Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059650 | sp|Q700C7|SPCH_ARATH | 44.109 | 331 | 114 | 7 | 19 | 278 | 14 | 344 | 2.32e-70 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059650 | A0A072VF69 | 91.007 | 278 | 20 | 1 | 1 | 278 | 1 | 273 | 5.44e-173 | 488 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0059650 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059650 | MtrunA17_Chr1g0158941 | 91.007 | 278 | 20 | 1 | 1 | 278 | 1 | 273 | 1.05e-176 | 488 |
| Msa0059650 | MtrunA17_Chr3g0126381 | 59.890 | 182 | 47 | 6 | 121 | 278 | 1 | 180 | 9.68e-58 | 183 |
| Msa0059650 | MtrunA17_Chr2g0287761 | 49.198 | 187 | 74 | 2 | 92 | 278 | 1 | 166 | 6.45e-54 | 173 |
| Msa0059650 | MtrunA17_Chr0c01g0489461 | 38.655 | 238 | 123 | 4 | 43 | 279 | 156 | 371 | 9.84e-46 | 158 |
| Msa0059650 | MtrunA17_Chr3g0132471 | 36.123 | 227 | 127 | 3 | 54 | 278 | 79 | 289 | 1.40e-36 | 132 |
| Msa0059650 | MtrunA17_Chr7g0273081 | 38.318 | 214 | 108 | 4 | 66 | 278 | 93 | 283 | 3.18e-35 | 129 |
| Msa0059650 | MtrunA17_Chr1g0191571 | 38.974 | 195 | 90 | 4 | 91 | 278 | 135 | 307 | 1.23e-33 | 125 |
| Msa0059650 | MtrunA17_Chr8g0366551 | 35.897 | 195 | 91 | 5 | 91 | 278 | 123 | 290 | 1.76e-32 | 121 |
| Msa0059650 | MtrunA17_Chr3g0126361 | 53.846 | 130 | 37 | 7 | 15 | 123 | 5 | 132 | 4.98e-30 | 110 |
| Msa0059650 | MtrunA17_Chr5g0426851 | 32.482 | 274 | 136 | 8 | 27 | 278 | 23 | 269 | 5.35e-29 | 112 |
| Msa0059650 | MtrunA17_Chr8g0345871 | 30.435 | 253 | 133 | 4 | 40 | 278 | 115 | 338 | 9.38e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059650 | AT5G53210.2 | 44.411 | 331 | 113 | 7 | 19 | 278 | 14 | 344 | 7.73e-72 | 225 |
| Msa0059650 | AT5G53210.1 | 44.109 | 331 | 114 | 7 | 19 | 278 | 14 | 344 | 2.36e-71 | 224 |
| Msa0059650 | AT3G06120.1 | 45.213 | 188 | 87 | 3 | 92 | 278 | 1 | 173 | 4.58e-45 | 151 |
| Msa0059650 | AT3G24140.2 | 41.232 | 211 | 112 | 2 | 69 | 279 | 177 | 375 | 1.70e-44 | 155 |
| Msa0059650 | AT3G24140.1 | 41.232 | 211 | 112 | 2 | 69 | 279 | 177 | 375 | 1.89e-44 | 155 |
| Msa0059650 | AT1G72210.2 | 35.500 | 200 | 84 | 5 | 91 | 278 | 124 | 290 | 1.42e-29 | 114 |
| Msa0059650 | AT1G72210.1 | 35.500 | 200 | 84 | 5 | 91 | 278 | 124 | 290 | 1.49e-29 | 114 |
| Msa0059650 | AT1G22490.1 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 4.58e-26 | 104 |
| Msa0059650 | AT1G22490.2 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 1.62e-25 | 103 |
| Msa0059650 | AT4G01460.1 | 35.450 | 189 | 101 | 2 | 90 | 278 | 113 | 280 | 4.22e-24 | 99.4 |
| Msa0059650 | AT4G01460.2 | 35.450 | 189 | 101 | 2 | 90 | 278 | 113 | 280 | 4.22e-24 | 99.4 |
| Msa0059650 | AT2G46810.4 | 32.804 | 189 | 95 | 2 | 91 | 278 | 120 | 277 | 7.24e-21 | 90.9 |
| Msa0059650 | AT2G46810.2 | 32.275 | 189 | 96 | 2 | 91 | 278 | 120 | 277 | 1.34e-20 | 89.7 |
| Msa0059650 | AT5G65320.1 | 34.000 | 200 | 108 | 4 | 79 | 278 | 93 | 268 | 1.70e-20 | 89.4 |
| Msa0059650 | AT5G65320.2 | 34.000 | 200 | 108 | 4 | 79 | 278 | 93 | 268 | 2.02e-20 | 88.6 |
| Msa0059650 | AT2G46810.3 | 32.275 | 189 | 96 | 2 | 91 | 278 | 180 | 337 | 3.59e-20 | 89.4 |
| Msa0059650 | AT2G46810.1 | 32.275 | 189 | 96 | 2 | 91 | 278 | 192 | 349 | 4.09e-20 | 89.4 |
| Msa0059650 | AT3G61950.6 | 31.638 | 177 | 85 | 2 | 91 | 265 | 126 | 268 | 6.44e-19 | 85.1 |
| Msa0059650 | AT3G61950.2 | 31.638 | 177 | 85 | 2 | 91 | 265 | 126 | 268 | 8.49e-19 | 84.7 |
| Msa0059650 | AT3G61950.3 | 31.638 | 177 | 85 | 2 | 91 | 265 | 177 | 319 | 1.09e-18 | 85.1 |
| Msa0059650 | AT5G46690.2 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 1.29e-18 | 84.0 |
| Msa0059650 | AT3G61950.1 | 31.638 | 177 | 85 | 2 | 91 | 265 | 177 | 319 | 1.36e-18 | 84.7 |
| Msa0059650 | AT5G46690.1 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 2.67e-18 | 83.6 |
Find 34 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTTCTTGGATTCT+AGG | 0.149526 | 1_2:+16895511 | None:intergenic |
| GCTATACTTGTTCACTATTA+AGG | 0.194492 | 1_2:-16895139 | Msa0059650:CDS |
| TATGGAGTTCTTGGACTAAT+TGG | 0.233920 | 1_2:+16895429 | None:intergenic |
| AACCGTTTCGTCACGAATTC+CGG | 0.237314 | 1_2:-16895247 | Msa0059650:CDS |
| CTCATTGATGTTATCATTGA+TGG | 0.240583 | 1_2:+16895341 | None:intergenic |
| AGCCATTGATATGGAGTTCT+TGG | 0.282669 | 1_2:+16895420 | None:intergenic |
| CTAATTGGTAAGATTATTCT+AGG | 0.295024 | 1_2:+16895444 | None:intergenic |
| CATTGTTGTAGCCATTGATA+TGG | 0.334687 | 1_2:+16895411 | None:intergenic |
| ATATTCAATGAAACTGAGTT+TGG | 0.348570 | 1_2:-16896186 | Msa0059650:CDS |
| AACAAGGTGTCATGATCTAT+TGG | 0.372909 | 1_2:+16896219 | None:intergenic |
| ACCGTTTCGTCACGAATTCC+GGG | 0.393233 | 1_2:-16895246 | Msa0059650:CDS |
| TGTGACTTCTTCAATTATAG+AGG | 0.399402 | 1_2:-16896013 | Msa0059650:CDS |
| ATGGAAGAAGCTGAAGAAGT+TGG | 0.426375 | 1_2:+16895360 | None:intergenic |
| GGACTTAGTGGTAAAGGTCT+TGG | 0.429539 | 1_2:+16895465 | None:intergenic |
| TTCGTCACGAATTCCGGGGC+AGG | 0.440139 | 1_2:-16895241 | Msa0059650:CDS |
| AAGATTATTCTAGGACTTAG+TGG | 0.440624 | 1_2:+16895453 | None:intergenic |
| ATTCTAGGACTTAGTGGTAA+AGG | 0.492814 | 1_2:+16895459 | None:intergenic |
| CCCCGGAATTCGTGACGAAA+CGG | 0.495669 | 1_2:+16895245 | None:intergenic |
| TGTCGCGAATTCAACATCTT+CGG | 0.496233 | 1_2:-16895316 | Msa0059650:CDS |
| GTACAAAATGGAAACTCAAA+AGG | 0.509601 | 1_2:-16896244 | None:intergenic |
| GTCCAAGAACTCCATATCAA+TGG | 0.523072 | 1_2:-16895422 | Msa0059650:CDS |
| ATCTTCGGTTGCTGATGTTG+AGG | 0.535328 | 1_2:-16895301 | Msa0059650:CDS |
| TGAAACTGAGTTTGGTTCAG+AGG | 0.550414 | 1_2:-16896178 | Msa0059650:CDS |
| TTGGAGATGGCTCAGATGAA+AGG | 0.570619 | 1_2:+16895379 | None:intergenic |
| ACATCGTATGTCGCATATCA+CGG | 0.587471 | 1_2:-16895971 | Msa0059650:CDS |
| GATCAAGCATCAATAGTTGA+AGG | 0.590664 | 1_2:-16895576 | Msa0059650:CDS |
| AATAGTGAACAAGTATAGCA+TGG | 0.592880 | 1_2:+16895143 | None:intergenic |
| GAAGCTGAAGAAGTTGGAGA+TGG | 0.605113 | 1_2:+16895366 | None:intergenic |
| ATTATTCTAAGAGCCTGCCC+CGG | 0.625886 | 1_2:+16895228 | None:intergenic |
| CCGTTTCGTCACGAATTCCG+GGG | 0.670932 | 1_2:-16895245 | Msa0059650:CDS |
| ATAGAGGAACAAAACAACGA+TGG | 0.690625 | 1_2:-16895997 | Msa0059650:CDS |
| CAATGGCTACAACAATGTGG+TGG | 0.701552 | 1_2:-16895405 | Msa0059650:CDS |
| TATCAATGGCTACAACAATG+TGG | 0.711948 | 1_2:-16895408 | Msa0059650:CDS |
| GAATATATCAGATAACAACA+AGG | 0.741545 | 1_2:+16896203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_2:16895225-16895244 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_2:16895556-16895575 | Msa0059650:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_2:16895557-16895576 | Msa0059650:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_2:16895558-16895577 | Msa0059650:CDS | 20.0% |
| !!! | GTAAATTTTTCTTTGTTTCT+TGG | + | chr1_2:16895868-16895887 | None:intergenic | 20.0% |
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_2:16895225-16895244 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_2:16895556-16895575 | Msa0059650:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_2:16895557-16895576 | Msa0059650:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_2:16895558-16895577 | Msa0059650:CDS | 20.0% |
| !!! | GTAAATTTTTCTTTGTTTCT+TGG | + | chr1_2:16895868-16895887 | None:intergenic | 20.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_2:16895168-16895187 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_2:16895182-16895201 | Msa0059650:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_2:16895268-16895287 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_2:16895761-16895780 | Msa0059650:intron | 25.0% |
| ! | ATTACTCTTCTATATGGTTT+AGG | - | chr1_2:16895767-16895786 | Msa0059650:intron | 25.0% |
| ! | TTACTCTTCTATATGGTTTA+GGG | - | chr1_2:16895768-16895787 | Msa0059650:intron | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_2:16895927-16895946 | None:intergenic | 25.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_2:16895168-16895187 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_2:16895182-16895201 | Msa0059650:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_2:16895268-16895287 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_2:16895761-16895780 | Msa0059650:intron | 25.0% |
| ! | ATTACTCTTCTATATGGTTT+AGG | - | chr1_2:16895767-16895786 | Msa0059650:intron | 25.0% |
| ! | TTACTCTTCTATATGGTTTA+GGG | - | chr1_2:16895768-16895787 | Msa0059650:intron | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_2:16895927-16895946 | None:intergenic | 25.0% |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_2:16895208-16895227 | Msa0059650:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_2:16895254-16895273 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_2:16895255-16895274 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_2:16895355-16895374 | Msa0059650:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_2:16895482-16895501 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_2:16895592-16895611 | Msa0059650:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_2:16895860-16895879 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_2:16895918-16895937 | None:intergenic | 30.0% |
| CTCATTGATGTTATCATTGA+TGG | + | chr1_2:16896030-16896049 | None:intergenic | 30.0% | |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_2:16896228-16896247 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_2:16896229-16896248 | Msa0059650:CDS | 30.0% | |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_2:16895208-16895227 | Msa0059650:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_2:16895254-16895273 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_2:16895255-16895274 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_2:16895355-16895374 | Msa0059650:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_2:16895482-16895501 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_2:16895592-16895611 | Msa0059650:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_2:16895860-16895879 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_2:16895918-16895937 | None:intergenic | 30.0% |
| CTCATTGATGTTATCATTGA+TGG | + | chr1_2:16896030-16896049 | None:intergenic | 30.0% | |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_2:16896228-16896247 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_2:16896229-16896248 | Msa0059650:CDS | 30.0% | |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_2:16895152-16895171 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_2:16895299-16895318 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_2:16895371-16895390 | Msa0059650:CDS | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_2:16895792-16895811 | Msa0059650:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_2:16895912-16895931 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_2:16895942-16895961 | None:intergenic | 35.0% | |
| CATTGTTGTAGCCATTGATA+TGG | + | chr1_2:16895960-16895979 | None:intergenic | 35.0% | |
| TATCAATGGCTACAACAATG+TGG | - | chr1_2:16895960-16895979 | Msa0059650:CDS | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_2:16896080-16896099 | Msa0059650:CDS | 35.0% |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_2:16895152-16895171 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_2:16895299-16895318 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_2:16895371-16895390 | Msa0059650:CDS | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_2:16895792-16895811 | Msa0059650:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_2:16895912-16895931 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_2:16895942-16895961 | None:intergenic | 35.0% | |
| CATTGTTGTAGCCATTGATA+TGG | + | chr1_2:16895960-16895979 | None:intergenic | 35.0% | |
| TATCAATGGCTACAACAATG+TGG | - | chr1_2:16895960-16895979 | Msa0059650:CDS | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_2:16896080-16896099 | Msa0059650:CDS | 35.0% |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_2:16895190-16895209 | Msa0059650:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_2:16895397-16895416 | Msa0059650:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_2:16895597-16895616 | Msa0059650:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_2:16895601-16895620 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_2:16895606-16895625 | None:intergenic | 40.0% | |
| TAGACTACGGTTCGTAGTTA+GGG | + | chr1_2:16895641-16895660 | None:intergenic | 40.0% | |
| TAACTACGAACCGTAGTCTA+CGG | - | chr1_2:16895641-16895660 | Msa0059650:intron | 40.0% | |
| ATTGCATCAACCGTAGACTA+CGG | + | chr1_2:16895654-16895673 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_2:16895946-16895965 | Msa0059650:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_2:16895951-16895970 | None:intergenic | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_2:16896011-16896030 | None:intergenic | 40.0% | |
| TGTCGCGAATTCAACATCTT+CGG | - | chr1_2:16896052-16896071 | Msa0059650:CDS | 40.0% | |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_2:16895190-16895209 | Msa0059650:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_2:16895397-16895416 | Msa0059650:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_2:16895597-16895616 | Msa0059650:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_2:16895601-16895620 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_2:16895606-16895625 | None:intergenic | 40.0% | |
| TAGACTACGGTTCGTAGTTA+GGG | + | chr1_2:16895641-16895660 | None:intergenic | 40.0% | |
| TAACTACGAACCGTAGTCTA+CGG | - | chr1_2:16895641-16895660 | Msa0059650:intron | 40.0% | |
| ATTGCATCAACCGTAGACTA+CGG | + | chr1_2:16895654-16895673 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_2:16895946-16895965 | Msa0059650:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_2:16895951-16895970 | None:intergenic | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_2:16896011-16896030 | None:intergenic | 40.0% | |
| TGTCGCGAATTCAACATCTT+CGG | - | chr1_2:16896052-16896071 | Msa0059650:CDS | 40.0% | |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_2:16895624-16895643 | None:intergenic | 45.0% |
| AGACTACGGTTCGTAGTTAG+GGG | + | chr1_2:16895640-16895659 | None:intergenic | 45.0% | |
| GTAGACTACGGTTCGTAGTT+AGG | + | chr1_2:16895642-16895661 | None:intergenic | 45.0% | |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_2:16895906-16895925 | None:intergenic | 45.0% | |
| CAATGGCTACAACAATGTGG+TGG | - | chr1_2:16895963-16895982 | Msa0059650:CDS | 45.0% | |
| TTGGAGATGGCTCAGATGAA+AGG | + | chr1_2:16895992-16896011 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_2:16896005-16896024 | None:intergenic | 45.0% | |
| ATCTTCGGTTGCTGATGTTG+AGG | - | chr1_2:16896067-16896086 | Msa0059650:CDS | 45.0% | |
| AACCGTTTCGTCACGAATTC+CGG | - | chr1_2:16896121-16896140 | Msa0059650:CDS | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_2:16896143-16896162 | None:intergenic | 45.0% |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_2:16895624-16895643 | None:intergenic | 45.0% |
| AGACTACGGTTCGTAGTTAG+GGG | + | chr1_2:16895640-16895659 | None:intergenic | 45.0% | |
| GTAGACTACGGTTCGTAGTT+AGG | + | chr1_2:16895642-16895661 | None:intergenic | 45.0% | |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_2:16895906-16895925 | None:intergenic | 45.0% | |
| CAATGGCTACAACAATGTGG+TGG | - | chr1_2:16895963-16895982 | Msa0059650:CDS | 45.0% | |
| TTGGAGATGGCTCAGATGAA+AGG | + | chr1_2:16895992-16896011 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_2:16896005-16896024 | None:intergenic | 45.0% | |
| ATCTTCGGTTGCTGATGTTG+AGG | - | chr1_2:16896067-16896086 | Msa0059650:CDS | 45.0% | |
| AACCGTTTCGTCACGAATTC+CGG | - | chr1_2:16896121-16896140 | Msa0059650:CDS | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_2:16896143-16896162 | None:intergenic | 45.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_2:16895698-16895717 | None:intergenic | 5.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_2:16895698-16895717 | None:intergenic | 5.0% |
| ACCGTTTCGTCACGAATTCC+GGG | - | chr1_2:16896122-16896141 | Msa0059650:CDS | 50.0% | |
| ACCGTTTCGTCACGAATTCC+GGG | - | chr1_2:16896122-16896141 | Msa0059650:CDS | 50.0% | |
| CCCCGGAATTCGTGACGAAA+CGG | + | chr1_2:16896126-16896145 | None:intergenic | 55.0% | |
| CCGTTTCGTCACGAATTCCG+GGG | - | chr1_2:16896123-16896142 | Msa0059650:CDS | 55.0% | |
| CCCCGGAATTCGTGACGAAA+CGG | + | chr1_2:16896126-16896145 | None:intergenic | 55.0% | |
| CCGTTTCGTCACGAATTCCG+GGG | - | chr1_2:16896123-16896142 | Msa0059650:CDS | 55.0% | |
| TTCGTCACGAATTCCGGGGC+AGG | - | chr1_2:16896127-16896146 | Msa0059650:CDS | 60.0% | |
| TTCGTCACGAATTCCGGGGC+AGG | - | chr1_2:16896127-16896146 | Msa0059650:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16895131 | 16896259 | 16895131 | ID=Msa0059650;Name=Msa0059650 |
| chr1_2 | mRNA | 16895131 | 16896259 | 16895131 | ID=Msa0059650-mRNA-1;Parent=Msa0059650;Name=Msa0059650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|279 |
| chr1_2 | exon | 16895891 | 16896259 | 16895891 | ID=Msa0059650-mRNA-1:exon:6668;Parent=Msa0059650-mRNA-1 |
| chr1_2 | exon | 16895131 | 16895601 | 16895131 | ID=Msa0059650-mRNA-1:exon:6667;Parent=Msa0059650-mRNA-1 |
| chr1_2 | CDS | 16895891 | 16896259 | 16895891 | ID=Msa0059650-mRNA-1:cds;Parent=Msa0059650-mRNA-1 |
| chr1_2 | CDS | 16895131 | 16895601 | 16895131 | ID=Msa0059650-mRNA-1:cds;Parent=Msa0059650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
