Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058700 | XP_003588383.1 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058700 | sp|P69781|GAT12_ARATH | 56.981 | 265 | 97 | 7 | 93 | 340 | 67 | 331 | 6.48e-91 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058700 | G7IB47 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0058700 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058700 | MtrunA17_Chr1g0146231 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Msa0058700 | MtrunA17_Chr3g0140331 | 55.152 | 330 | 107 | 8 | 19 | 340 | 68 | 364 | 1.59e-103 | 308 |
| Msa0058700 | MtrunA17_Chr8g0340401 | 46.884 | 337 | 131 | 12 | 23 | 340 | 35 | 342 | 5.06e-78 | 242 |
| Msa0058700 | MtrunA17_Chr8g0372291 | 47.317 | 205 | 90 | 5 | 96 | 300 | 102 | 288 | 1.48e-46 | 159 |
| Msa0058700 | MtrunA17_Chr4g0035891 | 34.936 | 312 | 140 | 10 | 5 | 299 | 15 | 280 | 7.33e-44 | 152 |
| Msa0058700 | MtrunA17_Chr6g0461591 | 39.732 | 224 | 101 | 6 | 107 | 296 | 35 | 258 | 1.02e-40 | 143 |
| Msa0058700 | MtrunA17_Chr5g0404981 | 44.156 | 231 | 95 | 7 | 94 | 300 | 150 | 370 | 1.30e-39 | 144 |
| Msa0058700 | MtrunA17_Chr1g0199671 | 35.463 | 313 | 142 | 11 | 27 | 294 | 9 | 306 | 1.36e-37 | 137 |
| Msa0058700 | MtrunA17_Chr3g0145121 | 37.674 | 215 | 116 | 3 | 87 | 300 | 88 | 285 | 1.80e-37 | 136 |
| Msa0058700 | MtrunA17_Chr7g0253101 | 39.526 | 253 | 111 | 10 | 73 | 294 | 11 | 252 | 5.21e-35 | 128 |
| Msa0058700 | MtrunA17_Chr1g0169431 | 78.873 | 71 | 15 | 0 | 229 | 299 | 171 | 241 | 7.85e-35 | 127 |
| Msa0058700 | MtrunA17_Chr5g0395391 | 74.648 | 71 | 18 | 0 | 229 | 299 | 269 | 339 | 5.58e-33 | 125 |
| Msa0058700 | MtrunA17_Chr5g0395391 | 39.234 | 209 | 94 | 4 | 101 | 300 | 54 | 238 | 9.44e-29 | 113 |
| Msa0058700 | MtrunA17_Chr1g0213161 | 55.963 | 109 | 43 | 2 | 209 | 316 | 130 | 234 | 3.73e-32 | 120 |
| Msa0058700 | MtrunA17_Chr2g0326771 | 76.923 | 65 | 15 | 0 | 230 | 294 | 216 | 280 | 1.37e-31 | 120 |
| Msa0058700 | MtrunA17_Chr4g0028961 | 73.134 | 67 | 18 | 0 | 230 | 296 | 232 | 298 | 6.51e-31 | 119 |
| Msa0058700 | MtrunA17_Chr7g0232671 | 62.903 | 62 | 23 | 0 | 230 | 291 | 187 | 248 | 2.73e-21 | 91.3 |
| Msa0058700 | MtrunA17_Chr7g0232701 | 58.065 | 62 | 26 | 0 | 230 | 291 | 73 | 134 | 2.73e-19 | 82.8 |
| Msa0058700 | MtrunA17_Chr7g0232681 | 33.495 | 206 | 105 | 8 | 88 | 291 | 18 | 193 | 3.85e-19 | 84.3 |
| Msa0058700 | MtrunA17_Chr7g0271861 | 70.588 | 34 | 10 | 0 | 232 | 265 | 24 | 57 | 2.10e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058700 | AT5G25830.1 | 56.981 | 265 | 97 | 7 | 93 | 340 | 67 | 331 | 6.59e-92 | 278 |
| Msa0058700 | AT4G32890.1 | 43.881 | 335 | 131 | 9 | 21 | 340 | 16 | 308 | 4.66e-80 | 246 |
| Msa0058700 | AT3G60530.1 | 48.309 | 207 | 63 | 6 | 93 | 298 | 63 | 226 | 3.36e-49 | 165 |
| Msa0058700 | AT2G45050.1 | 45.175 | 228 | 89 | 7 | 89 | 310 | 60 | 257 | 5.02e-49 | 165 |
| Msa0058700 | AT4G36240.1 | 37.544 | 285 | 106 | 9 | 22 | 297 | 10 | 231 | 1.26e-39 | 140 |
| Msa0058700 | AT5G66320.2 | 38.519 | 270 | 116 | 8 | 69 | 312 | 86 | 331 | 3.48e-39 | 142 |
| Msa0058700 | AT5G66320.1 | 38.519 | 270 | 116 | 8 | 69 | 312 | 86 | 331 | 3.48e-39 | 142 |
| Msa0058700 | AT4G34680.1 | 39.171 | 217 | 81 | 5 | 90 | 299 | 77 | 249 | 3.57e-37 | 134 |
| Msa0058700 | AT4G34680.2 | 39.171 | 217 | 81 | 5 | 90 | 299 | 77 | 249 | 3.57e-37 | 134 |
| Msa0058700 | AT3G24050.1 | 74.286 | 70 | 18 | 0 | 229 | 298 | 193 | 262 | 2.78e-33 | 124 |
| Msa0058700 | AT1G08010.2 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0058700 | AT1G08010.1 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0058700 | AT1G08010.3 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0058700 | AT1G08000.2 | 70.833 | 72 | 21 | 0 | 225 | 296 | 213 | 284 | 3.78e-31 | 119 |
| Msa0058700 | AT1G08000.1 | 70.833 | 72 | 21 | 0 | 225 | 296 | 213 | 284 | 3.78e-31 | 119 |
| Msa0058700 | AT3G54810.1 | 62.963 | 81 | 30 | 0 | 230 | 310 | 229 | 309 | 6.51e-31 | 119 |
| Msa0058700 | AT3G54810.2 | 62.963 | 81 | 30 | 0 | 230 | 310 | 229 | 309 | 6.51e-31 | 119 |
| Msa0058700 | AT3G51080.1 | 72.464 | 69 | 19 | 0 | 230 | 298 | 221 | 289 | 1.42e-29 | 115 |
| Msa0058700 | AT2G28340.1 | 69.841 | 63 | 19 | 0 | 232 | 294 | 193 | 255 | 1.38e-26 | 107 |
| Msa0058700 | AT3G45170.1 | 64.179 | 67 | 24 | 0 | 232 | 298 | 117 | 183 | 2.60e-26 | 104 |
Find 117 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCACTGTCCTTTCTTCT+TGG | 0.090798 | 1_2:+15219190 | None:intergenic |
| CCAATATCAGGAACGACATT+AGG | 0.287162 | 1_2:+15220056 | None:intergenic |
| GCAGTCTTTGCCTGCTTCCT+TGG | 0.291400 | 1_2:+15219214 | None:intergenic |
| TACTCTGATGTTGTAAAATC+TGG | 0.292416 | 1_2:+15218912 | None:intergenic |
| TATATTCAACAAGGAAGTTT+TGG | 0.298704 | 1_2:-15219380 | Msa0058700:CDS |
| CTAGCTGCAGGCCTGTATTC+AGG | 0.333508 | 1_2:+15219034 | None:intergenic |
| CTCCGGAGACCTGTGTGTTC+CGG | 0.345236 | 1_2:-15220006 | Msa0058700:intron |
| CAAAAGATGCAACTGATATC+AGG | 0.358334 | 1_2:-15219466 | Msa0058700:CDS |
| CCTAATGTCGTTCCTGATAT+TGG | 0.361673 | 1_2:-15220056 | Msa0058700:CDS |
| AAAACTTCCTTGTTGAATAT+AGG | 0.362486 | 1_2:+15219382 | None:intergenic |
| GAAATAGGAGGATGCTTTAC+GGG | 0.365602 | 1_2:-15219542 | Msa0058700:intron |
| CGACGTCATTGTTGAGGTTA+AGG | 0.370723 | 1_2:+15220201 | None:intergenic |
| TGTTGAATATAGGACTGTTT+CGG | 0.382615 | 1_2:+15219392 | None:intergenic |
| AAGACACCACAATGGCGAAC+CGG | 0.386976 | 1_2:-15219121 | Msa0058700:CDS |
| ACGATGCGAGTTGGAGTGTT+TGG | 0.387998 | 1_2:+15218994 | None:intergenic |
| AAATTCTGACAGCCAATATC+AGG | 0.389939 | 1_2:+15220044 | None:intergenic |
| TGAAATAGGAGGATGCTTTA+CGG | 0.392306 | 1_2:-15219543 | Msa0058700:intron |
| TTACTTGATTCACCAACATA+TGG | 0.405233 | 1_2:-15218861 | Msa0058700:CDS |
| AGGACTGTTTCGGTTGGGTT+GGG | 0.406165 | 1_2:+15219402 | None:intergenic |
| GTTGGGTTGGGAAAGCTCAC+GGG | 0.412320 | 1_2:+15219414 | None:intergenic |
| CAATGGCGAACCGGGCCTAA+TGG | 0.414512 | 1_2:-15219112 | Msa0058700:CDS |
| CACACAGGTCTCCGGAGAAA+TGG | 0.416213 | 1_2:+15220012 | None:intergenic |
| CACGGTAACGGTGGAGGAAG+AGG | 0.434827 | 1_2:+15220118 | None:intergenic |
| GAGGCAGAAGGAAATGTTGC+GGG | 0.440244 | 1_2:-15218954 | Msa0058700:CDS |
| CAATATCAGGAACGACATTA+GGG | 0.440367 | 1_2:+15220057 | None:intergenic |
| CTCTTGCTACGGGCCTTAGC+TGG | 0.442400 | 1_2:+15219355 | None:intergenic |
| TGTCGGAGGAAAAGGTGGTT+TGG | 0.443866 | 1_2:+15220258 | None:intergenic |
| GGTTGGGTTGGGAAAGCTCA+CGG | 0.448750 | 1_2:+15219413 | None:intergenic |
| TACATCATCTGCCTAAAATC+AGG | 0.450652 | 1_2:+15218836 | None:intergenic |
| GCTCACGGGGTTCTTCGTCC+TGG | 0.451765 | 1_2:+15219428 | None:intergenic |
| AACAGTGACGGTAGGTAAGA+TGG | 0.455172 | 1_2:+15219237 | None:intergenic |
| AAGGACAGTGACGGAGGGTC+AGG | 0.457760 | 1_2:-15219181 | Msa0058700:CDS |
| AATATAGGACTGTTTCGGTT+GGG | 0.459476 | 1_2:+15219397 | None:intergenic |
| TAGGACTGTTTCGGTTGGGT+TGG | 0.462649 | 1_2:+15219401 | None:intergenic |
| AGTGTTGTTGTCGGAGGAAA+AGG | 0.462952 | 1_2:+15220250 | None:intergenic |
| TACTTGATTCACCAACATAT+GGG | 0.466490 | 1_2:-15218860 | Msa0058700:CDS |
| CAACATTGGAAAGCCATTCC+AGG | 0.469957 | 1_2:+15219518 | None:intergenic |
| GTCGATTGGTGCCTGAATAC+AGG | 0.470023 | 1_2:-15219045 | Msa0058700:CDS |
| AGACACCACAATGGCGAACC+GGG | 0.471491 | 1_2:-15219120 | Msa0058700:CDS |
| GCCCACGAGTCCTCTTGCTA+CGG | 0.473059 | 1_2:+15219344 | None:intergenic |
| GGAGGATGCTTTACGGGACC+TGG | 0.481852 | 1_2:-15219536 | Msa0058700:CDS |
| GAATATAGGACTGTTTCGGT+TGG | 0.481982 | 1_2:+15219396 | None:intergenic |
| GTTAGCTCGTCATCATTGTC+CGG | 0.486841 | 1_2:-15220086 | Msa0058700:CDS |
| ATGCTTTACGGGACCTGGAA+TGG | 0.494601 | 1_2:-15219531 | Msa0058700:CDS |
| GACGTGAGCTCCAGTCGCAA+GGG | 0.498267 | 1_2:+15219320 | None:intergenic |
| AATCAAGTAATCATCATTGT+TGG | 0.499207 | 1_2:+15218874 | None:intergenic |
| TGTTTGGTCAGCACAAATGT+AGG | 0.504596 | 1_2:+15219010 | None:intergenic |
| AAGGTTGGTGTCGGAAATGA+TGG | 0.507635 | 1_2:+15220166 | None:intergenic |
| GGTGGTTTGGAAAATGTTGT+TGG | 0.508256 | 1_2:+15220271 | None:intergenic |
| GACGGAGGGTCAGGCGGAGA+TGG | 0.508386 | 1_2:-15219172 | Msa0058700:CDS |
| TACCGACAATTTCATTGTTG+AGG | 0.524862 | 1_2:-15220228 | Msa0058700:CDS |
| AAACGATTCCTCAACAACAT+TGG | 0.525151 | 1_2:+15219504 | None:intergenic |
| TACCGGAACACACAGGTCTC+CGG | 0.525459 | 1_2:+15220004 | None:intergenic |
| ATTGACCACGGTAACGGTGG+AGG | 0.527850 | 1_2:+15220112 | None:intergenic |
| GCCCGTAGCAAGAGGACTCG+TGG | 0.533598 | 1_2:-15219346 | Msa0058700:CDS |
| ACAGTGACGGTAGGTAAGAT+GGG | 0.534314 | 1_2:+15219238 | None:intergenic |
| AAGATACAAGTCGGGTCGAT+TGG | 0.534399 | 1_2:-15219059 | Msa0058700:CDS |
| TTCCGACACCAACCTTGACT+CGG | 0.534554 | 1_2:-15220159 | Msa0058700:CDS |
| AGGCATGAAGGTGCGAAACC+AGG | 0.535516 | 1_2:-15219446 | Msa0058700:CDS |
| CCCACGAGTCCTCTTGCTAC+GGG | 0.537511 | 1_2:+15219345 | None:intergenic |
| GTTGTTGTCGGAGGAAAAGG+TGG | 0.541025 | 1_2:+15220253 | None:intergenic |
| GAGGGTCAGGCGGAGATGGT+CGG | 0.543329 | 1_2:-15219168 | Msa0058700:CDS |
| CGTCACTGTTCCAAGGAAGC+AGG | 0.545318 | 1_2:-15219224 | Msa0058700:CDS |
| CAACACTTTACGATGCGAGT+TGG | 0.550252 | 1_2:+15218985 | None:intergenic |
| GTTGGAGCTGCGGAGGCAGA+AGG | 0.550943 | 1_2:-15218966 | Msa0058700:CDS |
| GACAGTGACGGAGGGTCAGG+CGG | 0.554731 | 1_2:-15219178 | Msa0058700:CDS |
| AAAGACTGCTCCAAGAAGAA+AGG | 0.555772 | 1_2:-15219200 | Msa0058700:CDS |
| AACGCTATTGACCACGGTAA+CGG | 0.557909 | 1_2:+15220106 | None:intergenic |
| ACAAATGTAGGGCTAGCTGC+AGG | 0.560737 | 1_2:+15219022 | None:intergenic |
| AGACGTGAGCTCCAGTCGCA+AGG | 0.560751 | 1_2:+15219319 | None:intergenic |
| GGTCAGGCGGAGATGGTCGG+AGG | 0.561308 | 1_2:-15219165 | Msa0058700:CDS |
| GTCCTCAACAATGAAATTGT+CGG | 0.566137 | 1_2:+15220226 | None:intergenic |
| TAAAATCAGGTCCCATATGT+TGG | 0.573858 | 1_2:+15218849 | None:intergenic |
| GTTTGGTCAGCACAAATGTA+GGG | 0.574012 | 1_2:+15219011 | None:intergenic |
| CCCGTAGCAAGAGGACTCGT+GGG | 0.574146 | 1_2:-15219345 | Msa0058700:CDS |
| ATCGTAAAGTGTTGGAGCTG+CGG | 0.574417 | 1_2:-15218976 | Msa0058700:CDS |
| TTGGGTTGGGAAAGCTCACG+GGG | 0.578980 | 1_2:+15219415 | None:intergenic |
| CAGCTAAGGCCCGTAGCAAG+AGG | 0.579929 | 1_2:-15219354 | Msa0058700:CDS |
| GGCCGAGTCAAGGTTGGTGT+CGG | 0.584263 | 1_2:+15220157 | None:intergenic |
| TTAGGCCCGGTTCGCCATTG+TGG | 0.587065 | 1_2:+15219115 | None:intergenic |
| TTAGCTCGTCATCATTGTCC+GGG | 0.587117 | 1_2:-15220085 | Msa0058700:CDS |
| GCAACTGATATCAGGCATGA+AGG | 0.589173 | 1_2:-15219458 | Msa0058700:CDS |
| TTGTGGTGTAAGATACAAGT+CGG | 0.589234 | 1_2:-15219068 | Msa0058700:CDS |
| AGTTGACTGTGGCCGAGTCA+AGG | 0.589310 | 1_2:+15220147 | None:intergenic |
| CTGCTTCCTTGGAACAGTGA+CGG | 0.590093 | 1_2:+15219225 | None:intergenic |
| ATTCCCTACGTAGGAATGGA+AGG | 0.590186 | 1_2:-15220299 | None:intergenic |
| ATTGTCGGTAGTGTTGTTGT+CGG | 0.590207 | 1_2:+15220241 | None:intergenic |
| GTCGGTAGTGTTGTTGTCGG+AGG | 0.590547 | 1_2:+15220244 | None:intergenic |
| TACCTACCGTCACTGTTCCA+AGG | 0.593877 | 1_2:-15219231 | Msa0058700:CDS |
| CGTCGTCGACGTCATTGTTG+AGG | 0.596242 | 1_2:+15220195 | None:intergenic |
| ATGGCTTTCCAATGTTGTTG+AGG | 0.597478 | 1_2:-15219512 | Msa0058700:CDS |
| AACGACATTAGGGTCGCACC+CGG | 0.603894 | 1_2:+15220067 | None:intergenic |
| CAACTCGCATCGTAAAGTGT+TGG | 0.604228 | 1_2:-15218984 | Msa0058700:CDS |
| CTCTTCCTCCACCGTTACCG+TGG | 0.606184 | 1_2:-15220117 | Msa0058700:CDS |
| TGTGGTGTAAGATACAAGTC+GGG | 0.608929 | 1_2:-15219067 | Msa0058700:CDS |
| CGTCATTGTTGAGGTTAAGG+AGG | 0.612987 | 1_2:+15220204 | None:intergenic |
| GACTGTGGCCGAGTCAAGGT+TGG | 0.614521 | 1_2:+15220151 | None:intergenic |
| GTAAAGTGTTGGAGCTGCGG+AGG | 0.616605 | 1_2:-15218973 | Msa0058700:CDS |
| ACGTGAGCTCCAGTCGCAAG+GGG | 0.619626 | 1_2:+15219321 | None:intergenic |
| AACACCGTCTTCTTCTGAGT+CGG | 0.619749 | 1_2:-15219278 | Msa0058700:CDS |
| GCTATTGACCACGGTAACGG+TGG | 0.631846 | 1_2:+15220109 | None:intergenic |
| GAAGAAAGGACAGTGACGGA+GGG | 0.637953 | 1_2:-15219186 | Msa0058700:CDS |
| AAAACATTATGCAACGCTTG+TGG | 0.638941 | 1_2:-15219085 | Msa0058700:CDS |
| CAGTGACGGTAGGTAAGATG+GGG | 0.639748 | 1_2:+15219239 | None:intergenic |
| CCAAGAAGAAAGGACAGTGA+CGG | 0.640630 | 1_2:-15219190 | Msa0058700:CDS |
| AGAAGAAAGGACAGTGACGG+AGG | 0.643844 | 1_2:-15219187 | Msa0058700:CDS |
| GGAGGCAGAAGGAAATGTTG+CGG | 0.674514 | 1_2:-15218955 | Msa0058700:CDS |
| TTCCTTGGAACAGTGACGGT+AGG | 0.684302 | 1_2:+15219229 | None:intergenic |
| GGTAACGGTGGAGGAAGAGG+CGG | 0.684503 | 1_2:+15220121 | None:intergenic |
| TATAATATACCGGAACACAC+AGG | 0.691414 | 1_2:+15219997 | None:intergenic |
| AAACAGTCCTATATTCAACA+AGG | 0.707758 | 1_2:-15219389 | Msa0058700:CDS |
| AGTTCCGACTCAGAAGAAGA+CGG | 0.714701 | 1_2:+15219274 | None:intergenic |
| CGAGCTAACGCTATTGACCA+CGG | 0.719172 | 1_2:+15220100 | None:intergenic |
| CGTGAGCTCCAGTCGCAAGG+GGG | 0.723454 | 1_2:+15219322 | None:intergenic |
| TGACAGACAAGACACCACAA+TGG | 0.724676 | 1_2:-15219129 | Msa0058700:CDS |
| AGAGGCGGTTGAGTTGACTG+TGG | 0.744548 | 1_2:+15220136 | None:intergenic |
| AGTGACGGTAGGTAAGATGG+GGG | 0.768674 | 1_2:+15219240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATACACATATAATATAC+CGG | + | chr1_2:15219135-15219154 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | + | chr1_2:15219434-15219453 | None:intergenic | 20.0% |
| !! | CATATACACATATAATATAC+CGG | + | chr1_2:15219135-15219154 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | + | chr1_2:15219434-15219453 | None:intergenic | 20.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | + | chr1_2:15219316-15219335 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTCCTGAAATTAT+TGG | + | chr1_2:15219326-15219345 | None:intergenic | 25.0% |
| !! | TCTGTGTTGAAATTTGAAAT+AGG | - | chr1_2:15219562-15219581 | Msa0058700:intron | 25.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | + | chr1_2:15219740-15219759 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | - | chr1_2:15219739-15219758 | Msa0058700:intron | 25.0% |
| ! | AATCAAGTAATCATCATTGT+TGG | + | chr1_2:15220248-15220267 | None:intergenic | 25.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | + | chr1_2:15219316-15219335 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTCCTGAAATTAT+TGG | + | chr1_2:15219326-15219345 | None:intergenic | 25.0% |
| !! | TCTGTGTTGAAATTTGAAAT+AGG | - | chr1_2:15219562-15219581 | Msa0058700:intron | 25.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | + | chr1_2:15219740-15219759 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | - | chr1_2:15219739-15219758 | Msa0058700:intron | 25.0% |
| ! | AATCAAGTAATCATCATTGT+TGG | + | chr1_2:15220248-15220267 | None:intergenic | 25.0% |
| ! | GCATGAGTTAGAAATTTTCA+TGG | + | chr1_2:15219251-15219270 | None:intergenic | 30.0% |
| CCTGAAATTATTGGCAAAAA+AGG | + | chr1_2:15219317-15219336 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | - | chr1_2:15219314-15219333 | Msa0058700:CDS | 30.0% |
| TAGGCTAAATACAACAGAAT+GGG | - | chr1_2:15219353-15219372 | Msa0058700:CDS | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | - | chr1_2:15219528-15219547 | Msa0058700:CDS | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | - | chr1_2:15219565-15219584 | Msa0058700:intron | 30.0% |
| TGTTGAATATAGGACTGTTT+CGG | + | chr1_2:15219730-15219749 | None:intergenic | 30.0% | |
| AAACAGTCCTATATTCAACA+AGG | - | chr1_2:15219730-15219749 | Msa0058700:intron | 30.0% | |
| !!! | GTTGTAAAATCTGGTTTTGT+TGG | + | chr1_2:15220201-15220220 | None:intergenic | 30.0% |
| TACTCTGATGTTGTAAAATC+TGG | + | chr1_2:15220210-15220229 | None:intergenic | 30.0% | |
| TTACTTGATTCACCAACATA+TGG | - | chr1_2:15220258-15220277 | Msa0058700:CDS | 30.0% | |
| TACTTGATTCACCAACATAT+GGG | - | chr1_2:15220259-15220278 | Msa0058700:CDS | 30.0% | |
| ! | GCATGAGTTAGAAATTTTCA+TGG | + | chr1_2:15219251-15219270 | None:intergenic | 30.0% |
| CCTGAAATTATTGGCAAAAA+AGG | + | chr1_2:15219317-15219336 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | - | chr1_2:15219314-15219333 | Msa0058700:CDS | 30.0% |
| TAGGCTAAATACAACAGAAT+GGG | - | chr1_2:15219353-15219372 | Msa0058700:CDS | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | - | chr1_2:15219528-15219547 | Msa0058700:CDS | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | - | chr1_2:15219565-15219584 | Msa0058700:intron | 30.0% |
| TGTTGAATATAGGACTGTTT+CGG | + | chr1_2:15219730-15219749 | None:intergenic | 30.0% | |
| AAACAGTCCTATATTCAACA+AGG | - | chr1_2:15219730-15219749 | Msa0058700:intron | 30.0% | |
| !!! | GTTGTAAAATCTGGTTTTGT+TGG | + | chr1_2:15220201-15220220 | None:intergenic | 30.0% |
| TACTCTGATGTTGTAAAATC+TGG | + | chr1_2:15220210-15220229 | None:intergenic | 30.0% | |
| TTACTTGATTCACCAACATA+TGG | - | chr1_2:15220258-15220277 | Msa0058700:CDS | 30.0% | |
| TACTTGATTCACCAACATAT+GGG | - | chr1_2:15220259-15220278 | Msa0058700:CDS | 30.0% | |
| TACCGACAATTTCATTGTTG+AGG | - | chr1_2:15218891-15218910 | Msa0058700:CDS | 35.0% | |
| GTCCTCAACAATGAAATTGT+CGG | + | chr1_2:15218896-15218915 | None:intergenic | 35.0% | |
| CAATATCAGGAACGACATTA+GGG | + | chr1_2:15219065-15219084 | None:intergenic | 35.0% | |
| AAATTCTGACAGCCAATATC+AGG | + | chr1_2:15219078-15219097 | None:intergenic | 35.0% | |
| TATAATATACCGGAACACAC+AGG | + | chr1_2:15219125-15219144 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | - | chr1_2:15219334-15219353 | Msa0058700:CDS | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | - | chr1_2:15219352-15219371 | Msa0058700:CDS | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | - | chr1_2:15219354-15219373 | Msa0058700:CDS | 35.0% | |
| TGAAATAGGAGGATGCTTTA+CGG | - | chr1_2:15219576-15219595 | Msa0058700:intron | 35.0% | |
| AAACGATTCCTCAACAACAT+TGG | + | chr1_2:15219618-15219637 | None:intergenic | 35.0% | |
| CAAAAGATGCAACTGATATC+AGG | - | chr1_2:15219653-15219672 | Msa0058700:intron | 35.0% | |
| AATATAGGACTGTTTCGGTT+GGG | + | chr1_2:15219725-15219744 | None:intergenic | 35.0% | |
| !! | AAGCGTTGCATAATGTTTTC+GGG | + | chr1_2:15220033-15220052 | None:intergenic | 35.0% |
| !! | CAAGCGTTGCATAATGTTTT+CGG | + | chr1_2:15220034-15220053 | None:intergenic | 35.0% |
| AAAACATTATGCAACGCTTG+TGG | - | chr1_2:15220034-15220053 | Msa0058700:CDS | 35.0% | |
| TTGTGGTGTAAGATACAAGT+CGG | - | chr1_2:15220051-15220070 | Msa0058700:CDS | 35.0% | |
| !!! | AAATCTGGTTTTGTTGGTGT+TGG | + | chr1_2:15220195-15220214 | None:intergenic | 35.0% |
| TAAAATCAGGTCCCATATGT+TGG | + | chr1_2:15220273-15220292 | None:intergenic | 35.0% | |
| ! | AACATATGGGACCTGATTTT+AGG | - | chr1_2:15220272-15220291 | Msa0058700:CDS | 35.0% |
| TACATCATCTGCCTAAAATC+AGG | + | chr1_2:15220286-15220305 | None:intergenic | 35.0% | |
| TACCGACAATTTCATTGTTG+AGG | - | chr1_2:15218891-15218910 | Msa0058700:CDS | 35.0% | |
| GTCCTCAACAATGAAATTGT+CGG | + | chr1_2:15218896-15218915 | None:intergenic | 35.0% | |
| CAATATCAGGAACGACATTA+GGG | + | chr1_2:15219065-15219084 | None:intergenic | 35.0% | |
| AAATTCTGACAGCCAATATC+AGG | + | chr1_2:15219078-15219097 | None:intergenic | 35.0% | |
| TATAATATACCGGAACACAC+AGG | + | chr1_2:15219125-15219144 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | - | chr1_2:15219334-15219353 | Msa0058700:CDS | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | - | chr1_2:15219352-15219371 | Msa0058700:CDS | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | - | chr1_2:15219354-15219373 | Msa0058700:CDS | 35.0% | |
| TGAAATAGGAGGATGCTTTA+CGG | - | chr1_2:15219576-15219595 | Msa0058700:intron | 35.0% | |
| AAACGATTCCTCAACAACAT+TGG | + | chr1_2:15219618-15219637 | None:intergenic | 35.0% | |
| CAAAAGATGCAACTGATATC+AGG | - | chr1_2:15219653-15219672 | Msa0058700:intron | 35.0% | |
| AATATAGGACTGTTTCGGTT+GGG | + | chr1_2:15219725-15219744 | None:intergenic | 35.0% | |
| !! | AAGCGTTGCATAATGTTTTC+GGG | + | chr1_2:15220033-15220052 | None:intergenic | 35.0% |
| !! | CAAGCGTTGCATAATGTTTT+CGG | + | chr1_2:15220034-15220053 | None:intergenic | 35.0% |
| AAAACATTATGCAACGCTTG+TGG | - | chr1_2:15220034-15220053 | Msa0058700:CDS | 35.0% | |
| TTGTGGTGTAAGATACAAGT+CGG | - | chr1_2:15220051-15220070 | Msa0058700:CDS | 35.0% | |
| !!! | AAATCTGGTTTTGTTGGTGT+TGG | + | chr1_2:15220195-15220214 | None:intergenic | 35.0% |
| TAAAATCAGGTCCCATATGT+TGG | + | chr1_2:15220273-15220292 | None:intergenic | 35.0% | |
| ! | AACATATGGGACCTGATTTT+AGG | - | chr1_2:15220272-15220291 | Msa0058700:CDS | 35.0% |
| TACATCATCTGCCTAAAATC+AGG | + | chr1_2:15220286-15220305 | None:intergenic | 35.0% | |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | + | chr1_2:15218851-15218870 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | + | chr1_2:15218881-15218900 | None:intergenic | 40.0% |
| CCAATATCAGGAACGACATT+AGG | + | chr1_2:15219066-15219085 | None:intergenic | 40.0% | |
| CCTAATGTCGTTCCTGATAT+TGG | - | chr1_2:15219063-15219082 | Msa0058700:CDS | 40.0% | |
| ! | TTTTCTGACAGCCATTTCTC+CGG | - | chr1_2:15219096-15219115 | Msa0058700:CDS | 40.0% |
| GAAATAGGAGGATGCTTTAC+GGG | - | chr1_2:15219577-15219596 | Msa0058700:intron | 40.0% | |
| ATGGCTTTCCAATGTTGTTG+AGG | - | chr1_2:15219607-15219626 | Msa0058700:intron | 40.0% | |
| GAATATAGGACTGTTTCGGT+TGG | + | chr1_2:15219726-15219745 | None:intergenic | 40.0% | |
| AAAGACTGCTCCAAGAAGAA+AGG | - | chr1_2:15219919-15219938 | Msa0058700:intron | 40.0% | |
| !! | CATAATGTTTTCGGGCCATT+AGG | + | chr1_2:15220025-15220044 | None:intergenic | 40.0% |
| TGTGGTGTAAGATACAAGTC+GGG | - | chr1_2:15220052-15220071 | Msa0058700:CDS | 40.0% | |
| GTTTGGTCAGCACAAATGTA+GGG | + | chr1_2:15220111-15220130 | None:intergenic | 40.0% | |
| TGTTTGGTCAGCACAAATGT+AGG | + | chr1_2:15220112-15220131 | None:intergenic | 40.0% | |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | + | chr1_2:15218851-15218870 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | + | chr1_2:15218881-15218900 | None:intergenic | 40.0% |
| CCAATATCAGGAACGACATT+AGG | + | chr1_2:15219066-15219085 | None:intergenic | 40.0% | |
| CCTAATGTCGTTCCTGATAT+TGG | - | chr1_2:15219063-15219082 | Msa0058700:CDS | 40.0% | |
| ! | TTTTCTGACAGCCATTTCTC+CGG | - | chr1_2:15219096-15219115 | Msa0058700:CDS | 40.0% |
| GAAATAGGAGGATGCTTTAC+GGG | - | chr1_2:15219577-15219596 | Msa0058700:intron | 40.0% | |
| ATGGCTTTCCAATGTTGTTG+AGG | - | chr1_2:15219607-15219626 | Msa0058700:intron | 40.0% | |
| GAATATAGGACTGTTTCGGT+TGG | + | chr1_2:15219726-15219745 | None:intergenic | 40.0% | |
| AAAGACTGCTCCAAGAAGAA+AGG | - | chr1_2:15219919-15219938 | Msa0058700:intron | 40.0% | |
| !! | CATAATGTTTTCGGGCCATT+AGG | + | chr1_2:15220025-15220044 | None:intergenic | 40.0% |
| TGTGGTGTAAGATACAAGTC+GGG | - | chr1_2:15220052-15220071 | Msa0058700:CDS | 40.0% | |
| GTTTGGTCAGCACAAATGTA+GGG | + | chr1_2:15220111-15220130 | None:intergenic | 40.0% | |
| TGTTTGGTCAGCACAAATGT+AGG | + | chr1_2:15220112-15220131 | None:intergenic | 40.0% | |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | + | chr1_2:15218872-15218891 | None:intergenic | 45.0% |
| CGTCATTGTTGAGGTTAAGG+AGG | + | chr1_2:15218918-15218937 | None:intergenic | 45.0% | |
| CGACGTCATTGTTGAGGTTA+AGG | + | chr1_2:15218921-15218940 | None:intergenic | 45.0% | |
| !! | AAGGTTGGTGTCGGAAATGA+TGG | + | chr1_2:15218956-15218975 | None:intergenic | 45.0% |
| AACGCTATTGACCACGGTAA+CGG | + | chr1_2:15219016-15219035 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | - | chr1_2:15219033-15219052 | Msa0058700:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | - | chr1_2:15219034-15219053 | Msa0058700:CDS | 45.0% | |
| ACAGAATGGGGCACATTTCA+CGG | - | chr1_2:15219366-15219385 | Msa0058700:CDS | 45.0% | |
| CAACATTGGAAAGCCATTCC+AGG | + | chr1_2:15219604-15219623 | None:intergenic | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | - | chr1_2:15219625-15219644 | Msa0058700:intron | 45.0% |
| GCAACTGATATCAGGCATGA+AGG | - | chr1_2:15219661-15219680 | Msa0058700:intron | 45.0% | |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | - | chr1_2:15219751-15219770 | Msa0058700:intron | 45.0% |
| AACACCGTCTTCTTCTGAGT+CGG | - | chr1_2:15219841-15219860 | Msa0058700:intron | 45.0% | |
| AGTTCCGACTCAGAAGAAGA+CGG | + | chr1_2:15219848-15219867 | None:intergenic | 45.0% | |
| ACAGTGACGGTAGGTAAGAT+GGG | + | chr1_2:15219884-15219903 | None:intergenic | 45.0% | |
| AACAGTGACGGTAGGTAAGA+TGG | + | chr1_2:15219885-15219904 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGGACAGTGA+CGG | - | chr1_2:15219929-15219948 | Msa0058700:intron | 45.0% | |
| TGACAGACAAGACACCACAA+TGG | - | chr1_2:15219990-15220009 | Msa0058700:intron | 45.0% | |
| AAGATACAAGTCGGGTCGAT+TGG | - | chr1_2:15220060-15220079 | Msa0058700:CDS | 45.0% | |
| CAACACTTTACGATGCGAGT+TGG | + | chr1_2:15220137-15220156 | None:intergenic | 45.0% | |
| CAACTCGCATCGTAAAGTGT+TGG | - | chr1_2:15220135-15220154 | Msa0058700:CDS | 45.0% | |
| !! | ATCGTAAAGTGTTGGAGCTG+CGG | - | chr1_2:15220143-15220162 | Msa0058700:CDS | 45.0% |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | + | chr1_2:15218872-15218891 | None:intergenic | 45.0% |
| CGTCATTGTTGAGGTTAAGG+AGG | + | chr1_2:15218918-15218937 | None:intergenic | 45.0% | |
| CGACGTCATTGTTGAGGTTA+AGG | + | chr1_2:15218921-15218940 | None:intergenic | 45.0% | |
| !! | AAGGTTGGTGTCGGAAATGA+TGG | + | chr1_2:15218956-15218975 | None:intergenic | 45.0% |
| AACGCTATTGACCACGGTAA+CGG | + | chr1_2:15219016-15219035 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | - | chr1_2:15219033-15219052 | Msa0058700:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | - | chr1_2:15219034-15219053 | Msa0058700:CDS | 45.0% | |
| ACAGAATGGGGCACATTTCA+CGG | - | chr1_2:15219366-15219385 | Msa0058700:CDS | 45.0% | |
| CAACATTGGAAAGCCATTCC+AGG | + | chr1_2:15219604-15219623 | None:intergenic | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | - | chr1_2:15219625-15219644 | Msa0058700:intron | 45.0% |
| GCAACTGATATCAGGCATGA+AGG | - | chr1_2:15219661-15219680 | Msa0058700:intron | 45.0% | |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | - | chr1_2:15219751-15219770 | Msa0058700:intron | 45.0% |
| AACACCGTCTTCTTCTGAGT+CGG | - | chr1_2:15219841-15219860 | Msa0058700:intron | 45.0% | |
| AGTTCCGACTCAGAAGAAGA+CGG | + | chr1_2:15219848-15219867 | None:intergenic | 45.0% | |
| ACAGTGACGGTAGGTAAGAT+GGG | + | chr1_2:15219884-15219903 | None:intergenic | 45.0% | |
| AACAGTGACGGTAGGTAAGA+TGG | + | chr1_2:15219885-15219904 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGGACAGTGA+CGG | - | chr1_2:15219929-15219948 | Msa0058700:intron | 45.0% | |
| TGACAGACAAGACACCACAA+TGG | - | chr1_2:15219990-15220009 | Msa0058700:intron | 45.0% | |
| AAGATACAAGTCGGGTCGAT+TGG | - | chr1_2:15220060-15220079 | Msa0058700:CDS | 45.0% | |
| CAACACTTTACGATGCGAGT+TGG | + | chr1_2:15220137-15220156 | None:intergenic | 45.0% | |
| CAACTCGCATCGTAAAGTGT+TGG | - | chr1_2:15220135-15220154 | Msa0058700:CDS | 45.0% | |
| !! | ATCGTAAAGTGTTGGAGCTG+CGG | - | chr1_2:15220143-15220162 | Msa0058700:CDS | 45.0% |
| TGTCGGAGGAAAAGGTGGTT+TGG | + | chr1_2:15218864-15218883 | None:intergenic | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | + | chr1_2:15218869-15218888 | None:intergenic | 50.0% | |
| TTCCGACACCAACCTTGACT+CGG | - | chr1_2:15218960-15218979 | Msa0058700:CDS | 50.0% | |
| CGAGCTAACGCTATTGACCA+CGG | + | chr1_2:15219022-15219041 | None:intergenic | 50.0% | |
| ATGCTTTACGGGACCTGGAA+TGG | - | chr1_2:15219588-15219607 | Msa0058700:intron | 50.0% | |
| AGGACTGTTTCGGTTGGGTT+GGG | + | chr1_2:15219720-15219739 | None:intergenic | 50.0% | |
| TAGGACTGTTTCGGTTGGGT+TGG | + | chr1_2:15219721-15219740 | None:intergenic | 50.0% | |
| GTAAGATGGGGGTGGGAATA+AGG | + | chr1_2:15219871-15219890 | None:intergenic | 50.0% | |
| AGTGACGGTAGGTAAGATGG+GGG | + | chr1_2:15219882-15219901 | None:intergenic | 50.0% | |
| CAGTGACGGTAGGTAAGATG+GGG | + | chr1_2:15219883-15219902 | None:intergenic | 50.0% | |
| TACCTACCGTCACTGTTCCA+AGG | - | chr1_2:15219888-15219907 | Msa0058700:intron | 50.0% | |
| TTCCTTGGAACAGTGACGGT+AGG | + | chr1_2:15219893-15219912 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | + | chr1_2:15219897-15219916 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | + | chr1_2:15219932-15219951 | None:intergenic | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | - | chr1_2:15219932-15219951 | Msa0058700:intron | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | - | chr1_2:15219933-15219952 | Msa0058700:intron | 50.0% |
| AAGACACCACAATGGCGAAC+CGG | - | chr1_2:15219998-15220017 | Msa0058700:intron | 50.0% | |
| ! | GTCGATTGGTGCCTGAATAC+AGG | - | chr1_2:15220074-15220093 | Msa0058700:CDS | 50.0% |
| !! | ACAAATGTAGGGCTAGCTGC+AGG | + | chr1_2:15220100-15220119 | None:intergenic | 50.0% |
| ! | ACGATGCGAGTTGGAGTGTT+TGG | + | chr1_2:15220128-15220147 | None:intergenic | 50.0% |
| GGAGGCAGAAGGAAATGTTG+CGG | - | chr1_2:15220164-15220183 | Msa0058700:CDS | 50.0% | |
| GAGGCAGAAGGAAATGTTGC+GGG | - | chr1_2:15220165-15220184 | Msa0058700:CDS | 50.0% | |
| TGTCGGAGGAAAAGGTGGTT+TGG | + | chr1_2:15218864-15218883 | None:intergenic | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | + | chr1_2:15218869-15218888 | None:intergenic | 50.0% | |
| TTCCGACACCAACCTTGACT+CGG | - | chr1_2:15218960-15218979 | Msa0058700:CDS | 50.0% | |
| CGAGCTAACGCTATTGACCA+CGG | + | chr1_2:15219022-15219041 | None:intergenic | 50.0% | |
| ATGCTTTACGGGACCTGGAA+TGG | - | chr1_2:15219588-15219607 | Msa0058700:intron | 50.0% | |
| AGGACTGTTTCGGTTGGGTT+GGG | + | chr1_2:15219720-15219739 | None:intergenic | 50.0% | |
| TAGGACTGTTTCGGTTGGGT+TGG | + | chr1_2:15219721-15219740 | None:intergenic | 50.0% | |
| GTAAGATGGGGGTGGGAATA+AGG | + | chr1_2:15219871-15219890 | None:intergenic | 50.0% | |
| AGTGACGGTAGGTAAGATGG+GGG | + | chr1_2:15219882-15219901 | None:intergenic | 50.0% | |
| CAGTGACGGTAGGTAAGATG+GGG | + | chr1_2:15219883-15219902 | None:intergenic | 50.0% | |
| TACCTACCGTCACTGTTCCA+AGG | - | chr1_2:15219888-15219907 | Msa0058700:intron | 50.0% | |
| TTCCTTGGAACAGTGACGGT+AGG | + | chr1_2:15219893-15219912 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | + | chr1_2:15219897-15219916 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | + | chr1_2:15219932-15219951 | None:intergenic | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | - | chr1_2:15219932-15219951 | Msa0058700:intron | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | - | chr1_2:15219933-15219952 | Msa0058700:intron | 50.0% |
| AAGACACCACAATGGCGAAC+CGG | - | chr1_2:15219998-15220017 | Msa0058700:intron | 50.0% | |
| ! | GTCGATTGGTGCCTGAATAC+AGG | - | chr1_2:15220074-15220093 | Msa0058700:CDS | 50.0% |
| !! | ACAAATGTAGGGCTAGCTGC+AGG | + | chr1_2:15220100-15220119 | None:intergenic | 50.0% |
| ! | ACGATGCGAGTTGGAGTGTT+TGG | + | chr1_2:15220128-15220147 | None:intergenic | 50.0% |
| GGAGGCAGAAGGAAATGTTG+CGG | - | chr1_2:15220164-15220183 | Msa0058700:CDS | 50.0% | |
| GAGGCAGAAGGAAATGTTGC+GGG | - | chr1_2:15220165-15220184 | Msa0058700:CDS | 50.0% | |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | + | chr1_2:15218878-15218897 | None:intergenic | 55.0% |
| CGTCGTCGACGTCATTGTTG+AGG | + | chr1_2:15218927-15218946 | None:intergenic | 55.0% | |
| AGTTGACTGTGGCCGAGTCA+AGG | + | chr1_2:15218975-15218994 | None:intergenic | 55.0% | |
| !! | AGAGGCGGTTGAGTTGACTG+TGG | + | chr1_2:15218986-15219005 | None:intergenic | 55.0% |
| ! | ATTGACCACGGTAACGGTGG+AGG | + | chr1_2:15219010-15219029 | None:intergenic | 55.0% |
| ! | GCTATTGACCACGGTAACGG+TGG | + | chr1_2:15219013-15219032 | None:intergenic | 55.0% |
| AACGACATTAGGGTCGCACC+CGG | + | chr1_2:15219055-15219074 | None:intergenic | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | + | chr1_2:15219110-15219129 | None:intergenic | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | + | chr1_2:15219118-15219137 | None:intergenic | 55.0% | |
| ! | AGGCATGAAGGTGCGAAACC+AGG | - | chr1_2:15219673-15219692 | Msa0058700:intron | 55.0% |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | + | chr1_2:15219707-15219726 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | + | chr1_2:15219708-15219727 | None:intergenic | 55.0% |
| !! | GGTTGGGTTGGGAAAGCTCA+CGG | + | chr1_2:15219709-15219728 | None:intergenic | 55.0% |
| ACGGTAGGTAAGATGGGGGT+GGG | + | chr1_2:15219878-15219897 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | - | chr1_2:15219895-15219914 | Msa0058700:intron | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | + | chr1_2:15219908-15219927 | None:intergenic | 55.0% | |
| AGACACCACAATGGCGAACC+GGG | - | chr1_2:15219999-15220018 | Msa0058700:intron | 55.0% | |
| !! | TGTTTTCGGGCCATTAGGCC+CGG | + | chr1_2:15220020-15220039 | None:intergenic | 55.0% |
| CTAGCTGCAGGCCTGTATTC+AGG | + | chr1_2:15220088-15220107 | None:intergenic | 55.0% | |
| !! | GTAAAGTGTTGGAGCTGCGG+AGG | - | chr1_2:15220146-15220165 | Msa0058700:CDS | 55.0% |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | + | chr1_2:15218878-15218897 | None:intergenic | 55.0% |
| CGTCGTCGACGTCATTGTTG+AGG | + | chr1_2:15218927-15218946 | None:intergenic | 55.0% | |
| AGTTGACTGTGGCCGAGTCA+AGG | + | chr1_2:15218975-15218994 | None:intergenic | 55.0% | |
| !! | AGAGGCGGTTGAGTTGACTG+TGG | + | chr1_2:15218986-15219005 | None:intergenic | 55.0% |
| ! | ATTGACCACGGTAACGGTGG+AGG | + | chr1_2:15219010-15219029 | None:intergenic | 55.0% |
| ! | GCTATTGACCACGGTAACGG+TGG | + | chr1_2:15219013-15219032 | None:intergenic | 55.0% |
| AACGACATTAGGGTCGCACC+CGG | + | chr1_2:15219055-15219074 | None:intergenic | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | + | chr1_2:15219110-15219129 | None:intergenic | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | + | chr1_2:15219118-15219137 | None:intergenic | 55.0% | |
| ! | AGGCATGAAGGTGCGAAACC+AGG | - | chr1_2:15219673-15219692 | Msa0058700:intron | 55.0% |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | + | chr1_2:15219707-15219726 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | + | chr1_2:15219708-15219727 | None:intergenic | 55.0% |
| !! | GGTTGGGTTGGGAAAGCTCA+CGG | + | chr1_2:15219709-15219728 | None:intergenic | 55.0% |
| ACGGTAGGTAAGATGGGGGT+GGG | + | chr1_2:15219878-15219897 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | - | chr1_2:15219895-15219914 | Msa0058700:intron | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | + | chr1_2:15219908-15219927 | None:intergenic | 55.0% | |
| AGACACCACAATGGCGAACC+GGG | - | chr1_2:15219999-15220018 | Msa0058700:intron | 55.0% | |
| !! | TGTTTTCGGGCCATTAGGCC+CGG | + | chr1_2:15220020-15220039 | None:intergenic | 55.0% |
| CTAGCTGCAGGCCTGTATTC+AGG | + | chr1_2:15220088-15220107 | None:intergenic | 55.0% | |
| !! | GTAAAGTGTTGGAGCTGCGG+AGG | - | chr1_2:15220146-15220165 | Msa0058700:CDS | 55.0% |
| !! | GGCCGAGTCAAGGTTGGTGT+CGG | + | chr1_2:15218965-15218984 | None:intergenic | 60.0% |
| GACTGTGGCCGAGTCAAGGT+TGG | + | chr1_2:15218971-15218990 | None:intergenic | 60.0% | |
| ! | GGTAACGGTGGAGGAAGAGG+CGG | + | chr1_2:15219001-15219020 | None:intergenic | 60.0% |
| ! | CACGGTAACGGTGGAGGAAG+AGG | + | chr1_2:15219004-15219023 | None:intergenic | 60.0% |
| CTCTTCCTCCACCGTTACCG+TGG | - | chr1_2:15219002-15219021 | Msa0058700:CDS | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | - | chr1_2:15219113-15219132 | Msa0058700:CDS | 60.0% | |
| GGAGGATGCTTTACGGGACC+TGG | - | chr1_2:15219583-15219602 | Msa0058700:intron | 60.0% | |
| CTCTTGCTACGGGCCTTAGC+TGG | + | chr1_2:15219767-15219786 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | - | chr1_2:15219765-15219784 | Msa0058700:intron | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | + | chr1_2:15219777-15219796 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | - | chr1_2:15219774-15219793 | Msa0058700:intron | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | + | chr1_2:15219778-15219797 | None:intergenic | 60.0% | |
| ACGTGAGCTCCAGTCGCAAG+GGG | + | chr1_2:15219801-15219820 | None:intergenic | 60.0% | |
| GACGTGAGCTCCAGTCGCAA+GGG | + | chr1_2:15219802-15219821 | None:intergenic | 60.0% | |
| AGACGTGAGCTCCAGTCGCA+AGG | + | chr1_2:15219803-15219822 | None:intergenic | 60.0% | |
| GACGGTAGGTAAGATGGGGG+TGG | + | chr1_2:15219879-15219898 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | - | chr1_2:15219938-15219957 | Msa0058700:intron | 60.0% |
| ! | TTAGGCCCGGTTCGCCATTG+TGG | + | chr1_2:15220007-15220026 | None:intergenic | 60.0% |
| CAATGGCGAACCGGGCCTAA+TGG | - | chr1_2:15220007-15220026 | Msa0058700:CDS | 60.0% | |
| !! | GGCCGAGTCAAGGTTGGTGT+CGG | + | chr1_2:15218965-15218984 | None:intergenic | 60.0% |
| GACTGTGGCCGAGTCAAGGT+TGG | + | chr1_2:15218971-15218990 | None:intergenic | 60.0% | |
| ! | GGTAACGGTGGAGGAAGAGG+CGG | + | chr1_2:15219001-15219020 | None:intergenic | 60.0% |
| ! | CACGGTAACGGTGGAGGAAG+AGG | + | chr1_2:15219004-15219023 | None:intergenic | 60.0% |
| CTCTTCCTCCACCGTTACCG+TGG | - | chr1_2:15219002-15219021 | Msa0058700:CDS | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | - | chr1_2:15219113-15219132 | Msa0058700:CDS | 60.0% | |
| GGAGGATGCTTTACGGGACC+TGG | - | chr1_2:15219583-15219602 | Msa0058700:intron | 60.0% | |
| CTCTTGCTACGGGCCTTAGC+TGG | + | chr1_2:15219767-15219786 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | - | chr1_2:15219765-15219784 | Msa0058700:intron | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | + | chr1_2:15219777-15219796 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | - | chr1_2:15219774-15219793 | Msa0058700:intron | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | + | chr1_2:15219778-15219797 | None:intergenic | 60.0% | |
| ACGTGAGCTCCAGTCGCAAG+GGG | + | chr1_2:15219801-15219820 | None:intergenic | 60.0% | |
| GACGTGAGCTCCAGTCGCAA+GGG | + | chr1_2:15219802-15219821 | None:intergenic | 60.0% | |
| AGACGTGAGCTCCAGTCGCA+AGG | + | chr1_2:15219803-15219822 | None:intergenic | 60.0% | |
| GACGGTAGGTAAGATGGGGG+TGG | + | chr1_2:15219879-15219898 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | - | chr1_2:15219938-15219957 | Msa0058700:intron | 60.0% |
| ! | TTAGGCCCGGTTCGCCATTG+TGG | + | chr1_2:15220007-15220026 | None:intergenic | 60.0% |
| CAATGGCGAACCGGGCCTAA+TGG | - | chr1_2:15220007-15220026 | Msa0058700:CDS | 60.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | + | chr1_2:15219694-15219713 | None:intergenic | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | - | chr1_2:15219773-15219792 | Msa0058700:intron | 65.0% | |
| CGTGAGCTCCAGTCGCAAGG+GGG | + | chr1_2:15219800-15219819 | None:intergenic | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+CGG | - | chr1_2:15219941-15219960 | Msa0058700:intron | 65.0% |
| GAGGGTCAGGCGGAGATGGT+CGG | - | chr1_2:15219951-15219970 | Msa0058700:intron | 65.0% | |
| GTTGGAGCTGCGGAGGCAGA+AGG | - | chr1_2:15220153-15220172 | Msa0058700:CDS | 65.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | + | chr1_2:15219694-15219713 | None:intergenic | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | - | chr1_2:15219773-15219792 | Msa0058700:intron | 65.0% | |
| CGTGAGCTCCAGTCGCAAGG+GGG | + | chr1_2:15219800-15219819 | None:intergenic | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+CGG | - | chr1_2:15219941-15219960 | Msa0058700:intron | 65.0% |
| GAGGGTCAGGCGGAGATGGT+CGG | - | chr1_2:15219951-15219970 | Msa0058700:intron | 65.0% | |
| GTTGGAGCTGCGGAGGCAGA+AGG | - | chr1_2:15220153-15220172 | Msa0058700:CDS | 65.0% | |
| GACGGAGGGTCAGGCGGAGA+TGG | - | chr1_2:15219947-15219966 | Msa0058700:intron | 70.0% | |
| GGTCAGGCGGAGATGGTCGG+AGG | - | chr1_2:15219954-15219973 | Msa0058700:intron | 70.0% | |
| GACGGAGGGTCAGGCGGAGA+TGG | - | chr1_2:15219947-15219966 | Msa0058700:intron | 70.0% | |
| GGTCAGGCGGAGATGGTCGG+AGG | - | chr1_2:15219954-15219973 | Msa0058700:intron | 70.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | - | chr1_2:15219789-15219808 | Msa0058700:intron | 75.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | - | chr1_2:15219789-15219808 | Msa0058700:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15218835 | 15220306 | 15218835 | ID=Msa0058700;Name=Msa0058700 |
| chr1_2 | mRNA | 15218835 | 15220306 | 15218835 | ID=Msa0058700-mRNA-1;Parent=Msa0058700;Name=Msa0058700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|340 |
| chr1_2 | exon | 15220007 | 15220306 | 15220007 | ID=Msa0058700-mRNA-1:exon:6183;Parent=Msa0058700-mRNA-1 |
| chr1_2 | exon | 15218835 | 15219557 | 15218835 | ID=Msa0058700-mRNA-1:exon:6182;Parent=Msa0058700-mRNA-1 |
| chr1_2 | CDS | 15220007 | 15220306 | 15220007 | ID=Msa0058700-mRNA-1:cds;Parent=Msa0058700-mRNA-1 |
| chr1_2 | CDS | 15218835 | 15219557 | 15218835 | ID=Msa0058700-mRNA-1:cds;Parent=Msa0058700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
