AlfalfaGEDB | Msa0058700

M. sativa cultivar zhongmu-4 / Msa0058700

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058700	XP_003588383.1	95.058	344	13	2	1	340	1	344	0.0	650

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058700	sp\|P69781\|GAT12_ARATH	56.981	265	97	7	93	340	67	331	6.48e-91	278

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058700	G7IB47	95.058	344	13	2	1	340	1	344	0.0	650

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0058700	TF	C2C2-GATA

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058700	MtrunA17_Chr1g0146231	95.058	344	13	2	1	340	1	344	0.0	650
Msa0058700	MtrunA17_Chr3g0140331	55.152	330	107	8	19	340	68	364	1.59e-103	308
Msa0058700	MtrunA17_Chr8g0340401	46.884	337	131	12	23	340	35	342	5.06e-78	242
Msa0058700	MtrunA17_Chr8g0372291	47.317	205	90	5	96	300	102	288	1.48e-46	159
Msa0058700	MtrunA17_Chr4g0035891	34.936	312	140	10	5	299	15	280	7.33e-44	152
Msa0058700	MtrunA17_Chr6g0461591	39.732	224	101	6	107	296	35	258	1.02e-40	143
Msa0058700	MtrunA17_Chr5g0404981	44.156	231	95	7	94	300	150	370	1.30e-39	144
Msa0058700	MtrunA17_Chr1g0199671	35.463	313	142	11	27	294	9	306	1.36e-37	137
Msa0058700	MtrunA17_Chr3g0145121	37.674	215	116	3	87	300	88	285	1.80e-37	136
Msa0058700	MtrunA17_Chr7g0253101	39.526	253	111	10	73	294	11	252	5.21e-35	128

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058700	AT5G25830.1	56.981	265	97	7	93	340	67	331	6.59e-92	278
Msa0058700	AT4G32890.1	43.881	335	131	9	21	340	16	308	4.66e-80	246
Msa0058700	AT3G60530.1	48.309	207	63	6	93	298	63	226	3.36e-49	165
Msa0058700	AT2G45050.1	45.175	228	89	7	89	310	60	257	5.02e-49	165
Msa0058700	AT4G36240.1	37.544	285	106	9	22	297	10	231	1.26e-39	140
Msa0058700	AT5G66320.2	38.519	270	116	8	69	312	86	331	3.48e-39	142
Msa0058700	AT5G66320.1	38.519	270	116	8	69	312	86	331	3.48e-39	142
Msa0058700	AT4G34680.1	39.171	217	81	5	90	299	77	249	3.57e-37	134
Msa0058700	AT4G34680.2	39.171	217	81	5	90	299	77	249	3.57e-37	134
Msa0058700	AT3G24050.1	74.286	70	18	0	229	298	193	262	2.78e-33	124

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 117 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTATGCAACGCTTG+TGG	0.638941	1_2:-15219085	Msa0058700:CDS
AAAACTTCCTTGTTGAATAT+AGG	0.362486	1_2:+15219382	None:intergenic
AAACAGTCCTATATTCAACA+AGG	0.707758	1_2:-15219389	Msa0058700:CDS
AAACGATTCCTCAACAACAT+TGG	0.525151	1_2:+15219504	None:intergenic
AAAGACTGCTCCAAGAAGAA+AGG	0.555772	1_2:-15219200	Msa0058700:CDS
AAATTCTGACAGCCAATATC+AGG	0.389939	1_2:+15220044	None:intergenic
AACACCGTCTTCTTCTGAGT+CGG	0.619749	1_2:-15219278	Msa0058700:CDS
AACAGTGACGGTAGGTAAGA+TGG	0.455172	1_2:+15219237	None:intergenic
AACGACATTAGGGTCGCACC+CGG	0.603894	1_2:+15220067	None:intergenic
AACGCTATTGACCACGGTAA+CGG	0.557909	1_2:+15220106	None:intergenic

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCTGAAATTATTGGCAAAAA+AGG	+	chr1_2:15219317-15219336	None:intergenic	30.0%
TAGGCTAAATACAACAGAAT+GGG	-	chr1_2:15219353-15219372	Msa0058700:CDS	30.0%
TGTTGAATATAGGACTGTTT+CGG	+	chr1_2:15219730-15219749	None:intergenic	30.0%
AAACAGTCCTATATTCAACA+AGG	-	chr1_2:15219730-15219749	Msa0058700:intron	30.0%
TACTCTGATGTTGTAAAATC+TGG	+	chr1_2:15220210-15220229	None:intergenic	30.0%
TTACTTGATTCACCAACATA+TGG	-	chr1_2:15220258-15220277	Msa0058700:CDS	30.0%
TACTTGATTCACCAACATAT+GGG	-	chr1_2:15220259-15220278	Msa0058700:CDS	30.0%
CCTGAAATTATTGGCAAAAA+AGG	+	chr1_2:15219317-15219336	None:intergenic	30.0%
TAGGCTAAATACAACAGAAT+GGG	-	chr1_2:15219353-15219372	Msa0058700:CDS	30.0%
TGTTGAATATAGGACTGTTT+CGG	+	chr1_2:15219730-15219749	None:intergenic	30.0%

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	15218835	15220306	15218835	ID=Msa0058700;Name=Msa0058700
chr1_2	mRNA	15218835	15220306	15218835	ID=Msa0058700-mRNA-1;Parent=Msa0058700;Name=Msa0058700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|340
chr1_2	exon	15220007	15220306	15220007	ID=Msa0058700-mRNA-1:exon:6183;Parent=Msa0058700-mRNA-1
chr1_2	exon	15218835	15219557	15218835	ID=Msa0058700-mRNA-1:exon:6182;Parent=Msa0058700-mRNA-1
chr1_2	CDS	15220007	15220306	15220007	ID=Msa0058700-mRNA-1:cds;Parent=Msa0058700-mRNA-1
chr1_2	CDS	15218835	15219557	15218835	ID=Msa0058700-mRNA-1:cds;Parent=Msa0058700-mRNA-1

Gene Sequence

>Msa0058700

ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCGGAACTCCTTATTCCCACCCCCATCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGCGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTGCGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG

Protein sequence

>Msa0058700

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPILPTVTVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM*