AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060150 MtrunA17_Chr1g0159661 92.262 168 13 0 1 168 1 168 5.05e-112 318
Msa0060150 MtrunA17_Chr3g0125241 77.586 174 37 1 1 174 26 197 2.17e-96 279
Msa0060150 MtrunA17_Chr3g0142191 45.070 142 78 0 1 142 1 142 5.38e-40 136
Msa0060150 MtrunA17_Chr1g0164791 38.506 174 93 3 1 161 1 173 4.46e-36 126
Msa0060150 MtrunA17_Chr5g0404951 43.836 146 78 2 1 142 1 146 1.21e-35 125
Msa0060150 MtrunA17_Chr8g0351051 42.857 147 77 2 1 142 1 145 1.24e-32 118
Msa0060150 MtrunA17_Chr8g0366231 41.566 166 87 5 1 157 1 165 4.74e-32 116
Msa0060150 MtrunA17_Chr4g0061691 41.040 173 78 6 1 157 1 165 8.90e-32 115
Msa0060150 MtrunA17_Chr7g0220121 39.521 167 93 3 1 160 1 166 4.76e-31 114
Msa0060150 MtrunA17_Chr3g0097101 40.136 147 81 2 1 142 16 160 6.43e-31 113
Msa0060150 MtrunA17_Chr3g0077501 40.260 154 71 3 1 142 1 145 1.84e-30 112
Msa0060150 MtrunA17_Chr7g0220111 37.912 182 94 5 1 178 1 167 4.12e-30 111
Msa0060150 MtrunA17_Chr6g0474371 37.572 173 93 4 1 161 1 170 1.23e-29 108
Msa0060150 MtrunA17_Chr5g0411691 33.906 233 120 8 1 213 1 219 1.28e-29 110
Msa0060150 MtrunA17_Chr4g0061671 43.056 144 78 3 1 141 1 143 1.48e-29 108
Msa0060150 MtrunA17_Chr3g0122251 38.953 172 92 5 1 160 1 171 1.60e-29 110
Msa0060150 MtrunA17_Chr2g0279821 37.791 172 77 4 1 161 1 153 3.16e-29 108
Msa0060150 MtrunA17_Chr6g0455511 37.912 182 94 6 1 178 1 167 3.23e-29 109
Msa0060150 MtrunA17_Chr5g0420081 38.824 170 94 5 1 161 1 169 3.92e-29 108
Msa0060150 MtrunA17_Chr2g0284911 40.136 147 81 3 1 142 16 160 6.81e-29 108
Msa0060150 MtrunA17_Chr8g0380021 39.456 147 82 2 1 142 17 161 1.20e-28 107
Msa0060150 MtrunA17_Chr8g0351031 36.686 169 91 4 1 157 1 165 2.77e-28 106
Msa0060150 MtrunA17_Chr7g0246431 35.882 170 98 3 1 161 1 168 5.51e-28 105
Msa0060150 MtrunA17_Chr8g0351041 37.500 152 83 3 1 144 1 148 1.66e-27 102
Msa0060150 MtrunA17_Chr1g0204111 39.752 161 87 4 1 155 17 173 3.29e-27 104
Msa0060150 MtrunA17_Chr4g0057151 37.427 171 92 4 1 160 1 167 3.67e-27 102
Msa0060150 MtrunA17_Chr5g0420091 35.135 185 95 5 1 165 1 180 1.61e-26 101
Msa0060150 MtrunA17_Chr4g0049541 37.013 154 77 4 1 143 1 145 7.50e-26 99.8
Msa0060150 MtrunA17_Chr4g0018421 33.333 171 103 3 1 161 1 170 1.52e-25 98.6
Msa0060150 MtrunA17_Chr5g0412461 37.278 169 92 4 1 158 1 166 1.97e-25 99.0
Msa0060150 MtrunA17_Chr5g0427401 36.686 169 94 5 1 160 1 165 1.92e-24 96.3
Msa0060150 MtrunA17_Chr5g0412271 38.012 171 88 6 1 158 1 166 2.70e-24 95.9
Msa0060150 MtrunA17_Chr4g0049901 32.110 218 123 6 1 200 27 237 3.35e-24 95.9
Msa0060150 MtrunA17_Chr1g0173161 60.000 70 27 1 1 70 1 69 4.70e-24 91.3
Msa0060150 MtrunA17_Chr4g0020221 57.333 75 30 1 1 75 1 73 3.27e-23 93.6
Msa0060150 MtrunA17_Chr2g0308251 58.462 65 27 0 1 65 1 65 2.40e-22 87.0
Msa0060150 MtrunA17_Chr7g0246381 58.065 62 26 0 1 62 1 62 6.39e-22 85.5
Msa0060150 MtrunA17_Chr8g0377561 61.404 57 22 0 1 57 1 57 2.87e-21 84.3
Msa0060150 MtrunA17_Chr5g0427921 57.627 59 25 0 1 59 1 59 3.22e-19 78.2
Msa0060150 MtrunA17_Chr4g0044071 56.140 57 25 0 1 57 1 57 5.56e-19 79.0
Msa0060150 MtrunA17_Chr5g0425191 54.386 57 26 0 1 57 1 57 9.48e-19 78.2
Msa0060150 MtrunA17_Chr3g0134451 42.308 104 54 3 1 101 1 101 1.47e-18 82.0
Msa0060150 MtrunA17_Chr8g0379021 48.438 64 33 0 2 65 12 75 7.29e-18 77.8
Msa0060150 MtrunA17_Chr4g0060841 39.423 104 63 0 1 104 1 104 2.95e-17 79.0
Msa0060150 MtrunA17_Chr2g0333981 44.000 75 40 1 1 75 11 83 5.83e-17 75.5
Msa0060150 MtrunA17_Chr3g0089141 34.711 121 62 3 2 106 9 128 2.21e-16 74.7
Msa0060150 MtrunA17_Chr1g0208561 47.143 70 35 1 2 71 9 76 3.36e-16 74.3
Msa0060150 MtrunA17_Chr4g0052081 55.000 60 27 0 1 60 1 60 4.39e-16 73.2
Msa0060150 MtrunA17_Chr5g0419601 37.097 124 53 4 1 99 8 131 5.74e-16 73.9
Msa0060150 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.33e-15 70.5
Msa0060150 MtrunA17_Chr1g0208581 50.000 66 32 1 2 66 9 74 1.66e-15 72.4
Msa0060150 MtrunA17_Chr1g0175611 37.975 79 47 1 1 79 1 77 1.74e-15 71.2
Msa0060150 MtrunA17_Chr3g0099421 50.000 70 33 1 2 71 34 101 1.86e-15 72.8
Msa0060150 MtrunA17_Chr2g0317481 51.515 66 31 1 2 66 9 74 2.47e-15 72.0
Msa0060150 MtrunA17_Chr2g0317451 51.515 66 31 1 2 66 9 74 2.47e-15 72.0
Msa0060150 MtrunA17_Chr1g0149391 51.515 66 31 1 2 66 9 74 3.05e-15 72.0
Msa0060150 MtrunA17_Chr4g0052061 47.541 61 32 0 1 61 1 61 3.45e-15 70.1
Msa0060150 MtrunA17_Chr1g0187361 50.000 66 32 1 2 66 9 74 4.10e-15 71.6
Msa0060150 MtrunA17_Chr8g0376821 40.000 65 39 0 1 65 1 65 4.24e-15 70.5
Msa0060150 MtrunA17_Chr1g0188671 50.000 66 32 1 2 66 47 112 4.65e-15 72.0
Msa0060150 MtrunA17_Chr1g0206701 48.485 66 33 1 2 66 9 74 5.84e-15 71.2
Msa0060150 MtrunA17_Chr2g0292791 50.000 66 32 1 2 66 9 74 6.87e-15 70.9
Msa0060150 MtrunA17_Chr1g0169761 40.000 65 39 0 1 65 1 65 1.02e-14 69.3
Msa0060150 MtrunA17_Chr3g0099411 48.485 66 33 1 2 66 9 74 1.05e-14 70.1
Msa0060150 MtrunA17_Chr1g0206721 48.485 66 33 1 2 66 9 74 1.12e-14 70.5
Msa0060150 MtrunA17_Chr8g0355091 48.485 66 33 1 2 66 9 74 1.14e-14 70.5
Msa0060150 MtrunA17_Chr5g0422421 51.515 66 31 1 2 66 9 74 1.56e-14 70.1
Msa0060150 MtrunA17_Chr5g0422941 40.625 96 41 2 2 81 9 104 1.63e-14 70.1
Msa0060150 MtrunA17_Chr8g0357771 43.548 62 35 0 1 62 1 62 1.71e-14 68.9
Msa0060150 MtrunA17_Chr1g0206991 46.970 66 34 1 2 66 9 74 2.39e-14 68.6
Msa0060150 MtrunA17_Chr1g0175601 40.000 65 39 0 1 65 1 65 2.48e-14 68.6
Msa0060150 MtrunA17_Chr1g0180591 36.923 65 41 0 1 65 1 65 3.21e-14 68.2
Msa0060150 MtrunA17_Chr2g0300421 48.333 60 31 0 2 61 9 68 3.62e-14 67.8
Msa0060150 MtrunA17_Chr2g0325971 44.286 70 37 1 2 71 9 76 6.56e-14 68.2
Msa0060150 MtrunA17_Chr4g0074101 36.923 65 41 0 1 65 1 65 9.27e-14 67.0
Msa0060150 MtrunA17_Chr1g0166611 51.064 47 23 0 13 59 17 63 3.19e-13 64.3
Msa0060150 MtrunA17_Chr8g0356071 41.538 65 38 0 1 65 1 65 4.10e-13 64.7
Msa0060150 MtrunA17_Chr4g0018951 50.000 52 26 0 14 65 24 75 6.00e-13 64.3
Msa0060150 MtrunA17_Chr3g0111841 51.852 54 26 0 8 61 2 55 7.43e-13 61.6
Msa0060150 MtrunA17_Chr6g0457851 27.027 148 88 5 1 132 11 154 1.32e-12 65.9
Msa0060150 MtrunA17_Chr2g0300441 25.778 225 117 9 2 206 7 201 1.44e-12 64.7
Msa0060150 MtrunA17_Chr3g0089151 43.939 66 36 1 2 66 9 74 1.74e-12 62.4
Msa0060150 MtrunA17_Chr3g0119901 38.028 71 42 1 1 71 8 76 2.23e-12 63.5
Msa0060150 MtrunA17_Chr6g0449851 45.161 62 34 0 1 62 1 62 2.38e-12 64.7
Msa0060150 MtrunA17_Chr3g0085241 39.437 71 41 1 1 71 40 108 5.16e-12 63.2
Msa0060150 MtrunA17_Chr1g0187351 39.437 71 39 2 11 80 1 68 5.41e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060150 AT5G20240.1 53.883 206 84 1 1 206 1 195 1.12e-73 222
Msa0060150 AT5G20240.2 61.538 143 55 0 1 143 1 143 1.98e-61 189
Msa0060150 AT5G23260.2 39.264 163 93 2 1 157 1 163 1.89e-36 128
Msa0060150 AT5G23260.4 39.264 163 93 2 1 157 17 179 3.46e-36 128
Msa0060150 AT3G54340.1 42.857 140 80 0 1 140 1 140 5.66e-36 126
Msa0060150 AT5G23260.1 38.994 159 94 2 1 157 17 174 9.13e-36 127
Msa0060150 AT5G23260.3 38.994 159 85 2 1 157 1 149 2.16e-34 122
Msa0060150 AT5G13790.1 47.887 142 64 3 1 139 1 135 4.25e-34 122
Msa0060150 AT5G13790.2 47.518 141 69 3 1 139 1 138 7.19e-34 122
Msa0060150 AT3G58780.1 40.816 147 80 2 1 142 16 160 2.18e-32 117
Msa0060150 AT3G58780.5 40.816 147 80 2 1 142 22 166 2.53e-32 117
Msa0060150 AT5G51870.4 33.036 224 118 6 1 199 1 217 3.10e-32 116
Msa0060150 AT5G51870.3 33.036 224 118 6 1 199 11 227 4.46e-32 116
Msa0060150 AT2G42830.1 40.816 147 80 2 1 142 16 160 5.19e-32 117
Msa0060150 AT2G42830.2 40.816 147 80 2 1 142 16 160 5.86e-32 116
Msa0060150 AT3G58780.4 40.411 146 80 2 1 141 16 159 7.13e-32 117
Msa0060150 AT3G61120.1 35.909 220 129 5 1 213 1 215 1.92e-31 115
Msa0060150 AT5G60910.1 39.773 176 82 5 1 160 1 168 2.12e-31 115
Msa0060150 AT5G51870.1 33.654 208 126 4 1 199 1 205 3.66e-31 113
Msa0060150 AT1G26310.1 41.317 167 88 3 1 157 1 167 5.09e-31 114
Msa0060150 AT1G24260.1 33.333 228 129 6 1 213 1 220 1.39e-30 113
Msa0060150 AT1G24260.2 33.188 229 129 6 1 213 1 221 1.79e-30 113
Msa0060150 AT2G45660.1 37.647 170 95 3 1 161 1 168 2.03e-30 112
Msa0060150 AT3G58780.2 39.456 147 75 2 1 142 16 153 2.30e-30 112
Msa0060150 AT3G57390.3 34.826 201 115 4 1 188 1 198 3.14e-30 111
Msa0060150 AT1G69120.2 39.412 170 93 5 1 161 1 169 3.86e-30 111
Msa0060150 AT3G57390.1 34.826 201 115 4 1 188 1 198 6.11e-30 111
Msa0060150 AT1G69120.1 39.412 170 93 5 1 161 1 169 6.58e-30 111
Msa0060150 AT5G51870.2 39.189 148 80 3 1 141 1 145 6.88e-30 109
Msa0060150 AT3G02310.2 43.151 146 67 3 1 136 1 140 8.91e-30 109
Msa0060150 AT3G02310.1 38.624 189 103 6 1 177 1 188 9.09e-30 111
Msa0060150 AT4G11880.2 39.634 164 83 4 1 156 1 156 9.22e-30 109
Msa0060150 AT4G11880.3 39.634 164 83 4 1 156 1 156 9.22e-30 109
Msa0060150 AT2G45660.2 38.926 149 84 2 1 144 1 147 1.03e-29 108
Msa0060150 AT1G24260.3 41.892 148 69 3 1 136 1 143 1.11e-29 110
Msa0060150 AT4G24540.1 39.881 168 89 4 1 158 1 166 1.61e-29 109
Msa0060150 AT5G51870.5 39.189 148 80 3 1 141 24 168 1.95e-29 108
Msa0060150 AT3G58780.3 35.882 170 81 2 1 142 16 185 2.01e-29 110
Msa0060150 AT4G09960.1 40.136 147 81 2 1 142 1 145 2.02e-29 109
Msa0060150 AT4G09960.6 40.136 147 81 2 1 142 2 146 2.11e-29 109
Msa0060150 AT4G09960.5 40.136 147 81 2 1 142 11 155 2.95e-29 109
Msa0060150 AT2G45650.1 36.723 177 102 3 1 169 1 175 3.61e-29 109
Msa0060150 AT4G22950.2 39.634 164 90 3 1 160 1 159 3.67e-29 107
Msa0060150 AT4G09960.3 40.136 147 81 2 1 142 27 171 4.11e-29 109
Msa0060150 AT3G57230.1 37.158 183 97 5 1 170 1 178 4.46e-29 108
Msa0060150 AT3G57230.4 37.158 183 97 5 1 170 1 178 4.46e-29 108
Msa0060150 AT5G15800.1 43.262 141 74 3 1 136 1 140 4.81e-29 109
Msa0060150 AT4G11880.4 40.645 155 76 4 1 147 1 147 4.88e-29 108
Msa0060150 AT4G11880.1 40.645 155 76 4 1 147 1 147 4.88e-29 108
Msa0060150 AT4G09960.2 40.278 144 79 2 1 139 1 142 4.97e-29 108
Msa0060150 AT5G15800.2 43.262 141 74 3 1 136 1 140 5.15e-29 109
Msa0060150 AT3G57230.2 39.456 147 77 3 1 140 1 142 9.70e-29 105
Msa0060150 AT4G09960.4 38.012 171 91 3 1 166 96 256 1.21e-28 110
Msa0060150 AT4G22950.3 39.634 164 90 3 1 160 1 159 1.41e-28 107
Msa0060150 AT4G22950.1 39.634 164 90 3 1 160 1 159 1.41e-28 107
Msa0060150 AT3G30260.1 38.621 145 81 4 1 139 1 143 2.48e-28 107
Msa0060150 AT2G14210.1 36.585 205 98 7 1 179 1 199 8.91e-28 105
Msa0060150 AT2G14210.2 36.585 205 98 7 1 179 1 199 1.31e-27 105
Msa0060150 AT4G18960.1 39.041 146 82 2 2 142 18 161 2.92e-27 104
Msa0060150 AT4G37940.4 35.870 184 88 5 1 173 1 165 1.32e-26 102
Msa0060150 AT4G37940.3 36.364 154 78 3 1 143 1 145 1.52e-26 100
Msa0060150 AT4G37940.1 38.095 147 71 3 1 136 1 138 5.17e-26 100
Msa0060150 AT2G03710.3 34.524 168 102 3 1 160 1 168 8.07e-26 99.4
Msa0060150 AT2G03710.2 34.524 168 102 3 1 160 1 168 1.09e-25 100
Msa0060150 AT5G62165.3 35.465 172 96 4 1 161 1 168 1.09e-25 99.4
Msa0060150 AT5G62165.1 35.465 172 96 4 1 161 1 168 1.09e-25 99.4
Msa0060150 AT5G62165.2 35.465 172 96 4 1 161 1 168 1.09e-25 99.4
Msa0060150 AT2G03710.1 34.524 168 102 3 1 160 1 168 1.14e-25 100
Msa0060150 AT5G62165.17 35.762 151 86 3 1 144 1 147 1.31e-25 97.8
Msa0060150 AT5G62165.12 35.762 151 86 3 1 144 1 147 1.31e-25 97.8
Msa0060150 AT5G62165.11 35.762 151 86 3 1 144 1 147 1.31e-25 97.8
Msa0060150 AT2G22630.1 36.022 186 99 4 1 173 1 179 2.75e-25 99.0
Msa0060150 AT2G22630.2 36.022 186 99 4 1 173 1 179 2.75e-25 99.0
Msa0060150 AT5G62165.6 36.242 149 84 3 1 142 1 145 3.06e-25 96.7
Msa0060150 AT5G62165.9 36.242 149 84 3 1 142 1 145 3.06e-25 96.7
Msa0060150 AT5G62165.7 36.242 149 84 3 1 142 1 145 3.06e-25 96.7
Msa0060150 AT5G62165.8 36.242 149 84 3 1 142 1 145 3.06e-25 96.7
Msa0060150 AT5G62165.13 36.242 149 84 3 1 142 1 145 3.06e-25 96.7
Msa0060150 AT5G51860.1 31.915 188 116 3 1 178 1 186 3.99e-25 98.2
Msa0060150 AT5G10140.1 35.165 182 110 3 1 178 1 178 2.43e-24 95.5
Msa0060150 AT5G51860.2 34.000 150 91 2 1 144 1 148 2.65e-24 95.5
Msa0060150 AT5G62165.10 36.310 168 86 4 1 161 1 154 3.75e-24 95.1
Msa0060150 AT5G62165.4 36.310 168 86 4 1 161 1 154 3.75e-24 95.1
Msa0060150 AT1G71692.1 34.659 176 98 4 1 160 1 175 6.06e-24 95.1
Msa0060150 AT5G65060.1 32.967 182 114 3 1 178 1 178 6.31e-24 94.4
Msa0060150 AT5G10140.3 37.324 142 85 2 1 142 1 138 6.57e-24 94.4
Msa0060150 AT2G22540.3 36.686 169 93 5 1 158 1 166 7.19e-24 95.5
Msa0060150 AT2G22540.1 36.686 169 93 5 1 158 1 166 7.19e-24 95.5
Msa0060150 AT5G10140.2 37.324 142 85 2 1 142 1 138 7.32e-24 93.6
Msa0060150 AT5G65050.3 28.713 202 132 4 1 198 1 194 1.46e-23 93.6
Msa0060150 AT5G10140.4 37.324 142 85 2 1 142 1 138 1.71e-23 93.2
Msa0060150 AT5G65050.5 30.244 205 114 8 1 198 1 183 2.51e-22 90.1
Msa0060150 AT5G62165.14 54.795 73 31 1 1 73 1 71 7.28e-22 86.7
Msa0060150 AT5G65060.3 34.146 164 100 3 1 160 1 160 1.77e-21 87.8
Msa0060150 AT2G22540.2 34.911 169 91 5 1 158 1 161 1.11e-20 87.0
Msa0060150 AT5G65060.2 32.418 182 104 4 1 178 1 167 1.26e-20 85.5
Msa0060150 AT1G31140.1 34.694 147 90 2 1 142 1 146 3.78e-20 85.1
Msa0060150 AT5G65050.1 27.778 198 125 4 1 198 1 180 4.18e-20 84.3
Msa0060150 AT1G31140.2 34.228 149 90 2 1 142 1 148 7.44e-20 84.3
Msa0060150 AT5G65050.2 31.098 164 105 3 1 160 1 160 7.57e-20 83.2
Msa0060150 AT5G65070.1 32.335 167 101 6 1 161 1 161 4.27e-19 82.0
Msa0060150 AT1G77080.4 31.188 202 127 4 1 198 1 194 6.30e-19 81.3
Msa0060150 AT1G77080.5 33.143 175 109 3 1 171 1 171 7.53e-19 80.5
Msa0060150 AT1G77080.2 32.673 202 120 4 1 198 1 190 8.72e-19 80.9
Msa0060150 AT1G77080.11 34.146 164 100 3 1 160 1 160 2.83e-18 79.3
Msa0060150 AT5G65080.3 29.885 174 111 4 1 172 8 172 6.98e-18 78.6
Msa0060150 AT1G18750.1 37.864 103 64 0 1 103 1 103 8.37e-18 81.3
Msa0060150 AT1G18750.3 37.864 103 64 0 1 103 1 103 8.49e-18 81.3
Msa0060150 AT1G18750.4 37.864 103 64 0 1 103 1 103 9.79e-18 80.9
Msa0060150 AT5G65070.4 43.056 72 40 1 1 72 1 71 1.02e-17 77.0
Msa0060150 AT1G01530.1 28.821 229 119 8 1 202 6 217 1.19e-17 79.0
Msa0060150 AT1G77980.1 33.140 172 87 4 1 148 1 168 1.21e-17 80.1
Msa0060150 AT1G22130.1 37.500 128 63 5 1 115 1 124 1.56e-17 80.1
Msa0060150 AT5G65080.2 29.375 160 86 3 1 149 8 151 5.16e-17 76.6
Msa0060150 AT5G65070.2 43.056 72 40 1 1 72 1 71 7.07e-17 76.6
Msa0060150 AT5G65070.5 43.056 72 40 1 1 72 1 71 8.02e-17 76.3
Msa0060150 AT1G77950.3 49.296 71 35 1 1 71 1 70 1.00e-16 76.6
Msa0060150 AT1G77950.2 49.296 71 35 1 1 71 1 70 1.00e-16 76.6
Msa0060150 AT1G77950.1 49.296 71 35 1 1 71 1 70 1.00e-16 76.6
Msa0060150 AT1G77950.4 49.296 71 35 1 1 71 1 70 1.00e-16 76.6
Msa0060150 AT1G77080.8 29.646 226 126 7 1 198 1 221 1.81e-16 75.5
Msa0060150 AT5G65070.3 30.653 199 94 7 1 161 1 193 5.58e-16 74.3
Msa0060150 AT2G03060.3 33.654 104 69 0 1 104 1 104 5.80e-16 75.9
Msa0060150 AT2G03060.7 33.654 104 69 0 1 104 1 104 5.80e-16 75.9
Msa0060150 AT2G03060.1 33.654 104 69 0 1 104 1 104 5.80e-16 75.9
Msa0060150 AT2G03060.2 33.654 104 69 0 1 104 1 104 5.81e-16 75.9
Msa0060150 AT1G77080.12 35.915 142 83 2 1 142 1 134 6.15e-16 72.4
Msa0060150 AT1G65360.1 45.588 68 34 1 1 68 6 70 4.53e-15 71.6
Msa0060150 AT4G37435.1 43.836 73 38 1 1 70 1 73 1.73e-14 69.3
Msa0060150 AT2G34440.1 39.726 73 42 1 1 73 1 71 2.91e-14 68.6
Msa0060150 AT1G47760.1 36.634 101 58 2 1 101 1 95 3.16e-14 68.6
Msa0060150 AT1G69540.1 35.922 103 65 1 1 103 1 102 4.14e-14 70.5
Msa0060150 AT1G69540.2 35.922 103 65 1 1 103 1 102 4.45e-14 70.5
Msa0060150 AT4G36590.1 49.180 61 31 0 2 62 7 67 1.23e-13 68.2
Msa0060150 AT5G60440.1 45.455 66 35 1 2 66 7 72 3.83e-13 67.4
Msa0060150 AT3G66656.1 37.500 72 43 1 1 72 1 70 4.53e-13 65.5
Msa0060150 AT2G24840.1 42.254 71 39 1 1 71 62 130 4.75e-13 66.6
Msa0060150 AT3G04100.1 43.333 60 34 0 2 61 14 73 4.69e-12 63.2
Msa0060150 AT2G26320.1 39.437 71 43 0 1 71 17 87 6.26e-12 60.5
Msa0060150 AT1G72350.1 50.000 56 28 0 2 57 43 98 1.08e-11 62.4

Find 44 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTAAAAGTCTTAATTT+TGG 0.190846 1_2:+17709634 None:intergenic
ACTATCATCTTTGCCCCTTC+TGG 0.275062 1_2:-17711411 Msa0060150:CDS
AAGAATAATTACGTGGTAGA+AGG 0.329062 1_2:+17711366 None:intergenic
CAAGAAATTGATGAGCTTAG+AGG 0.347012 1_2:-17710801 Msa0060150:CDS
AAGCATCTGGAAAGAGGCTT+TGG 0.351747 1_2:-17711202 Msa0060150:CDS
GGCTGAACACGAAAGGAAAA+TGG 0.369681 1_2:+17709695 None:intergenic
CACGAAAGGAAAATGGCATC+TGG 0.379047 1_2:+17709702 None:intergenic
GATCTTGGAGGAGGAGAATA+GGG 0.403567 1_2:-17709940 Msa0060150:CDS
ATTAAGGTTGATTGATATGC+TGG 0.409544 1_2:-17711237 Msa0060150:intron
TGCTTATTAGGACAAGATCT+TGG 0.409758 1_2:-17709955 Msa0060150:intron
AGATCTTGGAGGAGGAGAAT+AGG 0.410258 1_2:-17709941 Msa0060150:CDS
ATACGTTTCTCTTGACCATC+TGG 0.418651 1_2:+17710074 None:intergenic
CCTCACTATCCGTGACAAAC+AGG 0.441523 1_2:-17710759 Msa0060150:intron
GTCTCTCGATTTCATTCCTT+AGG 0.447478 1_2:+17711012 None:intergenic
AGCATCTGGAAAGAGGCTTT+GGG 0.457669 1_2:-17711201 Msa0060150:CDS
GAGGTAAGATTGAGATCAAG+AGG 0.465455 1_2:-17711536 Msa0060150:CDS
AGTGGAAGGTGGGAGAGAAA+TGG 0.475072 1_2:-17709771 Msa0060150:CDS
AAATTATTTCAGGCACTTGA+AGG 0.480374 1_2:-17710849 Msa0060150:intron
TTGAACTATGGCAGGACCTA+AGG 0.499346 1_2:-17711028 Msa0060150:intron
AAGGATTGAGATATGGGGAG+AGG 0.503146 1_2:-17711555 None:intergenic
AGAAGGGGCAAAGATGATAG+TGG 0.519811 1_2:+17711413 None:intergenic
CAACATATGGCAGTGGAAGG+TGG 0.520579 1_2:-17709782 Msa0060150:CDS
TTTCAGGCACTTGAAGGGAA+AGG 0.528239 1_2:-17710843 Msa0060150:intron
AACATATGGCAGTGGAAGGT+GGG 0.528584 1_2:-17709781 Msa0060150:CDS
AATTATTTCAGGCACTTGAA+GGG 0.530691 1_2:-17710848 Msa0060150:intron
TTATTAGGACAAGATCTTGG+AGG 0.534898 1_2:-17709952 Msa0060150:intron
TTAGGACAAGATCTTGGAGG+AGG 0.546605 1_2:-17709949 Msa0060150:intron
AGAATAATTACGTGGTAGAA+GGG 0.558184 1_2:+17711367 None:intergenic
TTCATGCATCTTTCCAGAAG+GGG 0.567431 1_2:+17711398 None:intergenic
AGTAGTGAGTGAAGCTGCAT+AGG 0.580197 1_2:+17709674 None:intergenic
ATTCATGCATCTTTCCAGAA+GGG 0.584567 1_2:+17711397 None:intergenic
ACGAAAGGAAAATGGCATCT+GGG 0.585200 1_2:+17709703 None:intergenic
TATTCATGCATCTTTCCAGA+AGG 0.586845 1_2:+17711396 None:intergenic
CTGCATAGGCTGAACACGAA+AGG 0.591967 1_2:+17709688 None:intergenic
ACGACATGGAAATTAAGCTC+AGG 0.594125 1_2:-17710974 Msa0060150:intron
CAACAACATATGGCAGTGGA+AGG 0.597953 1_2:-17709785 Msa0060150:CDS
CCTGTTTGTCACGGATAGTG+AGG 0.602138 1_2:+17710759 None:intergenic
TGAAATCGAGAGACTCAAGA+AGG 0.618420 1_2:-17711003 Msa0060150:CDS
GATGAATTTGATGAGAGTAG+TGG 0.619893 1_2:-17709740 Msa0060150:CDS
GCAGCAACAACATATGGCAG+TGG 0.620712 1_2:-17709789 Msa0060150:CDS
CAAGAAGGAGAATGACGACA+TGG 0.628715 1_2:-17710988 Msa0060150:CDS
AAATGGCTACCTGTTTGTCA+CGG 0.636051 1_2:+17710750 None:intergenic
GCAGATGGAAGTATACCAGA+TGG 0.657480 1_2:-17710089 Msa0060150:intron
GCTTTGGGATGCAAAACATG+AGG 0.691605 1_2:-17711186 Msa0060150:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTATTAAAAAAAA+AGG - chr1_2:17711313-17711332 Msa0060150:intron 0.0%
!!! ATAATTTTTATTAAAAAAAA+AGG - chr1_2:17711313-17711332 Msa0060150:intron 0.0%
!!! TTTTTTCTTTTCTTTAAAAA+AGG - chr1_2:17710061-17710080 Msa0060150:intron 10.0%
!! AATTATACATAAATTATTTC+AGG - chr1_2:17710302-17710321 Msa0060150:intron 10.0%
!! TACTAATTTATTGAATTAAA+AGG - chr1_2:17710455-17710474 Msa0060150:intron 10.0%
!! ACTAATTTATTGAATTAAAA+GGG - chr1_2:17710456-17710475 Msa0060150:intron 10.0%
!!! TTTTTTCTTTTCTTTAAAAA+AGG - chr1_2:17710061-17710080 Msa0060150:intron 10.0%
!! AATTATACATAAATTATTTC+AGG - chr1_2:17710302-17710321 Msa0060150:intron 10.0%
!! TACTAATTTATTGAATTAAA+AGG - chr1_2:17710455-17710474 Msa0060150:intron 10.0%
!! ACTAATTTATTGAATTAAAA+GGG - chr1_2:17710456-17710475 Msa0060150:intron 10.0%
!!! AATTTTTATTTCATGATTGA+TGG - chr1_2:17709836-17709855 Msa0060150:intron 15.0%
!!! AGTTTTAAACAATTTTTTGT+TGG - chr1_2:17709894-17709913 Msa0060150:intron 15.0%
!!! AATTAGTTTTGTTGAAAAAA+TGG + chr1_2:17710431-17710450 None:intergenic 15.0%
!!! TATCAATATATATTTTTGGT+TGG + chr1_2:17710647-17710666 None:intergenic 15.0%
!!! CGATTATCAATATATATTTT+TGG + chr1_2:17710651-17710670 None:intergenic 15.0%
!!! TTACTAAAAGTCTTAATTTT+GGG + chr1_2:17711529-17711548 None:intergenic 15.0%
!!! AATTTTTATTTCATGATTGA+TGG - chr1_2:17709836-17709855 Msa0060150:intron 15.0%
!!! AGTTTTAAACAATTTTTTGT+TGG - chr1_2:17709894-17709913 Msa0060150:intron 15.0%
!!! AATTAGTTTTGTTGAAAAAA+TGG + chr1_2:17710431-17710450 None:intergenic 15.0%
!!! TATCAATATATATTTTTGGT+TGG + chr1_2:17710647-17710666 None:intergenic 15.0%
!!! CGATTATCAATATATATTTT+TGG + chr1_2:17710651-17710670 None:intergenic 15.0%
!!! TTACTAAAAGTCTTAATTTT+GGG + chr1_2:17711529-17711548 None:intergenic 15.0%
!! ATTAATGTTATGTTGAACTA+TGG - chr1_2:17710121-17710140 Msa0060150:intron 20.0%
!!! GGCTTATTTAATTTATAACA+AGG + chr1_2:17710233-17710252 None:intergenic 20.0%
!! ATATATACTCCATAAATTTC+AGG - chr1_2:17710262-17710281 Msa0060150:intron 20.0%
!!! TTTTTGGTTGGAAAAAATTT+AGG + chr1_2:17710635-17710654 None:intergenic 20.0%
!!! TTGAACATTTTCAAAGAAAT+TGG - chr1_2:17710725-17710744 Msa0060150:intron 20.0%
!!! GTTACTAAAAGTCTTAATTT+TGG + chr1_2:17711530-17711549 None:intergenic 20.0%
!! ATTAATGTTATGTTGAACTA+TGG - chr1_2:17710121-17710140 Msa0060150:intron 20.0%
!!! GGCTTATTTAATTTATAACA+AGG + chr1_2:17710233-17710252 None:intergenic 20.0%
!! ATATATACTCCATAAATTTC+AGG - chr1_2:17710262-17710281 Msa0060150:intron 20.0%
!!! TTTTTGGTTGGAAAAAATTT+AGG + chr1_2:17710635-17710654 None:intergenic 20.0%
!!! TTGAACATTTTCAAAGAAAT+TGG - chr1_2:17710725-17710744 Msa0060150:intron 20.0%
!!! GTTACTAAAAGTCTTAATTT+TGG + chr1_2:17711530-17711549 None:intergenic 20.0%
! ACATATTCAAAGAGAAAAAG+TGG - chr1_2:17709675-17709694 Msa0060150:CDS 25.0%
! CATATTCAAAGAGAAAAAGT+GGG - chr1_2:17709676-17709695 Msa0060150:CDS 25.0%
! AAAACTCAAGAATAATTACG+TGG + chr1_2:17709805-17709824 None:intergenic 25.0%
!! TTTTGTTGGTCATGAAATTA+AGG - chr1_2:17709908-17709927 Msa0060150:intron 25.0%
! TGGAGTATATATAGTTGAAA+TGG + chr1_2:17710254-17710273 None:intergenic 25.0%
!!! AAAAATTTAGGATGATGGAA+TGG + chr1_2:17710623-17710642 None:intergenic 25.0%
!! TTGGAAAAAATTTAGGATGA+TGG + chr1_2:17710628-17710647 None:intergenic 25.0%
!! TCGTGTAAACTATTTTCATT+TGG - chr1_2:17710668-17710687 Msa0060150:intron 25.0%
!! CATTTTCAAAGAAATTGGAT+TGG - chr1_2:17710730-17710749 Msa0060150:intron 25.0%
!! TGATTCAGTCATTGATTAAA+TGG - chr1_2:17710786-17710805 Msa0060150:CDS 25.0%
! ACATATTCAAAGAGAAAAAG+TGG - chr1_2:17709675-17709694 Msa0060150:CDS 25.0%
! CATATTCAAAGAGAAAAAGT+GGG - chr1_2:17709676-17709695 Msa0060150:CDS 25.0%
! AAAACTCAAGAATAATTACG+TGG + chr1_2:17709805-17709824 None:intergenic 25.0%
!! TTTTGTTGGTCATGAAATTA+AGG - chr1_2:17709908-17709927 Msa0060150:intron 25.0%
! TGGAGTATATATAGTTGAAA+TGG + chr1_2:17710254-17710273 None:intergenic 25.0%
!!! AAAAATTTAGGATGATGGAA+TGG + chr1_2:17710623-17710642 None:intergenic 25.0%
!! TTGGAAAAAATTTAGGATGA+TGG + chr1_2:17710628-17710647 None:intergenic 25.0%
!! TCGTGTAAACTATTTTCATT+TGG - chr1_2:17710668-17710687 Msa0060150:intron 25.0%
!! CATTTTCAAAGAAATTGGAT+TGG - chr1_2:17710730-17710749 Msa0060150:intron 25.0%
!! TGATTCAGTCATTGATTAAA+TGG - chr1_2:17710786-17710805 Msa0060150:CDS 25.0%
AGAATAATTACGTGGTAGAA+GGG + chr1_2:17709797-17709816 None:intergenic 30.0%
AAGAATAATTACGTGGTAGA+AGG + chr1_2:17709798-17709817 None:intergenic 30.0%
! ATTAAGGTTGATTGATATGC+TGG - chr1_2:17709924-17709943 Msa0060150:CDS 30.0%
!!! TTTCCTTTTTTGAGAGTTTC+TGG - chr1_2:17710037-17710056 Msa0060150:intron 30.0%
! AAAGGACAAAAGTGTGTTAT+AGG - chr1_2:17710079-17710098 Msa0060150:CDS 30.0%
! AAGGACAAAAGTGTGTTATA+GGG - chr1_2:17710080-17710099 Msa0060150:CDS 30.0%
! ACTAAAGTGCCTGAAATTTA+TGG + chr1_2:17710274-17710293 None:intergenic 30.0%
AAATTATTTCAGGCACTTGA+AGG - chr1_2:17710312-17710331 Msa0060150:intron 30.0%
AATTATTTCAGGCACTTGAA+GGG - chr1_2:17710313-17710332 Msa0060150:intron 30.0%
AATTAAAAGGGCTACCTATT+TGG - chr1_2:17710468-17710487 Msa0060150:intron 30.0%
! TTTTTACCACTAGACCAAAT+AGG + chr1_2:17710485-17710504 None:intergenic 30.0%
!! TCTAAAGCATGAAAGACTTT+TGG + chr1_2:17710592-17710611 None:intergenic 30.0%
TAGTGCATATCCATTAAACT+CGG - chr1_2:17710692-17710711 Msa0060150:intron 30.0%
TGACTGAATCAATTGAATCA+TGG + chr1_2:17710777-17710796 None:intergenic 30.0%
TACTTACATTCGAGATCAAA+TGG - chr1_2:17710930-17710949 Msa0060150:intron 30.0%
!! ACTTTTGTATTTGTTGCAGA+TGG - chr1_2:17711057-17711076 Msa0060150:intron 30.0%
TAGAACTGCAAAACAAGAAT+TGG + chr1_2:17711154-17711173 None:intergenic 30.0%
TTGTGCACATATTGCTTATT+AGG - chr1_2:17711194-17711213 Msa0060150:CDS 30.0%
!!! GAGACAATACTCACTTTTTT+TGG - chr1_2:17711274-17711293 Msa0060150:intron 30.0%
! CTAAAAGTCTTAATTTTGGG+TGG + chr1_2:17711526-17711545 None:intergenic 30.0%
AGAATAATTACGTGGTAGAA+GGG + chr1_2:17709797-17709816 None:intergenic 30.0%
AAGAATAATTACGTGGTAGA+AGG + chr1_2:17709798-17709817 None:intergenic 30.0%
! ATTAAGGTTGATTGATATGC+TGG - chr1_2:17709924-17709943 Msa0060150:CDS 30.0%
!!! TTTCCTTTTTTGAGAGTTTC+TGG - chr1_2:17710037-17710056 Msa0060150:intron 30.0%
! AAAGGACAAAAGTGTGTTAT+AGG - chr1_2:17710079-17710098 Msa0060150:CDS 30.0%
! AAGGACAAAAGTGTGTTATA+GGG - chr1_2:17710080-17710099 Msa0060150:CDS 30.0%
! ACTAAAGTGCCTGAAATTTA+TGG + chr1_2:17710274-17710293 None:intergenic 30.0%
AAATTATTTCAGGCACTTGA+AGG - chr1_2:17710312-17710331 Msa0060150:intron 30.0%
AATTATTTCAGGCACTTGAA+GGG - chr1_2:17710313-17710332 Msa0060150:intron 30.0%
AATTAAAAGGGCTACCTATT+TGG - chr1_2:17710468-17710487 Msa0060150:intron 30.0%
! TTTTTACCACTAGACCAAAT+AGG + chr1_2:17710485-17710504 None:intergenic 30.0%
!! TCTAAAGCATGAAAGACTTT+TGG + chr1_2:17710592-17710611 None:intergenic 30.0%
TAGTGCATATCCATTAAACT+CGG - chr1_2:17710692-17710711 Msa0060150:intron 30.0%
TGACTGAATCAATTGAATCA+TGG + chr1_2:17710777-17710796 None:intergenic 30.0%
TACTTACATTCGAGATCAAA+TGG - chr1_2:17710930-17710949 Msa0060150:intron 30.0%
!! ACTTTTGTATTTGTTGCAGA+TGG - chr1_2:17711057-17711076 Msa0060150:intron 30.0%
TAGAACTGCAAAACAAGAAT+TGG + chr1_2:17711154-17711173 None:intergenic 30.0%
TTGTGCACATATTGCTTATT+AGG - chr1_2:17711194-17711213 Msa0060150:CDS 30.0%
!!! GAGACAATACTCACTTTTTT+TGG - chr1_2:17711274-17711293 Msa0060150:intron 30.0%
! CTAAAAGTCTTAATTTTGGG+TGG + chr1_2:17711526-17711545 None:intergenic 30.0%
ATTCATGCATCTTTCCAGAA+GGG + chr1_2:17709767-17709786 None:intergenic 35.0%
TATTCATGCATCTTTCCAGA+AGG + chr1_2:17709768-17709787 None:intergenic 35.0%
!! GAGAGATATCAAAAAGCATC+TGG - chr1_2:17709946-17709965 Msa0060150:CDS 35.0%
!! ATCAAAAAGCATCTGGAAAG+AGG - chr1_2:17709953-17709972 Msa0060150:intron 35.0%
GATGCAAAACATGAGGTATA+AGG - chr1_2:17709982-17710001 Msa0060150:intron 35.0%
AAGCCAGAAACTCTCAAAAA+AGG + chr1_2:17710043-17710062 None:intergenic 35.0%
! CAAAAGTGTGTTATAGGGTT+TGG - chr1_2:17710085-17710104 Msa0060150:CDS 35.0%
ATGTTATGTTGAACTATGGC+AGG - chr1_2:17710125-17710144 Msa0060150:intron 35.0%
CAAGAAATTGATGAGCTTAG+AGG - chr1_2:17710360-17710379 Msa0060150:intron 35.0%
CAATTTAAGCCCTGCTAATA+CGG - chr1_2:17710531-17710550 Msa0060150:intron 35.0%
CATTTACTTCCGTATTAGCA+GGG + chr1_2:17710543-17710562 None:intergenic 35.0%
ACATTTACTTCCGTATTAGC+AGG + chr1_2:17710544-17710563 None:intergenic 35.0%
! AAGTCTTTCATGCTTTAGAC+CGG - chr1_2:17710593-17710612 Msa0060150:intron 35.0%
! CGAATGTAAGTATTGTAGTC+TGG + chr1_2:17710922-17710941 None:intergenic 35.0%
AAATGGATCGACAAATTGAC+TGG - chr1_2:17710947-17710966 Msa0060150:intron 35.0%
CTGATCTTGGCTACTATATT+GGG + chr1_2:17711017-17711036 None:intergenic 35.0%
ACTGATCTTGGCTACTATAT+TGG + chr1_2:17711018-17711037 None:intergenic 35.0%
TTAGATGCATTCACTGATCT+TGG + chr1_2:17711030-17711049 None:intergenic 35.0%
AAGAGCTAATCTTGTAGTTG+AGG + chr1_2:17711121-17711140 None:intergenic 35.0%
TGCTTATTAGGACAAGATCT+TGG - chr1_2:17711206-17711225 Msa0060150:CDS 35.0%
TTATTAGGACAAGATCTTGG+AGG - chr1_2:17711209-17711228 Msa0060150:CDS 35.0%
! GGAACTTAATTTTATCCTCC+AGG - chr1_2:17711242-17711261 Msa0060150:intron 35.0%
! TTTTCAGCAGCAACAACATA+TGG - chr1_2:17711366-17711385 Msa0060150:intron 35.0%
GATGAATTTGATGAGAGTAG+TGG - chr1_2:17711421-17711440 Msa0060150:CDS 35.0%
ATTCATGCATCTTTCCAGAA+GGG + chr1_2:17709767-17709786 None:intergenic 35.0%
TATTCATGCATCTTTCCAGA+AGG + chr1_2:17709768-17709787 None:intergenic 35.0%
!! GAGAGATATCAAAAAGCATC+TGG - chr1_2:17709946-17709965 Msa0060150:CDS 35.0%
!! ATCAAAAAGCATCTGGAAAG+AGG - chr1_2:17709953-17709972 Msa0060150:intron 35.0%
GATGCAAAACATGAGGTATA+AGG - chr1_2:17709982-17710001 Msa0060150:intron 35.0%
AAGCCAGAAACTCTCAAAAA+AGG + chr1_2:17710043-17710062 None:intergenic 35.0%
! CAAAAGTGTGTTATAGGGTT+TGG - chr1_2:17710085-17710104 Msa0060150:CDS 35.0%
ATGTTATGTTGAACTATGGC+AGG - chr1_2:17710125-17710144 Msa0060150:intron 35.0%
CAAGAAATTGATGAGCTTAG+AGG - chr1_2:17710360-17710379 Msa0060150:intron 35.0%
CAATTTAAGCCCTGCTAATA+CGG - chr1_2:17710531-17710550 Msa0060150:intron 35.0%
CATTTACTTCCGTATTAGCA+GGG + chr1_2:17710543-17710562 None:intergenic 35.0%
ACATTTACTTCCGTATTAGC+AGG + chr1_2:17710544-17710563 None:intergenic 35.0%
! AAGTCTTTCATGCTTTAGAC+CGG - chr1_2:17710593-17710612 Msa0060150:intron 35.0%
! CGAATGTAAGTATTGTAGTC+TGG + chr1_2:17710922-17710941 None:intergenic 35.0%
AAATGGATCGACAAATTGAC+TGG - chr1_2:17710947-17710966 Msa0060150:intron 35.0%
CTGATCTTGGCTACTATATT+GGG + chr1_2:17711017-17711036 None:intergenic 35.0%
ACTGATCTTGGCTACTATAT+TGG + chr1_2:17711018-17711037 None:intergenic 35.0%
TTAGATGCATTCACTGATCT+TGG + chr1_2:17711030-17711049 None:intergenic 35.0%
AAGAGCTAATCTTGTAGTTG+AGG + chr1_2:17711121-17711140 None:intergenic 35.0%
TGCTTATTAGGACAAGATCT+TGG - chr1_2:17711206-17711225 Msa0060150:CDS 35.0%
TTATTAGGACAAGATCTTGG+AGG - chr1_2:17711209-17711228 Msa0060150:CDS 35.0%
! GGAACTTAATTTTATCCTCC+AGG - chr1_2:17711242-17711261 Msa0060150:intron 35.0%
! TTTTCAGCAGCAACAACATA+TGG - chr1_2:17711366-17711385 Msa0060150:intron 35.0%
GATGAATTTGATGAGAGTAG+TGG - chr1_2:17711421-17711440 Msa0060150:CDS 35.0%
GAGGTAAGATTGAGATCAAG+AGG - chr1_2:17709625-17709644 Msa0060150:three_prime_UTR 40.0%
TTCATGCATCTTTCCAGAAG+GGG + chr1_2:17709766-17709785 None:intergenic 40.0%
GTCTCTCGATTTCATTCCTT+AGG + chr1_2:17710152-17710171 None:intergenic 40.0%
TGAAATCGAGAGACTCAAGA+AGG - chr1_2:17710158-17710177 Msa0060150:intron 40.0%
ACGACATGGAAATTAAGCTC+AGG - chr1_2:17710187-17710206 Msa0060150:intron 40.0%
AAATGGCTACCTGTTTGTCA+CGG + chr1_2:17710414-17710433 None:intergenic 40.0%
GGCTTAAATTGGAGATCTCT+CGG + chr1_2:17710522-17710541 None:intergenic 40.0%
CGTATTAGCAGGGCTTAAAT+TGG + chr1_2:17710533-17710552 None:intergenic 40.0%
! AGTCTTTCATGCTTTAGACC+GGG - chr1_2:17710594-17710613 Msa0060150:intron 40.0%
CAGAGATACACCGAGTTTAA+TGG + chr1_2:17710705-17710724 None:intergenic 40.0%
! TCGACAAATTGACTGGTTCA+CGG - chr1_2:17710954-17710973 Msa0060150:intron 40.0%
ATACGTTTCTCTTGACCATC+TGG + chr1_2:17711090-17711109 None:intergenic 40.0%
TATTGTCTCAAAGCTGTACC+TGG + chr1_2:17711263-17711282 None:intergenic 40.0%
ACGAAAGGAAAATGGCATCT+GGG + chr1_2:17711461-17711480 None:intergenic 40.0%
GAGGTAAGATTGAGATCAAG+AGG - chr1_2:17709625-17709644 Msa0060150:three_prime_UTR 40.0%
TTCATGCATCTTTCCAGAAG+GGG + chr1_2:17709766-17709785 None:intergenic 40.0%
GTCTCTCGATTTCATTCCTT+AGG + chr1_2:17710152-17710171 None:intergenic 40.0%
TGAAATCGAGAGACTCAAGA+AGG - chr1_2:17710158-17710177 Msa0060150:intron 40.0%
ACGACATGGAAATTAAGCTC+AGG - chr1_2:17710187-17710206 Msa0060150:intron 40.0%
AAATGGCTACCTGTTTGTCA+CGG + chr1_2:17710414-17710433 None:intergenic 40.0%
GGCTTAAATTGGAGATCTCT+CGG + chr1_2:17710522-17710541 None:intergenic 40.0%
CGTATTAGCAGGGCTTAAAT+TGG + chr1_2:17710533-17710552 None:intergenic 40.0%
! AGTCTTTCATGCTTTAGACC+GGG - chr1_2:17710594-17710613 Msa0060150:intron 40.0%
CAGAGATACACCGAGTTTAA+TGG + chr1_2:17710705-17710724 None:intergenic 40.0%
! TCGACAAATTGACTGGTTCA+CGG - chr1_2:17710954-17710973 Msa0060150:intron 40.0%
ATACGTTTCTCTTGACCATC+TGG + chr1_2:17711090-17711109 None:intergenic 40.0%
TATTGTCTCAAAGCTGTACC+TGG + chr1_2:17711263-17711282 None:intergenic 40.0%
ACGAAAGGAAAATGGCATCT+GGG + chr1_2:17711461-17711480 None:intergenic 40.0%
AGAAGGGGCAAAGATGATAG+TGG + chr1_2:17709751-17709770 None:intergenic 45.0%
ACTATCATCTTTGCCCCTTC+TGG - chr1_2:17709750-17709769 Msa0060150:CDS 45.0%
AAGCATCTGGAAAGAGGCTT+TGG - chr1_2:17709959-17709978 Msa0060150:intron 45.0%
AGCATCTGGAAAGAGGCTTT+GGG - chr1_2:17709960-17709979 Msa0060150:intron 45.0%
!! GCTTTGGGATGCAAAACATG+AGG - chr1_2:17709975-17709994 Msa0060150:intron 45.0%
TTGAACTATGGCAGGACCTA+AGG - chr1_2:17710133-17710152 Msa0060150:intron 45.0%
CAAGAAGGAGAATGACGACA+TGG - chr1_2:17710173-17710192 Msa0060150:intron 45.0%
TTTCAGGCACTTGAAGGGAA+AGG - chr1_2:17710318-17710337 Msa0060150:intron 45.0%
! GTCTTTCATGCTTTAGACCG+GGG - chr1_2:17710595-17710614 Msa0060150:intron 45.0%
! GCAGATGGAAGTATACCAGA+TGG - chr1_2:17711072-17711091 Msa0060150:intron 45.0%
TTAGGACAAGATCTTGGAGG+AGG - chr1_2:17711212-17711231 Msa0060150:CDS 45.0%
AGATCTTGGAGGAGGAGAAT+AGG - chr1_2:17711220-17711239 Msa0060150:CDS 45.0%
GATCTTGGAGGAGGAGAATA+GGG - chr1_2:17711221-17711240 Msa0060150:CDS 45.0%
CAACAACATATGGCAGTGGA+AGG - chr1_2:17711376-17711395 Msa0060150:intron 45.0%
AACATATGGCAGTGGAAGGT+GGG - chr1_2:17711380-17711399 Msa0060150:CDS 45.0%
CACGAAAGGAAAATGGCATC+TGG + chr1_2:17711462-17711481 None:intergenic 45.0%
GGCTGAACACGAAAGGAAAA+TGG + chr1_2:17711469-17711488 None:intergenic 45.0%
AGTAGTGAGTGAAGCTGCAT+AGG + chr1_2:17711490-17711509 None:intergenic 45.0%
AGAAGGGGCAAAGATGATAG+TGG + chr1_2:17709751-17709770 None:intergenic 45.0%
ACTATCATCTTTGCCCCTTC+TGG - chr1_2:17709750-17709769 Msa0060150:CDS 45.0%
AAGCATCTGGAAAGAGGCTT+TGG - chr1_2:17709959-17709978 Msa0060150:intron 45.0%
AGCATCTGGAAAGAGGCTTT+GGG - chr1_2:17709960-17709979 Msa0060150:intron 45.0%
!! GCTTTGGGATGCAAAACATG+AGG - chr1_2:17709975-17709994 Msa0060150:intron 45.0%
TTGAACTATGGCAGGACCTA+AGG - chr1_2:17710133-17710152 Msa0060150:intron 45.0%
CAAGAAGGAGAATGACGACA+TGG - chr1_2:17710173-17710192 Msa0060150:intron 45.0%
TTTCAGGCACTTGAAGGGAA+AGG - chr1_2:17710318-17710337 Msa0060150:intron 45.0%
! GTCTTTCATGCTTTAGACCG+GGG - chr1_2:17710595-17710614 Msa0060150:intron 45.0%
! GCAGATGGAAGTATACCAGA+TGG - chr1_2:17711072-17711091 Msa0060150:intron 45.0%
TTAGGACAAGATCTTGGAGG+AGG - chr1_2:17711212-17711231 Msa0060150:CDS 45.0%
AGATCTTGGAGGAGGAGAAT+AGG - chr1_2:17711220-17711239 Msa0060150:CDS 45.0%
GATCTTGGAGGAGGAGAATA+GGG - chr1_2:17711221-17711240 Msa0060150:CDS 45.0%
CAACAACATATGGCAGTGGA+AGG - chr1_2:17711376-17711395 Msa0060150:intron 45.0%
AACATATGGCAGTGGAAGGT+GGG - chr1_2:17711380-17711399 Msa0060150:CDS 45.0%
CACGAAAGGAAAATGGCATC+TGG + chr1_2:17711462-17711481 None:intergenic 45.0%
GGCTGAACACGAAAGGAAAA+TGG + chr1_2:17711469-17711488 None:intergenic 45.0%
AGTAGTGAGTGAAGCTGCAT+AGG + chr1_2:17711490-17711509 None:intergenic 45.0%
CCTGTTTGTCACGGATAGTG+AGG + chr1_2:17710405-17710424 None:intergenic 50.0%
CCTCACTATCCGTGACAAAC+AGG - chr1_2:17710402-17710421 Msa0060150:intron 50.0%
GGGCTACCTATTTGGTCTAG+TGG - chr1_2:17710476-17710495 Msa0060150:intron 50.0%
TGTCTCAAAGCTGTACCTGG+AGG + chr1_2:17711260-17711279 None:intergenic 50.0%
GCAGCAACAACATATGGCAG+TGG - chr1_2:17711372-17711391 Msa0060150:intron 50.0%
CAACATATGGCAGTGGAAGG+TGG - chr1_2:17711379-17711398 Msa0060150:CDS 50.0%
AGTGGAAGGTGGGAGAGAAA+TGG - chr1_2:17711390-17711409 Msa0060150:CDS 50.0%
CTGCATAGGCTGAACACGAA+AGG + chr1_2:17711476-17711495 None:intergenic 50.0%
CCTGTTTGTCACGGATAGTG+AGG + chr1_2:17710405-17710424 None:intergenic 50.0%
CCTCACTATCCGTGACAAAC+AGG - chr1_2:17710402-17710421 Msa0060150:intron 50.0%
GGGCTACCTATTTGGTCTAG+TGG - chr1_2:17710476-17710495 Msa0060150:intron 50.0%
TGTCTCAAAGCTGTACCTGG+AGG + chr1_2:17711260-17711279 None:intergenic 50.0%
GCAGCAACAACATATGGCAG+TGG - chr1_2:17711372-17711391 Msa0060150:intron 50.0%
CAACATATGGCAGTGGAAGG+TGG - chr1_2:17711379-17711398 Msa0060150:CDS 50.0%
AGTGGAAGGTGGGAGAGAAA+TGG - chr1_2:17711390-17711409 Msa0060150:CDS 50.0%
CTGCATAGGCTGAACACGAA+AGG + chr1_2:17711476-17711495 None:intergenic 50.0%
!! AGGATGATGGAATGGTGCCC+CGG + chr1_2:17710615-17710634 None:intergenic 55.0%
!! AGGATGATGGAATGGTGCCC+CGG + chr1_2:17710615-17710634 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 17709618 17711565 17709618 ID=Msa0060150;Name=Msa0060150
chr1_2 mRNA 17709618 17711565 17709618 ID=Msa0060150-mRNA-1;Parent=Msa0060150;Name=Msa0060150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.33|0.28|1|1|1|7|46|213
chr1_2 exon 17709618 17709810 17709618 ID=Msa0060150-mRNA-1:exon:6910;Parent=Msa0060150-mRNA-1
chr1_2 exon 17709920 17709967 17709920 ID=Msa0060150-mRNA-1:exon:6909;Parent=Msa0060150-mRNA-1
chr1_2 exon 17710078 17710107 17710078 ID=Msa0060150-mRNA-1:exon:6908;Parent=Msa0060150-mRNA-1
chr1_2 exon 17710760 17710859 17710760 ID=Msa0060150-mRNA-1:exon:6907;Parent=Msa0060150-mRNA-1
chr1_2 exon 17710975 17711036 17710975 ID=Msa0060150-mRNA-1:exon:6906;Parent=Msa0060150-mRNA-1
chr1_2 exon 17711187 17711253 17711187 ID=Msa0060150-mRNA-1:exon:6905;Parent=Msa0060150-mRNA-1
chr1_2 exon 17711378 17711565 17711378 ID=Msa0060150-mRNA-1:exon:6904;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17711378 17711565 17711378 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17711187 17711253 17711187 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17710975 17711036 17710975 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17710760 17710859 17710760 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17710078 17710107 17710078 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17709920 17709967 17709920 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 CDS 17709664 17709810 17709664 ID=Msa0060150-mRNA-1:cds;Parent=Msa0060150-mRNA-1
chr1_2 three_prime_UTR 17709618 17709663 17709618 ID=Msa0060150-mRNA-1:three_prime_utr;Parent=Msa0060150-mRNA-1
Gene Sequence

>Msa0060150

ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTTACATATTCAAAGAGAAAAAGTGGGATTTTGAAGAAAGCTAAAGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCTTTGCCCCTTCTGGAAAGATGCATGAATACATTAGCCCTTCTACCACGTTGATTGATATGCTGGAGAGATATCAAAAAGCATCTGGAAAGAGGCTTTGGGATGCAAAACATGAGGACCTAAGGAATGAAATCGAGAGACTCAAGAAGGAGAATGACGACATGGAAATTAAGCTCAGGCACTTGAAGGGAAAGGATATCAACACACTAAACTACAAGAAATTGATGAGCTTAGAGGATGTCTTAGAAAATGCTCTCCTCACTATCCGTGACAAACAGATGGAAGTATACCAGATGGTCAAGAGAAACGACAAGATCTTGGAGGAGGAGAATAGGGAACTTAATTTTATCCTCCAGCAGCAACAACATATGGCAGTGGAAGGTGGGAGAGAAATGGATTATAATGATGAATTTGATGAGAGTAGTGGAAGTGATTTCAATTCCCAGATGCCATTTTCCTTTCGTGTTCAGCCTATGCAGCTTCACTCACTACTTCAGCTTTAA
Protein sequence

>Msa0060150

MGRGKIEIKRIENSSNRQVTYSKRKSGILKKAKEINVLCDAQVSTIIFAPSGKMHEYISPSTTLIDMLERYQKASGKRLWDAKHEDLRNEIERLKKENDDMEIKLRHLKGKDINTLNYKKLMSLEDVLENALLTIRDKQMEVYQMVKRNDKILEEENRELNFILQQQQHMAVEGGREMDYNDEFDESSGSDFNSQMPFSFRVQPMQLHSLLQL*