AlfalfaGEDB | Msa0055800

M. sativa cultivar zhongmu-4 / Msa0055800

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055800	sp\|Q9LMN7\|WAK5_ARATH	42.238	715	292	18	1	621	3	690	1.38e-167	499

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055800	A0A396JF43	83.357	715	36	6	1	636	23	733	0.0	1194

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0055800	MtrunA17_Chr1g0148461	83.357	715	36	6	1	636	23	733	1194
Msa0055800	MtrunA17_Chr1g0148501	71.309	718	120	5	4	635	8	725	1008
Msa0055800	MtrunA17_Chr1g0158201	56.601	712	213	12	6	635	10	707	758
Msa0055800	MtrunA17_Chr1g0158261	55.758	712	214	14	4	635	13	703	741
Msa0055800	MtrunA17_Chr1g0148511	56.948	734	194	19	2	635	8	719	741
Msa0055800	MtrunA17_Chr1g0158251	54.635	712	229	12	6	635	13	712	734
Msa0055800	MtrunA17_Chr1g0148491	59.815	647	154	13	79	635	3	633	711
Msa0055800	MtrunA17_Chr1g0158211	65.714	420	107	3	253	635	26	445	541
Msa0055800	MtrunA17_Chr1g0158231	65.476	420	108	3	253	635	4	423	537
Msa0055800	MtrunA17_Chr1g0158171	62.796	422	120	2	251	635	13	434	523

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055800	AT1G21230.1	42.238	715	292	18	1	621	3	690	1.40e-168	499
Msa0055800	AT1G21270.1	42.210	706	294	19	4	621	7	686	5.05e-165	490
Msa0055800	AT1G21240.1	40.385	728	312	18	5	635	7	709	3.68e-164	488
Msa0055800	AT1G21250.1	40.604	729	304	19	4	635	7	703	2.60e-160	478
Msa0055800	AT1G21210.1	39.034	725	329	15	5	635	1	706	5.41e-154	462
Msa0055800	AT1G16130.1	38.561	695	328	17	3	614	12	690	2.31e-139	424
Msa0055800	AT1G16260.3	39.039	666	333	15	4	614	8	655	3.49e-137	417
Msa0055800	AT1G16260.1	38.473	681	325	16	4	614	8	664	1.80e-135	413
Msa0055800	AT1G16260.2	38.473	681	325	16	4	614	8	664	1.80e-135	413
Msa0055800	AT1G16120.1	38.048	707	328	14	4	614	11	703	6.24e-135	412

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Find 140 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTATATAGCTT+TGG	0.431286	1_2:+11058185	Msa0055800:CDS
AAACAAACAAGAGATCAAGG+AGG	0.753887	1_2:+11058355	Msa0055800:CDS
AAATTATTCAAGATGGTATG+TGG	0.441902	1_2:+11058324	Msa0055800:CDS
AACAGCCCAATTAATAACCA+AGG	0.601846	1_2:-11056010	None:intergenic
AAGACCAAGCATGAAGGAAG+TGG	0.554397	1_2:+11058421	Msa0055800:CDS
AAGCATGAAGGAAGTGGCTA+TGG	0.511787	1_2:+11058427	Msa0055800:CDS
AAGTGTAATTGCAGCCTGGT+AGG	0.578756	1_2:-11055378	None:intergenic
AAGTGTTTACAAGGCTTTGA+AGG	0.446150	1_2:+11056135	Msa0055800:CDS
AAGTTCTTTAGGTAGAATGG+AGG	0.607521	1_2:+11057525	Msa0055800:intron
AATAACACTGGAAAATGCAC+AGG	0.607050	1_2:+11055808	Msa0055800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTAATGAAACCATTATCAA+TGG	-	chr1_2:11055304-11055323	None:intergenic	30.0%
TATCTCAACAGTAATTTCAC+AGG	+	chr1_2:11055721-11055740	Msa0055800:intron	30.0%
ATAGTAATTGGGAATAACAC+TGG	+	chr1_2:11055796-11055815	Msa0055800:CDS	30.0%
TATTCCTTTATTGCCAAACA+AGG	+	chr1_2:11055934-11055953	Msa0055800:intron	30.0%
TTTCCCCTTGGTTATTAATT+GGG	+	chr1_2:11056005-11056024	Msa0055800:CDS	30.0%
ATACAAAGTTGACATAAGAG+TGG	+	chr1_2:11056320-11056339	Msa0055800:intron	30.0%
GCAAATTGTAGAAACACTTT+AGG	+	chr1_2:11056506-11056525	Msa0055800:CDS	30.0%
ATTGCATTATTGAGGGATTT+AGG	+	chr1_2:11056890-11056909	Msa0055800:intron	30.0%
ATTAAATATTCCGCCAGTAA+TGG	+	chr1_2:11057150-11057169	Msa0055800:intron	30.0%
GAAAAATACAGTATTACTGG+CGG	-	chr1_2:11057183-11057202	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	11055295	11058535	11055295	ID=Msa0055800;Name=Msa0055800
chr1_2	mRNA	11055295	11058535	11055295	ID=Msa0055800-mRNA-1;Parent=Msa0055800;Name=Msa0055800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|0.2\|0.16\|6\|0\|636
chr1_2	exon	11055295	11055529	11055295	ID=Msa0055800-mRNA-1:exon:4214;Parent=Msa0055800-mRNA-1
chr1_2	exon	11055539	11055730	11055539	ID=Msa0055800-mRNA-1:exon:4215;Parent=Msa0055800-mRNA-1
chr1_2	exon	11055743	11055862	11055743	ID=Msa0055800-mRNA-1:exon:4216;Parent=Msa0055800-mRNA-1
chr1_2	exon	11055977	11056186	11055977	ID=Msa0055800-mRNA-1:exon:4217;Parent=Msa0055800-mRNA-1
chr1_2	exon	11056462	11056619	11056462	ID=Msa0055800-mRNA-1:exon:4218;Parent=Msa0055800-mRNA-1
chr1_2	exon	11057540	11058535	11057540	ID=Msa0055800-mRNA-1:exon:4219;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11055295	11055529	11055295	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11055539	11055730	11055539	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11055743	11055862	11055743	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11055977	11056186	11055977	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11056462	11056619	11056462	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1
chr1_2	CDS	11057540	11058535	11057540	ID=Msa0055800-mRNA-1:cds;Parent=Msa0055800-mRNA-1

Gene Sequence

>Msa0055800

ATGCATCCATTGATAATGGTTTCATTAGCACTTTTGATAAAAACAATTGCATTTGCATCTGATCAACCTCAACCTCAACAAGTCCTACCAGGCTGCAATTACACTTGTGGAGATTTAACAATTCCATATCCATTTGGGATAGGAAATTCAACAGCACAACATCATGCACCATGTTACATGGATTCAAAATTTGAACTCACCTGTGTAAACAACTCAAAATTAATTCGGCCTAGGGTCCTGGACATAAATCCCCAAGGTCAAGTGGAAATGAAATTTTCCGTCTCACATCTCTGTTCGAATAGTAGTAGTAGTAGTAATAATACCGAAGAAGCGAATAGAGCTTATCTAATAGTTTCTCCTCACACAATTTCAAGTAAGGAAAACAAATTCATAACAGTTGGTTGTGACAGTTACGGATATCTCAACAGTGCCACATATTCAACAGGGTGCTTAACAAGATGTTATAATTTTGATCCTAAAATAGTAATTGGGAATAACACTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTGGATATTCCTTCTAACCATATAAATAATCTACCTTATGAAACTTTCCCCTTGGTTATTAATTGGGCTGTTACAAATGAATCGTGTAAAATAGCACAAACTACAGATAACTATGCCTGCAAGGAAAGTAGTGAATGTGTTGATAAAGATTCAGATTATGACGGTTACAGATGCAAGTGTTTACAAGGCTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCAACAAAAACTCATGTATGCAAAAATAAAGCAAATTGTAGAAACACTTTAGGGAATCACACTTGTTTCTGTCCCGAGGGGCAAACCGGAAATGGAACAAAGGAAGGAGGGTGCCAGCAAGTTCATCCAAATGCAACTCCAATAAATGGAGGTTCTATGTTGGAACAAAAACTTCTTCAAAGAAAAGACTCGTCTCAAATAGCTCACATTTTCAAAGAAAATGAACTAAGGAAAGCCACTAACAACTTTGATGAGAGCTTAATCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTTGATGATAATAGAATTGTTGCTATCAAAAAATCCAAAACAATAGACGAAAGCCAAATTGAACAATTCATTAATGAGGTGGATGTTGTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTAGCAATGGTACTCTTTCTGAATTTCTTCGCACACAAGGTAAGACGAATGATCTAACTTGGAAAACTCGTCTTAGGATAGCTGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCAGCTGCCTCAATACCCATTATCCATAGAGATGTCAAAAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTGTCAGATTTTGGAGCTTCGAGATTGGTTGCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTGGATCCAGAGTATATGCAAACAAGCCAATTAACTGAGAAAAGTGATGTATATAGCTTTGGAGTAGTTCTTGTGGAGCTGCTAACGGGGGAGAAACCTTTTTGTTTTGGTAGGTCGGAAGAGAGAAGAAGTCTTGCTACGCACTTTTTATCTTGCTTGAAAAAGGATAATGTGTTTGAAATTATTCAAGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCGAACTGCTTGAGACTTATAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAATGCAGACCTAAATGTAGAGGAGAGTCCACTACTTGTTTCATGA

Protein sequence

>Msa0055800

MHPLIMVSLALLIKTIAFASDQPQPQQVLPGCNYTCGDLTIPYPFGIGNSTAQHHAPCYMDSKFELTCVNNSKLIRPRVLDINPQGQVEMKFSVSHLCSNSSSSSNNTEEANRAYLIVSPHTISSKENKFITVGCDSYGYLNSATYSTGCLTRCYNFDPKIVIGNNTGKCTGLGCCQVDIPSNHINNLPYETFPLVINWAVTNESCKIAQTTDNYACKESSECVDKDSDYDGYRCKCLQGFEGNPYLPGGCTDIDECATKTHVCKNKANCRNTLGNHTCFCPEGQTGNGTKEGGCQQVHPNATPINGGSMLEQKLLQRKDSSQIAHIFKENELRKATNNFDESLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFLRTQGKTNDLTWKTRLRIAAEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASRLVALDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFCFGRSEERRSLATHFLSCLKKDNVFEIIQDGMWNEENKQEIKEVAVLAANCLRLIGEERPSMKEVAMELEGMRLMDKHSWINADLNVEESPLLVS*