |
| Msa0051340 | AT4G34400.1 | 35.000 | 100 | 62 | 2 | 26 | 124 | 17 | 114 | 1.79e-16 | 81.6 |
| Msa0051340 | AT4G34400.1 | 34.694 | 98 | 64 | 0 | 184 | 281 | 17 | 114 | 3.39e-16 | 80.9 |
| Msa0051340 | AT5G18000.2 | 24.335 | 263 | 181 | 7 | 214 | 468 | 19 | 271 | 6.22e-15 | 75.5 |
| Msa0051340 | AT5G18090.1 | 23.411 | 299 | 200 | 11 | 184 | 468 | 18 | 301 | 1.06e-14 | 75.1 |
| Msa0051340 | AT5G18000.1 | 24.335 | 263 | 181 | 7 | 214 | 468 | 54 | 306 | 1.13e-14 | 75.1 |
| Msa0051340 | AT5G66980.1 | 25.497 | 302 | 184 | 10 | 184 | 457 | 11 | 299 | 3.13e-14 | 74.3 |
| Msa0051340 | AT5G66980.1 | 24.150 | 294 | 160 | 7 | 37 | 270 | 21 | 311 | 1.46e-11 | 66.2 |
| Msa0051340 | AT3G06220.1 | 25.478 | 157 | 113 | 1 | 184 | 340 | 11 | 163 | 9.11e-14 | 69.7 |
| Msa0051340 | AT3G06220.1 | 30.928 | 97 | 65 | 2 | 26 | 122 | 11 | 105 | 1.43e-12 | 66.2 |
| Msa0051340 | AT3G06160.1 | 27.857 | 140 | 92 | 3 | 184 | 322 | 26 | 157 | 3.18e-13 | 71.2 |
| Msa0051340 | AT3G06160.1 | 27.737 | 137 | 87 | 3 | 26 | 162 | 26 | 150 | 3.02e-11 | 65.1 |
| Msa0051340 | AT3G06160.5 | 27.857 | 140 | 92 | 3 | 184 | 322 | 11 | 142 | 3.44e-13 | 70.9 |
| Msa0051340 | AT3G06160.5 | 27.737 | 137 | 87 | 3 | 26 | 162 | 11 | 135 | 3.19e-11 | 64.7 |
| Msa0051340 | AT3G06160.4 | 27.857 | 140 | 92 | 3 | 184 | 322 | 11 | 142 | 3.44e-13 | 70.9 |
| Msa0051340 | AT3G06160.4 | 27.737 | 137 | 87 | 3 | 26 | 162 | 11 | 135 | 3.19e-11 | 64.7 |
| Msa0051340 | AT3G06160.3 | 27.857 | 140 | 92 | 3 | 184 | 322 | 11 | 142 | 3.44e-13 | 70.9 |
| Msa0051340 | AT3G06160.3 | 27.737 | 137 | 87 | 3 | 26 | 162 | 11 | 135 | 3.19e-11 | 64.7 |
| Msa0051340 | AT3G06160.2 | 27.857 | 140 | 92 | 3 | 184 | 322 | 70 | 201 | 5.46e-13 | 70.9 |
| Msa0051340 | AT3G06160.2 | 27.737 | 137 | 87 | 3 | 26 | 162 | 70 | 194 | 4.40e-11 | 65.1 |
| Msa0051340 | AT3G53310.1 | 35.955 | 89 | 57 | 0 | 184 | 272 | 12 | 100 | 1.74e-12 | 68.2 |
| Msa0051340 | AT3G53310.1 | 32.609 | 92 | 62 | 0 | 23 | 114 | 8 | 99 | 6.69e-11 | 63.5 |
| Msa0051340 | AT5G60130.5 | 36.634 | 101 | 59 | 2 | 184 | 279 | 15 | 115 | 3.60e-12 | 66.6 |
| Msa0051340 | AT5G60140.1 | 32.407 | 108 | 70 | 1 | 175 | 279 | 7 | 114 | 4.41e-12 | 67.8 |
| Msa0051340 | AT5G60130.2 | 36.634 | 101 | 59 | 2 | 184 | 279 | 15 | 115 | 1.03e-11 | 66.2 |
| Msa0051340 | AT5G60130.4 | 36.634 | 101 | 59 | 2 | 184 | 279 | 12 | 112 | 1.06e-11 | 66.2 |
| Msa0051340 | AT5G60130.1 | 36.634 | 101 | 59 | 2 | 184 | 279 | 15 | 115 | 1.09e-11 | 66.2 |
| Msa0051340 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 196 | 279 | 1 | 89 | 1.73e-11 | 65.5 |
| Msa0051340 | AT2G16210.1 | 25.338 | 296 | 189 | 11 | 181 | 468 | 19 | 290 | 4.47e-11 | 64.3 |
Find 102 sgRNAs with CRISPR-Local
Find 410 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_2:+5436822 | None:intergenic |
| CAACTCCGCTAGGACCTTTA+AGG | 0.180866 | 1_2:+5435699 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5435713 | Msa0051340:CDS |
| CCAGCAAATGTGACCCTTAA+AGG | 0.268883 | 1_2:-5436836 | Msa0051340:CDS |
| TCACAAGAGTTACCTGCTTT+TGG | 0.287075 | 1_2:+5435311 | None:intergenic |
| TGTTTCCCCTGAGCAGTTCA+TGG | 0.291888 | 1_2:-5435426 | Msa0051340:CDS |
| CCTTTAAGGGTCACATTTGC+TGG | 0.308416 | 1_2:+5436836 | None:intergenic |
| TGTCGATGGTCCACGTATTC+TGG | 0.310730 | 1_2:-5433110 | Msa0051340:intron |
| CTTGGGAGGAAGACATTTAC+TGG | 0.335828 | 1_2:-5438211 | Msa0051340:CDS |
| AGTGGAGTTGTGTGGGATAT+AGG | 0.336475 | 1_2:-5436809 | Msa0051340:CDS |
| ATTGAGTGAAATGGATGAAT+TGG | 0.340442 | 1_2:+5436459 | None:intergenic |
| GTCGTCTTCCTCGCTTAGTC+TGG | 0.342526 | 1_2:+5435333 | None:intergenic |
| CATGGGAGGAAGACATTTAC+TGG | 0.353390 | 1_2:-5436490 | Msa0051340:CDS |
| AGCGGAGTTGTGTGGAATAT+AGG | 0.358402 | 1_2:-5435686 | Msa0051340:CDS |
| ATTTCTTCAAACCACCCATT+TGG | 0.379142 | 1_2:-5438159 | Msa0051340:CDS |
| AAGTTGGAAAAGATGATTCT+AGG | 0.381631 | 1_2:-5432160 | Msa0051340:CDS |
| ATTGAGTGAAACGGATGAAC+TGG | 0.387722 | 1_2:+5438180 | None:intergenic |
| GCGGAGTTGTGTGGAATATA+GGG | 0.388697 | 1_2:-5435685 | Msa0051340:CDS |
| ATAATCTTTATCTTGCGGTT+TGG | 0.389622 | 1_2:+5432362 | None:intergenic |
| TTACAAGTTGTTGTTCCAAA+TGG | 0.406373 | 1_2:+5438144 | None:intergenic |
| CATTCAACACTGCCATTAGA+AGG | 0.411659 | 1_2:+5436530 | None:intergenic |
| GAAGATGTGCCTTTGAGAAT+TGG | 0.415199 | 1_2:+5432384 | None:intergenic |
| ATAGGCGTAACTTCATTAAC+AGG | 0.425586 | 1_2:+5435356 | None:intergenic |
| CGTGTTCACGTCGCTGAAGT+TGG | 0.425931 | 1_2:-5432176 | Msa0051340:CDS |
| TGAAATGGATGAATTGGAAA+TGG | 0.428312 | 1_2:+5436465 | None:intergenic |
| GTGGAGTTGTGTGGGATATA+GGG | 0.433125 | 1_2:-5436808 | Msa0051340:CDS |
| AACAAGTTGCTGTTCAAAAT+CGG | 0.433766 | 1_2:+5436427 | None:intergenic |
| GAAGTCAATACTCCTTCTAA+TGG | 0.437631 | 1_2:-5436542 | Msa0051340:CDS |
| GAACGTGGACAAGCTCATAC+TGG | 0.454625 | 1_2:-5436608 | Msa0051340:CDS |
| TACAAGTTGTTGTTCCAAAT+GGG | 0.455785 | 1_2:+5438145 | None:intergenic |
| CACAAAACAGCAGCAGGTCT+TGG | 0.458108 | 1_2:-5438229 | Msa0051340:CDS |
| TTTAACAAAATAAGGAAAAG+AGG | 0.464646 | 1_2:+5433150 | None:intergenic |
| GCATCAGCCATGAACTGCTC+AGG | 0.467203 | 1_2:+5435419 | None:intergenic |
| CCTCCCAAACAAACGGCAAA+AGG | 0.468139 | 1_2:-5435391 | Msa0051340:CDS |
| CAATGGTGAATCACTGTTTG+AGG | 0.469927 | 1_2:-5436687 | Msa0051340:CDS |
| AAAAGAGGAGGTAAATGATT+CGG | 0.471467 | 1_2:+5433165 | None:intergenic |
| TGAAACGGATGAACTGGAAA+TGG | 0.476169 | 1_2:+5438186 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_2:+5436823 | None:intergenic |
| CAACGGTAAATCACTCTTTG+AGG | 0.482140 | 1_2:-5435564 | Msa0051340:CDS |
| ACAAAACAGCAGCAGGTCTT+GGG | 0.491871 | 1_2:-5438228 | Msa0051340:CDS |
| TGCGAAGAAATTGAGTGAAA+TGG | 0.494583 | 1_2:+5436450 | None:intergenic |
| AACTCCGCTAGGACCTTTAA+GGG | 0.499430 | 1_2:+5435700 | None:intergenic |
| GATTATTCTTCATAATTTGA+AGG | 0.504582 | 1_2:-5432345 | Msa0051340:CDS |
| ATTATTCTTCATAATTTGAA+GGG | 0.512712 | 1_2:-5432344 | Msa0051340:CDS |
| CTGTTTACTTCGTGGATGGT+TGG | 0.514360 | 1_2:-5435643 | Msa0051340:CDS |
| CACCATTGTACTTGAAGACA+AGG | 0.518563 | 1_2:+5436702 | None:intergenic |
| TGGAAAAGATGATTCTAGGC+TGG | 0.522012 | 1_2:-5432156 | Msa0051340:CDS |
| CGTGGCAACAACATAAAAGT+TGG | 0.523605 | 1_2:-5432239 | Msa0051340:CDS |
| GAAACGGATGAACTGGAAAT+GGG | 0.528881 | 1_2:+5438187 | None:intergenic |
| GAAGAATAATCTTTATCTTG+CGG | 0.531188 | 1_2:+5432357 | None:intergenic |
| ATCACACTCTATGTGGAGGA+TGG | 0.534155 | 1_2:-5432274 | Msa0051340:CDS |
| GCGGTTCCCTCCCAAACAAA+CGG | 0.536582 | 1_2:-5435398 | Msa0051340:CDS |
| GGGAATGCTCAAACCGAACA+AGG | 0.539691 | 1_2:-5435479 | Msa0051340:CDS |
| TCTGTATTCACTCTAGTCGT+TGG | 0.546802 | 1_2:+5432296 | None:intergenic |
| TTCCTTGTCTTCAAGTACAA+TGG | 0.547188 | 1_2:-5436704 | Msa0051340:CDS |
| TGGAGATAGTTTCTGTGAGA+AGG | 0.547709 | 1_2:-5435528 | Msa0051340:CDS |
| AGATGGTACTGTTTACTTCG+TGG | 0.548734 | 1_2:-5435651 | Msa0051340:CDS |
| GAAGAACACAAAACAGCAGC+AGG | 0.549527 | 1_2:-5438235 | Msa0051340:CDS |
| GATACAATTTACTCCACGAC+TGG | 0.555502 | 1_2:-5436770 | Msa0051340:CDS |
| ATATCCCACACAACTCCACT+AGG | 0.558401 | 1_2:+5436812 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.558725 | 1_2:-5436817 | Msa0051340:CDS |
| GAAATGGATGAATTGGAAAT+GGG | 0.558788 | 1_2:+5436466 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+CGG | 0.560047 | 1_2:-5435581 | Msa0051340:CDS |
| TTTGAAGAAATTGAGTGAAA+CGG | 0.560139 | 1_2:+5438171 | None:intergenic |
| CTTCCTCGCTTAGTCTGGAT+AGG | 0.562751 | 1_2:+5435338 | None:intergenic |
| ATCAAAACGTTCAATGTCGA+TGG | 0.563766 | 1_2:-5433124 | Msa0051340:CDS |
| CGAGGAAGACGACCAAAAGC+AGG | 0.564365 | 1_2:-5435323 | Msa0051340:intron |
| ATAATTTGAAGGGAGAACAA+TGG | 0.564369 | 1_2:-5432334 | Msa0051340:CDS |
| CATCAGCCATGAACTGCTCA+GGG | 0.564547 | 1_2:+5435420 | None:intergenic |
| TACCGTTGTACTTAAAGACA+AGG | 0.571756 | 1_2:+5435579 | None:intergenic |
| GAATTGTTGCCAACCAGTCG+TGG | 0.574062 | 1_2:+5436757 | None:intergenic |
| GATGTGCCTTTGAGAATTGG+TGG | 0.577072 | 1_2:+5432387 | None:intergenic |
| TCACACTCTATGTGGAGGAT+GGG | 0.578428 | 1_2:-5432273 | Msa0051340:CDS |
| ATATTCCACACAACTCCGCT+AGG | 0.581486 | 1_2:+5435689 | None:intergenic |
| AAGTTGTTGTTCCAAATGGG+TGG | 0.583718 | 1_2:+5438148 | None:intergenic |
| GGACAAGCTCATACTGGACA+AGG | 0.588782 | 1_2:-5436602 | Msa0051340:CDS |
| AGGTCCTAGTGGAGTTGTGT+GGG | 0.591978 | 1_2:-5436816 | Msa0051340:CDS |
| GGTACTGTTTACTTCGTGGA+TGG | 0.593016 | 1_2:-5435647 | Msa0051340:CDS |
| CAATTTACTCCACGACTGGT+TGG | 0.594880 | 1_2:-5436766 | Msa0051340:CDS |
| AAGGTCCTAGCGGAGTTGTG+TGG | 0.597202 | 1_2:-5435694 | Msa0051340:CDS |
| AATACAGATCACACTCTATG+TGG | 0.602462 | 1_2:-5432281 | Msa0051340:CDS |
| AACAAAATAAGGAAAAGAGG+AGG | 0.617290 | 1_2:+5433153 | None:intergenic |
| ATGTGCCTTTGAGAATTGGT+GGG | 0.621597 | 1_2:+5432388 | None:intergenic |
| GGAATGCTCAAACCGAACAA+GGG | 0.628948 | 1_2:-5435478 | Msa0051340:CDS |
| TGAGCAGTTCATGGCTGATG+CGG | 0.629723 | 1_2:-5435417 | Msa0051340:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5436827 | Msa0051340:CDS |
| ATAGGGCTGACAACTAGAGA+TGG | 0.634257 | 1_2:-5435668 | Msa0051340:CDS |
| ACAAGCTCATACTGGACAAG+GGG | 0.635406 | 1_2:-5436600 | Msa0051340:CDS |
| TCTAATGGCAGTGTTGAATG+CGG | 0.636629 | 1_2:-5436527 | Msa0051340:CDS |
| AAACAGCAGCAGGTCTTGGG+AGG | 0.639430 | 1_2:-5438225 | Msa0051340:CDS |
| ACGGCAAAAGGATCAAGAAG+AGG | 0.646902 | 1_2:-5435379 | Msa0051340:CDS |
| GAATGCTCAAACCGAACAAG+GGG | 0.647827 | 1_2:-5435477 | Msa0051340:CDS |
| ACTGTGTTAATTCAAATGGG+AGG | 0.654200 | 1_2:-5438257 | None:intergenic |
| ACGCCTATCCAGACTAAGCG+AGG | 0.657487 | 1_2:-5435341 | Msa0051340:CDS |
| GACAAGCTCATACTGGACAA+GGG | 0.658627 | 1_2:-5436601 | Msa0051340:CDS |
| ACAGATCACACTCTATGTGG+AGG | 0.665620 | 1_2:-5432278 | Msa0051340:CDS |
| TGTACCCCACCAATTCTCAA+AGG | 0.668923 | 1_2:-5432393 | Msa0051340:CDS |
| TGTGCCTTTGAGAATTGGTG+GGG | 0.697237 | 1_2:+5432389 | None:intergenic |
| GTGACCCTTAAAGGTCCTAG+CGG | 0.711967 | 1_2:-5435704 | Msa0051340:CDS |
| ATCAGCCATGAACTGCTCAG+GGG | 0.743763 | 1_2:+5435421 | None:intergenic |
| AATGCTCAAACCGAACAAGG+GGG | 0.785077 | 1_2:-5435476 | Msa0051340:CDS |
| CAAGCTCATACTGGACAAGG+GGG | 0.788059 | 1_2:-5436599 | Msa0051340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAAAATAATAAAGAAAA+AGG | + | chr1_2:5434143-5434162 | None:intergenic | 10.0% |
| !!! | GAAATTTATATTTTAATTGT+AGG | - | chr1_2:5434613-5434632 | Msa0051340:intron | 10.0% |
| !! | TATTAAATAGTAAAAGTTAA+TGG | + | chr1_2:5435166-5435185 | None:intergenic | 10.0% |
| !! | TTAAATAAAATAATAAGCTT+TGG | + | chr1_2:5437125-5437144 | None:intergenic | 10.0% |
| !! | AGATAGATACAAAATTTAAA+AGG | + | chr1_2:5434172-5434191 | None:intergenic | 15.0% |
| !! | AAAGAATTAACTAAAGTTAA+AGG | + | chr1_2:5434201-5434220 | None:intergenic | 15.0% |
| !! | ATTGATTAAAGGAAATTAAA+AGG | - | chr1_2:5434360-5434379 | Msa0051340:intron | 15.0% |
| !!! | CAAATTTCATTTGTAATTTT+AGG | - | chr1_2:5435926-5435945 | Msa0051340:intron | 15.0% |
| !!! | TTGATCATTTTAACAAAATA+AGG | + | chr1_2:5437251-5437270 | None:intergenic | 15.0% |
| !! | AAAATAGGAAATATTAAAGA+AGG | + | chr1_2:5437866-5437885 | None:intergenic | 15.0% |
| !!! | ATTTCCTATTTTAAGTTTAT+TGG | - | chr1_2:5437874-5437893 | Msa0051340:intron | 15.0% |
| !! | ATTATTCTTCATAATTTGAA+GGG | - | chr1_2:5438046-5438065 | Msa0051340:intron | 15.0% |
| !!! | AATATGAAAACTTTAGAACA+TGG | + | chr1_2:5432294-5432313 | None:intergenic | 20.0% |
| !!! | TGTTCTAAAGTTTTCATATT+TGG | - | chr1_2:5432294-5432313 | Msa0051340:CDS | 20.0% |
| !!! | GTTCTAAAGTTTTCATATTT+GGG | - | chr1_2:5432295-5432314 | Msa0051340:CDS | 20.0% |
| !! | GATGCAAAATTAAAAAAAGT+GGG | + | chr1_2:5432407-5432426 | None:intergenic | 20.0% |
| !! | AGATGCAAAATTAAAAAAAG+TGG | + | chr1_2:5432408-5432427 | None:intergenic | 20.0% |
| !! | AATAAATTATTCTCAATTGC+AGG | + | chr1_2:5432941-5432960 | None:intergenic | 20.0% |
| !! | TGCAATTGAGAATAATTTAT+TGG | - | chr1_2:5432940-5432959 | Msa0051340:intron | 20.0% |
| !! | ATCAAGCAAATAATTATGTT+TGG | - | chr1_2:5433396-5433415 | Msa0051340:intron | 20.0% |
| !!! | GAAATTTATACTTTTATTGC+AGG | - | chr1_2:5433490-5433509 | Msa0051340:intron | 20.0% |
| !!! | TTTCTAAAGTGTTCATATTT+GGG | - | chr1_2:5434066-5434085 | Msa0051340:intron | 20.0% |
| !! | AGATACAAAATTTAAAAGGT+GGG | + | chr1_2:5434168-5434187 | None:intergenic | 20.0% |
| !! | TAGATACAAAATTTAAAAGG+TGG | + | chr1_2:5434169-5434188 | None:intergenic | 20.0% |
| !! | ATTAACTAAAGTTAAAGGAA+TGG | + | chr1_2:5434196-5434215 | None:intergenic | 20.0% |
| !!! | TTGTGCTTGTTTTTAAATAA+TGG | - | chr1_2:5434241-5434260 | Msa0051340:intron | 20.0% |
| !!! | TTGTTTTTAAATAATGGCTT+AGG | - | chr1_2:5434247-5434266 | Msa0051340:intron | 20.0% |
| !! | CATTTAAGTAGATTGATTAA+AGG | - | chr1_2:5434349-5434368 | Msa0051340:intron | 20.0% |
| !! | AAATTAAAAGGAAGTGAATA+AGG | - | chr1_2:5434372-5434391 | Msa0051340:intron | 20.0% |
| !!! | AAATAATTATGTTTAGCTCT+TGG | - | chr1_2:5434422-5434441 | Msa0051340:intron | 20.0% |
| !!! | AATAATTATGTTTAGCTCTT+GGG | - | chr1_2:5434423-5434442 | Msa0051340:intron | 20.0% |
| !! | ATTAGATGTTCTTATCAATT+GGG | + | chr1_2:5435388-5435407 | None:intergenic | 20.0% |
| !!! | TTCTTTTGTCATTTGATATA+TGG | - | chr1_2:5435519-5435538 | Msa0051340:CDS | 20.0% |
| !!! | TCACATGTTTTTACTTAAAA+AGG | - | chr1_2:5435602-5435621 | Msa0051340:CDS | 20.0% |
| !! | TTTCCTTTAATAAATGTGAT+AGG | - | chr1_2:5436211-5436230 | Msa0051340:intron | 20.0% |
| !!! | TCTATTTTACAATTTCTACT+GGG | + | chr1_2:5436786-5436805 | None:intergenic | 20.0% |
| !!! | TTCTATTTTACAATTTCTAC+TGG | + | chr1_2:5436787-5436806 | None:intergenic | 20.0% |
| !!! | AATTGCCTTTGATTTTATTT+TGG | - | chr1_2:5437003-5437022 | Msa0051340:intron | 20.0% |
| !!! | ATTGCCTTTGATTTTATTTT+GGG | - | chr1_2:5437004-5437023 | Msa0051340:intron | 20.0% |
| !! | TTTAACAAAATAAGGAAAAG+AGG | + | chr1_2:5437243-5437262 | None:intergenic | 20.0% |
| !! | GAAAATTATGAATTACAGAA+GGG | + | chr1_2:5437315-5437334 | None:intergenic | 20.0% |
| !! | GATTATTCTTCATAATTTGA+AGG | - | chr1_2:5438045-5438064 | Msa0051340:intron | 20.0% |
| ! | TTTGAAGAAATTGAGTGAAA+CGG | + | chr1_2:5432222-5432241 | None:intergenic | 25.0% |
| !! | AGATTTGAGCTTTTCATTTT+TGG | - | chr1_2:5432468-5432487 | Msa0051340:intron | 25.0% |
| ! | CTCTTTATCTTGTATGTATT+TGG | - | chr1_2:5433163-5433182 | Msa0051340:CDS | 25.0% |
| !!! | AATAATTATGTTTGGCTCTT+AGG | - | chr1_2:5433404-5433423 | Msa0051340:intron | 25.0% |
| !! | AAATTGTCTGAGAATGTTTT+AGG | + | chr1_2:5433521-5433540 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTCA+TGG | - | chr1_2:5433719-5433738 | Msa0051340:intron | 25.0% |
| !!! | TCTTATTTTATTCTTGAACG+TGG | - | chr1_2:5433767-5433786 | Msa0051340:intron | 25.0% |
| ! | AAAAAGGAAACAAGAATGAA+GGG | + | chr1_2:5433995-5434014 | None:intergenic | 25.0% |
| ! | AAAGCAAGAAAAAGAGAAAA+AGG | + | chr1_2:5434011-5434030 | None:intergenic | 25.0% |
| !! | CAAATATGAACACTTTAGAA+AGG | + | chr1_2:5434067-5434086 | None:intergenic | 25.0% |
| !!! | CTTTCTAAAGTGTTCATATT+TGG | - | chr1_2:5434065-5434084 | Msa0051340:intron | 25.0% |
| ! | ATAAATAGTGTTTGCAGAAT+CGG | + | chr1_2:5434463-5434482 | None:intergenic | 25.0% |
| ! | TATATTCTACCAATATCTCT+TGG | - | chr1_2:5434555-5434574 | Msa0051340:intron | 25.0% |
| ! | ATATTCTACCAATATCTCTT+GGG | - | chr1_2:5434556-5434575 | Msa0051340:intron | 25.0% |
| !! | ATGTATCTTTTAATCTCAGA+CGG | - | chr1_2:5434591-5434610 | Msa0051340:intron | 25.0% |
| !! | AAATTGTCTGAGAATGTTTT+AGG | + | chr1_2:5433521-5433540 | None:intergenic | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_2:5434842-5434861 | Msa0051340:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | - | chr1_2:5434890-5434909 | Msa0051340:intron | 25.0% |
| !!! | CTTATTTTGTTGGAAAATGT+GGG | - | chr1_2:5434891-5434910 | Msa0051340:intron | 25.0% |
| !!! | GTTTTTTCCCCTTTTTATAA+TGG | - | chr1_2:5435294-5435313 | Msa0051340:intron | 25.0% |
| ! | ACTTAGGACCATTATAAAAA+GGG | + | chr1_2:5435305-5435324 | None:intergenic | 25.0% |
| ! | CATTAGATGTTCTTATCAAT+TGG | + | chr1_2:5435389-5435408 | None:intergenic | 25.0% |
| ! | ATACAACTTTGACAAAAAAG+TGG | + | chr1_2:5435487-5435506 | None:intergenic | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | + | chr1_2:5435516-5435535 | None:intergenic | 25.0% |
| ! | GAAGTTCATATATAATGTGT+CGG | - | chr1_2:5435562-5435581 | Msa0051340:CDS | 25.0% |
| !! | AAGTATGGAGATTTTATGTA+AGG | - | chr1_2:5435694-5435713 | Msa0051340:CDS | 25.0% |
| ! | TAAGAATTAGTTGGGTAATT+TGG | - | chr1_2:5435763-5435782 | Msa0051340:intron | 25.0% |
| ! | AAGAATTAGTTGGGTAATTT+GGG | - | chr1_2:5435764-5435783 | Msa0051340:intron | 25.0% |
| ! | AAAAATAAAGCTTGAGATGA+AGG | + | chr1_2:5436194-5436213 | None:intergenic | 25.0% |
| !!! | GTTTTTAAGTCTCTATCAAT+TGG | + | chr1_2:5436652-5436671 | None:intergenic | 25.0% |
| ! | AATTGCAATATTGTTCAAGA+AGG | - | chr1_2:5436840-5436859 | Msa0051340:CDS | 25.0% |
| !!! | GTTGATGATATTATGATTAC+AGG | + | chr1_2:5436894-5436913 | None:intergenic | 25.0% |
| ! | TAGACCCAAAATAAAATCAA+AGG | + | chr1_2:5437011-5437030 | None:intergenic | 25.0% |
| !! | TAAGCTTTGGCATAAATATA+AGG | + | chr1_2:5437112-5437131 | None:intergenic | 25.0% |
| ! | GGAAAATTATGAATTACAGA+AGG | + | chr1_2:5437316-5437335 | None:intergenic | 25.0% |
| ! | ATAAAACAACATTATTTGGG+AGG | + | chr1_2:5437337-5437356 | None:intergenic | 25.0% |
| ! | GGGATAAAACAACATTATTT+GGG | + | chr1_2:5437340-5437359 | None:intergenic | 25.0% |
| ! | AGGGATAAAACAACATTATT+TGG | + | chr1_2:5437341-5437360 | None:intergenic | 25.0% |
| ! | GACAAGATAACAATAACAAT+TGG | + | chr1_2:5437792-5437811 | None:intergenic | 25.0% |
| ! | ACGACCAATAAACTTAAAAT+AGG | + | chr1_2:5437881-5437900 | None:intergenic | 25.0% |
| ! | GAAGAATAATCTTTATCTTG+CGG | + | chr1_2:5438036-5438055 | None:intergenic | 25.0% |
| ! | TACAAGTTGTTGTTCCAAAT+GGG | + | chr1_2:5432248-5432267 | None:intergenic | 30.0% |
| ! | TTACAAGTTGTTGTTCCAAA+TGG | + | chr1_2:5432249-5432268 | None:intergenic | 30.0% |
| GCAAAAGAATCATGCTTAAA+AGG | - | chr1_2:5432551-5432570 | Msa0051340:intron | 30.0% | |
| TGCTTAAAAGGAAAAAGACA+AGG | - | chr1_2:5432563-5432582 | Msa0051340:intron | 30.0% | |
| AAAAGACAAGGAAGTGAAAA+AGG | - | chr1_2:5432575-5432594 | Msa0051340:intron | 30.0% | |
| AAAAAGGAGATTGTAGTTGA+AGG | - | chr1_2:5432591-5432610 | Msa0051340:intron | 30.0% | |
| AAAAGGAGATTGTAGTTGAA+GGG | - | chr1_2:5432592-5432611 | Msa0051340:intron | 30.0% | |
| ! | TACATAAGTTTTGCAGAACA+AGG | + | chr1_2:5432640-5432659 | None:intergenic | 30.0% |
| CTAAGATTGTTTACCTAGTT+CGG | + | chr1_2:5433125-5433144 | None:intergenic | 30.0% | |
| ATACAAGATAAAGAGAGAAG+AGG | + | chr1_2:5433158-5433177 | None:intergenic | 30.0% | |
| !!! | TTTCGATTTTTAGTACCCAT+AGG | - | chr1_2:5433194-5433213 | Msa0051340:CDS | 30.0% |
| !!! | TTCGATTTTTAGTACCCATA+GGG | - | chr1_2:5433195-5433214 | Msa0051340:CDS | 30.0% |
| CAATGTTTCATAGTCTCAAA+TGG | - | chr1_2:5433468-5433487 | Msa0051340:intron | 30.0% | |
| GAAATGGATGAATTGGAAAT+GGG | + | chr1_2:5433927-5433946 | None:intergenic | 30.0% | |
| TGAAATGGATGAATTGGAAA+TGG | + | chr1_2:5433928-5433947 | None:intergenic | 30.0% | |
| ATTGAGTGAAATGGATGAAT+TGG | + | chr1_2:5433934-5433953 | None:intergenic | 30.0% | |
| ! | AACAAGTTGCTGTTCAAAAT+CGG | + | chr1_2:5433966-5433985 | None:intergenic | 30.0% |
| GAAAAAGGAAACAAGAATGA+AGG | + | chr1_2:5433996-5434015 | None:intergenic | 30.0% | |
| TCTACTTAAATGTAGATGCA+TGG | + | chr1_2:5434341-5434360 | None:intergenic | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+CGG | - | chr1_2:5434809-5434828 | Msa0051340:intron | 30.0% | |
| CTTAGGACCATTATAAAAAG+GGG | + | chr1_2:5435304-5435323 | None:intergenic | 30.0% | |
| CACTTAGGACCATTATAAAA+AGG | + | chr1_2:5435306-5435325 | None:intergenic | 30.0% | |
| ! | TTTTATAATGGTCCTAAGTG+TGG | - | chr1_2:5435306-5435325 | Msa0051340:intron | 30.0% |
| ACATCTAATGTGTGTCTATT+TGG | - | chr1_2:5435399-5435418 | Msa0051340:CDS | 30.0% | |
| AACTTTGACAAAAAAGTGGT+TGG | + | chr1_2:5435483-5435502 | None:intergenic | 30.0% | |
| AATGACAAAAGAAAAGTGGT+TGG | + | chr1_2:5435512-5435531 | None:intergenic | 30.0% | |
| TTAACTTTAGCAGATGACTT+GGG | - | chr1_2:5435644-5435663 | Msa0051340:CDS | 30.0% | |
| AGGGGAATAAATTCTAAGTA+TGG | - | chr1_2:5435679-5435698 | Msa0051340:CDS | 30.0% | |
| AGGGAAAGTAAGAATTAGTT+GGG | - | chr1_2:5435755-5435774 | Msa0051340:CDS | 30.0% | |
| ! | ATTTGGGATTTGGTTATATG+AGG | - | chr1_2:5435780-5435799 | Msa0051340:intron | 30.0% |
| !! | TTTCTTGCTTCTGTTATTTC+TGG | - | chr1_2:5435960-5435979 | Msa0051340:intron | 30.0% |
| TGCAAGGTTTGCAATAAATT+TGG | - | chr1_2:5435991-5436010 | Msa0051340:intron | 30.0% | |
| !! | AACACATTTTGATCTGTCAA+AGG | + | chr1_2:5436120-5436139 | None:intergenic | 30.0% |
| CAAGCATTTCTTGAAAATTG+AGG | + | chr1_2:5436158-5436177 | None:intergenic | 30.0% | |
| GGTCCTATCACATTTATTAA+AGG | + | chr1_2:5436217-5436236 | None:intergenic | 30.0% | |
| TGTTCCAAATCTTCTAATCA+TGG | - | chr1_2:5436442-5436461 | Msa0051340:CDS | 30.0% | |
| ATTGCCATGATTAGAAGATT+TGG | + | chr1_2:5436449-5436468 | None:intergenic | 30.0% | |
| AAATCTTCTAATCATGGCAA+TGG | - | chr1_2:5436448-5436467 | Msa0051340:CDS | 30.0% | |
| CAGACAACTGAAGATAAAAA+AGG | - | chr1_2:5436809-5436828 | Msa0051340:CDS | 30.0% | |
| TTAGAAGATAAGCAAAGTCA+AGG | + | chr1_2:5436977-5436996 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+CGG | + | chr1_2:5437228-5437247 | None:intergenic | 30.0% | |
| AACAAAATAAGGAAAAGAGG+AGG | + | chr1_2:5437240-5437259 | None:intergenic | 30.0% | |
| ! | AGTATTTCACCTTTTATGTG+TGG | - | chr1_2:5437446-5437465 | Msa0051340:intron | 30.0% |
| !!! | TCACTGAGATCATTTTTTAC+TGG | + | chr1_2:5437558-5437577 | None:intergenic | 30.0% |
| ! | CCAAGATTGACTCATTAATT+AGG | + | chr1_2:5437614-5437633 | None:intergenic | 30.0% |
| CCTAATTAATGAGTCAATCT+TGG | - | chr1_2:5437611-5437630 | Msa0051340:intron | 30.0% | |
| CAATAACAATTGGTACTTCT+TGG | + | chr1_2:5437782-5437801 | None:intergenic | 30.0% | |
| AACAAGAGCTTCAATGTTAA+TGG | + | chr1_2:5437946-5437965 | None:intergenic | 30.0% | |
| ATAATCTTTATCTTGCGGTT+TGG | + | chr1_2:5438031-5438050 | None:intergenic | 30.0% | |
| ATAATTTGAAGGGAGAACAA+TGG | - | chr1_2:5438056-5438075 | Msa0051340:intron | 30.0% | |
| AAGTTGGAAAAGATGATTCT+AGG | - | chr1_2:5438230-5438249 | Msa0051340:CDS | 30.0% | |
| ATTTCTTCAAACCACCCATT+TGG | - | chr1_2:5432231-5432250 | Msa0051340:CDS | 35.0% | |
| GCGCAAAGATACTAATTTGA+AGG | + | chr1_2:5432681-5432700 | None:intergenic | 35.0% | |
| CAAATTAGTATCTTTGCGCT+AGG | - | chr1_2:5432682-5432701 | Msa0051340:intron | 35.0% | |
| ! | ATTGTGTGTTGAGTCTGTTT+TGG | - | chr1_2:5432794-5432813 | Msa0051340:intron | 35.0% |
| ! | TTGTGTGTTGAGTCTGTTTT+GGG | - | chr1_2:5432795-5432814 | Msa0051340:intron | 35.0% |
| AAAGGGGAAAGGTAGAAATT+AGG | - | chr1_2:5432987-5433006 | Msa0051340:intron | 35.0% | |
| AAGGGGAAAGGTAGAAATTA+GGG | - | chr1_2:5432988-5433007 | Msa0051340:intron | 35.0% | |
| TCTCTGATCAACTATCAATG+AGG | + | chr1_2:5433069-5433088 | None:intergenic | 35.0% | |
| AGAACAAATCTAGACCCTAT+GGG | + | chr1_2:5433212-5433231 | None:intergenic | 35.0% | |
| AAGAACAAATCTAGACCCTA+TGG | + | chr1_2:5433213-5433232 | None:intergenic | 35.0% | |
| ! | ATAGGGTCTAGATTTGTTCT+TGG | - | chr1_2:5433212-5433231 | Msa0051340:CDS | 35.0% |
| ! | TTGCTTAAGCTGTTTAGCTT+TGG | - | chr1_2:5433247-5433266 | Msa0051340:intron | 35.0% |
| ATTTGTTCCTCTGTTCTTGT+TGG | - | chr1_2:5433281-5433300 | Msa0051340:intron | 35.0% | |
| GTAAAAACCAACAAGAACAG+AGG | + | chr1_2:5433291-5433310 | None:intergenic | 35.0% | |
| !!! | TTGTTGGTTTTTACAGCAAG+TGG | - | chr1_2:5433297-5433316 | Msa0051340:intron | 35.0% |
| CAAACCATAAAGCATGTACT+TGG | - | chr1_2:5433328-5433347 | Msa0051340:intron | 35.0% | |
| CATGTACTTGGAACGATTAA+TGG | - | chr1_2:5433340-5433359 | Msa0051340:intron | 35.0% | |
| CTGAAGAATCTATGAGATGT+TGG | + | chr1_2:5433446-5433465 | None:intergenic | 35.0% | |
| TTCCTTGTCTTCAAGTACAA+TGG | - | chr1_2:5433686-5433705 | Msa0051340:intron | 35.0% | |
| GAAGTCAATACTCCTTCTAA+TGG | - | chr1_2:5433848-5433867 | Msa0051340:intron | 35.0% | |
| TGCGAAGAAATTGAGTGAAA+TGG | + | chr1_2:5433943-5433962 | None:intergenic | 35.0% | |
| TACCGTTGTACTTAAAGACA+AGG | + | chr1_2:5434814-5434833 | None:intergenic | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | - | chr1_2:5434881-5434900 | Msa0051340:intron | 35.0% |
| ATAGGCGTAACTTCATTAAC+AGG | + | chr1_2:5435037-5435056 | None:intergenic | 35.0% | |
| TCAATTCGATACACATGCTT+TGG | - | chr1_2:5435218-5435237 | Msa0051340:intron | 35.0% | |
| GATACTCATAAACCACACTT+AGG | + | chr1_2:5435321-5435340 | None:intergenic | 35.0% | |
| CAAGTCATCTGCTAAAGTTA+AGG | + | chr1_2:5435645-5435664 | None:intergenic | 35.0% | |
| CTTAACTTTAGCAGATGACT+TGG | - | chr1_2:5435643-5435662 | Msa0051340:CDS | 35.0% | |
| CTACAAAAGAGAGAACAATG+AGG | - | chr1_2:5435724-5435743 | Msa0051340:CDS | 35.0% | |
| GAGGGAAAGTAAGAATTAGT+TGG | - | chr1_2:5435754-5435773 | Msa0051340:CDS | 35.0% | |
| ! | TAGTTGGGTAATTTGGGATT+TGG | - | chr1_2:5435770-5435789 | Msa0051340:intron | 35.0% |
| !! | GGAAGAATCGTTGTTTTGTT+TGG | - | chr1_2:5435833-5435852 | Msa0051340:intron | 35.0% |
| !! | TGCTTCTGTTATTTCTGGAA+AGG | - | chr1_2:5435965-5435984 | Msa0051340:intron | 35.0% |
| ! | ATTTCTGGAAAGGAATTGCA+AGG | - | chr1_2:5435975-5435994 | Msa0051340:intron | 35.0% |
| !! | CAAAATGTGTTGCTTTGAGT+AGG | - | chr1_2:5436129-5436148 | Msa0051340:intron | 35.0% |
| GCATTTCTTGAAAATTGAGG+TGG | + | chr1_2:5436155-5436174 | None:intergenic | 35.0% | |
| ! | AGAAATGCTTGAGTTTTCTG+AGG | - | chr1_2:5436167-5436186 | Msa0051340:intron | 35.0% |
| AAATGTGATAGGACCCATTA+AGG | - | chr1_2:5436222-5436241 | Msa0051340:intron | 35.0% | |
| AATGTGATAGGACCCATTAA+GGG | - | chr1_2:5436223-5436242 | Msa0051340:intron | 35.0% | |
| ATTTGGACCTTTCCCTTAAT+GGG | + | chr1_2:5436238-5436257 | None:intergenic | 35.0% | |
| ! | TTGTCAACTTAGTTTGAGAG+AGG | - | chr1_2:5436276-5436295 | Msa0051340:intron | 35.0% |
| ! | TGTCAACTTAGTTTGAGAGA+GGG | - | chr1_2:5436277-5436296 | Msa0051340:intron | 35.0% |
| AGAGAAATACACATGGAAGA+GGG | - | chr1_2:5436300-5436319 | Msa0051340:intron | 35.0% | |
| ! | GATTAGAAGATTTGGAACAC+AGG | + | chr1_2:5436441-5436460 | None:intergenic | 35.0% |
| TTTCATGGTAAAGATCCTGT+TGG | + | chr1_2:5436555-5436574 | None:intergenic | 35.0% | |
| !! | AGCTTTGCTCTAAGGATTAT+AGG | + | chr1_2:5436733-5436752 | None:intergenic | 35.0% |
| ! | CTTTTCTTCAAGCATTCACA+AGG | + | chr1_2:5436944-5436963 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1_2:5437064-5437083 | None:intergenic | 35.0% |
| ! | TAGACAAGTATCAGTTTGCT+AGG | + | chr1_2:5437065-5437084 | None:intergenic | 35.0% |
| ATCAAAACGTTCAATGTCGA+TGG | - | chr1_2:5437266-5437285 | Msa0051340:intron | 35.0% | |
| AGGTTACTTAAAGATAAGGG+CGG | + | chr1_2:5437364-5437383 | None:intergenic | 35.0% | |
| CCCAGGTTACTTAAAGATAA+GGG | + | chr1_2:5437367-5437386 | None:intergenic | 35.0% | |
| CCCTTATCTTTAAGTAACCT+GGG | - | chr1_2:5437364-5437383 | Msa0051340:intron | 35.0% | |
| ACCCAGGTTACTTAAAGATA+AGG | + | chr1_2:5437368-5437387 | None:intergenic | 35.0% | |
| ! | ATTTCACCTTTTATGTGTGG+AGG | - | chr1_2:5437449-5437468 | Msa0051340:intron | 35.0% |
| TATCACTATGGAATTGTGGA+TGG | + | chr1_2:5437586-5437605 | None:intergenic | 35.0% | |
| AATTAGGACTCGTATCACTA+TGG | + | chr1_2:5437598-5437617 | None:intergenic | 35.0% | |
| ACTTGCACTTCAATGAATGT+TGG | - | chr1_2:5437654-5437673 | Msa0051340:intron | 35.0% | |
| AATACAGATCACACTCTATG+TGG | - | chr1_2:5438109-5438128 | Msa0051340:intron | 35.0% | |
| GAAACGGATGAACTGGAAAT+GGG | + | chr1_2:5432206-5432225 | None:intergenic | 40.0% | |
| TGAAACGGATGAACTGGAAA+TGG | + | chr1_2:5432207-5432226 | None:intergenic | 40.0% | |
| ATTGAGTGAAACGGATGAAC+TGG | + | chr1_2:5432213-5432232 | None:intergenic | 40.0% | |
| ! | AAGTTGTTGTTCCAAATGGG+TGG | + | chr1_2:5432245-5432264 | None:intergenic | 40.0% |
| ! | CTTTTCCTGTAACCAAGAGT+AGG | - | chr1_2:5432874-5432893 | Msa0051340:intron | 40.0% |
| CAAGAGTAGGAACCAAAAGA+GGG | - | chr1_2:5432887-5432906 | Msa0051340:intron | 40.0% | |
| AAGAGTAGGAACCAAAAGAG+GGG | - | chr1_2:5432888-5432907 | Msa0051340:intron | 40.0% | |
| ! | ATTTCACTCTACCCCTCTTT+TGG | + | chr1_2:5432902-5432921 | None:intergenic | 40.0% |
| AAGAGGGGTAGAGTGAAATT+AGG | - | chr1_2:5432903-5432922 | Msa0051340:intron | 40.0% | |
| AGAGGGGTAGAGTGAAATTA+GGG | - | chr1_2:5432904-5432923 | Msa0051340:intron | 40.0% | |
| TTGTAACTCTCGTGAGAGAA+AGG | - | chr1_2:5432969-5432988 | Msa0051340:intron | 40.0% | |
| TGTAACTCTCGTGAGAGAAA+GGG | - | chr1_2:5432970-5432989 | Msa0051340:intron | 40.0% | |
| ! | ACCAAATTGACTTACGTCTG+GGG | + | chr1_2:5433102-5433121 | None:intergenic | 40.0% |
| ! | GACCAAATTGACTTACGTCT+GGG | + | chr1_2:5433103-5433122 | None:intergenic | 40.0% |
| AAGTCAATTTGGTCCGAACT+AGG | - | chr1_2:5433109-5433128 | Msa0051340:intron | 40.0% | |
| CGTTCCAAGTACATGCTTTA+TGG | + | chr1_2:5433335-5433354 | None:intergenic | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_2:5433570-5433589 | None:intergenic | 40.0% | |
| GATACAATTTACTCCACGAC+TGG | - | chr1_2:5433620-5433639 | Msa0051340:intron | 40.0% | |
| CACCATTGTACTTGAAGACA+AGG | + | chr1_2:5433691-5433710 | None:intergenic | 40.0% | |
| CAATGGTGAATCACTGTTTG+AGG | - | chr1_2:5433703-5433722 | Msa0051340:intron | 40.0% | |
| CATTCAACACTGCCATTAGA+AGG | + | chr1_2:5433863-5433882 | None:intergenic | 40.0% | |
| ! | TCTAATGGCAGTGTTGAATG+CGG | - | chr1_2:5433863-5433882 | Msa0051340:intron | 40.0% |
| CGGTTTGCCTGAAAAATCAT+GGG | - | chr1_2:5433883-5433902 | Msa0051340:intron | 40.0% | |
| TTTGCCTGAAAAATCATGGG+AGG | - | chr1_2:5433886-5433905 | Msa0051340:intron | 40.0% | |
| ! | TCTTCCTCCCATGATTTTTC+AGG | + | chr1_2:5433893-5433912 | None:intergenic | 40.0% |
| TTGAGCTTGCATTGCAATAG+AGG | - | chr1_2:5434313-5434332 | Msa0051340:intron | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5434680-5434699 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5434677-5434696 | Msa0051340:intron | 40.0% | |
| AGATGGTACTGTTTACTTCG+TGG | - | chr1_2:5434739-5434758 | Msa0051340:intron | 40.0% | |
| CAACGGTAAATCACTCTTTG+AGG | - | chr1_2:5434826-5434845 | Msa0051340:intron | 40.0% | |
| TGGAGATAGTTTCTGTGAGA+AGG | - | chr1_2:5434862-5434881 | Msa0051340:intron | 40.0% | |
| !! | GATCCTTTTGCCGTTTGTTT+GGG | + | chr1_2:5435005-5435024 | None:intergenic | 40.0% |
| !! | TGATCCTTTTGCCGTTTGTT+TGG | + | chr1_2:5435006-5435025 | None:intergenic | 40.0% |
| ! | TCACAAGAGTTACCTGCTTT+TGG | + | chr1_2:5435082-5435101 | None:intergenic | 40.0% |
| TTGTGAGAGAGCTCATGATT+TGG | - | chr1_2:5435096-5435115 | Msa0051340:intron | 40.0% | |
| !! | TGATTTGGTGGCTTGTAACA+AGG | - | chr1_2:5435111-5435130 | Msa0051340:intron | 40.0% |
| TTTGGACATGCATCTCATCT+TGG | - | chr1_2:5435417-5435436 | Msa0051340:CDS | 40.0% | |
| ! | TGGTTGGCTACTCTAAGTTT+AGG | + | chr1_2:5435467-5435486 | None:intergenic | 40.0% |
| ACTTGGGCTTGAGTGATAAA+GGG | - | chr1_2:5435660-5435679 | Msa0051340:CDS | 40.0% | |
| CAAAAGAGAGAACAATGAGG+TGG | - | chr1_2:5435727-5435746 | Msa0051340:CDS | 40.0% | |
| ! | TGGGATTTGGTTATATGAGG+TGG | - | chr1_2:5435783-5435802 | Msa0051340:intron | 40.0% |
| GTTATATGAGGTGGTAGTTG+TGG | - | chr1_2:5435792-5435811 | Msa0051340:intron | 40.0% | |
| AGCATTGCTCTGTGTAGTTT+GGG | - | chr1_2:5435883-5435902 | Msa0051340:intron | 40.0% | |
| TTTCCTGTGACTTTGCTCAA+TGG | - | chr1_2:5436033-5436052 | Msa0051340:intron | 40.0% | |
| TTCCTGTGACTTTGCTCAAT+GGG | - | chr1_2:5436034-5436053 | Msa0051340:intron | 40.0% | |
| GCTTACTTGTTTCCTGCAAA+AGG | - | chr1_2:5436080-5436099 | Msa0051340:intron | 40.0% | |
| ! | ATACGTGTTTGACCTTTTGC+AGG | + | chr1_2:5436095-5436114 | None:intergenic | 40.0% |
| CATTTGGACCTTTCCCTTAA+TGG | + | chr1_2:5436239-5436258 | None:intergenic | 40.0% | |
| CATTAAGGGAAAGGTCCAAA+TGG | - | chr1_2:5436237-5436256 | Msa0051340:intron | 40.0% | |
| GAGAGAAATACACATGGAAG+AGG | - | chr1_2:5436299-5436318 | Msa0051340:intron | 40.0% | |
| GAGAAATACACATGGAAGAG+GGG | - | chr1_2:5436301-5436320 | Msa0051340:intron | 40.0% | |
| GAAGAGGGGAATATATAGAG+AGG | - | chr1_2:5436315-5436334 | Msa0051340:intron | 40.0% | |
| ! | AGAAGATTTGGAACACAGGT+GGG | + | chr1_2:5436437-5436456 | None:intergenic | 40.0% |
| ! | TAGAAGATTTGGAACACAGG+TGG | + | chr1_2:5436438-5436457 | None:intergenic | 40.0% |
| !! | ATGGGTTGAAAGAGCATCAA+GGG | + | chr1_2:5436532-5436551 | None:intergenic | 40.0% |
| TGGTAAAGATCCTGTTGGAT+GGG | + | chr1_2:5436550-5436569 | None:intergenic | 40.0% | |
| ATGGTAAAGATCCTGTTGGA+TGG | + | chr1_2:5436551-5436570 | None:intergenic | 40.0% | |
| ! | ACTGGTTTCCCTCTTATATC+TGG | - | chr1_2:5436617-5436636 | Msa0051340:CDS | 40.0% |
| TCTGAAAGAGCTTTGCTCTA+AGG | + | chr1_2:5436741-5436760 | None:intergenic | 40.0% | |
| TTAGAGCAAAGCTCTTTCAG+AGG | - | chr1_2:5436740-5436759 | Msa0051340:CDS | 40.0% | |
| TACAATTTCTACTGGGCAGA+GGG | + | chr1_2:5436779-5436798 | None:intergenic | 40.0% | |
| TTACAATTTCTACTGGGCAG+AGG | + | chr1_2:5436780-5436799 | None:intergenic | 40.0% | |
| TTCTTCAAGCATTCACAAGG+AGG | + | chr1_2:5436941-5436960 | None:intergenic | 40.0% | |
| AACTGTTCAATTCCACACAG+AGG | - | chr1_2:5437157-5437176 | Msa0051340:intron | 40.0% | |
| GAAAAACTCACCAGAATACG+TGG | + | chr1_2:5437293-5437312 | None:intergenic | 40.0% | |
| TACTTAAAGATAAGGGCGGA+GGG | + | chr1_2:5437360-5437379 | None:intergenic | 40.0% | |
| TTACTTAAAGATAAGGGCGG+AGG | + | chr1_2:5437361-5437380 | None:intergenic | 40.0% | |
| GCCCTTATCTTTAAGTAACC+TGG | - | chr1_2:5437363-5437382 | Msa0051340:intron | 40.0% | |
| AAGCAAATGAAACACTACCC+AGG | + | chr1_2:5437384-5437403 | None:intergenic | 40.0% | |
| GCTTGACAAACTGATCTTGT+TGG | - | chr1_2:5437400-5437419 | Msa0051340:intron | 40.0% | |
| TACCATCCTCCACACATAAA+AGG | + | chr1_2:5437458-5437477 | None:intergenic | 40.0% | |
| CTCGTATCACTATGGAATTG+TGG | + | chr1_2:5437590-5437609 | None:intergenic | 40.0% | |
| TAATGGCAAGCACAGTGAAT+AGG | + | chr1_2:5437929-5437948 | None:intergenic | 40.0% | |
| ! | ATGTGCCTTTGAGAATTGGT+GGG | + | chr1_2:5438005-5438024 | None:intergenic | 40.0% |
| ! | GAAGATGTGCCTTTGAGAAT+TGG | + | chr1_2:5438009-5438028 | None:intergenic | 40.0% |
| TCTGTATTCACTCTAGTCGT+TGG | + | chr1_2:5438097-5438116 | None:intergenic | 40.0% | |
| CGTGGCAACAACATAAAAGT+TGG | - | chr1_2:5438151-5438170 | Msa0051340:CDS | 40.0% | |
| TGGAAAAGATGATTCTAGGC+TGG | - | chr1_2:5438234-5438253 | Msa0051340:CDS | 40.0% | |
| GAAGAACACAAAACAGCAGC+AGG | - | chr1_2:5432155-5432174 | Msa0051340:CDS | 45.0% | |
| ACAAAACAGCAGCAGGTCTT+GGG | - | chr1_2:5432162-5432181 | Msa0051340:CDS | 45.0% | |
| CTTGGGAGGAAGACATTTAC+TGG | - | chr1_2:5432179-5432198 | Msa0051340:CDS | 45.0% | |
| TGGTTCCTACTCTTGGTTAC+AGG | + | chr1_2:5432882-5432901 | None:intergenic | 45.0% | |
| !!! | CCTCTTTTGGTTCCTACTCT+TGG | + | chr1_2:5432889-5432908 | None:intergenic | 45.0% |
| CCAAGAGTAGGAACCAAAAG+AGG | - | chr1_2:5432886-5432905 | Msa0051340:intron | 45.0% | |
| GTAACTCTCGTGAGAGAAAG+GGG | - | chr1_2:5432971-5432990 | Msa0051340:intron | 45.0% | |
| ! | CAAATTGACTTACGTCTGGG+GGG | + | chr1_2:5433100-5433119 | None:intergenic | 45.0% |
| ! | CCAAATTGACTTACGTCTGG+GGG | + | chr1_2:5433101-5433120 | None:intergenic | 45.0% |
| ! | GGACCAAATTGACTTACGTC+TGG | + | chr1_2:5433104-5433123 | None:intergenic | 45.0% |
| ! | CCTTTAAGGGTCACATTTGC+TGG | + | chr1_2:5433557-5433576 | None:intergenic | 45.0% |
| CCAGCAAATGTGACCCTTAA+AGG | - | chr1_2:5433554-5433573 | Msa0051340:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5433571-5433590 | None:intergenic | 45.0% | |
| ATATCCCACACAACTCCACT+AGG | + | chr1_2:5433581-5433600 | None:intergenic | 45.0% | |
| AGTGGAGTTGTGTGGGATAT+AGG | - | chr1_2:5433581-5433600 | Msa0051340:intron | 45.0% | |
| GTGGAGTTGTGTGGGATATA+GGG | - | chr1_2:5433582-5433601 | Msa0051340:intron | 45.0% | |
| CAATTTACTCCACGACTGGT+TGG | - | chr1_2:5433624-5433643 | Msa0051340:intron | 45.0% | |
| GACAAGCTCATACTGGACAA+GGG | - | chr1_2:5433789-5433808 | Msa0051340:intron | 45.0% | |
| ACAAGCTCATACTGGACAAG+GGG | - | chr1_2:5433790-5433809 | Msa0051340:intron | 45.0% | |
| GCGGTTTGCCTGAAAAATCA+TGG | - | chr1_2:5433882-5433901 | Msa0051340:intron | 45.0% | |
| CATGGGAGGAAGACATTTAC+TGG | - | chr1_2:5433900-5433919 | Msa0051340:intron | 45.0% | |
| CTGAAGAGCCCAAGAGATAT+TGG | + | chr1_2:5434567-5434586 | None:intergenic | 45.0% | |
| AACTCCGCTAGGACCTTTAA+GGG | + | chr1_2:5434693-5434712 | None:intergenic | 45.0% | |
| ATATTCCACACAACTCCGCT+AGG | + | chr1_2:5434704-5434723 | None:intergenic | 45.0% | |
| AGCGGAGTTGTGTGGAATAT+AGG | - | chr1_2:5434704-5434723 | Msa0051340:intron | 45.0% | |
| GCGGAGTTGTGTGGAATATA+GGG | - | chr1_2:5434705-5434724 | Msa0051340:intron | 45.0% | |
| ATAGGGCTGACAACTAGAGA+TGG | - | chr1_2:5433599-5433618 | Msa0051340:intron | 45.0% | |
| GGTACTGTTTACTTCGTGGA+TGG | - | chr1_2:5434743-5434762 | Msa0051340:intron | 45.0% | |
| CTGTTTACTTCGTGGATGGT+TGG | - | chr1_2:5434747-5434766 | Msa0051340:intron | 45.0% | |
| GGAATGCTCAAACCGAACAA+GGG | - | chr1_2:5434912-5434931 | Msa0051340:intron | 45.0% | |
| GAATGCTCAAACCGAACAAG+GGG | - | chr1_2:5434913-5434932 | Msa0051340:intron | 45.0% | |
| AATGCTCAAACCGAACAAGG+GGG | - | chr1_2:5434914-5434933 | Msa0051340:intron | 45.0% | |
| !! | CTTTTGCCGTTTGTTTGGGA+GGG | + | chr1_2:5435001-5435020 | None:intergenic | 45.0% |
| ACGGCAAAAGGATCAAGAAG+AGG | - | chr1_2:5435011-5435030 | Msa0051340:intron | 45.0% | |
| ! | TGAGAGAGCTCATGATTTGG+TGG | - | chr1_2:5435099-5435118 | Msa0051340:intron | 45.0% |
| GACTTGGGCTTGAGTGATAA+AGG | - | chr1_2:5435659-5435678 | Msa0051340:CDS | 45.0% | |
| CTTGGGCTTGAGTGATAAAG+GGG | - | chr1_2:5435661-5435680 | Msa0051340:CDS | 45.0% | |
| TGGTAGTTGTGGAGAGATAG+AGG | - | chr1_2:5435803-5435822 | Msa0051340:intron | 45.0% | |
| GGTAGTTGTGGAGAGATAGA+GGG | - | chr1_2:5435804-5435823 | Msa0051340:intron | 45.0% | |
| !! | TGGAGAGATAGAGGGTATCA+TGG | - | chr1_2:5435812-5435831 | Msa0051340:intron | 45.0% |
| ! | GAGCATTGCTCTGTGTAGTT+TGG | - | chr1_2:5435882-5435901 | Msa0051340:intron | 45.0% |
| ! | AGGAAAAGCTTTGACGAGGA+AGG | + | chr1_2:5436019-5436038 | None:intergenic | 45.0% |
| ! | TCACAGGAAAAGCTTTGACG+AGG | + | chr1_2:5436023-5436042 | None:intergenic | 45.0% |
| GATAGGACCCATTAAGGGAA+AGG | - | chr1_2:5436228-5436247 | Msa0051340:intron | 45.0% | |
| TAAGCACTCTCCTCTCCATT+TGG | + | chr1_2:5436255-5436274 | None:intergenic | 45.0% | |
| GAGAGGGAGAGAAATACACA+TGG | - | chr1_2:5436293-5436312 | Msa0051340:intron | 45.0% | |
| TATAGAGAGGCAGTGTCATG+AGG | - | chr1_2:5436328-5436347 | Msa0051340:intron | 45.0% | |
| CTCAGTTGAACAGCTAATGC+TGG | + | chr1_2:5436411-5436430 | None:intergenic | 45.0% | |
| ! | GAAGATTTGGAACACAGGTG+GGG | + | chr1_2:5436436-5436455 | None:intergenic | 45.0% |
| !!! | GGCGAAGCTGGTCTTATTTT+TGG | + | chr1_2:5436511-5436530 | None:intergenic | 45.0% |
| !! | GATGGGTTGAAAGAGCATCA+AGG | + | chr1_2:5436533-5436552 | None:intergenic | 45.0% |
| GGTAGAGTCACTGGATTTCA+TGG | + | chr1_2:5436570-5436589 | None:intergenic | 45.0% | |
| GTTTCCCTCTTATATCTGGC+AGG | - | chr1_2:5436621-5436640 | Msa0051340:CDS | 45.0% | |
| CTGACCTGCCAGATATAAGA+GGG | + | chr1_2:5436628-5436647 | None:intergenic | 45.0% | |
| TCTGACCTGCCAGATATAAG+AGG | + | chr1_2:5436629-5436648 | None:intergenic | 45.0% | |
| ! | CACCTTTTATGTGTGGAGGA+TGG | - | chr1_2:5437453-5437472 | Msa0051340:intron | 45.0% |
| ATGTGTGGAGGATGGTAACT+TGG | - | chr1_2:5437461-5437480 | Msa0051340:intron | 45.0% | |
| TGTACCCCACCAATTCTCAA+AGG | - | chr1_2:5437997-5438016 | Msa0051340:intron | 45.0% | |
| ! | TGTGCCTTTGAGAATTGGTG+GGG | + | chr1_2:5438004-5438023 | None:intergenic | 45.0% |
| ! | GATGTGCCTTTGAGAATTGG+TGG | + | chr1_2:5438006-5438025 | None:intergenic | 45.0% |
| ACAGATCACACTCTATGTGG+AGG | - | chr1_2:5438112-5438131 | Msa0051340:intron | 45.0% | |
| ATCACACTCTATGTGGAGGA+TGG | - | chr1_2:5438116-5438135 | Msa0051340:intron | 45.0% | |
| TCACACTCTATGTGGAGGAT+GGG | - | chr1_2:5438117-5438136 | Msa0051340:intron | 45.0% | |
| ! | GGATGGGTGAATTTTGTTCG+TGG | - | chr1_2:5438133-5438152 | Msa0051340:intron | 45.0% |
| CACAAAACAGCAGCAGGTCT+TGG | - | chr1_2:5432161-5432180 | Msa0051340:CDS | 50.0% | |
| TCTCGTGAGAGAAAGGGGAA+AGG | - | chr1_2:5432976-5432995 | Msa0051340:intron | 50.0% | |
| CCCCCAGACGTAAGTCAATT+TGG | - | chr1_2:5433098-5433117 | Msa0051340:intron | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5433563-5433582 | Msa0051340:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_2:5433573-5433592 | Msa0051340:intron | 50.0% | |
| AGGTCCTAGTGGAGTTGTGT+GGG | - | chr1_2:5433574-5433593 | Msa0051340:intron | 50.0% | |
| GAATTGTTGCCAACCAGTCG+TGG | + | chr1_2:5433636-5433655 | None:intergenic | 50.0% | |
| GAACGTGGACAAGCTCATAC+TGG | - | chr1_2:5433782-5433801 | Msa0051340:intron | 50.0% | |
| GGACAAGCTCATACTGGACA+AGG | - | chr1_2:5433788-5433807 | Msa0051340:intron | 50.0% | |
| CAAGCTCATACTGGACAAGG+GGG | - | chr1_2:5433791-5433810 | Msa0051340:intron | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+CGG | - | chr1_2:5433563-5433582 | Msa0051340:intron | 50.0% | |
| CAACTCCGCTAGGACCTTTA+AGG | + | chr1_2:5434694-5434713 | None:intergenic | 50.0% | |
| GGGAATGCTCAAACCGAACA+AGG | - | chr1_2:5434911-5434930 | Msa0051340:intron | 50.0% | |
| AACCGAACAAGGGGGTAGAA+AGG | - | chr1_2:5434922-5434941 | Msa0051340:intron | 50.0% | |
| TGCCTTTCTACCCCCTTGTT+CGG | + | chr1_2:5434927-5434946 | None:intergenic | 50.0% | |
| TGTTTCCCCTGAGCAGTTCA+TGG | - | chr1_2:5434964-5434983 | Msa0051340:intron | 50.0% | |
| ATCAGCCATGAACTGCTCAG+GGG | + | chr1_2:5434972-5434991 | None:intergenic | 50.0% | |
| CATCAGCCATGAACTGCTCA+GGG | + | chr1_2:5434973-5434992 | None:intergenic | 50.0% | |
| TGAGCAGTTCATGGCTGATG+CGG | - | chr1_2:5434973-5434992 | Msa0051340:intron | 50.0% | |
| !! | CCTTTTGCCGTTTGTTTGGG+AGG | + | chr1_2:5435002-5435021 | None:intergenic | 50.0% |
| CCTCCCAAACAAACGGCAAA+AGG | - | chr1_2:5434999-5435018 | Msa0051340:intron | 50.0% | |
| CTTCCTCGCTTAGTCTGGAT+AGG | + | chr1_2:5435055-5435074 | None:intergenic | 50.0% | |
| GAGAGAACAATGAGGTGGCA+AGG | - | chr1_2:5435732-5435751 | Msa0051340:CDS | 50.0% | |
| AGAACAATGAGGTGGCAAGG+AGG | - | chr1_2:5435735-5435754 | Msa0051340:CDS | 50.0% | |
| GAACAATGAGGTGGCAAGGA+GGG | - | chr1_2:5435736-5435755 | Msa0051340:CDS | 50.0% | |
| CTCCCATTGAGCAAAGTCAC+AGG | + | chr1_2:5436039-5436058 | None:intergenic | 50.0% | |
| AGGGAAAGGTCCAAATGGAG+AGG | - | chr1_2:5436242-5436261 | Msa0051340:intron | 50.0% | |
| GCTCTTTCAACCCATCCAAC+AGG | - | chr1_2:5436537-5436556 | Msa0051340:CDS | 50.0% | |
| AGTGACGATGGACGACATGT+GGG | + | chr1_2:5436600-5436619 | None:intergenic | 50.0% | |
| AAGAGGGAAACCAGTGACGA+TGG | + | chr1_2:5436612-5436631 | None:intergenic | 50.0% | |
| ! | TTCTACTGGGCAGAGGGTAT+TGG | + | chr1_2:5436773-5436792 | None:intergenic | 50.0% |
| TGTCGATGGTCCACGTATTC+TGG | - | chr1_2:5437280-5437299 | Msa0051340:intron | 50.0% | |
| AAACAGCAGCAGGTCTTGGG+AGG | - | chr1_2:5432165-5432184 | Msa0051340:CDS | 55.0% | |
| AAGGTCCTAGCGGAGTTGTG+TGG | - | chr1_2:5434696-5434715 | Msa0051340:intron | 55.0% | |
| GCATCAGCCATGAACTGCTC+AGG | + | chr1_2:5434974-5434993 | None:intergenic | 55.0% | |
| GCGGTTCCCTCCCAAACAAA+CGG | - | chr1_2:5434992-5435011 | Msa0051340:intron | 55.0% | |
| ACGCCTATCCAGACTAAGCG+AGG | - | chr1_2:5435049-5435068 | Msa0051340:intron | 55.0% | |
| GTCGTCTTCCTCGCTTAGTC+TGG | + | chr1_2:5435060-5435079 | None:intergenic | 55.0% | |
| CGAGGAAGACGACCAAAAGC+AGG | - | chr1_2:5435067-5435086 | Msa0051340:intron | 55.0% | |
| AGAGAGGCAGTGTCATGAGG+AGG | - | chr1_2:5436331-5436350 | Msa0051340:intron | 55.0% | |
| !! | AAGAGCATCAAGGGCGAAGC+TGG | + | chr1_2:5436523-5436542 | None:intergenic | 55.0% |
| GGCTACGAAGGTAGAGTCAC+TGG | + | chr1_2:5436579-5436598 | None:intergenic | 55.0% | |
| CAGTGACGATGGACGACATG+TGG | + | chr1_2:5436601-5436620 | None:intergenic | 55.0% | |
| CACATGTCGTCCATCGTCAC+TGG | - | chr1_2:5436599-5436618 | Msa0051340:CDS | 55.0% | |
| TTGACAGTGCTGCCTCTGTG+TGG | + | chr1_2:5437172-5437191 | None:intergenic | 55.0% | |
| CGTGTTCACGTCGCTGAAGT+TGG | - | chr1_2:5438214-5438233 | Msa0051340:CDS | 55.0% | |
| CCAGGCGTTTGACAGCAGCA+GGG | - | chr1_2:5432712-5432731 | Msa0051340:intron | 60.0% | |
| CAGGCGTTTGACAGCAGCAG+GGG | - | chr1_2:5432713-5432732 | Msa0051340:intron | 60.0% | |
| CAATTTGCGCCATGCTGCGC+CGG | - | chr1_2:5432751-5432770 | Msa0051340:intron | 60.0% | |
| AATTTGCGCCATGCTGCGCC+GGG | - | chr1_2:5432752-5432771 | Msa0051340:intron | 60.0% | |
| CTGTGCAGCCAAAACACGCC+CGG | + | chr1_2:5432773-5432792 | None:intergenic | 60.0% | |
| !! | TTTTGGGTGCCAGACGCTCC+AGG | - | chr1_2:5432811-5432830 | Msa0051340:intron | 60.0% |
| AAGATCCGCACACCAGCACC+TGG | + | chr1_2:5432844-5432863 | None:intergenic | 60.0% | |
| !! | AGGTGCTGGTGTGCGGATCT+TGG | - | chr1_2:5432843-5432862 | Msa0051340:intron | 60.0% |
| !! | GGTGCTGGTGTGCGGATCTT+GGG | - | chr1_2:5432844-5432863 | Msa0051340:intron | 60.0% |
| TACTGGACAAGGGGGTCGCA+AGG | - | chr1_2:5433799-5433818 | Msa0051340:intron | 60.0% | |
| ACAAGGGGGTCGCAAGGCAA+AGG | - | chr1_2:5433805-5433824 | Msa0051340:intron | 60.0% | |
| ! | GGACGACATGTGGGCTACGA+AGG | + | chr1_2:5436591-5436610 | None:intergenic | 60.0% |
| TTTGCGCTAGGCGCAACGCC+AGG | - | chr1_2:5432694-5432713 | Msa0051340:intron | 65.0% | |
| GCCAGGCGTTTGACAGCAGC+AGG | - | chr1_2:5432711-5432730 | Msa0051340:intron | 65.0% | |
| CCCTGCTGCTGTCAAACGCC+TGG | + | chr1_2:5432715-5432734 | None:intergenic | 65.0% | |
| CGTTTGACAGCAGCAGGGGC+TGG | - | chr1_2:5432717-5432736 | Msa0051340:intron | 65.0% | |
| !! | ACAGCAGCAGGGGCTGGCTT+GGG | - | chr1_2:5432723-5432742 | Msa0051340:intron | 65.0% |
| CGGCGCAGCATGGCGCAAAT+TGG | + | chr1_2:5432753-5432772 | None:intergenic | 65.0% | |
| AAAACACGCCCGGCGCAGCA+TGG | + | chr1_2:5432763-5432782 | None:intergenic | 65.0% | |
| ! | ATGCTGCGCCGGGCGTGTTT+TGG | - | chr1_2:5432762-5432781 | Msa0051340:intron | 65.0% |
| !!! | CGGGCGTGTTTTGGCTGCAC+AGG | - | chr1_2:5432771-5432790 | Msa0051340:intron | 65.0% |
| !! | ATGCGCCAGGTGCTGGTGTG+CGG | - | chr1_2:5432836-5432855 | Msa0051340:intron | 65.0% |
| !! | GACAGCAGCAGGGGCTGGCT+TGG | - | chr1_2:5432722-5432741 | Msa0051340:intron | 70.0% |
| !! | CAGCAGCAGGGGCTGGCTTG+GGG | - | chr1_2:5432724-5432743 | Msa0051340:intron | 70.0% |
| GCACACCAGCACCTGGCGCA+TGG | + | chr1_2:5432837-5432856 | None:intergenic | 70.0% | |
| ! | GGCGCATGGCCTGGAGCGTC+TGG | + | chr1_2:5432823-5432842 | None:intergenic | 75.0% |
| GACGCTCCAGGCCATGCGCC+AGG | - | chr1_2:5432823-5432842 | Msa0051340:intron | 75.0% | |
| CCAGCACCTGGCGCATGGCC+TGG | + | chr1_2:5432832-5432851 | None:intergenic | 75.0% | |
| CCAGGCCATGCGCCAGGTGC+TGG | - | chr1_2:5432829-5432848 | Msa0051340:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5432148 | 5438264 | 5432148 | ID=Msa0051340;Name=Msa0051340 |
| chr1_2 | mRNA | 5432148 | 5438264 | 5432148 | ID=Msa0051340-mRNA-1;Parent=Msa0051340;Name=Msa0051340-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|5|0|478 |
| chr1_2 | exon | 5438148 | 5438264 | 5438148 | ID=Msa0051340-mRNA-1:exon:1636;Parent=Msa0051340-mRNA-1 |
| chr1_2 | exon | 5436430 | 5436900 | 5436430 | ID=Msa0051340-mRNA-1:exon:1635;Parent=Msa0051340-mRNA-1 |
| chr1_2 | exon | 5435324 | 5435777 | 5435324 | ID=Msa0051340-mRNA-1:exon:1634;Parent=Msa0051340-mRNA-1 |
| chr1_2 | exon | 5433111 | 5433235 | 5433111 | ID=Msa0051340-mRNA-1:exon:1633;Parent=Msa0051340-mRNA-1 |
| chr1_2 | exon | 5432148 | 5432417 | 5432148 | ID=Msa0051340-mRNA-1:exon:1632;Parent=Msa0051340-mRNA-1 |
| chr1_2 | CDS | 5438148 | 5438264 | 5438148 | ID=Msa0051340-mRNA-1:cds;Parent=Msa0051340-mRNA-1 |
| chr1_2 | CDS | 5436430 | 5436900 | 5436430 | ID=Msa0051340-mRNA-1:cds;Parent=Msa0051340-mRNA-1 |
| chr1_2 | CDS | 5435324 | 5435777 | 5435324 | ID=Msa0051340-mRNA-1:cds;Parent=Msa0051340-mRNA-1 |
| chr1_2 | CDS | 5433111 | 5433235 | 5433111 | ID=Msa0051340-mRNA-1:cds;Parent=Msa0051340-mRNA-1 |
| chr1_2 | CDS | 5432148 | 5432417 | 5432148 | ID=Msa0051340-mRNA-1:cds;Parent=Msa0051340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
