Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060880 | AFK49669.1 | 92.222 | 90 | 7 | 0 | 39 | 128 | 1 | 90 | 2.02e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060880 | sp|Q9SLG0|NFYB1_ARATH | 37.879 | 132 | 74 | 3 | 17 | 144 | 1 | 128 | 8.38e-22 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060880 | I3TAX7 | 92.222 | 90 | 7 | 0 | 39 | 128 | 1 | 90 | 9.67e-55 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0060880 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060880 | MtrunA17_Chr1g0159291 | 92.222 | 90 | 7 | 0 | 39 | 128 | 1 | 90 | 1.86e-58 | 176 |
| Msa0060880 | MtrunA17_Chr3g0102351 | 41.414 | 99 | 57 | 1 | 45 | 143 | 32 | 129 | 4.00e-22 | 87.0 |
| Msa0060880 | MtrunA17_Chr1g0185911 | 40.404 | 99 | 51 | 1 | 45 | 135 | 34 | 132 | 3.48e-21 | 84.3 |
| Msa0060880 | MtrunA17_Chr7g0263601 | 37.692 | 130 | 77 | 4 | 17 | 144 | 1 | 128 | 3.58e-21 | 84.3 |
| Msa0060880 | MtrunA17_Chr8g0382931 | 40.594 | 101 | 59 | 1 | 45 | 145 | 33 | 132 | 6.01e-21 | 84.3 |
| Msa0060880 | MtrunA17_Chr1g0195851 | 42.857 | 84 | 48 | 0 | 45 | 128 | 41 | 124 | 7.38e-21 | 84.0 |
| Msa0060880 | MtrunA17_Chr5g0446491 | 44.048 | 84 | 47 | 0 | 45 | 128 | 28 | 111 | 9.71e-21 | 83.6 |
| Msa0060880 | MtrunA17_Chr4g0076381 | 39.785 | 93 | 55 | 1 | 45 | 137 | 63 | 154 | 1.04e-20 | 84.7 |
| Msa0060880 | MtrunA17_Chr2g0290491 | 42.697 | 89 | 50 | 1 | 45 | 133 | 22 | 109 | 1.83e-20 | 82.4 |
| Msa0060880 | MtrunA17_Chr1g0159271 | 46.237 | 93 | 49 | 1 | 54 | 145 | 1 | 93 | 2.55e-20 | 80.1 |
| Msa0060880 | MtrunA17_Chr4g0076321 | 42.045 | 88 | 51 | 0 | 41 | 128 | 20 | 107 | 2.65e-20 | 80.9 |
| Msa0060880 | MtrunA17_Chr1g0165041 | 42.857 | 84 | 48 | 0 | 45 | 128 | 11 | 94 | 3.65e-20 | 82.0 |
| Msa0060880 | MtrunA17_Chr8g0384451 | 42.353 | 85 | 49 | 0 | 45 | 129 | 45 | 129 | 1.48e-19 | 80.9 |
| Msa0060880 | MtrunA17_Chr1g0191981 | 36.905 | 84 | 53 | 0 | 45 | 128 | 9 | 92 | 2.98e-19 | 78.2 |
| Msa0060880 | MtrunA17_Chr2g0296321 | 39.286 | 84 | 51 | 0 | 45 | 128 | 71 | 154 | 2.48e-18 | 78.6 |
| Msa0060880 | MtrunA17_Chr4g0067091 | 39.286 | 84 | 51 | 0 | 45 | 128 | 27 | 110 | 3.95e-18 | 77.4 |
| Msa0060880 | MtrunA17_Chr1g0158951 | 37.778 | 90 | 42 | 1 | 70 | 145 | 19 | 108 | 4.05e-16 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060880 | AT2G38880.7 | 38.462 | 130 | 74 | 3 | 17 | 144 | 1 | 126 | 4.05e-23 | 88.6 |
| Msa0060880 | AT2G38880.3 | 37.879 | 132 | 74 | 3 | 17 | 144 | 1 | 128 | 8.12e-23 | 87.8 |
| Msa0060880 | AT2G38880.2 | 37.879 | 132 | 74 | 3 | 17 | 144 | 1 | 128 | 8.52e-23 | 87.8 |
| Msa0060880 | AT2G38880.1 | 37.879 | 132 | 74 | 3 | 17 | 144 | 1 | 128 | 8.52e-23 | 87.8 |
| Msa0060880 | AT2G38880.5 | 37.879 | 132 | 74 | 3 | 17 | 144 | 1 | 128 | 8.52e-23 | 87.8 |
| Msa0060880 | AT3G53340.5 | 42.308 | 104 | 57 | 1 | 45 | 145 | 34 | 137 | 7.80e-22 | 86.3 |
| Msa0060880 | AT3G53340.1 | 42.308 | 104 | 57 | 1 | 45 | 145 | 34 | 137 | 7.80e-22 | 86.3 |
| Msa0060880 | AT2G37060.2 | 41.121 | 107 | 60 | 1 | 45 | 148 | 35 | 141 | 2.10e-21 | 85.1 |
| Msa0060880 | AT2G37060.3 | 41.121 | 107 | 60 | 1 | 45 | 148 | 35 | 141 | 2.10e-21 | 85.1 |
| Msa0060880 | AT2G37060.1 | 41.121 | 107 | 60 | 1 | 45 | 148 | 35 | 141 | 2.10e-21 | 85.1 |
| Msa0060880 | AT4G14540.1 | 39.216 | 102 | 61 | 1 | 45 | 146 | 26 | 126 | 3.90e-21 | 84.3 |
| Msa0060880 | AT2G38880.4 | 44.048 | 84 | 47 | 0 | 45 | 128 | 26 | 109 | 4.10e-21 | 82.8 |
| Msa0060880 | AT5G47640.1 | 45.238 | 84 | 46 | 0 | 45 | 128 | 32 | 115 | 7.97e-21 | 84.3 |
| Msa0060880 | AT2G38880.11 | 38.938 | 113 | 64 | 2 | 17 | 128 | 1 | 109 | 1.10e-20 | 83.2 |
| Msa0060880 | AT2G38880.8 | 38.938 | 113 | 64 | 2 | 17 | 128 | 1 | 109 | 1.10e-20 | 83.2 |
| Msa0060880 | AT2G38880.9 | 44.048 | 84 | 47 | 0 | 45 | 128 | 26 | 109 | 2.11e-20 | 82.0 |
| Msa0060880 | AT2G38880.10 | 44.048 | 84 | 47 | 0 | 45 | 128 | 26 | 109 | 2.11e-20 | 82.0 |
| Msa0060880 | AT2G38880.6 | 44.048 | 84 | 47 | 0 | 45 | 128 | 26 | 109 | 2.11e-20 | 82.0 |
| Msa0060880 | AT2G47810.1 | 41.667 | 84 | 49 | 0 | 45 | 128 | 56 | 139 | 6.07e-20 | 81.3 |
| Msa0060880 | AT3G53340.4 | 45.238 | 84 | 46 | 0 | 45 | 128 | 34 | 117 | 6.45e-20 | 80.1 |
| Msa0060880 | AT5G47670.2 | 36.842 | 95 | 60 | 0 | 45 | 139 | 34 | 128 | 5.89e-19 | 79.7 |
| Msa0060880 | AT3G53340.3 | 43.478 | 92 | 51 | 1 | 45 | 136 | 34 | 124 | 6.71e-19 | 78.2 |
| Msa0060880 | AT3G53340.2 | 43.478 | 92 | 51 | 1 | 45 | 136 | 34 | 124 | 6.71e-19 | 78.2 |
| Msa0060880 | AT5G47670.1 | 36.842 | 95 | 60 | 0 | 45 | 139 | 63 | 157 | 1.16e-18 | 79.3 |
| Msa0060880 | AT5G47670.3 | 36.842 | 95 | 60 | 0 | 45 | 139 | 63 | 157 | 1.16e-18 | 79.3 |
| Msa0060880 | AT2G13570.1 | 42.353 | 85 | 49 | 0 | 45 | 129 | 41 | 125 | 2.46e-18 | 78.2 |
| Msa0060880 | AT1G09030.1 | 33.663 | 101 | 60 | 1 | 45 | 138 | 8 | 108 | 2.93e-18 | 76.3 |
| Msa0060880 | AT1G21970.1 | 37.755 | 98 | 59 | 1 | 33 | 128 | 50 | 147 | 4.30e-18 | 78.2 |
Find 41 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTTCTACATTGGCTTTC+TGG | 0.102414 | 1_2:+18845776 | None:intergenic |
| ATTGTGTGTGTCTAAATTTA+TGG | 0.291429 | 1_2:-18845821 | Msa0060880:CDS |
| TTTCTGCTGATGATTTACTA+TGG | 0.320933 | 1_2:-18845744 | Msa0060880:CDS |
| CGCACTTCCTCGCCCATTGT+TGG | 0.335463 | 1_2:+18845931 | None:intergenic |
| GAGGAATTTGTTAGGTCTCT+TGG | 0.362755 | 1_2:-18845700 | Msa0060880:CDS |
| ATTTACTATGGACGATGAAT+AGG | 0.363355 | 1_2:-18845732 | Msa0060880:CDS |
| TTAACTTAGGTCATCATCAT+TGG | 0.396111 | 1_2:+18845615 | None:intergenic |
| TGGGCTTTGAGGAATTTGTT+AGG | 0.401864 | 1_2:-18845708 | Msa0060880:CDS |
| AGGAATTTGTTAGGTCTCTT+GGG | 0.404606 | 1_2:-18845699 | Msa0060880:CDS |
| GGAGTTGAATGTTGGTTCTC+AGG | 0.413844 | 1_2:+18845952 | None:intergenic |
| GATGAATAGGTTGGGCTTTG+AGG | 0.427694 | 1_2:-18845719 | Msa0060880:CDS |
| CTATGGACGATGAATAGGTT+GGG | 0.452990 | 1_2:-18845727 | Msa0060880:CDS |
| TTCCTTGTGTCGAATTGCTA+TGG | 0.461454 | 1_2:+18846378 | None:intergenic |
| CCAACGTCAATGTTTGTTGT+TGG | 0.462839 | 1_2:+18845976 | None:intergenic |
| GACTCTTGTCACATGATTGA+TGG | 0.464195 | 1_2:+18845903 | None:intergenic |
| CCAACATTCAACTCCAACAA+TGG | 0.484164 | 1_2:-18845944 | Msa0060880:CDS |
| ACGTCAATGTTTGTTGTTGG+TGG | 0.488695 | 1_2:+18845979 | None:intergenic |
| AACTATCGCAACCACATGGA+TGG | 0.490022 | 1_2:-18845664 | Msa0060880:CDS |
| CAACATTCAACTCCAACAAT+GGG | 0.502283 | 1_2:-18845943 | Msa0060880:CDS |
| CGCAACCACATGGATGGGTC+AGG | 0.508099 | 1_2:-18845658 | Msa0060880:CDS |
| CCATTGTTGGAGTTGAATGT+TGG | 0.510977 | 1_2:+18845944 | None:intergenic |
| CATTAACTCCTTAGCATCAC+CGG | 0.525471 | 1_2:+18845846 | None:intergenic |
| ACTATGGACGATGAATAGGT+TGG | 0.532041 | 1_2:-18845728 | Msa0060880:CDS |
| TCACCGGTGATTATTGTGTC+CGG | 0.543765 | 1_2:+18845862 | None:intergenic |
| AATCATTTGATGTTCTACAT+TGG | 0.545949 | 1_2:+18845768 | None:intergenic |
| AATAATCACCGGTGATGCTA+AGG | 0.556556 | 1_2:-18845854 | Msa0060880:CDS |
| AATTCGACACAAGGAAACTC+TGG | 0.570594 | 1_2:-18846371 | Msa0060880:intron |
| CATGCAGAGTGTTCTTCCAC+CGG | 0.588890 | 1_2:-18845881 | Msa0060880:CDS |
| ACTCTTGTCACATGATTGAT+GGG | 0.597608 | 1_2:+18845904 | None:intergenic |
| TTCAACTCCAACAATGGGCG+AGG | 0.597648 | 1_2:-18845938 | Msa0060880:CDS |
| ACTATCGCAACCACATGGAT+GGG | 0.604393 | 1_2:-18845663 | Msa0060880:CDS |
| ATGGATGGGTCAGGTACTAG+TGG | 0.605939 | 1_2:-18845649 | Msa0060880:CDS |
| GAATTGCTATGGTTAGCAGA+GGG | 0.608648 | 1_2:+18846389 | None:intergenic |
| CCGGTGATTATTGTGTCCGG+TGG | 0.615417 | 1_2:+18845865 | None:intergenic |
| AACCATAGCAATTCGACACA+AGG | 0.618498 | 1_2:-18846380 | Msa0060880:CDS |
| CGAATTGCTATGGTTAGCAG+AGG | 0.624127 | 1_2:+18846388 | None:intergenic |
| CCACCGGACACAATAATCAC+CGG | 0.624454 | 1_2:-18845865 | Msa0060880:CDS |
| CCAACAACAAACATTGACGT+TGG | 0.638388 | 1_2:-18845976 | Msa0060880:CDS |
| AATTGCTATGGTTAGCAGAG+GGG | 0.653798 | 1_2:+18846390 | None:intergenic |
| TATGGACATAGTCACAAGTG+AGG | 0.668100 | 1_2:-18845803 | Msa0060880:CDS |
| TAGTACCTGACCCATCCATG+TGG | 0.736156 | 1_2:+18845653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTCTTTTTTTTTTTC+AGG | + | chr1_2:18845916-18845935 | None:intergenic | 10.0% |
| !!! | ATTAATTCTTTTTTTTTTTC+AGG | + | chr1_2:18845916-18845935 | None:intergenic | 10.0% |
| !! | AATATATACAAATGAAAAAC+CGG | + | chr1_2:18845730-18845749 | None:intergenic | 15.0% |
| !! | ATCTTCAAAATTAAAAGATT+TGG | + | chr1_2:18845950-18845969 | None:intergenic | 15.0% |
| !! | AATATATACAAATGAAAAAC+CGG | + | chr1_2:18845730-18845749 | None:intergenic | 15.0% |
| !! | ATCTTCAAAATTAAAAGATT+TGG | + | chr1_2:18845950-18845969 | None:intergenic | 15.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_2:18845813-18845832 | Msa0060880:CDS | 20.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_2:18845813-18845832 | Msa0060880:CDS | 20.0% |
| !! | ACTCAATCTTTTACAAAGTA+GGG | + | chr1_2:18845704-18845723 | None:intergenic | 25.0% |
| !! | AACTCAATCTTTTACAAAGT+AGG | + | chr1_2:18845705-18845724 | None:intergenic | 25.0% |
| ! | ATTGTGTGTGTCTAAATTTA+TGG | - | chr1_2:18846191-18846210 | Msa0060880:intron | 25.0% |
| ! | AATCATTTGATGTTCTACAT+TGG | + | chr1_2:18846247-18846266 | None:intergenic | 25.0% |
| !! | ACTCAATCTTTTACAAAGTA+GGG | + | chr1_2:18845704-18845723 | None:intergenic | 25.0% |
| !! | AACTCAATCTTTTACAAAGT+AGG | + | chr1_2:18845705-18845724 | None:intergenic | 25.0% |
| ! | ATTGTGTGTGTCTAAATTTA+TGG | - | chr1_2:18846191-18846210 | Msa0060880:intron | 25.0% |
| ! | AATCATTTGATGTTCTACAT+TGG | + | chr1_2:18846247-18846266 | None:intergenic | 25.0% |
| TTGTAAAAGATTGAGTTTGC+CGG | - | chr1_2:18845708-18845727 | Msa0060880:CDS | 30.0% | |
| !! | ATGTTTTTGACAGAGATGAA+AGG | + | chr1_2:18845996-18846015 | None:intergenic | 30.0% |
| TTTCTGCTGATGATTTACTA+TGG | - | chr1_2:18846268-18846287 | Msa0060880:intron | 30.0% | |
| ATTTACTATGGACGATGAAT+AGG | - | chr1_2:18846280-18846299 | Msa0060880:intron | 30.0% | |
| TTAACTTAGGTCATCATCAT+TGG | + | chr1_2:18846400-18846419 | None:intergenic | 30.0% | |
| TTGTAAAAGATTGAGTTTGC+CGG | - | chr1_2:18845708-18845727 | Msa0060880:CDS | 30.0% | |
| !! | ATGTTTTTGACAGAGATGAA+AGG | + | chr1_2:18845996-18846015 | None:intergenic | 30.0% |
| TTTCTGCTGATGATTTACTA+TGG | - | chr1_2:18846268-18846287 | Msa0060880:intron | 30.0% | |
| ATTTACTATGGACGATGAAT+AGG | - | chr1_2:18846280-18846299 | Msa0060880:intron | 30.0% | |
| TTAACTTAGGTCATCATCAT+TGG | + | chr1_2:18846400-18846419 | None:intergenic | 30.0% | |
| CAACATTCAACTCCAACAAT+GGG | - | chr1_2:18846069-18846088 | Msa0060880:intron | 35.0% | |
| ACTCTTGTCACATGATTGAT+GGG | + | chr1_2:18846111-18846130 | None:intergenic | 35.0% | |
| !! | AGGAATTTGTTAGGTCTCTT+GGG | - | chr1_2:18846313-18846332 | Msa0060880:intron | 35.0% |
| CAACATTCAACTCCAACAAT+GGG | - | chr1_2:18846069-18846088 | Msa0060880:intron | 35.0% | |
| ACTCTTGTCACATGATTGAT+GGG | + | chr1_2:18846111-18846130 | None:intergenic | 35.0% | |
| !! | AGGAATTTGTTAGGTCTCTT+GGG | - | chr1_2:18846313-18846332 | Msa0060880:intron | 35.0% |
| AATTGCTATGGTTAGCAGAG+GGG | + | chr1_2:18845625-18845644 | None:intergenic | 40.0% | |
| GAATTGCTATGGTTAGCAGA+GGG | + | chr1_2:18845626-18845645 | None:intergenic | 40.0% | |
| AACCATAGCAATTCGACACA+AGG | - | chr1_2:18845632-18845651 | Msa0060880:CDS | 40.0% | |
| TTCCTTGTGTCGAATTGCTA+TGG | + | chr1_2:18845637-18845656 | None:intergenic | 40.0% | |
| AATTCGACACAAGGAAACTC+TGG | - | chr1_2:18845641-18845660 | Msa0060880:CDS | 40.0% | |
| !! | ACGTCAATGTTTGTTGTTGG+TGG | + | chr1_2:18846036-18846055 | None:intergenic | 40.0% |
| !! | CCAACGTCAATGTTTGTTGT+TGG | + | chr1_2:18846039-18846058 | None:intergenic | 40.0% |
| CCAACAACAAACATTGACGT+TGG | - | chr1_2:18846036-18846055 | Msa0060880:intron | 40.0% | |
| CCATTGTTGGAGTTGAATGT+TGG | + | chr1_2:18846071-18846090 | None:intergenic | 40.0% | |
| CCAACATTCAACTCCAACAA+TGG | - | chr1_2:18846068-18846087 | Msa0060880:intron | 40.0% | |
| GACTCTTGTCACATGATTGA+TGG | + | chr1_2:18846112-18846131 | None:intergenic | 40.0% | |
| AATAATCACCGGTGATGCTA+AGG | - | chr1_2:18846158-18846177 | Msa0060880:intron | 40.0% | |
| CATTAACTCCTTAGCATCAC+CGG | + | chr1_2:18846169-18846188 | None:intergenic | 40.0% | |
| TATGGACATAGTCACAAGTG+AGG | - | chr1_2:18846209-18846228 | Msa0060880:intron | 40.0% | |
| !! | GATGTTCTACATTGGCTTTC+TGG | + | chr1_2:18846239-18846258 | None:intergenic | 40.0% |
| ACTATGGACGATGAATAGGT+TGG | - | chr1_2:18846284-18846303 | Msa0060880:intron | 40.0% | |
| CTATGGACGATGAATAGGTT+GGG | - | chr1_2:18846285-18846304 | Msa0060880:intron | 40.0% | |
| !! | TGGGCTTTGAGGAATTTGTT+AGG | - | chr1_2:18846304-18846323 | Msa0060880:intron | 40.0% |
| !! | GAGGAATTTGTTAGGTCTCT+TGG | - | chr1_2:18846312-18846331 | Msa0060880:intron | 40.0% |
| ! | TGTGGTTGCGATAGTTTTTG+AGG | + | chr1_2:18846344-18846363 | None:intergenic | 40.0% |
| CAAAAACTATCGCAACCACA+TGG | - | chr1_2:18846344-18846363 | Msa0060880:intron | 40.0% | |
| AATTGCTATGGTTAGCAGAG+GGG | + | chr1_2:18845625-18845644 | None:intergenic | 40.0% | |
| GAATTGCTATGGTTAGCAGA+GGG | + | chr1_2:18845626-18845645 | None:intergenic | 40.0% | |
| AACCATAGCAATTCGACACA+AGG | - | chr1_2:18845632-18845651 | Msa0060880:CDS | 40.0% | |
| TTCCTTGTGTCGAATTGCTA+TGG | + | chr1_2:18845637-18845656 | None:intergenic | 40.0% | |
| AATTCGACACAAGGAAACTC+TGG | - | chr1_2:18845641-18845660 | Msa0060880:CDS | 40.0% | |
| !! | ACGTCAATGTTTGTTGTTGG+TGG | + | chr1_2:18846036-18846055 | None:intergenic | 40.0% |
| !! | CCAACGTCAATGTTTGTTGT+TGG | + | chr1_2:18846039-18846058 | None:intergenic | 40.0% |
| CCAACAACAAACATTGACGT+TGG | - | chr1_2:18846036-18846055 | Msa0060880:intron | 40.0% | |
| CCATTGTTGGAGTTGAATGT+TGG | + | chr1_2:18846071-18846090 | None:intergenic | 40.0% | |
| CCAACATTCAACTCCAACAA+TGG | - | chr1_2:18846068-18846087 | Msa0060880:intron | 40.0% | |
| GACTCTTGTCACATGATTGA+TGG | + | chr1_2:18846112-18846131 | None:intergenic | 40.0% | |
| AATAATCACCGGTGATGCTA+AGG | - | chr1_2:18846158-18846177 | Msa0060880:intron | 40.0% | |
| CATTAACTCCTTAGCATCAC+CGG | + | chr1_2:18846169-18846188 | None:intergenic | 40.0% | |
| TATGGACATAGTCACAAGTG+AGG | - | chr1_2:18846209-18846228 | Msa0060880:intron | 40.0% | |
| !! | GATGTTCTACATTGGCTTTC+TGG | + | chr1_2:18846239-18846258 | None:intergenic | 40.0% |
| ACTATGGACGATGAATAGGT+TGG | - | chr1_2:18846284-18846303 | Msa0060880:intron | 40.0% | |
| CTATGGACGATGAATAGGTT+GGG | - | chr1_2:18846285-18846304 | Msa0060880:intron | 40.0% | |
| !! | TGGGCTTTGAGGAATTTGTT+AGG | - | chr1_2:18846304-18846323 | Msa0060880:intron | 40.0% |
| !! | GAGGAATTTGTTAGGTCTCT+TGG | - | chr1_2:18846312-18846331 | Msa0060880:intron | 40.0% |
| ! | TGTGGTTGCGATAGTTTTTG+AGG | + | chr1_2:18846344-18846363 | None:intergenic | 40.0% |
| CAAAAACTATCGCAACCACA+TGG | - | chr1_2:18846344-18846363 | Msa0060880:intron | 40.0% | |
| CGAATTGCTATGGTTAGCAG+AGG | + | chr1_2:18845627-18845646 | None:intergenic | 45.0% | |
| !! | GGAGTTGAATGTTGGTTCTC+AGG | + | chr1_2:18846063-18846082 | None:intergenic | 45.0% |
| TCACCGGTGATTATTGTGTC+CGG | + | chr1_2:18846153-18846172 | None:intergenic | 45.0% | |
| ! | GATGAATAGGTTGGGCTTTG+AGG | - | chr1_2:18846293-18846312 | Msa0060880:intron | 45.0% |
| AACTATCGCAACCACATGGA+TGG | - | chr1_2:18846348-18846367 | Msa0060880:intron | 45.0% | |
| ACTATCGCAACCACATGGAT+GGG | - | chr1_2:18846349-18846368 | Msa0060880:intron | 45.0% | |
| CGAATTGCTATGGTTAGCAG+AGG | + | chr1_2:18845627-18845646 | None:intergenic | 45.0% | |
| !! | GGAGTTGAATGTTGGTTCTC+AGG | + | chr1_2:18846063-18846082 | None:intergenic | 45.0% |
| TCACCGGTGATTATTGTGTC+CGG | + | chr1_2:18846153-18846172 | None:intergenic | 45.0% | |
| ! | GATGAATAGGTTGGGCTTTG+AGG | - | chr1_2:18846293-18846312 | Msa0060880:intron | 45.0% |
| AACTATCGCAACCACATGGA+TGG | - | chr1_2:18846348-18846367 | Msa0060880:intron | 45.0% | |
| ACTATCGCAACCACATGGAT+GGG | - | chr1_2:18846349-18846368 | Msa0060880:intron | 45.0% | |
| TTCAACTCCAACAATGGGCG+AGG | - | chr1_2:18846074-18846093 | Msa0060880:intron | 50.0% | |
| ! | CATGCAGAGTGTTCTTCCAC+CGG | - | chr1_2:18846131-18846150 | Msa0060880:intron | 50.0% |
| CCACCGGACACAATAATCAC+CGG | - | chr1_2:18846147-18846166 | Msa0060880:intron | 50.0% | |
| TAGTACCTGACCCATCCATG+TGG | + | chr1_2:18846362-18846381 | None:intergenic | 50.0% | |
| ATGGATGGGTCAGGTACTAG+TGG | - | chr1_2:18846363-18846382 | Msa0060880:intron | 50.0% | |
| TTCAACTCCAACAATGGGCG+AGG | - | chr1_2:18846074-18846093 | Msa0060880:intron | 50.0% | |
| ! | CATGCAGAGTGTTCTTCCAC+CGG | - | chr1_2:18846131-18846150 | Msa0060880:intron | 50.0% |
| CCACCGGACACAATAATCAC+CGG | - | chr1_2:18846147-18846166 | Msa0060880:intron | 50.0% | |
| TAGTACCTGACCCATCCATG+TGG | + | chr1_2:18846362-18846381 | None:intergenic | 50.0% | |
| ATGGATGGGTCAGGTACTAG+TGG | - | chr1_2:18846363-18846382 | Msa0060880:intron | 50.0% | |
| CCGGTGATTATTGTGTCCGG+TGG | + | chr1_2:18846150-18846169 | None:intergenic | 55.0% | |
| CCGGTGATTATTGTGTCCGG+TGG | + | chr1_2:18846150-18846169 | None:intergenic | 55.0% | |
| CGCACTTCCTCGCCCATTGT+TGG | + | chr1_2:18846084-18846103 | None:intergenic | 60.0% | |
| CGCAACCACATGGATGGGTC+AGG | - | chr1_2:18846354-18846373 | Msa0060880:intron | 60.0% | |
| CGCACTTCCTCGCCCATTGT+TGG | + | chr1_2:18846084-18846103 | None:intergenic | 60.0% | |
| CGCAACCACATGGATGGGTC+AGG | - | chr1_2:18846354-18846373 | Msa0060880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18845615 | 18846419 | 18845615 | ID=Msa0060880;Name=Msa0060880 |
| chr1_2 | mRNA | 18845615 | 18846419 | 18845615 | ID=Msa0060880-mRNA-1;Parent=Msa0060880;Name=Msa0060880-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.5|1|1|2|0|148 |
| chr1_2 | exon | 18846372 | 18846419 | 18846372 | ID=Msa0060880-mRNA-1:exon:7280;Parent=Msa0060880-mRNA-1 |
| chr1_2 | exon | 18845615 | 18846013 | 18845615 | ID=Msa0060880-mRNA-1:exon:7279;Parent=Msa0060880-mRNA-1 |
| chr1_2 | CDS | 18846372 | 18846419 | 18846372 | ID=Msa0060880-mRNA-1:cds;Parent=Msa0060880-mRNA-1 |
| chr1_2 | CDS | 18845615 | 18846013 | 18845615 | ID=Msa0060880-mRNA-1:cds;Parent=Msa0060880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
