AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054550 MtrunA17_Chr1g0156051 96.937 555 15 1 1 553 1 555 0.0 1098
Msa0054550 MtrunA17_Chr4g0036071 49.072 485 179 18 42 504 41 479 1.22e-110 339
Msa0054550 MtrunA17_Chr6g0463571 47.964 221 94 8 301 513 74 281 3.69e-44 159
Msa0054550 MtrunA17_Chr2g0329551 60.000 140 53 2 340 477 175 313 2.98e-41 154
Msa0054550 MtrunA17_Chr3g0128781 54.777 157 67 2 368 521 91 246 2.14e-40 149
Msa0054550 MtrunA17_Chr5g0432701 56.944 144 52 2 340 483 124 257 2.30e-39 147
Msa0054550 MtrunA17_Chr3g0107491 52.486 181 78 4 340 518 138 312 3.01e-39 147
Msa0054550 MtrunA17_Chr2g0316551 51.546 97 43 2 383 477 206 300 8.00e-19 88.2
Msa0054550 MtrunA17_Chr4g0040891 50.000 98 45 2 384 479 193 288 2.37e-18 86.3
Msa0054550 MtrunA17_Chr2g0325131 51.020 98 44 2 384 479 190 285 2.50e-18 86.7
Msa0054550 MtrunA17_Chr2g0306581 71.429 49 14 0 373 421 1 49 3.26e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054550 AT4G38900.2 44.465 533 202 24 19 505 27 511 2.14e-99 311
Msa0054550 AT4G38900.3 44.465 533 202 24 19 505 27 511 2.14e-99 311
Msa0054550 AT4G38900.1 43.970 539 202 25 19 505 27 517 1.43e-96 305
Msa0054550 AT2G21230.4 41.649 461 207 15 79 510 74 501 2.14e-79 259
Msa0054550 AT2G21230.1 41.649 461 207 15 79 510 74 501 2.14e-79 259
Msa0054550 AT2G21230.3 40.899 467 208 16 79 510 74 507 3.43e-76 250
Msa0054550 AT2G21230.2 42.195 410 181 14 79 465 74 450 1.15e-71 237
Msa0054550 AT1G43700.1 47.549 204 87 6 300 483 89 292 2.61e-42 155
Msa0054550 AT2G31370.5 53.529 170 75 1 340 509 156 321 5.98e-41 152
Msa0054550 AT2G31370.2 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G31370.4 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G31370.1 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G31370.7 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G31370.3 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G31370.6 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0054550 AT2G40620.1 49.505 202 77 4 337 525 112 301 2.06e-40 150
Msa0054550 AT1G06070.1 56.494 154 56 3 334 477 150 302 7.37e-40 150
Msa0054550 AT1G06850.1 51.634 153 72 1 356 506 117 269 3.93e-38 143
Msa0054550 AT2G13150.1 36.788 193 111 5 298 488 71 254 1.01e-28 115
Msa0054550 AT2G12940.1 35.676 185 110 4 296 480 68 243 5.77e-28 114
Msa0054550 AT2G12900.1 38.760 129 71 1 357 477 80 208 4.56e-23 99.4
Msa0054550 AT1G06850.2 60.241 83 31 1 356 436 117 199 1.54e-21 94.0
Msa0054550 AT3G58120.1 51.546 97 43 2 385 479 202 296 7.56e-19 88.2
Msa0054550 AT2G42380.2 50.515 97 44 2 385 479 186 280 3.44e-18 86.3
Msa0054550 AT2G42380.5 51.190 84 37 2 385 466 186 267 9.90e-16 78.2
Msa0054550 AT3G58120.2 52.439 82 35 2 385 464 202 281 2.26e-15 77.4
Msa0054550 AT2G21235.1 32.995 197 90 5 382 542 356 546 4.78e-15 78.6
Msa0054550 AT2G42380.1 46.392 97 37 3 385 479 186 269 1.67e-12 68.9
Msa0054550 AT1G58110.1 43.158 95 49 1 383 477 232 321 7.55e-11 64.7
Msa0054550 AT1G58110.2 43.158 95 49 1 383 477 232 321 7.55e-11 64.7

Find 178 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTCCATGCTGATTTC+TGG 0.095023 1_2:+9250337 None:intergenic
TGAATTCTCTTCTAGGATTT+TGG 0.159961 1_2:-9250127 Msa0054550:intron
TTAGGTGATAAACTGGTATT+AGG 0.185148 1_2:+9251228 None:intergenic
ATTTGATTAATTTGATTAAT+AGG 0.196865 1_2:+9251309 None:intergenic
GTTTAGTGCTTACATGAATT+TGG 0.199161 1_2:-9250689 Msa0054550:CDS
GATCGTCGGAATTTGGTTTC+TGG 0.214069 1_2:-9250838 Msa0054550:CDS
ATGGACGATGGCTTGGATTT+TGG 0.220488 1_2:-9251027 Msa0054550:CDS
TGCATAATGTTTGCAGTAAA+TGG 0.227238 1_2:-9248517 Msa0054550:exon
TCTAGCAGTGATTCGCCTTT+AGG 0.230921 1_2:-9250922 Msa0054550:CDS
GAGATTGTGGAGGCATAAAT+TGG 0.250520 1_2:+9251187 None:intergenic
GGCATAGGATTCAATTGAAT+TGG 0.265815 1_2:+9251330 None:intergenic
GATGATACACACCTGTAATT+TGG 0.266445 1_2:+9249990 None:intergenic
CCTGAAAATCACAAAAGTTC+TGG 0.271067 1_2:-9251279 Msa0054550:CDS
ACTAAATATATTCTTTGAAT+TGG 0.283736 1_2:-9248448 Msa0054550:three_prime_UTR
GTCTGCCCTCTCAGGTCTTA+TGG 0.290824 1_2:-9248715 Msa0054550:CDS
TTTCATGTTAGTTTACCTTT+TGG 0.294896 1_2:-9248274 Msa0054550:three_prime_UTR
AATCACAAAAGTTCTGGTTT+TGG 0.303027 1_2:-9251273 Msa0054550:CDS
TGTCAGTGATCGTCGGAATT+TGG 0.310184 1_2:-9250845 Msa0054550:CDS
TTGGCTGCTGATGCTGCGCC+TGG 0.311111 1_2:+9248661 None:intergenic
CTAGCAGTGATTCGCCTTTA+GGG 0.324253 1_2:-9250921 Msa0054550:CDS
ATAGACAACACCTTCATAAA+TGG 0.326247 1_2:+9248171 None:intergenic
GATGAAATACATTTCTGAAT+TGG 0.329479 1_2:-9250067 Msa0054550:CDS
GACTGTGTTGATGGGTTTAG+AGG 0.332730 1_2:-9250763 Msa0054550:CDS
TACTCAGTTTACCAAATTAC+AGG 0.335238 1_2:-9250001 Msa0054550:intron
GATAAACTGGTATTAGGGTT+AGG 0.348576 1_2:+9251234 None:intergenic
TATTAATCAAATTAATCAAA+TGG 0.352253 1_2:-9251307 Msa0054550:CDS
CCAGAAATCAGCATGGAGTT+TGG 0.352422 1_2:-9250337 Msa0054550:CDS
CATCAATAATTTGCAGTTTG+AGG 0.353920 1_2:-9251500 Msa0054550:five_prime_UTR
ATACATCAGTTGGCCTATAT+AGG 0.356707 1_2:-9248379 Msa0054550:three_prime_UTR
GGGTTCGAAAGATGTTTCTA+TGG 0.361008 1_2:-9251046 Msa0054550:CDS
CAAATTGAGGCTTCAATCCT+TGG 0.361103 1_2:-9249813 Msa0054550:CDS
TACATCAGTTGGCCTATATA+GGG 0.365254 1_2:-9248378 Msa0054550:three_prime_UTR
GATAATGAACAGCCCTATAT+AGG 0.366574 1_2:+9248366 None:intergenic
ATATAAGCAATTGATGATAT+TGG 0.371773 1_2:-9248493 Msa0054550:three_prime_UTR
TTCGAACCCGATTCCGAAAA+GGG 0.372318 1_2:+9251060 None:intergenic
GGAGTCAAGAGGAGTTCTAA+TGG 0.374634 1_2:-9250508 Msa0054550:CDS
GCATAGGATTCAATTGAATT+GGG 0.375101 1_2:+9251331 None:intergenic
TAGTTTCTGTCTGAAGAGTT+TGG 0.377481 1_2:+9250034 None:intergenic
TGATGGTTTAGGTGATAAAC+TGG 0.388036 1_2:+9251221 None:intergenic
CACAATCTCAAACTCATTCC+AGG 0.390554 1_2:-9251173 Msa0054550:CDS
AAGGATAGGGACTGTGTTGA+TGG 0.391348 1_2:-9250772 Msa0054550:CDS
CTTCATTCTCCCATGTGTAC+TGG 0.391813 1_2:-9248306 Msa0054550:three_prime_UTR
TGGAAATTTCTAAGCTGGTT+TGG 0.392467 1_2:+9248642 None:intergenic
GGATAAGGAGATGATGGTTT+AGG 0.394908 1_2:+9251210 None:intergenic
GCCGATTCAGTTGGTGTTGA+AGG 0.397394 1_2:-9250791 Msa0054550:CDS
GGGTTTGAACTTACATGATA+AGG 0.398012 1_2:+9251081 None:intergenic
CGTGTAAATGTGAAAGGAAT+AGG 0.399807 1_2:-9250574 Msa0054550:CDS
TTCTTACCTCTTTGCACGCT+TGG 0.401343 1_2:+9250237 None:intergenic
ACAGGAGATGAAGAAAATAA+TGG 0.405735 1_2:-9250296 Msa0054550:CDS
TCTTACCTCTTTGCACGCTT+GGG 0.408680 1_2:+9250238 None:intergenic
TATTAATCAACAAATGTTCC+AGG 0.413163 1_2:-9248679 Msa0054550:CDS
GGTTTGAACTTACATGATAA+GGG 0.413641 1_2:+9251082 None:intergenic
AGATTGTGGAGGCATAAATT+GGG 0.419988 1_2:+9251188 None:intergenic
AGAGAATGATGGAGCTGAAA+TGG 0.422683 1_2:-9250719 Msa0054550:CDS
TGATTCGCCTTTAGGGATAT+CGG 0.426575 1_2:-9250914 Msa0054550:CDS
ATTAATCAAATTAATCAAAT+GGG 0.434941 1_2:-9251306 Msa0054550:CDS
TTTCGAACCCGATTCCGAAA+AGG 0.436816 1_2:+9251059 None:intergenic
ATTGTCTTCCGCCTCGTAAA+GGG 0.438192 1_2:-9250954 Msa0054550:CDS
CATAAGCTTCCTCCTTTACA+AGG 0.439342 1_2:-9250409 Msa0054550:CDS
TGCCATTCTGATGCTTCGAT+TGG 0.443341 1_2:+9248547 None:intergenic
TTTAGAGGAGAGAGTTTCGA+TGG 0.447218 1_2:-9250748 Msa0054550:CDS
TGTTTCTATGGACGATGGCT+TGG 0.448923 1_2:-9251034 Msa0054550:CDS
GAGGAGAGAGTTTCGATGGG+AGG 0.451918 1_2:-9250744 Msa0054550:CDS
GGCGGAGAGTCTGCCCTCTC+AGG 0.456637 1_2:-9248723 Msa0054550:CDS
GCCGCAAAACAGCGTCTCTC+AGG 0.456659 1_2:-9248619 Msa0054550:CDS
TAGGTGATAAACTGGTATTA+GGG 0.460276 1_2:+9251229 None:intergenic
GGAGGCATAAATTGGGGATA+AGG 0.460553 1_2:+9251195 None:intergenic
TTCAACCGTCTTCGAACCAC+TGG 0.466140 1_2:+9250621 None:intergenic
GATTATTTGCTTAATTATTG+TGG 0.467966 1_2:-9251457 Msa0054550:five_prime_UTR
TCCTTCAACACCAACTGAAT+CGG 0.468786 1_2:+9250790 None:intergenic
GCGGCTGGAAATTTCTAAGC+TGG 0.471848 1_2:+9248637 None:intergenic
CAGTTGGGACTGTTGTTCCA+AGG 0.474662 1_2:+9249796 None:intergenic
CATTGTCTTCCGCCTCGTAA+AGG 0.477811 1_2:-9250955 Msa0054550:CDS
CTACCATCCATTGAATTGCT+AGG 0.480737 1_2:+9250367 None:intergenic
ATTCTCTTCTTCACCACCGT+TGG 0.483471 1_2:-9251744 Msa0054550:five_prime_UTR
AATTGGGGATAAGGAGATGA+TGG 0.483937 1_2:+9251204 None:intergenic
ATAAACTGGTATTAGGGTTA+GGG 0.484174 1_2:+9251235 None:intergenic
TGTTAACTCTGTGCCTCAGC+TGG 0.484237 1_2:-9250887 Msa0054550:CDS
ATCAGCATGGAGTTTGGAAA+TGG 0.484264 1_2:-9250331 Msa0054550:CDS
CAATAATTAAGCAAATAATC+AGG 0.484866 1_2:+9251460 None:intergenic
TATATTCTTTGAATTGGAGC+TGG 0.486665 1_2:-9248442 Msa0054550:three_prime_UTR
TAATATGACCAATGACCAAA+AGG 0.486998 1_2:+9248259 None:intergenic
TTGCTAGGCGAGTGTTGACC+AGG 0.493979 1_2:+9250382 None:intergenic
AGACTTTGAATGGCGAAGTC+CGG 0.501336 1_2:-9248773 Msa0054550:CDS
ACTCAATGGTGGCAAAGAAA+AGG 0.504888 1_2:+9251116 None:intergenic
TTCATTCTCCCATGTGTACT+GGG 0.505813 1_2:-9248305 Msa0054550:three_prime_UTR
TTCAGTTGGTGTTGAAGGAT+AGG 0.505836 1_2:-9250786 Msa0054550:CDS
ATGCATACCATCTTTCAGTT+GGG 0.510205 1_2:+9249781 None:intergenic
ACATAGGAGAAGTTACTCAT+TGG 0.510819 1_2:-9250464 Msa0054550:CDS
TTAGAGGAGAGAGTTTCGAT+GGG 0.511374 1_2:-9250747 Msa0054550:CDS
CTGGAATGAGTTTGAGATTG+TGG 0.518906 1_2:+9251174 None:intergenic
GGGGAAGGGGAAGGACTCAA+TGG 0.522243 1_2:+9251102 None:intergenic
TGTGAAAGGAATAGGTGCTA+AGG 0.524307 1_2:-9250566 Msa0054550:CDS
TTCTCCCATGTGTACTGGGA+AGG 0.526214 1_2:-9248301 Msa0054550:three_prime_UTR
CATTTCTGAATTGGAGCAGA+AGG 0.526293 1_2:-9250058 Msa0054550:CDS
ATTCTTTGAATTGGAGCTGG+TGG 0.526808 1_2:-9248439 Msa0054550:three_prime_UTR
AGACACACTGTAGCAGAACT+AGG 0.526862 1_2:-9248744 Msa0054550:CDS
CATGCATACCATCTTTCAGT+TGG 0.528845 1_2:+9249780 None:intergenic
GGGTGCGAGTTCAAGCTGTT+CGG 0.530451 1_2:-9250545 Msa0054550:CDS
GGTTAGGCGAAGGTGCATGA+TGG 0.530722 1_2:+9251001 None:intergenic
TCAGTTGGTGTTGAAGGATA+GGG 0.533089 1_2:-9250785 Msa0054550:CDS
CAGCTGCTCGCTCGAAGGAG+CGG 0.534434 1_2:-9250092 Msa0054550:CDS
CATAGGATTCAATTGAATTG+GGG 0.534542 1_2:+9251332 None:intergenic
GTATTAGGGTTAGGGTATGA+AGG 0.535303 1_2:+9251243 None:intergenic
ACAAATTCCGATATCCCTAA+AGG 0.537853 1_2:+9250907 None:intergenic
GTTAGGCGAAGGTGCATGAT+GGG 0.538166 1_2:+9251002 None:intergenic
AACTTACATGATAAGGGGAA+GGG 0.539958 1_2:+9251088 None:intergenic
CGCGGTCATGCTGTTCAACA+TGG 0.545730 1_2:-9250979 Msa0054550:CDS
ACACTCGCCTAGCAATTCAA+TGG 0.545737 1_2:-9250374 Msa0054550:CDS
CGTCGGAATTTGGTTTCTGG+AGG 0.548514 1_2:-9250835 Msa0054550:CDS
TGAATTAATGCATGAACGAA+TGG 0.549104 1_2:-9251400 Msa0054550:exon
TTAATTTGATTAATAGGCAT+AGG 0.556871 1_2:+9251315 None:intergenic
GAAGGGGAAGGACTCAATGG+TGG 0.557252 1_2:+9251105 None:intergenic
CCTCCTTTACAAGGTCGACC+TGG 0.557576 1_2:-9250400 Msa0054550:CDS
CAACAGTCCCAACTGAAAGA+TGG 0.557734 1_2:-9249788 Msa0054550:intron
ACTTCTCCTATGTCGACCAC+TGG 0.561188 1_2:+9250474 None:intergenic
GAACTTACATGATAAGGGGA+AGG 0.561647 1_2:+9251087 None:intergenic
ACTTACATGATAAGGGGAAG+GGG 0.562315 1_2:+9251089 None:intergenic
AGGATAGGGACTGTGTTGAT+GGG 0.565060 1_2:-9250771 Msa0054550:CDS
AGAGGAGGGAAGGAGTCAAG+AGG 0.565709 1_2:-9250519 Msa0054550:CDS
GCTCTGAATGAGACTTTGAA+TGG 0.567061 1_2:-9248783 Msa0054550:CDS
CTACAGTGTGTCTTAAGCGC+CGG 0.567559 1_2:+9248754 None:intergenic
TTCCAATCGAAGCATCAGAA+TGG 0.567958 1_2:-9248549 Msa0054550:CDS
GATTGTGGAGGCATAAATTG+GGG 0.570685 1_2:+9251189 None:intergenic
TTGCTCCCAGTGGTCGACAT+AGG 0.574211 1_2:-9250480 Msa0054550:CDS
GAGAGTCGTGTAAATGTGAA+AGG 0.575120 1_2:-9250580 Msa0054550:CDS
AGAATAAAGAGTACAAATTG+AGG 0.575659 1_2:-9249826 Msa0054550:CDS
AGCTGAGACGTCACCAGCTG+AGG 0.575859 1_2:+9250874 None:intergenic
TCAATCAGCTGCTCGCTCGA+AGG 0.576170 1_2:-9250097 Msa0054550:CDS
GTTTCTGGAGGAGAGAAACC+TGG 0.577894 1_2:-9250823 Msa0054550:CDS
GCATGACCGCGGTTAGGCGA+AGG 0.578882 1_2:+9250991 None:intergenic
AAAATCCTTCCCAGTACACA+TGG 0.579776 1_2:+9248296 None:intergenic
TGTTCGGATGAGAGGAGGGA+AGG 0.581391 1_2:-9250529 Msa0054550:CDS
TGACCAGGTCGACCTTGTAA+AGG 0.581765 1_2:+9250397 None:intergenic
GTTCAAGCTGTTCGGATGAG+AGG 0.582599 1_2:-9250537 Msa0054550:CDS
GATGGGAGGAAAGAGAATGA+TGG 0.583007 1_2:-9250730 Msa0054550:CDS
TTAGGGTTAGGGTATGAAGG+TGG 0.584414 1_2:+9251246 None:intergenic
TTCCGCCTCGTAAAGGGCAT+AGG 0.587282 1_2:-9250948 Msa0054550:CDS
TGAACAGCATGACCGCGGTT+AGG 0.587550 1_2:+9250985 None:intergenic
AACGGTGGTGAAGAAGAGAA+TGG 0.588296 1_2:+9251746 None:intergenic
ACATGATAAGGGGAAGGGGA+AGG 0.589634 1_2:+9251093 None:intergenic
GTGAAAGGAATAGGTGCTAA+GGG 0.589966 1_2:-9250565 Msa0054550:CDS
CAAGCTGTTCGGATGAGAGG+AGG 0.593383 1_2:-9250534 Msa0054550:CDS
CGCCTCGTAAAGGGCATAGG+CGG 0.597353 1_2:-9250945 Msa0054550:CDS
AGTAGGTTGTGACAAAGACC+TGG 0.598554 1_2:+9251155 None:intergenic
TCGCCTAGCAATTCAATGGA+TGG 0.602631 1_2:-9250370 Msa0054550:CDS
AAATGGTGAATTCAGCTCAC+AGG 0.605226 1_2:-9250314 Msa0054550:CDS
TCGAACCCGATTCCGAAAAG+GGG 0.606202 1_2:+9251061 None:intergenic
TTATGAGAAGCCGATTCAGT+TGG 0.606692 1_2:-9250800 Msa0054550:CDS
AGTGAACTACATACATCAGT+TGG 0.608879 1_2:-9248389 Msa0054550:three_prime_UTR
TGAATCGGCTTCTCATAACC+AGG 0.610622 1_2:+9250805 None:intergenic
GTTTGAACTTACATGATAAG+GGG 0.611900 1_2:+9251083 None:intergenic
AAAGATGTTTCTATGGACGA+TGG 0.616437 1_2:-9251039 Msa0054550:CDS
CTTCTCCTATGTCGACCACT+GGG 0.616721 1_2:+9250475 None:intergenic
TCGAGCCATAAGACCTGAGA+GGG 0.619641 1_2:+9248710 None:intergenic
AAGCTGTTCGGATGAGAGGA+GGG 0.619898 1_2:-9250533 Msa0054550:CDS
CCATGGTGGACCATTTATGA+AGG 0.620965 1_2:-9248181 Msa0054550:three_prime_UTR
CCAGGTCGACCTTGTAAAGG+AGG 0.621909 1_2:+9250400 None:intergenic
CAGAACCAGTGGTTCGAAGA+CGG 0.626425 1_2:-9250626 Msa0054550:CDS
ATAGGATTCAATTGAATTGG+GGG 0.630004 1_2:+9251333 None:intergenic
TAGTGAGTGTCAGTGATCGT+CGG 0.631999 1_2:-9250852 Msa0054550:CDS
TTACTGCAAACATTATGCAG+TGG 0.632905 1_2:+9248521 None:intergenic
TAAAACACCAGAAATCAGCA+TGG 0.660292 1_2:-9250344 Msa0054550:CDS
CGCCTATGCCCTTTACGAGG+CGG 0.666230 1_2:+9250946 None:intergenic
ATGGAAGATAGCAGAACCAG+TGG 0.676860 1_2:-9250637 Msa0054550:CDS
GACCGCCTATGCCCTTTACG+AGG 0.680484 1_2:+9250943 None:intergenic
CTGATCCCAAGCGTGCAAAG+AGG 0.685194 1_2:-9250243 Msa0054550:intron
AAATCCTTCCCAGTACACAT+GGG 0.689306 1_2:+9248297 None:intergenic
CATGCACCTTCGCCTAACCG+CGG 0.696591 1_2:-9250997 Msa0054550:CDS
TAAACTTGCTGAAATTGCTG+CGG 0.696854 1_2:-9250266 Msa0054550:CDS
TCATATTATGAACACAACCT+CGG 0.697255 1_2:-9248244 Msa0054550:three_prime_UTR
CCTTCATAAATGGTCCACCA+TGG 0.698805 1_2:+9248181 None:intergenic
GAATGAGTTTGAGATTGTGG+AGG 0.705083 1_2:+9251177 None:intergenic
GTCGAGCCATAAGACCTGAG+AGG 0.706228 1_2:+9248709 None:intergenic
AATGGAGATATTGCTCCCAG+TGG 0.710736 1_2:-9250490 Msa0054550:CDS
CATGTTGAACAGCATGACCG+CGG 0.717359 1_2:+9250980 None:intergenic
CACACTGTAGCAGAACTAGG+CGG 0.776415 1_2:-9248741 Msa0054550:CDS
ACTTCAGTATGACAACACCG+AGG 0.833481 1_2:+9248227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTAATTTGATTAAT+AGG + chr1_2:9248613-9248632 None:intergenic 10.0%
!! TATTAATCAAATTAATCAAA+TGG - chr1_2:9248612-9248631 Msa0054550:CDS 10.0%
!! ATTAATCAAATTAATCAAAT+GGG - chr1_2:9248613-9248632 Msa0054550:CDS 10.0%
!!! TTCAATATTAAAATTTTCAA+TGG + chr1_2:9249487-9249506 None:intergenic 10.0%
!!! TTTTAAACATTTTTAAGTAT+TGG - chr1_2:9251714-9251733 Msa0054550:intron 10.0%
!!! GAATATAGTAATTCAAATTT+TGG - chr1_2:9250378-9250397 Msa0054550:CDS 15.0%
!! ACTAAATATATTCTTTGAAT+TGG - chr1_2:9251471-9251490 Msa0054550:five_prime_UTR 15.0%
!! AGAGTTGAAAAATGATTAAA+AGG + chr1_2:9248354-9248373 None:intergenic 20.0%
!! CAATAATTAAGCAAATAATC+AGG + chr1_2:9248462-9248481 None:intergenic 20.0%
!! GATTATTTGCTTAATTATTG+TGG - chr1_2:9248462-9248481 Msa0054550:three_prime_UTR 20.0%
!!! TTAATTTGATTAATAGGCAT+AGG + chr1_2:9248607-9248626 None:intergenic 20.0%
!! GAATCAATAGATAAAAAAGT+AGG + chr1_2:9248784-9248803 None:intergenic 20.0%
!! AATTCACAAACTTAAGAAAA+AGG + chr1_2:9249972-9249991 None:intergenic 20.0%
!! TAACTAGAACATAAAGTAAA+AGG + chr1_2:9250173-9250192 None:intergenic 20.0%
!!! TGTGATTTTCTATATTTAGA+TGG - chr1_2:9250300-9250319 Msa0054550:CDS 20.0%
!!! ATATTTAGATGGATTTTATG+TGG - chr1_2:9250311-9250330 Msa0054550:CDS 20.0%
!!! ATATACTGTATGACAAATTT+TGG - chr1_2:9250350-9250369 Msa0054550:CDS 20.0%
!! CTTAATACATGATAGTAAAA+TGG + chr1_2:9250668-9250687 None:intergenic 20.0%
!!! CATTTTACTATCATGTATTA+AGG - chr1_2:9250666-9250685 Msa0054550:CDS 20.0%
!! TGAATACATAGCTAAATATT+TGG + chr1_2:9251096-9251115 None:intergenic 20.0%
!!! ATATAAGCAATTGATGATAT+TGG - chr1_2:9251426-9251445 Msa0054550:five_prime_UTR 20.0%
! ATCACTAATTAATCTTGTAG+AGG + chr1_2:9248287-9248306 None:intergenic 25.0%
!! TCTTTATCATTTTGCAAGAT+AGG - chr1_2:9248310-9248329 Msa0054550:three_prime_UTR 25.0%
!! CTTTATCATTTTGCAAGATA+GGG - chr1_2:9248311-9248330 Msa0054550:three_prime_UTR 25.0%
!!! TTTTTTCCAAAAGAAAGACA+CGG + chr1_2:9249731-9249750 None:intergenic 25.0%
! TAAATGTTGAATTCTCTTCT+AGG - chr1_2:9249785-9249804 Msa0054550:intron 25.0%
! GATGAAATACATTTCTGAAT+TGG - chr1_2:9249852-9249871 Msa0054550:CDS 25.0%
!! AGAATAAAGAGTACAAATTG+AGG - chr1_2:9250093-9250112 Msa0054550:CDS 25.0%
! GAACATAAAGTAAAAGGAAT+AGG + chr1_2:9250167-9250186 None:intergenic 25.0%
!!! TTCCTTGCAATCTATTTTTT+TGG - chr1_2:9250203-9250222 Msa0054550:intron 25.0%
! TTCCAAAAAAATAGATTGCA+AGG + chr1_2:9250208-9250227 None:intergenic 25.0%
!!! TTGTATATGCAGTTTTAAAG+AGG + chr1_2:9250534-9250553 None:intergenic 25.0%
! CAAACTGTTTGAATGTAATA+TGG - chr1_2:9250551-9250570 Msa0054550:CDS 25.0%
! TTACCTATGAATCTCTTTAT+CGG - chr1_2:9250895-9250914 Msa0054550:CDS 25.0%
! AAGATCAAAAAATATGTTGC+TGG + chr1_2:9250986-9251005 None:intergenic 25.0%
! TATTAATCAACAAATGTTCC+AGG - chr1_2:9251240-9251259 Msa0054550:CDS 25.0%
!!! TTTCATGTTAGTTTACCTTT+TGG - chr1_2:9251645-9251664 Msa0054550:intron 25.0%
ACATAAGCAGAAAAATCCAA+CGG + chr1_2:9248194-9248213 None:intergenic 30.0%
! CATCAATAATTTGCAGTTTG+AGG - chr1_2:9248419-9248438 Msa0054550:three_prime_UTR 30.0%
TGAATTAATGCATGAACGAA+TGG - chr1_2:9248519-9248538 Msa0054550:exon 30.0%
CAGAAAAAAGTTCATGCATT+TGG - chr1_2:9248553-9248572 Msa0054550:CDS 30.0%
ATAGGATTCAATTGAATTGG+GGG + chr1_2:9248589-9248608 None:intergenic 30.0%
CATAGGATTCAATTGAATTG+GGG + chr1_2:9248590-9248609 None:intergenic 30.0%
GCATAGGATTCAATTGAATT+GGG + chr1_2:9248591-9248610 None:intergenic 30.0%
!!! AATCACAAAAGTTCTGGTTT+TGG - chr1_2:9248646-9248665 Msa0054550:CDS 30.0%
ATAAACTGGTATTAGGGTTA+GGG + chr1_2:9248687-9248706 None:intergenic 30.0%
TAGGTGATAAACTGGTATTA+GGG + chr1_2:9248693-9248712 None:intergenic 30.0%
TTAGGTGATAAACTGGTATT+AGG + chr1_2:9248694-9248713 None:intergenic 30.0%
GTTTGAACTTACATGATAAG+GGG + chr1_2:9248839-9248858 None:intergenic 30.0%
GGTTTGAACTTACATGATAA+GGG + chr1_2:9248840-9248859 None:intergenic 30.0%
GTTTAGTGCTTACATGAATT+TGG - chr1_2:9249230-9249249 Msa0054550:intron 30.0%
! TATGCACAACATGAGTTTTT+CGG - chr1_2:9249257-9249276 Msa0054550:intron 30.0%
ACAGGAGATGAAGAAAATAA+TGG - chr1_2:9249623-9249642 Msa0054550:intron 30.0%
AAAGAAAGACACGGAAATAT+GGG + chr1_2:9249722-9249741 None:intergenic 30.0%
AAAAGAAAGACACGGAAATA+TGG + chr1_2:9249723-9249742 None:intergenic 30.0%
! ATATTTCCGTGTCTTTCTTT+TGG - chr1_2:9249722-9249741 Msa0054550:intron 30.0%
!!! TGAATTCTCTTCTAGGATTT+TGG - chr1_2:9249792-9249811 Msa0054550:CDS 30.0%
TACTCAGTTTACCAAATTAC+AGG - chr1_2:9249918-9249937 Msa0054550:intron 30.0%
ATAGCAGCATACATGATATA+TGG + chr1_2:9250006-9250025 None:intergenic 30.0%
!! AAAACCAAAAGTACTATGTC+AGG + chr1_2:9250462-9250481 None:intergenic 30.0%
!!! GACATAGTACTTTTGGTTTT+TGG - chr1_2:9250462-9250481 Msa0054550:CDS 30.0%
! TCTATAAAGTTGATCCCATA+AGG + chr1_2:9250625-9250644 None:intergenic 30.0%
TGCATAATGTTTGCAGTAAA+TGG - chr1_2:9251402-9251421 Msa0054550:exon 30.0%
TATATTCTTTGAATTGGAGC+TGG - chr1_2:9251477-9251496 Msa0054550:five_prime_UTR 30.0%
! TTAGTTTACCTTTTGGTCAT+TGG - chr1_2:9251652-9251671 Msa0054550:intron 30.0%
TAATATGACCAATGACCAAA+AGG + chr1_2:9251663-9251682 None:intergenic 30.0%
TCATATTATGAACACAACCT+CGG - chr1_2:9251675-9251694 Msa0054550:intron 30.0%
!!! CATTTTTAAGTATTGGTCCA+TGG - chr1_2:9251721-9251740 Msa0054550:intron 30.0%
ATAGACAACACCTTCATAAA+TGG + chr1_2:9251751-9251770 None:intergenic 30.0%
TTCAACTCTTAACTATGACC+AGG - chr1_2:9248365-9248384 Msa0054550:three_prime_UTR 35.0%
ATTACAGTAGATTATGCACC+TGG + chr1_2:9248386-9248405 None:intergenic 35.0%
! TTCAATTGAATTGGGGGTTT+TGG + chr1_2:9248583-9248602 None:intergenic 35.0%
GGCATAGGATTCAATTGAAT+TGG + chr1_2:9248592-9248611 None:intergenic 35.0%
! CCAGAACTTTTGTGATTTTC+AGG + chr1_2:9248643-9248662 None:intergenic 35.0%
CCTGAAAATCACAAAAGTTC+TGG - chr1_2:9248640-9248659 Msa0054550:CDS 35.0%
GATAAACTGGTATTAGGGTT+AGG + chr1_2:9248688-9248707 None:intergenic 35.0%
TGATGGTTTAGGTGATAAAC+TGG + chr1_2:9248701-9248720 None:intergenic 35.0%
! AGATTGTGGAGGCATAAATT+GGG + chr1_2:9248734-9248753 None:intergenic 35.0%
AACTTACATGATAAGGGGAA+GGG + chr1_2:9248834-9248853 None:intergenic 35.0%
GGGTTTGAACTTACATGATA+AGG + chr1_2:9248841-9248860 None:intergenic 35.0%
! TGTAAGTTCAAACCCCTTTT+CGG - chr1_2:9248846-9248865 Msa0054550:intron 35.0%
! AAAGATGTTTCTATGGACGA+TGG - chr1_2:9248880-9248899 Msa0054550:intron 35.0%
ACAAATTCCGATATCCCTAA+AGG + chr1_2:9249015-9249034 None:intergenic 35.0%
! ATGCACAACATGAGTTTTTC+GGG - chr1_2:9249258-9249277 Msa0054550:intron 35.0%
CGTGTAAATGTGAAAGGAAT+AGG - chr1_2:9249345-9249364 Msa0054550:intron 35.0%
ACATAGGAGAAGTTACTCAT+TGG - chr1_2:9249455-9249474 Msa0054550:intron 35.0%
TAAAACACCAGAAATCAGCA+TGG - chr1_2:9249575-9249594 Msa0054550:intron 35.0%
!! TAAACTTGCTGAAATTGCTG+CGG - chr1_2:9249653-9249672 Msa0054550:intron 35.0%
TAGTTTCTGTCTGAAGAGTT+TGG + chr1_2:9249888-9249907 None:intergenic 35.0%
GATGATACACACCTGTAATT+TGG + chr1_2:9249932-9249951 None:intergenic 35.0%
TTATTGCACTTGTCTACAGA+TGG - chr1_2:9250049-9250068 Msa0054550:CDS 35.0%
ATGCATACCATCTTTCAGTT+GGG + chr1_2:9250141-9250160 None:intergenic 35.0%
CAGAGATCATTGAACAAGAT+TGG + chr1_2:9250412-9250431 None:intergenic 35.0%
TTCAGTACAATACGGTACTT+GGG + chr1_2:9250490-9250509 None:intergenic 35.0%
ATTCAGTACAATACGGTACT+TGG + chr1_2:9250491-9250510 None:intergenic 35.0%
CCAAGAGATTCAGTACAATA+CGG + chr1_2:9250498-9250517 None:intergenic 35.0%
CATATTGTCCTGTCAAATAG+CGG + chr1_2:9250788-9250807 None:intergenic 35.0%
ATTCTGCTATGCTATAGTGT+CGG - chr1_2:9250856-9250875 Msa0054550:CDS 35.0%
ATGCCGATAAAGAGATTCAT+AGG + chr1_2:9250901-9250920 None:intergenic 35.0%
TCAATTGCAGCACAAAATCA+AGG + chr1_2:9251059-9251078 None:intergenic 35.0%
TGGAAATTTCTAAGCTGGTT+TGG + chr1_2:9251280-9251299 None:intergenic 35.0%
TTACTGCAAACATTATGCAG+TGG + chr1_2:9251401-9251420 None:intergenic 35.0%
AGTGAACTACATACATCAGT+TGG - chr1_2:9251530-9251549 Msa0054550:five_prime_UTR 35.0%
! ATACATCAGTTGGCCTATAT+AGG - chr1_2:9251540-9251559 Msa0054550:intron 35.0%
! TACATCAGTTGGCCTATATA+GGG - chr1_2:9251541-9251560 Msa0054550:intron 35.0%
GATAATGAACAGCCCTATAT+AGG + chr1_2:9251556-9251575 None:intergenic 35.0%
!!! TTTTAAGTATTGGTCCATGG+TGG - chr1_2:9251724-9251743 Msa0054550:intron 35.0%
TAAGCAGAAAAATCCAACGG+TGG + chr1_2:9248191-9248210 None:intergenic 40.0%
GTATTAGGGTTAGGGTATGA+AGG + chr1_2:9248679-9248698 None:intergenic 40.0%
! GGATAAGGAGATGATGGTTT+AGG + chr1_2:9248712-9248731 None:intergenic 40.0%
AATTGGGGATAAGGAGATGA+TGG + chr1_2:9248718-9248737 None:intergenic 40.0%
! GATTGTGGAGGCATAAATTG+GGG + chr1_2:9248733-9248752 None:intergenic 40.0%
! GAGATTGTGGAGGCATAAAT+TGG + chr1_2:9248735-9248754 None:intergenic 40.0%
! GAATGAGTTTGAGATTGTGG+AGG + chr1_2:9248745-9248764 None:intergenic 40.0%
! CTGGAATGAGTTTGAGATTG+TGG + chr1_2:9248748-9248767 None:intergenic 40.0%
CACAATCTCAAACTCATTCC+AGG - chr1_2:9248746-9248765 Msa0054550:CDS 40.0%
ACTCAATGGTGGCAAAGAAA+AGG + chr1_2:9248806-9248825 None:intergenic 40.0%
ACTTACATGATAAGGGGAAG+GGG + chr1_2:9248833-9248852 None:intergenic 40.0%
GAACTTACATGATAAGGGGA+AGG + chr1_2:9248835-9248854 None:intergenic 40.0%
! TTCAAACCCCTTTTCGGAAT+CGG - chr1_2:9248852-9248871 Msa0054550:intron 40.0%
! GGGTTCGAAAGATGTTTCTA+TGG - chr1_2:9248873-9248892 Msa0054550:intron 40.0%
! TGATTCGCCTTTAGGGATAT+CGG - chr1_2:9249005-9249024 Msa0054550:intron 40.0%
! TTATGAGAAGCCGATTCAGT+TGG - chr1_2:9249119-9249138 Msa0054550:intron 40.0%
TCCTTCAACACCAACTGAAT+CGG + chr1_2:9249132-9249151 None:intergenic 40.0%
!! TTCAGTTGGTGTTGAAGGAT+AGG - chr1_2:9249133-9249152 Msa0054550:intron 40.0%
!! TCAGTTGGTGTTGAAGGATA+GGG - chr1_2:9249134-9249153 Msa0054550:intron 40.0%
TTTAGAGGAGAGAGTTTCGA+TGG - chr1_2:9249171-9249190 Msa0054550:intron 40.0%
TTAGAGGAGAGAGTTTCGAT+GGG - chr1_2:9249172-9249191 Msa0054550:intron 40.0%
! AGAGAATGATGGAGCTGAAA+TGG - chr1_2:9249200-9249219 Msa0054550:intron 40.0%
!!! CAACATGAGTTTTTCGGGTA+TGG - chr1_2:9249263-9249282 Msa0054550:intron 40.0%
GAGAGTCGTGTAAATGTGAA+AGG - chr1_2:9249339-9249358 Msa0054550:intron 40.0%
TGTGAAAGGAATAGGTGCTA+AGG - chr1_2:9249353-9249372 Msa0054550:intron 40.0%
GTGAAAGGAATAGGTGCTAA+GGG - chr1_2:9249354-9249373 Msa0054550:intron 40.0%
CATAAGCTTCCTCCTTTACA+AGG - chr1_2:9249510-9249529 Msa0054550:intron 40.0%
CTACCATCCATTGAATTGCT+AGG + chr1_2:9249555-9249574 None:intergenic 40.0%
ATCAGCATGGAGTTTGGAAA+TGG - chr1_2:9249588-9249607 Msa0054550:intron 40.0%
AAATGGTGAATTCAGCTCAC+AGG - chr1_2:9249605-9249624 Msa0054550:intron 40.0%
CATTTCTGAATTGGAGCAGA+AGG - chr1_2:9249861-9249880 Msa0054550:intron 40.0%
CAAATTGAGGCTTCAATCCT+TGG - chr1_2:9250106-9250125 Msa0054550:CDS 40.0%
CATGCATACCATCTTTCAGT+TGG + chr1_2:9250142-9250161 None:intergenic 40.0%
GTCAGGCAGGAAGATTTAAA+AGG + chr1_2:9250445-9250464 None:intergenic 40.0%
CCGTATTGTACTGAATCTCT+TGG - chr1_2:9250495-9250514 Msa0054550:CDS 40.0%
CAAGCCTTAGTCTACCTTAT+GGG - chr1_2:9250608-9250627 Msa0054550:CDS 40.0%
TGATCCCATAAGGTAGACTA+AGG + chr1_2:9250615-9250634 None:intergenic 40.0%
TTCAGTGTTGTCAATCACAG+CGG - chr1_2:9250707-9250726 Msa0054550:CDS 40.0%
TACTATAGCCGCTATTTGAC+AGG - chr1_2:9250777-9250796 Msa0054550:CDS 40.0%
!! TTATCGGCATTTTTCAGCAC+TGG - chr1_2:9250911-9250930 Msa0054550:CDS 40.0%
GGAATTACAGTGCTTCTGAA+GGG + chr1_2:9251038-9251057 None:intergenic 40.0%
AGGAATTACAGTGCTTCTGA+AGG + chr1_2:9251039-9251058 None:intergenic 40.0%
! GCTCTGAATGAGACTTTGAA+TGG - chr1_2:9251136-9251155 Msa0054550:CDS 40.0%
! TTCCAATCGAAGCATCAGAA+TGG - chr1_2:9251370-9251389 Msa0054550:CDS 40.0%
ATTCTTTGAATTGGAGCTGG+TGG - chr1_2:9251480-9251499 Msa0054550:five_prime_UTR 40.0%
TTCATTCTCCCATGTGTACT+GGG - chr1_2:9251614-9251633 Msa0054550:intron 40.0%
AAATCCTTCCCAGTACACAT+GGG + chr1_2:9251625-9251644 None:intergenic 40.0%
AAAATCCTTCCCAGTACACA+TGG + chr1_2:9251626-9251645 None:intergenic 40.0%
AACGGTGGTGAAGAAGAGAA+TGG + chr1_2:9248176-9248195 None:intergenic 45.0%
ATTCTCTTCTTCACCACCGT+TGG - chr1_2:9248175-9248194 Msa0054550:three_prime_UTR 45.0%
TTAGGGTTAGGGTATGAAGG+TGG + chr1_2:9248676-9248695 None:intergenic 45.0%
! GGAGGCATAAATTGGGGATA+AGG + chr1_2:9248727-9248746 None:intergenic 45.0%
AGTAGGTTGTGACAAAGACC+TGG + chr1_2:9248767-9248786 None:intergenic 45.0%
! TCAAACCCCTTTTCGGAATC+GGG - chr1_2:9248853-9248872 Msa0054550:intron 45.0%
TTCGAACCCGATTCCGAAAA+GGG + chr1_2:9248862-9248881 None:intergenic 45.0%
TTTCGAACCCGATTCCGAAA+AGG + chr1_2:9248863-9248882 None:intergenic 45.0%
! TGTTTCTATGGACGATGGCT+TGG - chr1_2:9248885-9248904 Msa0054550:intron 45.0%
!! ATGGACGATGGCTTGGATTT+TGG - chr1_2:9248892-9248911 Msa0054550:intron 45.0%
ATTGTCTTCCGCCTCGTAAA+GGG - chr1_2:9248965-9248984 Msa0054550:intron 45.0%
TCTAGCAGTGATTCGCCTTT+AGG - chr1_2:9248997-9249016 Msa0054550:intron 45.0%
CTAGCAGTGATTCGCCTTTA+GGG - chr1_2:9248998-9249017 Msa0054550:intron 45.0%
TAGTGAGTGTCAGTGATCGT+CGG - chr1_2:9249067-9249086 Msa0054550:intron 45.0%
TGTCAGTGATCGTCGGAATT+TGG - chr1_2:9249074-9249093 Msa0054550:intron 45.0%
! GATCGTCGGAATTTGGTTTC+TGG - chr1_2:9249081-9249100 Msa0054550:intron 45.0%
! TGAATCGGCTTCTCATAACC+AGG + chr1_2:9249117-9249136 None:intergenic 45.0%
AAGGATAGGGACTGTGTTGA+TGG - chr1_2:9249147-9249166 Msa0054550:intron 45.0%
! AGGATAGGGACTGTGTTGAT+GGG - chr1_2:9249148-9249167 Msa0054550:intron 45.0%
!! GACTGTGTTGATGGGTTTAG+AGG - chr1_2:9249156-9249175 Msa0054550:intron 45.0%
GATGGGAGGAAAGAGAATGA+TGG - chr1_2:9249189-9249208 Msa0054550:intron 45.0%
ATGGAAGATAGCAGAACCAG+TGG - chr1_2:9249282-9249301 Msa0054550:intron 45.0%
! GGAGTCAAGAGGAGTTCTAA+TGG - chr1_2:9249411-9249430 Msa0054550:intron 45.0%
AATGGAGATATTGCTCCCAG+TGG - chr1_2:9249429-9249448 Msa0054550:intron 45.0%
ACACTCGCCTAGCAATTCAA+TGG - chr1_2:9249545-9249564 Msa0054550:intron 45.0%
TCGCCTAGCAATTCAATGGA+TGG - chr1_2:9249549-9249568 Msa0054550:intron 45.0%
!! CCAAACTCCATGCTGATTTC+TGG + chr1_2:9249585-9249604 None:intergenic 45.0%
CCAGAAATCAGCATGGAGTT+TGG - chr1_2:9249582-9249601 Msa0054550:intron 45.0%
TCTTACCTCTTTGCACGCTT+GGG + chr1_2:9249684-9249703 None:intergenic 45.0%
TTCTTACCTCTTTGCACGCT+TGG + chr1_2:9249685-9249704 None:intergenic 45.0%
CAACAGTCCCAACTGAAAGA+TGG - chr1_2:9250131-9250150 Msa0054550:intron 45.0%
!! CCAAAAGTACTATGTCAGGC+AGG + chr1_2:9250458-9250477 None:intergenic 45.0%
! CCTGCCTGACATAGTACTTT+TGG - chr1_2:9250455-9250474 Msa0054550:CDS 45.0%
CCATAAGGTAGACTAAGGCT+TGG + chr1_2:9250610-9250629 None:intergenic 45.0%
CCAAGCCTTAGTCTACCTTA+TGG - chr1_2:9250607-9250626 Msa0054550:CDS 45.0%
GCTGTGATTGACAACACTGA+AGG + chr1_2:9250708-9250727 None:intergenic 45.0%
TCAATCACAGCGGAAAGTAG+TGG - chr1_2:9250717-9250736 Msa0054550:CDS 45.0%
CAATCACAGCGGAAAGTAGT+GGG - chr1_2:9250718-9250737 Msa0054550:CDS 45.0%
CTATAGCACTGTAGCATAGC+GGG + chr1_2:9250754-9250773 None:intergenic 45.0%
CCTATAGCACTGTAGCATAG+CGG + chr1_2:9250755-9250774 None:intergenic 45.0%
CGCTATGCTACAGTGCTATA+GGG - chr1_2:9250753-9250772 Msa0054550:CDS 45.0%
! TTACAGTGCTTCTGAAGGGA+TGG + chr1_2:9251034-9251053 None:intergenic 45.0%
AGACTTTGAATGGCGAAGTC+CGG - chr1_2:9251146-9251165 Msa0054550:CDS 45.0%
AGACACACTGTAGCAGAACT+AGG - chr1_2:9251175-9251194 Msa0054550:CDS 45.0%
TGCCATTCTGATGCTTCGAT+TGG + chr1_2:9251375-9251394 None:intergenic 45.0%
CTTCATTCTCCCATGTGTAC+TGG - chr1_2:9251613-9251632 Msa0054550:intron 45.0%
ACTTCAGTATGACAACACCG+AGG + chr1_2:9251695-9251714 None:intergenic 45.0%
CCTTCATAAATGGTCCACCA+TGG + chr1_2:9251741-9251760 None:intergenic 45.0%
!! CCATGGTGGACCATTTATGA+AGG - chr1_2:9251738-9251757 Msa0054550:five_prime_UTR 45.0%
ACATGATAAGGGGAAGGGGA+AGG + chr1_2:9248829-9248848 None:intergenic 50.0%
TCGAACCCGATTCCGAAAAG+GGG + chr1_2:9248861-9248880 None:intergenic 50.0%
! GTTAGGCGAAGGTGCATGAT+GGG + chr1_2:9248920-9248939 None:intergenic 50.0%
CATGTTGAACAGCATGACCG+CGG + chr1_2:9248942-9248961 None:intergenic 50.0%
CATTGTCTTCCGCCTCGTAA+AGG - chr1_2:9248964-9248983 Msa0054550:intron 50.0%
TGTTAACTCTGTGCCTCAGC+TGG - chr1_2:9249032-9249051 Msa0054550:intron 50.0%
! CGTCGGAATTTGGTTTCTGG+AGG - chr1_2:9249084-9249103 Msa0054550:intron 50.0%
! GTTTCTGGAGGAGAGAAACC+TGG - chr1_2:9249096-9249115 Msa0054550:intron 50.0%
!! GCCGATTCAGTTGGTGTTGA+AGG - chr1_2:9249128-9249147 Msa0054550:intron 50.0%
CAGAACCAGTGGTTCGAAGA+CGG - chr1_2:9249293-9249312 Msa0054550:intron 50.0%
TTCAACCGTCTTCGAACCAC+TGG + chr1_2:9249301-9249320 None:intergenic 50.0%
GTTCAAGCTGTTCGGATGAG+AGG - chr1_2:9249382-9249401 Msa0054550:intron 50.0%
AAGCTGTTCGGATGAGAGGA+GGG - chr1_2:9249386-9249405 Msa0054550:intron 50.0%
CTTCTCCTATGTCGACCACT+GGG + chr1_2:9249447-9249466 None:intergenic 50.0%
ACTTCTCCTATGTCGACCAC+TGG + chr1_2:9249448-9249467 None:intergenic 50.0%
TGACCAGGTCGACCTTGTAA+AGG + chr1_2:9249525-9249544 None:intergenic 50.0%
CAGTTGGGACTGTTGTTCCA+AGG + chr1_2:9250126-9250145 None:intergenic 50.0%
CCGCTATGCTACAGTGCTAT+AGG - chr1_2:9250752-9250771 Msa0054550:CDS 50.0%
CTACAGTGTGTCTTAAGCGC+CGG + chr1_2:9251168-9251187 None:intergenic 50.0%
CACACTGTAGCAGAACTAGG+CGG - chr1_2:9251178-9251197 Msa0054550:CDS 50.0%
TCGAGCCATAAGACCTGAGA+GGG + chr1_2:9251212-9251231 None:intergenic 50.0%
GCGGCTGGAAATTTCTAAGC+TGG + chr1_2:9251285-9251304 None:intergenic 50.0%
!! TCCTGAGAGACGCTGTTTTG+CGG + chr1_2:9251304-9251323 None:intergenic 50.0%
TTCTCCCATGTGTACTGGGA+AGG - chr1_2:9251618-9251637 Msa0054550:intron 50.0%
GAAGGGGAAGGACTCAATGG+TGG + chr1_2:9248817-9248836 None:intergenic 55.0%
! GGTTAGGCGAAGGTGCATGA+TGG + chr1_2:9248921-9248940 None:intergenic 55.0%
TGAACAGCATGACCGCGGTT+AGG + chr1_2:9248937-9248956 None:intergenic 55.0%
CGCGGTCATGCTGTTCAACA+TGG - chr1_2:9248940-9248959 Msa0054550:intron 55.0%
! TTCCGCCTCGTAAAGGGCAT+AGG - chr1_2:9248971-9248990 Msa0054550:intron 55.0%
GAGGAGAGAGTTTCGATGGG+AGG - chr1_2:9249175-9249194 Msa0054550:intron 55.0%
GGGTGCGAGTTCAAGCTGTT+CGG - chr1_2:9249374-9249393 Msa0054550:intron 55.0%
CAAGCTGTTCGGATGAGAGG+AGG - chr1_2:9249385-9249404 Msa0054550:intron 55.0%
TGTTCGGATGAGAGGAGGGA+AGG - chr1_2:9249390-9249409 Msa0054550:intron 55.0%
AGAGGAGGGAAGGAGTCAAG+AGG - chr1_2:9249400-9249419 Msa0054550:intron 55.0%
TTGCTCCCAGTGGTCGACAT+AGG - chr1_2:9249439-9249458 Msa0054550:intron 55.0%
CCAGGTCGACCTTGTAAAGG+AGG + chr1_2:9249522-9249541 None:intergenic 55.0%
CCTCCTTTACAAGGTCGACC+TGG - chr1_2:9249519-9249538 Msa0054550:intron 55.0%
!! TTGCTAGGCGAGTGTTGACC+AGG + chr1_2:9249540-9249559 None:intergenic 55.0%
CTGATCCCAAGCGTGCAAAG+AGG - chr1_2:9249676-9249695 Msa0054550:intron 55.0%
TCAATCAGCTGCTCGCTCGA+AGG - chr1_2:9249822-9249841 Msa0054550:CDS 55.0%
! GCACTGTAGCATAGCGGGAT+TGG + chr1_2:9250749-9250768 None:intergenic 55.0%
! TGCTTCTGAAGGGATGGTGG+TGG + chr1_2:9251028-9251047 None:intergenic 55.0%
! CAGTGCTTCTGAAGGGATGG+TGG + chr1_2:9251031-9251050 None:intergenic 55.0%
GTCTGCCCTCTCAGGTCTTA+TGG - chr1_2:9251204-9251223 Msa0054550:CDS 55.0%
GTCGAGCCATAAGACCTGAG+AGG + chr1_2:9251213-9251232 None:intergenic 55.0%
GGGGAAGGGGAAGGACTCAA+TGG + chr1_2:9248820-9248839 None:intergenic 60.0%
CATGCACCTTCGCCTAACCG+CGG - chr1_2:9248922-9248941 Msa0054550:intron 60.0%
CGCCTATGCCCTTTACGAGG+CGG + chr1_2:9248976-9248995 None:intergenic 60.0%
! CGCCTCGTAAAGGGCATAGG+CGG - chr1_2:9248974-9248993 Msa0054550:intron 60.0%
GACCGCCTATGCCCTTTACG+AGG + chr1_2:9248979-9248998 None:intergenic 60.0%
AGCTGAGACGTCACCAGCTG+AGG + chr1_2:9249048-9249067 None:intergenic 60.0%
!! GAGAGACGCTGTTTTGCGGC+TGG + chr1_2:9251300-9251319 None:intergenic 60.0%
GCCGCAAAACAGCGTCTCTC+AGG - chr1_2:9251300-9251319 Msa0054550:CDS 60.0%
GCATGACCGCGGTTAGGCGA+AGG + chr1_2:9248931-9248950 None:intergenic 65.0%
CAGCTGCTCGCTCGAAGGAG+CGG - chr1_2:9249827-9249846 Msa0054550:CDS 65.0%
TTGGCTGCTGATGCTGCGCC+TGG + chr1_2:9251261-9251280 None:intergenic 65.0%
GGCGGAGAGTCTGCCCTCTC+AGG - chr1_2:9251196-9251215 Msa0054550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9248155 9251786 9248155 ID=Msa0054550;Name=Msa0054550
chr1_2 mRNA 9248155 9251786 9248155 ID=Msa0054550-mRNA-1;Parent=Msa0054550;Name=Msa0054550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=196|1|1|1|0.75|0.6|5|378|553
chr1_2 exon 9248155 9248804 9248155 ID=Msa0054550-mRNA-1:exon:3407;Parent=Msa0054550-mRNA-1
chr1_2 exon 9249789 9249873 9249789 ID=Msa0054550-mRNA-1:exon:3406;Parent=Msa0054550-mRNA-1
chr1_2 exon 9250002 9250134 9250002 ID=Msa0054550-mRNA-1:exon:3405;Parent=Msa0054550-mRNA-1
chr1_2 exon 9250244 9251554 9250244 ID=Msa0054550-mRNA-1:exon:3404;Parent=Msa0054550-mRNA-1
chr1_2 exon 9251730 9251786 9251730 ID=Msa0054550-mRNA-1:exon:3403;Parent=Msa0054550-mRNA-1
chr1_2 five_prime_UTR 9251730 9251786 9251730 ID=Msa0054550-mRNA-1:five_prime_utr;Parent=Msa0054550-mRNA-1
chr1_2 five_prime_UTR 9251416 9251554 9251416 ID=Msa0054550-mRNA-1:five_prime_utr;Parent=Msa0054550-mRNA-1
chr1_2 CDS 9250244 9251415 9250244 ID=Msa0054550-mRNA-1:cds;Parent=Msa0054550-mRNA-1
chr1_2 CDS 9250002 9250134 9250002 ID=Msa0054550-mRNA-1:cds;Parent=Msa0054550-mRNA-1
chr1_2 CDS 9249789 9249873 9249789 ID=Msa0054550-mRNA-1:cds;Parent=Msa0054550-mRNA-1
chr1_2 CDS 9248533 9248804 9248533 ID=Msa0054550-mRNA-1:cds;Parent=Msa0054550-mRNA-1
chr1_2 three_prime_UTR 9248155 9248532 9248155 ID=Msa0054550-mRNA-1:three_prime_utr;Parent=Msa0054550-mRNA-1
Gene Sequence

>Msa0054550

ATGCATGAACGAATGGAGCGTTTTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCCTTTTCTTTGCCACCATTGAGTCCTTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATCGGGTTCGAAAGATGTTTCTATGGACGATGGCTTGGATTTTGGTGCCCATCATGCACCTTCGCCTAACCGCGGTCATGCTGTTCAACATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGTCTCAGCTAGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAACATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGAGTTCAAGCTGTTCGGATGAGAGGAGGGAAGGAGTCAAGAGGAGTTCTAATGGAGATATTGCTCCCAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCGAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAATCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA
Protein sequence

>Msa0054550

MHERMERFDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSESGSKDVSMDDGLDFGAHHAPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTSQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGASSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA*