Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059660 | XP_004498435.1 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 3.30e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059660 | sp|Q9SFD8|NFYB9_ARATH | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 7.78e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059660 | A0A1S2Y2P9 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 1.58e-53 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0059660 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059660 | MtrunA17_Chr1g0158951 | 83.696 | 92 | 15 | 0 | 86 | 177 | 19 | 110 | 1.21e-53 | 166 |
| Msa0059660 | MtrunA17_Chr1g0165041 | 63.333 | 90 | 33 | 0 | 55 | 144 | 5 | 94 | 1.40e-39 | 133 |
| Msa0059660 | MtrunA17_Chr4g0076381 | 46.715 | 137 | 68 | 3 | 10 | 144 | 13 | 146 | 1.19e-35 | 124 |
| Msa0059660 | MtrunA17_Chr7g0263601 | 41.667 | 132 | 64 | 2 | 49 | 178 | 17 | 137 | 1.37e-34 | 119 |
| Msa0059660 | MtrunA17_Chr1g0159271 | 58.065 | 93 | 39 | 0 | 70 | 162 | 1 | 93 | 4.13e-34 | 116 |
| Msa0059660 | MtrunA17_Chr3g0102351 | 44.286 | 140 | 69 | 4 | 34 | 169 | 2 | 136 | 8.01e-34 | 118 |
| Msa0059660 | MtrunA17_Chr8g0382931 | 53.846 | 91 | 42 | 0 | 54 | 144 | 26 | 116 | 1.36e-33 | 118 |
| Msa0059660 | MtrunA17_Chr2g0290491 | 44.444 | 117 | 58 | 1 | 37 | 153 | 5 | 114 | 1.38e-33 | 117 |
| Msa0059660 | MtrunA17_Chr1g0185911 | 52.747 | 91 | 43 | 0 | 54 | 144 | 27 | 117 | 3.59e-33 | 116 |
| Msa0059660 | MtrunA17_Chr5g0446491 | 46.789 | 109 | 54 | 1 | 55 | 163 | 22 | 126 | 8.26e-33 | 115 |
| Msa0059660 | MtrunA17_Chr4g0076321 | 42.308 | 130 | 70 | 1 | 37 | 166 | 5 | 129 | 3.35e-32 | 112 |
| Msa0059660 | MtrunA17_Chr8g0384451 | 45.000 | 100 | 55 | 0 | 55 | 154 | 39 | 138 | 9.06e-30 | 108 |
| Msa0059660 | MtrunA17_Chr2g0296321 | 48.889 | 90 | 46 | 0 | 55 | 144 | 65 | 154 | 7.56e-28 | 104 |
| Msa0059660 | MtrunA17_Chr4g0067091 | 46.465 | 99 | 53 | 0 | 55 | 153 | 21 | 119 | 7.92e-28 | 103 |
| Msa0059660 | MtrunA17_Chr1g0195851 | 46.316 | 95 | 51 | 0 | 55 | 149 | 35 | 129 | 1.69e-27 | 102 |
| Msa0059660 | MtrunA17_Chr1g0159291 | 48.750 | 80 | 41 | 0 | 57 | 136 | 3 | 82 | 3.53e-24 | 90.5 |
| Msa0059660 | MtrunA17_Chr1g0191981 | 40.230 | 87 | 52 | 0 | 58 | 144 | 6 | 92 | 3.31e-21 | 84.0 |
| Msa0059660 | MtrunA17_Chr5g0446601 | 41.176 | 85 | 50 | 0 | 61 | 145 | 29 | 113 | 4.78e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059660 | AT5G47670.2 | 54.945 | 91 | 41 | 0 | 54 | 144 | 27 | 117 | 5.75e-35 | 122 |
| Msa0059660 | AT1G21970.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 7.91e-35 | 122 |
| Msa0059660 | AT5G47670.1 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.57e-35 | 122 |
| Msa0059660 | AT5G47670.3 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.57e-35 | 122 |
| Msa0059660 | AT4G14540.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 19 | 109 | 1.56e-34 | 119 |
| Msa0059660 | AT2G38880.3 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 1.61e-33 | 116 |
| Msa0059660 | AT2G38880.2 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0059660 | AT2G38880.1 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0059660 | AT2G38880.5 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0059660 | AT2G38880.7 | 45.000 | 120 | 53 | 1 | 55 | 174 | 20 | 126 | 3.01e-33 | 115 |
| Msa0059660 | AT2G38880.4 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 1.36e-32 | 113 |
| Msa0059660 | AT5G47640.1 | 51.648 | 91 | 44 | 0 | 55 | 145 | 26 | 116 | 2.35e-32 | 115 |
| Msa0059660 | AT2G38880.11 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 3.23e-32 | 114 |
| Msa0059660 | AT2G38880.8 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 3.23e-32 | 114 |
| Msa0059660 | AT2G37060.2 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0059660 | AT2G37060.3 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0059660 | AT2G37060.1 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0059660 | AT3G53340.5 | 51.111 | 90 | 44 | 0 | 55 | 144 | 28 | 117 | 5.95e-32 | 113 |
| Msa0059660 | AT3G53340.1 | 51.111 | 90 | 44 | 0 | 55 | 144 | 28 | 117 | 5.95e-32 | 113 |
| Msa0059660 | AT3G53340.4 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.13e-31 | 111 |
| Msa0059660 | AT2G38880.9 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0059660 | AT2G38880.10 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0059660 | AT2G38880.6 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0059660 | AT3G53340.3 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.76e-30 | 108 |
| Msa0059660 | AT3G53340.2 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.76e-30 | 108 |
| Msa0059660 | AT2G13570.1 | 49.451 | 91 | 46 | 0 | 55 | 145 | 35 | 125 | 7.33e-30 | 109 |
| Msa0059660 | AT2G47810.1 | 47.253 | 91 | 48 | 0 | 54 | 144 | 49 | 139 | 3.05e-27 | 100 |
| Msa0059660 | AT1G09030.1 | 41.573 | 89 | 52 | 0 | 56 | 144 | 3 | 91 | 2.59e-23 | 90.1 |
Find 35 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGCGAACGATTTAATA+TGG | 0.243997 | 1_2:-16905199 | Msa0059660:CDS |
| ATGAATTACCTACTTCAAAA+TGG | 0.257898 | 1_2:+16905486 | None:intergenic |
| TTGTCGAATCCAATTGTAAT+TGG | 0.273848 | 1_2:+16905083 | None:intergenic |
| TTAAAGTCTTAAAAGTAGTA+TGG | 0.360701 | 1_2:-16906168 | Msa0059660:exon |
| AGGTAAATGCTGCTTAGTTC+CGG | 0.363825 | 1_2:+16905409 | None:intergenic |
| AATGACATGCCAATTACAAT+TGG | 0.392076 | 1_2:-16905092 | Msa0059660:CDS |
| GTGTTGAACGACTAAGGTTA+AGG | 0.408775 | 1_2:+16906129 | None:intergenic |
| CCACATAGTTACGATACCTT+TGG | 0.434158 | 1_2:+16905123 | None:intergenic |
| TTGATTGTGTTGAACGACTA+AGG | 0.437171 | 1_2:+16906123 | None:intergenic |
| ATATGGGCAATGGATAGGTT+AGG | 0.445811 | 1_2:-16905182 | Msa0059660:CDS |
| TGTTGAACGACTAAGGTTAA+GGG | 0.465410 | 1_2:+16906130 | None:intergenic |
| CATAGTTACGATACCTTTGG+AGG | 0.481766 | 1_2:+16905126 | None:intergenic |
| CTTAAAAGTAGTATGGAGAA+TGG | 0.482031 | 1_2:-16906161 | Msa0059660:exon |
| TACAGCGAACGATTTAATAT+GGG | 0.483846 | 1_2:-16905198 | Msa0059660:CDS |
| ATTCTTGTCAATTGCACGAT+GGG | 0.485603 | 1_2:+16905359 | None:intergenic |
| ATTTAATATGGGCAATGGAT+AGG | 0.498662 | 1_2:-16905187 | Msa0059660:CDS |
| CGTTCAACACAATCAAGCTC+TGG | 0.512773 | 1_2:-16906116 | Msa0059660:intron |
| TGGATTCGACAAGGATGGAT+CGG | 0.517609 | 1_2:-16905072 | Msa0059660:CDS |
| AACGACTAAGGTTAAGGGAC+GGG | 0.520234 | 1_2:+16906135 | None:intergenic |
| ACAATTGGATTCGACAAGGA+TGG | 0.533736 | 1_2:-16905077 | Msa0059660:CDS |
| GGATTCGACAAGGATGGATC+GGG | 0.534384 | 1_2:-16905071 | Msa0059660:CDS |
| GGTGCTAGTGGCTCGAACAA+TGG | 0.541308 | 1_2:-16905050 | Msa0059660:CDS |
| GAACGATTTAATATGGGCAA+TGG | 0.552208 | 1_2:-16905192 | Msa0059660:CDS |
| TTTACCTAAAACAAAGAATG+AGG | 0.564286 | 1_2:-16905393 | Msa0059660:CDS |
| AAGGATGGATCGGGTGCTAG+TGG | 0.571277 | 1_2:-16905062 | Msa0059660:CDS |
| AACAACAATAACTTTCACAC+CGG | 0.626294 | 1_2:-16905428 | Msa0059660:CDS |
| TTTGGAGGTAAAAGACTAGA+GGG | 0.630419 | 1_2:+16905141 | None:intergenic |
| CATGAGCATCATCACGAGTG+AGG | 0.643678 | 1_2:-16905258 | Msa0059660:CDS |
| CCAAAGGTATCGTAACTATG+TGG | 0.644573 | 1_2:-16905123 | Msa0059660:CDS |
| GAACGACTAAGGTTAAGGGA+CGG | 0.644933 | 1_2:+16906134 | None:intergenic |
| GATTCTTGTCAATTGCACGA+TGG | 0.645811 | 1_2:+16905358 | None:intergenic |
| CTTTGGAGGTAAAAGACTAG+AGG | 0.649236 | 1_2:+16905140 | None:intergenic |
| AATTACAATTGGATTCGACA+AGG | 0.668467 | 1_2:-16905081 | Msa0059660:CDS |
| TCACGAGTGAGGCAAGCGAG+CGG | 0.677839 | 1_2:-16905247 | Msa0059660:CDS |
| TGCAATTGACAAGAATCATG+CGG | 0.689401 | 1_2:-16905352 | Msa0059660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_2:16905185-16905204 | Msa0059660:CDS | 10.0% |
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_2:16905185-16905204 | Msa0059660:CDS | 10.0% |
| !!! | TGCTTATATTTTTTTTTTTG+AGG | - | chr1_2:16905393-16905412 | Msa0059660:CDS | 15.0% |
| !!! | GCTTATATTTTTTTTTTTGA+GGG | - | chr1_2:16905394-16905413 | Msa0059660:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_2:16905557-16905576 | Msa0059660:intron | 15.0% |
| !!! | TGCTTATATTTTTTTTTTTG+AGG | - | chr1_2:16905393-16905412 | Msa0059660:CDS | 15.0% |
| !!! | GCTTATATTTTTTTTTTTGA+GGG | - | chr1_2:16905394-16905413 | Msa0059660:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_2:16905557-16905576 | Msa0059660:intron | 15.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_2:16905028-16905047 | Msa0059660:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_2:16905166-16905185 | None:intergenic | 20.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_2:16905028-16905047 | Msa0059660:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_2:16905166-16905185 | None:intergenic | 20.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_2:16905112-16905131 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_2:16905133-16905152 | Msa0059660:CDS | 25.0% |
| !!! | TTTTACTTTGAAGAAGATTG+AGG | - | chr1_2:16905242-16905261 | Msa0059660:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_2:16905325-16905344 | Msa0059660:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_2:16905713-16905732 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_2:16905803-16905822 | Msa0059660:intron | 25.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_2:16905112-16905131 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_2:16905133-16905152 | Msa0059660:CDS | 25.0% |
| !!! | TTTTACTTTGAAGAAGATTG+AGG | - | chr1_2:16905242-16905261 | Msa0059660:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_2:16905325-16905344 | Msa0059660:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_2:16905713-16905732 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_2:16905803-16905822 | Msa0059660:intron | 25.0% |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_2:16905035-16905054 | Msa0059660:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_2:16905113-16905132 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_2:16905122-16905141 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_2:16905132-16905151 | Msa0059660:CDS | 30.0% | |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_2:16905282-16905301 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_2:16905318-16905337 | Msa0059660:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_2:16905364-16905383 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_2:16905377-16905396 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_2:16905517-16905536 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAACATCTTGTAC+AGG | - | chr1_2:16905594-16905613 | Msa0059660:intron | 30.0% |
| CTTGTTAAACATCTTGTACA+GGG | - | chr1_2:16905595-16905614 | Msa0059660:intron | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_2:16905768-16905787 | Msa0059660:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_2:16905997-16906016 | Msa0059660:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_2:16905998-16906017 | Msa0059660:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_2:16906009-16906028 | Msa0059660:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_2:16906032-16906051 | Msa0059660:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_2:16906104-16906123 | Msa0059660:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_2:16906116-16906135 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_2:16906115-16906134 | Msa0059660:intron | 30.0% | |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_2:16905035-16905054 | Msa0059660:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_2:16905113-16905132 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_2:16905122-16905141 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_2:16905132-16905151 | Msa0059660:CDS | 30.0% | |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_2:16905282-16905301 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_2:16905318-16905337 | Msa0059660:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_2:16905364-16905383 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_2:16905377-16905396 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_2:16905517-16905536 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAACATCTTGTAC+AGG | - | chr1_2:16905594-16905613 | Msa0059660:intron | 30.0% |
| CTTGTTAAACATCTTGTACA+GGG | - | chr1_2:16905595-16905614 | Msa0059660:intron | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_2:16905768-16905787 | Msa0059660:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_2:16905997-16906016 | Msa0059660:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_2:16905998-16906017 | Msa0059660:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_2:16906009-16906028 | Msa0059660:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_2:16906032-16906051 | Msa0059660:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_2:16906104-16906123 | Msa0059660:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_2:16906116-16906135 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_2:16906115-16906134 | Msa0059660:intron | 30.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_2:16905069-16905088 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_2:16905076-16905095 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_2:16905504-16905523 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_2:16905505-16905524 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_2:16905509-16905528 | Msa0059660:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_2:16905518-16905537 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_2:16905527-16905546 | Msa0059660:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_2:16905544-16905563 | None:intergenic | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_2:16905681-16905700 | Msa0059660:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_2:16905702-16905721 | Msa0059660:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_2:16905810-16905829 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_2:16905840-16905859 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_2:16905844-16905863 | Msa0059660:intron | 35.0% | |
| ! | TCAGAGATTTTTACATGCGA+GGG | + | chr1_2:16905879-16905898 | None:intergenic | 35.0% |
| ! | ATCAGAGATTTTTACATGCG+AGG | + | chr1_2:16905880-16905899 | None:intergenic | 35.0% |
| TCGCATGTAAAAATCTCTGA+TGG | - | chr1_2:16905879-16905898 | Msa0059660:intron | 35.0% | |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_2:16906004-16906023 | Msa0059660:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_2:16906058-16906077 | None:intergenic | 35.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_2:16905069-16905088 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_2:16905076-16905095 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_2:16905504-16905523 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_2:16905505-16905524 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_2:16905509-16905528 | Msa0059660:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_2:16905518-16905537 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_2:16905527-16905546 | Msa0059660:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_2:16905544-16905563 | None:intergenic | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_2:16905681-16905700 | Msa0059660:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_2:16905702-16905721 | Msa0059660:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_2:16905810-16905829 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_2:16905840-16905859 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_2:16905844-16905863 | Msa0059660:intron | 35.0% | |
| ! | TCAGAGATTTTTACATGCGA+GGG | + | chr1_2:16905879-16905898 | None:intergenic | 35.0% |
| ! | ATCAGAGATTTTTACATGCG+AGG | + | chr1_2:16905880-16905899 | None:intergenic | 35.0% |
| TCGCATGTAAAAATCTCTGA+TGG | - | chr1_2:16905879-16905898 | Msa0059660:intron | 35.0% | |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_2:16906004-16906023 | Msa0059660:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_2:16906058-16906077 | None:intergenic | 35.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_2:16905070-16905089 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_2:16905499-16905518 | Msa0059660:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_2:16905790-16905809 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_2:16905841-16905860 | None:intergenic | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_2:16906014-16906033 | Msa0059660:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_2:16906059-16906078 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_2:16906057-16906076 | Msa0059660:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_2:16906073-16906092 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_2:16906076-16906095 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_2:16906073-16906092 | Msa0059660:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_2:16906119-16906138 | Msa0059660:CDS | 40.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_2:16905070-16905089 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_2:16905499-16905518 | Msa0059660:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_2:16905790-16905809 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_2:16905841-16905860 | None:intergenic | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_2:16906014-16906033 | Msa0059660:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_2:16906059-16906078 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_2:16906057-16906076 | Msa0059660:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_2:16906073-16906092 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_2:16906076-16906095 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_2:16906073-16906092 | Msa0059660:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_2:16906119-16906138 | Msa0059660:CDS | 40.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_2:16905064-16905083 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_2:16905065-16905084 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_2:16905080-16905099 | Msa0059660:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_2:16906124-16906143 | Msa0059660:CDS | 45.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_2:16905064-16905083 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_2:16905065-16905084 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_2:16905080-16905099 | Msa0059660:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_2:16906124-16906143 | Msa0059660:CDS | 45.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_2:16905938-16905957 | Msa0059660:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_2:16906125-16906144 | Msa0059660:CDS | 50.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_2:16905938-16905957 | Msa0059660:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_2:16906125-16906144 | Msa0059660:CDS | 50.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_2:16906134-16906153 | Msa0059660:CDS | 55.0% | |
| GGTGCTAGTGGCTCGAACAA+TGG | - | chr1_2:16906146-16906165 | Msa0059660:CDS | 55.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_2:16906134-16906153 | Msa0059660:CDS | 55.0% | |
| GGTGCTAGTGGCTCGAACAA+TGG | - | chr1_2:16906146-16906165 | Msa0059660:CDS | 55.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_2:16905949-16905968 | Msa0059660:intron | 60.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_2:16905949-16905968 | Msa0059660:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16905028 | 16906190 | 16905028 | ID=Msa0059660;Name=Msa0059660 |
| chr1_2 | mRNA | 16905028 | 16906190 | 16905028 | ID=Msa0059660-mRNA-1;Parent=Msa0059660;Name=Msa0059660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=19|1|0.5|1|1|1|2|0|178 |
| chr1_2 | exon | 16905028 | 16905509 | 16905028 | ID=Msa0059660-mRNA-1:exon:6666;Parent=Msa0059660-mRNA-1 |
| chr1_2 | exon | 16906117 | 16906190 | 16906117 | ID=Msa0059660-mRNA-1:exon:6665;Parent=Msa0059660-mRNA-1 |
| chr1_2 | five_prime_UTR | 16906172 | 16906190 | 16906172 | ID=Msa0059660-mRNA-1:five_prime_utr;Parent=Msa0059660-mRNA-1 |
| chr1_2 | CDS | 16906117 | 16906171 | 16906117 | ID=Msa0059660-mRNA-1:cds;Parent=Msa0059660-mRNA-1 |
| chr1_2 | CDS | 16905028 | 16905509 | 16905028 | ID=Msa0059660-mRNA-1:cds;Parent=Msa0059660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
