AlfalfaGEDB | Msa0052290

M. sativa cultivar zhongmu-4 / Msa0052290

KEGG: -
GO: GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052290	XP_003589071.2	90.935	353	27	3	1	352	1	349	0.0	596

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052290	sp\|Q7XHI9\|BH084_ARATH	86.316	95	13	0	271	365	231	325	6.82e-53	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052290	G7ICC1	90.935	353	27	3	1	352	1	349	0.0	596

TFs/TRs:

Gene ID	Type	Classification
Msa0052290	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052290	MtrunA17_Chr1g0152651	90.935	353	27	3	1	352	1	349	0.0	596
Msa0052290	MtrunA17_Chr3g0134741	49.474	380	120	12	1	368	1	320	7.20e-97	291
Msa0052290	MtrunA17_Chr5g0393721	52.821	195	78	5	179	363	120	310	3.75e-51	173
Msa0052290	MtrunA17_Chr1g0207301	50.532	188	74	4	189	363	193	374	1.85e-48	168
Msa0052290	MtrunA17_Chr1g0207311	51.124	178	81	3	190	365	111	284	5.62e-47	161
Msa0052290	MtrunA17_Chr5g0435021	65.000	60	21	0	286	345	227	286	1.50e-22	96.7
Msa0052290	MtrunA17_Chr4g0074161	52.564	78	37	0	263	340	192	269	1.08e-19	89.7
Msa0052290	MtrunA17_Chr8g0384141	66.071	56	19	0	286	341	123	178	7.57e-19	85.5
Msa0052290	MtrunA17_Chr3g0134001	62.963	54	20	0	286	339	180	233	6.65e-18	82.8
Msa0052290	MtrunA17_Chr7g0243041	56.364	55	24	0	284	338	33	87	6.81e-17	77.0
Msa0052290	MtrunA17_Chr1g0190731	56.923	65	28	0	276	340	192	256	8.09e-17	80.9
Msa0052290	MtrunA17_Chr4g0035101	40.517	116	62	3	230	340	94	207	3.68e-15	75.9
Msa0052290	MtrunA17_Chr4g0014771	57.576	66	27	1	276	340	117	182	2.93e-14	70.9
Msa0052290	MtrunA17_Chr3g0144641	38.136	118	67	3	226	340	141	255	7.79e-14	72.4
Msa0052290	MtrunA17_Chr5g0415291	34.307	137	70	3	224	340	40	176	4.30e-13	68.2
Msa0052290	MtrunA17_Chr1g0153241	35.354	99	59	1	261	354	64	162	6.23e-13	68.2
Msa0052290	MtrunA17_Chr5g0421111	35.915	142	75	4	215	340	288	429	8.96e-13	69.3
Msa0052290	MtrunA17_Chr6g0484271	50.769	65	31	1	277	340	155	219	1.16e-12	67.8
Msa0052290	MtrunA17_Chr8g0365941	34.247	146	81	4	201	340	233	369	1.23e-12	68.9
Msa0052290	MtrunA17_Chr8g0339091	52.308	65	30	1	277	340	291	355	1.33e-12	68.9
Msa0052290	MtrunA17_Chr1g0193321	45.455	66	36	0	275	340	460	525	1.43e-12	68.9
Msa0052290	MtrunA17_Chr7g0234761	53.125	64	29	1	278	340	318	381	1.56e-12	68.6
Msa0052290	MtrunA17_Chr1g0152131	50.769	65	31	1	277	340	260	324	1.97e-12	68.2
Msa0052290	MtrunA17_Chr8g0363921	49.231	65	32	1	277	340	151	215	1.99e-12	67.0
Msa0052290	MtrunA17_Chr1g0174271	54.545	66	29	1	276	340	297	362	2.93e-12	67.4
Msa0052290	MtrunA17_Chr3g0095391	36.364	99	50	3	279	369	311	404	2.94e-12	67.8
Msa0052290	MtrunA17_Chr1g0182791	39.506	81	47	1	275	355	315	393	3.31e-12	67.8
Msa0052290	MtrunA17_Chr3g0131771	52.308	65	30	1	277	340	147	211	6.22e-12	66.2
Msa0052290	MtrunA17_Chr4g0032951	53.030	66	30	1	276	340	354	419	6.81e-12	66.6
Msa0052290	MtrunA17_Chr8g0385911	49.231	65	32	1	277	340	145	209	1.43e-11	65.1
Msa0052290	MtrunA17_Chr7g0258181	53.846	65	29	1	278	341	244	308	1.91e-11	64.3
Msa0052290	MtrunA17_Chr1g0213791	50.000	68	33	1	276	342	264	331	2.28e-11	64.3
Msa0052290	MtrunA17_Chr5g0402031	42.188	64	37	0	290	353	118	181	2.70e-11	64.3
Msa0052290	MtrunA17_Chr7g0258161	42.308	78	44	1	264	340	160	237	6.19e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052290	AT2G14760.1	86.316	95	13	0	271	365	231	325	6.94e-54	181
Msa0052290	AT1G27740.1	63.514	148	45	3	220	367	119	257	8.46e-54	178
Msa0052290	AT4G33880.1	79.612	103	21	0	258	360	247	349	4.03e-53	179
Msa0052290	AT2G14760.3	75.926	108	13	1	271	365	231	338	3.64e-50	171
Msa0052290	AT5G43175.1	56.463	147	63	1	221	367	77	222	1.40e-46	159
Msa0052290	AT1G66470.1	54.255	94	38	2	253	345	174	263	5.58e-25	103
Msa0052290	AT5G37800.1	56.667	90	34	2	257	345	184	269	7.90e-25	103
Msa0052290	AT2G24260.2	56.410	78	31	1	266	340	21	98	9.51e-21	90.5
Msa0052290	AT4G30980.1	46.465	99	47	2	244	340	99	193	1.49e-20	91.3
Msa0052290	AT4G30980.2	46.465	99	47	2	244	340	147	241	2.15e-20	91.7
Msa0052290	AT2G24260.1	56.410	78	31	1	266	340	124	201	2.71e-20	91.3
Msa0052290	AT3G21330.1	62.500	56	21	0	284	339	276	331	6.48e-18	84.7
Msa0052290	AT5G58010.1	56.923	65	28	0	276	340	98	162	1.33e-17	82.8
Msa0052290	AT5G01305.1	51.515	66	29	1	274	336	31	96	9.20e-17	77.8
Msa0052290	AT4G00120.1	46.970	66	34	1	286	351	121	185	9.54e-16	75.5
Msa0052290	AT5G50915.1	51.724	87	38	4	278	361	137	222	4.37e-15	75.5
Msa0052290	AT5G50915.2	51.724	87	38	4	278	361	137	222	4.37e-15	75.5
Msa0052290	AT5G50915.3	51.724	87	38	4	278	361	137	222	4.39e-15	75.1
Msa0052290	AT5G50915.4	51.724	87	38	4	278	361	137	222	4.39e-15	75.1
Msa0052290	AT1G18400.2	53.846	65	29	1	277	340	145	209	6.73e-14	71.2
Msa0052290	AT1G18400.1	54.688	64	28	1	278	340	146	209	1.19e-13	70.9
Msa0052290	AT2G18300.2	31.875	160	92	4	185	340	103	249	1.75e-13	71.2
Msa0052290	AT2G18300.1	31.875	160	92	4	185	340	103	249	2.00e-13	70.9
Msa0052290	AT1G26260.4	36.424	151	86	4	195	340	142	287	2.16e-13	71.2
Msa0052290	AT1G26260.1	36.424	151	86	4	195	340	142	287	2.16e-13	71.2
Msa0052290	AT1G26260.6	36.424	151	86	4	195	340	142	287	2.16e-13	71.2
Msa0052290	AT1G26260.2	36.424	151	86	4	195	340	142	287	2.16e-13	71.2
Msa0052290	AT1G26260.5	36.424	151	86	4	195	340	120	265	2.17e-13	71.2
Msa0052290	AT1G26260.3	36.364	132	74	3	212	340	112	236	2.17e-13	70.9
Msa0052290	AT1G35460.1	54.545	66	29	1	276	340	180	245	2.33e-13	69.7
Msa0052290	AT2G18300.3	31.875	160	92	4	185	340	103	249	2.75e-13	70.9
Msa0052290	AT1G25330.1	46.341	82	43	1	277	357	104	185	4.19e-13	68.6
Msa0052290	AT3G07340.2	34.337	166	83	5	189	340	169	322	4.20e-13	70.5
Msa0052290	AT4G09180.1	52.941	68	31	1	276	342	183	250	4.39e-13	68.9
Msa0052290	AT1G73830.2	40.187	107	60	2	247	352	117	220	4.71e-13	68.9
Msa0052290	AT3G07340.1	34.337	166	83	5	189	340	169	322	4.74e-13	70.5
Msa0052290	AT1G73830.1	40.187	107	60	2	247	352	117	220	4.77e-13	68.9
Msa0052290	AT2G42280.1	55.385	65	28	1	276	339	278	342	2.21e-12	68.2
Msa0052290	AT1G59640.1	49.231	65	32	1	277	340	136	200	2.60e-12	67.0
Msa0052290	AT3G23690.1	37.168	113	54	2	245	340	143	255	2.71e-12	67.8
Msa0052290	AT1G09530.3	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G09530.2	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G09530.5	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G09530.1	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G09530.4	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G09530.6	37.864	103	58	2	253	349	307	409	2.95e-12	68.2
Msa0052290	AT1G51140.1	52.308	65	30	1	276	339	303	367	3.78e-12	67.4
Msa0052290	AT5G48560.1	52.308	65	30	1	277	340	301	365	3.99e-12	67.8
Msa0052290	AT5G48560.2	53.125	64	29	1	278	340	302	365	4.35e-12	67.8
Msa0052290	AT1G10120.2	51.562	64	30	1	278	340	207	270	5.34e-12	67.0
Msa0052290	AT1G10120.1	51.562	64	30	1	278	340	207	270	5.34e-12	67.0
Msa0052290	AT4G34530.1	50.769	65	31	1	277	340	172	236	5.39e-12	66.6
Msa0052290	AT1G59640.2	49.231	65	32	1	277	340	136	200	7.17e-12	66.2
Msa0052290	AT4G00050.2	41.463	82	43	2	263	344	96	172	1.10e-11	65.5
Msa0052290	AT2G42280.3	54.688	64	28	1	276	338	278	341	1.40e-11	65.5
Msa0052290	AT1G68920.3	50.769	65	31	1	277	340	302	366	1.61e-11	65.9
Msa0052290	AT1G68920.1	50.769	65	31	1	277	340	303	367	1.62e-11	65.9
Msa0052290	AT1G68920.4	50.769	65	31	1	277	340	303	367	1.62e-11	65.9
Msa0052290	AT1G68920.2	50.769	65	31	1	277	340	303	367	1.62e-11	65.9
Msa0052290	AT4G00050.1	41.463	82	43	2	263	344	198	274	2.16e-11	65.1
Msa0052290	AT4G00050.3	41.463	82	43	2	263	344	198	274	2.21e-11	65.1
Msa0052290	AT2G20180.4	46.875	64	34	0	277	340	278	341	3.57e-11	64.7
Msa0052290	AT2G20180.6	46.875	64	34	0	277	340	278	341	3.57e-11	64.7
Msa0052290	AT2G20180.2	46.875	64	34	0	277	340	278	341	3.57e-11	64.7
Msa0052290	AT2G20180.3	46.875	64	34	0	277	340	278	341	3.57e-11	64.7
Msa0052290	AT4G36540.1	47.692	65	33	1	277	340	141	205	3.64e-11	63.9
Msa0052290	AT4G36540.2	47.692	65	33	1	277	340	141	205	3.65e-11	63.9
Msa0052290	AT2G20180.7	46.875	64	34	0	277	340	207	270	4.05e-11	64.3
Msa0052290	AT2G20180.1	46.875	64	34	0	277	340	207	270	4.05e-11	64.3
Msa0052290	AT2G20180.5	46.875	64	34	0	277	340	207	270	4.05e-11	64.3
Msa0052290	AT4G28790.1	39.560	91	52	2	264	354	260	347	4.09e-11	64.3
Msa0052290	AT2G46970.1	32.967	91	56	1	276	361	222	312	5.60e-11	63.9
Msa0052290	AT2G46970.2	32.967	91	56	1	276	361	191	281	5.67e-11	63.9
Msa0052290	AT2G46970.3	32.967	91	56	1	276	361	200	290	6.46e-11	63.9
Msa0052290	AT4G36930.1	39.189	74	45	0	284	357	198	271	6.81e-11	63.5

Find 51 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCCATTACAATCTCATTA+AGG	0.173245	1_2:-6507154	None:intergenic
TGCTAGTGATGATCATATTT+TGG	0.194383	1_2:+6507202	Msa0052290:CDS
ATCAAAATTCACTTCTTCTT+GGG	0.265690	1_2:+6506853	Msa0052290:CDS
GATCAAAATTCACTTCTTCT+TGG	0.270911	1_2:+6506852	Msa0052290:CDS
GAGAAATATAGTTAGAGTTT+TGG	0.293615	1_2:-6506974	None:intergenic
TACCCTTGCATATAGACTTT+GGG	0.321694	1_2:-6507762	None:intergenic
AAGAAATCCCATTCTCCTTC+AGG	0.327986	1_2:-6506777	None:intergenic
TTCCATTACAATCTCATTAA+GGG	0.348435	1_2:-6507153	None:intergenic
TATGCACCACTTGCTTATAA+TGG	0.352026	1_2:+6508314	Msa0052290:CDS
TGGTTATAATACTCAAATAA+TGG	0.360333	1_2:+6507232	Msa0052290:CDS
ATTAATAATAGAGGATCAAA+TGG	0.401696	1_2:+6507623	Msa0052290:CDS
CCTTCAGGGAAAGTACCTAT+AGG	0.408509	1_2:-6506762	None:intergenic
GGAACTACTCTCAACTCAAA+TGG	0.413988	1_2:+6507704	Msa0052290:CDS
TTACCCTTGCATATAGACTT+TGG	0.415798	1_2:-6507763	None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG	0.424302	1_2:+6506770	Msa0052290:CDS
TGCTTGGTGTGAAGATCAAC+AGG	0.425932	1_2:-6507257	None:intergenic
TTATTTACTAGTACTTGATC+AGG	0.442578	1_2:-6507065	None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG	0.443724	1_2:+6507282	Msa0052290:CDS
AATATTACCTTTGTTCCGTT+CGG	0.447590	1_2:-6507955	None:intergenic
CTGCATTTGCAACTCATGCT+TGG	0.451532	1_2:-6507273	None:intergenic
ATCCCTTAATGAGATTGTAA+TGG	0.463322	1_2:+6507151	Msa0052290:CDS
ACAGAAGAGATTAATAATAG+AGG	0.477922	1_2:+6507614	Msa0052290:CDS
GAACTACTCTCAACTCAAAT+GGG	0.480885	1_2:+6507705	Msa0052290:CDS
GCTTATAATGGACTTGACCT+TGG	0.488445	1_2:+6508326	Msa0052290:CDS
AATGCTTCTCAAGAAAATAG+TGG	0.493032	1_2:+6507680	Msa0052290:CDS
TCAAAATTCACTTCTTCTTG+GGG	0.493998	1_2:+6506854	Msa0052290:CDS
GTACTTTCCCTGAAGGAGAA+TGG	0.496433	1_2:+6506769	Msa0052290:CDS
TTATAGAATATGGAACCTAT+AGG	0.524720	1_2:+6506747	None:intergenic
ACCCTTGCATATAGACTTTG+GGG	0.534775	1_2:-6507761	None:intergenic
ATCCCCAAAGTCTATATGCA+AGG	0.542852	1_2:+6507759	Msa0052290:CDS
AGAAATCCCATTCTCCTTCA+GGG	0.544452	1_2:-6506776	None:intergenic
ATTTCAATTATATAGGGCCA+AGG	0.547971	1_2:+6507530	Msa0052290:intron
TGAGGTTGAGATTGAGTCCA+AGG	0.556070	1_2:-6508343	None:intergenic
GAAAGTTGCTAACAATGAAG+AGG	0.569015	1_2:+6507586	Msa0052290:CDS
ATTACAATCTCATTAAGGGA+TGG	0.572980	1_2:-6507149	None:intergenic
GAAACTTGATGTGATAGAAG+TGG	0.575721	1_2:+6507304	Msa0052290:CDS
TATAAGTACAATGCTTGAAG+AGG	0.587398	1_2:+6508097	Msa0052290:CDS
TATATCTTTGAAGCTCATAG+TGG	0.590762	1_2:-6508377	None:intergenic
TCCCCAAAGTCTATATGCAA+GGG	0.597305	1_2:+6507760	Msa0052290:CDS
TCTTGTACCGAACGGAACAA+AGG	0.602216	1_2:+6507948	Msa0052290:CDS
GAAAATGATGCATTGAACAA+TGG	0.611957	1_2:+6506876	Msa0052290:CDS
CCTATAGGTACTTTCCCTGA+AGG	0.620831	1_2:+6506762	Msa0052290:CDS
AATTTCAGCAGTGCAAAATG+TGG	0.624595	1_2:-6506907	None:intergenic
CTCTAGTAGTAACATTTCTG+AGG	0.625639	1_2:+6507652	Msa0052290:CDS
TTACAAAATCTTGTACCGAA+CGG	0.632772	1_2:+6507940	Msa0052290:CDS
AAGGATGCATGAAAATTGCA+AGG	0.634976	1_2:+6507549	Msa0052290:CDS
ACTTGATGTGATAGAAGTGG+AGG	0.635683	1_2:+6507307	Msa0052290:CDS
GGGAAGACAAGAGCTAGTAG+AGG	0.635890	1_2:+6507725	Msa0052290:CDS
TCAAGTCCATTATAAGCAAG+TGG	0.638289	1_2:-6508320	None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG	0.669375	1_2:+6507683	Msa0052290:CDS
ATAGTGGTAGAGAACTGTTG+AGG	0.720764	1_2:-6508361	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATGATACTTTTTTTATT+TGG	+	chr1_2:6507872-6507891	Msa0052290:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	chr1_2:6507992-6508011	Msa0052290:intron	10.0%
!!!	TTTATGATACTTTTTTTATT+TGG	+	chr1_2:6507872-6507891	Msa0052290:intron	10.0%
!!!	TTTTGTTTTAATATTGAAAT+TGG	+	chr1_2:6507992-6508011	Msa0052290:intron	10.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	chr1_2:6507232-6507251	Msa0052290:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	chr1_2:6507335-6507354	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	chr1_2:6507524-6507543	Msa0052290:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	chr1_2:6507623-6507642	Msa0052290:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	chr1_2:6507995-6508014	Msa0052290:intron	20.0%
!!	TGGTTATAATACTCAAATAA+TGG	+	chr1_2:6507232-6507251	Msa0052290:CDS	20.0%
!!!	TTGTTAATTTTTTCTTCAAC+AGG	-	chr1_2:6507335-6507354	None:intergenic	20.0%
!!!	GTCGTTATTTCAATTATATA+GGG	+	chr1_2:6507524-6507543	Msa0052290:intron	20.0%
!!	ATTAATAATAGAGGATCAAA+TGG	+	chr1_2:6507623-6507642	Msa0052290:CDS	20.0%
!!!	TGTTTTAATATTGAAATTGG+TGG	+	chr1_2:6507995-6508014	Msa0052290:intron	20.0%
!	ATCAAAATTCACTTCTTCTT+GGG	+	chr1_2:6506853-6506872	Msa0052290:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	chr1_2:6506977-6506996	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	chr1_2:6507068-6507087	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	chr1_2:6507100-6507119	Msa0052290:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	chr1_2:6507156-6507175	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	chr1_2:6507212-6507231	Msa0052290:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	chr1_2:6507418-6507437	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	chr1_2:6507486-6507505	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	chr1_2:6507523-6507542	Msa0052290:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	chr1_2:6507614-6507633	Msa0052290:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	chr1_2:6508056-6508075	Msa0052290:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	chr1_2:6508060-6508079	Msa0052290:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	chr1_2:6508136-6508155	Msa0052290:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	chr1_2:6508164-6508183	Msa0052290:intron	25.0%
!	ATCAAAATTCACTTCTTCTT+GGG	+	chr1_2:6506853-6506872	Msa0052290:CDS	25.0%
!!	GAGAAATATAGTTAGAGTTT+TGG	-	chr1_2:6506977-6506996	None:intergenic	25.0%
!	TTATTTACTAGTACTTGATC+AGG	-	chr1_2:6507068-6507087	None:intergenic	25.0%
!!	TATATCCAATGATTTTTGCA+TGG	+	chr1_2:6507100-6507119	Msa0052290:CDS	25.0%
!	TTCCATTACAATCTCATTAA+GGG	-	chr1_2:6507156-6507175	None:intergenic	25.0%
!!!	GATCATATTTTGGAGAAAAA+TGG	+	chr1_2:6507212-6507231	Msa0052290:CDS	25.0%
!!	ATTTTGTTGCTAGTAAGATT+AGG	-	chr1_2:6507418-6507437	None:intergenic	25.0%
!	ATAAAATTGATCACCATATC+CGG	-	chr1_2:6507486-6507505	None:intergenic	25.0%
!!	CGTCGTTATTTCAATTATAT+AGG	+	chr1_2:6507523-6507542	Msa0052290:intron	25.0%
!	ACAGAAGAGATTAATAATAG+AGG	+	chr1_2:6507614-6507633	Msa0052290:CDS	25.0%
!	GTACAAGAGAATTAATTTCA+TGG	+	chr1_2:6508056-6508075	Msa0052290:intron	25.0%
!	AAGAGAATTAATTTCATGGA+TGG	+	chr1_2:6508060-6508079	Msa0052290:intron	25.0%
!!	ATTTTTACAGACTCAAATCA+AGG	+	chr1_2:6508136-6508155	Msa0052290:CDS	25.0%
!	ACAATAGGAGACATTATATA+TGG	+	chr1_2:6508164-6508183	Msa0052290:intron	25.0%
	GATCAAAATTCACTTCTTCT+TGG	+	chr1_2:6506852-6506871	Msa0052290:CDS	30.0%
	TCAAAATTCACTTCTTCTTG+GGG	+	chr1_2:6506854-6506873	Msa0052290:CDS	30.0%
	GAAAATGATGCATTGAACAA+TGG	+	chr1_2:6506876-6506895	Msa0052290:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	chr1_2:6507152-6507171	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	chr1_2:6507151-6507170	Msa0052290:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	chr1_2:6507157-6507176	None:intergenic	30.0%
!	TGCTAGTGATGATCATATTT+TGG	+	chr1_2:6507202-6507221	Msa0052290:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	chr1_2:6507530-6507549	Msa0052290:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	chr1_2:6507680-6507699	Msa0052290:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	chr1_2:6507940-6507959	Msa0052290:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	chr1_2:6507958-6507977	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	chr1_2:6508020-6508039	Msa0052290:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	chr1_2:6508097-6508116	Msa0052290:CDS	30.0%
	GATCAAAATTCACTTCTTCT+TGG	+	chr1_2:6506852-6506871	Msa0052290:CDS	30.0%
	TCAAAATTCACTTCTTCTTG+GGG	+	chr1_2:6506854-6506873	Msa0052290:CDS	30.0%
	GAAAATGATGCATTGAACAA+TGG	+	chr1_2:6506876-6506895	Msa0052290:CDS	30.0%
	ATTACAATCTCATTAAGGGA+TGG	-	chr1_2:6507152-6507171	None:intergenic	30.0%
	ATCCCTTAATGAGATTGTAA+TGG	+	chr1_2:6507151-6507170	Msa0052290:CDS	30.0%
	CTTCCATTACAATCTCATTA+AGG	-	chr1_2:6507157-6507176	None:intergenic	30.0%
!	TGCTAGTGATGATCATATTT+TGG	+	chr1_2:6507202-6507221	Msa0052290:CDS	30.0%
	ATTTCAATTATATAGGGCCA+AGG	+	chr1_2:6507530-6507549	Msa0052290:intron	30.0%
	AATGCTTCTCAAGAAAATAG+TGG	+	chr1_2:6507680-6507699	Msa0052290:CDS	30.0%
	TTACAAAATCTTGTACCGAA+CGG	+	chr1_2:6507940-6507959	Msa0052290:CDS	30.0%
	AATATTACCTTTGTTCCGTT+CGG	-	chr1_2:6507958-6507977	None:intergenic	30.0%
!	TTTTCATGCGACAAATTCAT+TGG	+	chr1_2:6508020-6508039	Msa0052290:intron	30.0%
	TATAAGTACAATGCTTGAAG+AGG	+	chr1_2:6508097-6508116	Msa0052290:CDS	30.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	chr1_2:6506910-6506929	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	chr1_2:6506909-6506928	Msa0052290:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	chr1_2:6507108-6507127	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	chr1_2:6507304-6507323	Msa0052290:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	chr1_2:6507371-6507390	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	chr1_2:6507383-6507402	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	chr1_2:6507452-6507471	None:intergenic	35.0%
	GCATCTCTAACACTAAAAAG+CGG	-	chr1_2:6507464-6507483	None:intergenic	35.0%
!!	CTTTTTAGTGTTAGAGATGC+CGG	+	chr1_2:6507464-6507483	Msa0052290:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	chr1_2:6507550-6507569	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	chr1_2:6507549-6507568	Msa0052290:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	chr1_2:6507586-6507605	Msa0052290:CDS	35.0%
	CTCTAGTAGTAACATTTCTG+AGG	+	chr1_2:6507652-6507671	Msa0052290:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	chr1_2:6507705-6507724	Msa0052290:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	chr1_2:6507765-6507784	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	chr1_2:6507766-6507785	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	chr1_2:6508070-6508089	Msa0052290:intron	35.0%
	CAAATCAAGGTAAGCACAAT+AGG	+	chr1_2:6508149-6508168	Msa0052290:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	chr1_2:6508288-6508307	Msa0052290:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	chr1_2:6508314-6508333	Msa0052290:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	chr1_2:6508323-6508342	None:intergenic	35.0%
	AATTTCAGCAGTGCAAAATG+TGG	-	chr1_2:6506910-6506929	None:intergenic	35.0%
!	ACATTTTGCACTGCTGAAAT+TGG	+	chr1_2:6506909-6506928	Msa0052290:CDS	35.0%
	CTCATCCATGCAAAAATCAT+TGG	-	chr1_2:6507108-6507127	None:intergenic	35.0%
	GAAACTTGATGTGATAGAAG+TGG	+	chr1_2:6507304-6507323	Msa0052290:CDS	35.0%
!!!	GAAATGCGAGGTTTTTTCTT+CGG	-	chr1_2:6507371-6507390	None:intergenic	35.0%
!!!	CTTACATCTTTTGAAATGCG+AGG	-	chr1_2:6507383-6507402	None:intergenic	35.0%
	CTAAAAAGCGGAATTAGAGA+CGG	-	chr1_2:6507452-6507471	None:intergenic	35.0%
	GCATCTCTAACACTAAAAAG+CGG	-	chr1_2:6507464-6507483	None:intergenic	35.0%
!!	CTTTTTAGTGTTAGAGATGC+CGG	+	chr1_2:6507464-6507483	Msa0052290:intron	35.0%
!	TTGCAATTTTCATGCATCCT+TGG	-	chr1_2:6507550-6507569	None:intergenic	35.0%
	AAGGATGCATGAAAATTGCA+AGG	+	chr1_2:6507549-6507568	Msa0052290:CDS	35.0%
	GAAAGTTGCTAACAATGAAG+AGG	+	chr1_2:6507586-6507605	Msa0052290:CDS	35.0%
	CTCTAGTAGTAACATTTCTG+AGG	+	chr1_2:6507652-6507671	Msa0052290:CDS	35.0%
	GAACTACTCTCAACTCAAAT+GGG	+	chr1_2:6507705-6507724	Msa0052290:CDS	35.0%
	TACCCTTGCATATAGACTTT+GGG	-	chr1_2:6507765-6507784	None:intergenic	35.0%
	TTACCCTTGCATATAGACTT+TGG	-	chr1_2:6507766-6507785	None:intergenic	35.0%
	ATTTCATGGATGGTTTATGC+AGG	+	chr1_2:6508070-6508089	Msa0052290:intron	35.0%
	CAAATCAAGGTAAGCACAAT+AGG	+	chr1_2:6508149-6508168	Msa0052290:intron	35.0%
!!	TTTTGAGCTCTGATGATATG+TGG	+	chr1_2:6508288-6508307	Msa0052290:CDS	35.0%
	TATGCACCACTTGCTTATAA+TGG	+	chr1_2:6508314-6508333	Msa0052290:CDS	35.0%
	TCAAGTCCATTATAAGCAAG+TGG	-	chr1_2:6508323-6508342	None:intergenic	35.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	chr1_2:6506770-6506789	Msa0052290:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	chr1_2:6506779-6506798	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	chr1_2:6506780-6506799	None:intergenic	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	chr1_2:6507282-6507301	Msa0052290:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	chr1_2:6507307-6507326	Msa0052290:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	chr1_2:6507683-6507702	Msa0052290:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	chr1_2:6507704-6507723	Msa0052290:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	chr1_2:6507759-6507778	Msa0052290:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	chr1_2:6507760-6507779	Msa0052290:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	chr1_2:6507764-6507783	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	chr1_2:6508326-6508345	Msa0052290:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	chr1_2:6508364-6508383	None:intergenic	40.0%
	TACTTTCCCTGAAGGAGAAT+GGG	+	chr1_2:6506770-6506789	Msa0052290:CDS	40.0%
	AGAAATCCCATTCTCCTTCA+GGG	-	chr1_2:6506779-6506798	None:intergenic	40.0%
	AAGAAATCCCATTCTCCTTC+AGG	-	chr1_2:6506780-6506799	None:intergenic	40.0%
	AGTTGCAAATGCAGCTCAAA+AGG	+	chr1_2:6507282-6507301	Msa0052290:CDS	40.0%
	ACTTGATGTGATAGAAGTGG+AGG	+	chr1_2:6507307-6507326	Msa0052290:CDS	40.0%
	GCTTCTCAAGAAAATAGTGG+AGG	+	chr1_2:6507683-6507702	Msa0052290:CDS	40.0%
	GGAACTACTCTCAACTCAAA+TGG	+	chr1_2:6507704-6507723	Msa0052290:CDS	40.0%
	ATCCCCAAAGTCTATATGCA+AGG	+	chr1_2:6507759-6507778	Msa0052290:CDS	40.0%
	TCCCCAAAGTCTATATGCAA+GGG	+	chr1_2:6507760-6507779	Msa0052290:CDS	40.0%
	ACCCTTGCATATAGACTTTG+GGG	-	chr1_2:6507764-6507783	None:intergenic	40.0%
!!	GCTTATAATGGACTTGACCT+TGG	+	chr1_2:6508326-6508345	Msa0052290:CDS	40.0%
	ATAGTGGTAGAGAACTGTTG+AGG	-	chr1_2:6508364-6508383	None:intergenic	40.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	chr1_2:6506765-6506784	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	chr1_2:6506762-6506781	Msa0052290:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	chr1_2:6506769-6506788	Msa0052290:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	chr1_2:6507260-6507279	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	chr1_2:6507276-6507295	None:intergenic	45.0%
	AGTGTTAGAGATGCCGGATA+TGG	+	chr1_2:6507470-6507489	Msa0052290:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	chr1_2:6507948-6507967	Msa0052290:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	chr1_2:6508346-6508365	None:intergenic	45.0%
!!	CCTTCAGGGAAAGTACCTAT+AGG	-	chr1_2:6506765-6506784	None:intergenic	45.0%
	CCTATAGGTACTTTCCCTGA+AGG	+	chr1_2:6506762-6506781	Msa0052290:CDS	45.0%
	GTACTTTCCCTGAAGGAGAA+TGG	+	chr1_2:6506769-6506788	Msa0052290:CDS	45.0%
!!	TGCTTGGTGTGAAGATCAAC+AGG	-	chr1_2:6507260-6507279	None:intergenic	45.0%
	CTGCATTTGCAACTCATGCT+TGG	-	chr1_2:6507276-6507295	None:intergenic	45.0%
	AGTGTTAGAGATGCCGGATA+TGG	+	chr1_2:6507470-6507489	Msa0052290:intron	45.0%
	TCTTGTACCGAACGGAACAA+AGG	+	chr1_2:6507948-6507967	Msa0052290:CDS	45.0%
	TGAGGTTGAGATTGAGTCCA+AGG	-	chr1_2:6508346-6508365	None:intergenic	45.0%
!!	TATCTTATATTAAAAAAAAA+AGG	-	chr1_2:6508207-6508226	None:intergenic	5.0%
!!	TATCTTATATTAAAAAAAAA+AGG	-	chr1_2:6508207-6508226	None:intergenic	5.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	chr1_2:6507725-6507744	Msa0052290:CDS	50.0%
	GGGAAGACAAGAGCTAGTAG+AGG	+	chr1_2:6507725-6507744	Msa0052290:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	6506756	6508385	6506756	ID=Msa0052290;Name=Msa0052290
chr1_2	mRNA	6506756	6508385	6506756	ID=Msa0052290-mRNA-1;Parent=Msa0052290;Name=Msa0052290-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|5\|0\|369
chr1_2	exon	6506756	6507397	6506756	ID=Msa0052290-mRNA-1:exon:2109;Parent=Msa0052290-mRNA-1
chr1_2	exon	6507545	6507781	6507545	ID=Msa0052290-mRNA-1:exon:2110;Parent=Msa0052290-mRNA-1
chr1_2	exon	6507904	6507969	6507904	ID=Msa0052290-mRNA-1:exon:2111;Parent=Msa0052290-mRNA-1
chr1_2	exon	6508092	6508157	6508092	ID=Msa0052290-mRNA-1:exon:2112;Parent=Msa0052290-mRNA-1
chr1_2	exon	6508287	6508385	6508287	ID=Msa0052290-mRNA-1:exon:2113;Parent=Msa0052290-mRNA-1
chr1_2	CDS	6506756	6507397	6506756	ID=Msa0052290-mRNA-1:cds;Parent=Msa0052290-mRNA-1
chr1_2	CDS	6507545	6507781	6507545	ID=Msa0052290-mRNA-1:cds;Parent=Msa0052290-mRNA-1
chr1_2	CDS	6507904	6507969	6507904	ID=Msa0052290-mRNA-1:cds;Parent=Msa0052290-mRNA-1
chr1_2	CDS	6508092	6508157	6508092	ID=Msa0052290-mRNA-1:cds;Parent=Msa0052290-mRNA-1
chr1_2	CDS	6508287	6508385	6508287	ID=Msa0052290-mRNA-1:cds;Parent=Msa0052290-mRNA-1

Gene Sequence

>Msa0052290

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTATTCACAACAATTTCTTGATCAAAATTCACTTCTTCTTGGGGAAAATGATGCATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCTAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCGAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA

Protein sequence

>Msa0052290

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDALNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL*