Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060890 | XP_013466407.1 | 91.860 | 172 | 14 | 0 | 1 | 172 | 1 | 172 | 5.53e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060890 | sp|O23310|NFYB3_ARATH | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 9.67e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060890 | A0A072VGA7 | 91.860 | 172 | 14 | 0 | 1 | 172 | 1 | 172 | 2.64e-101 | 298 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0060890 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060890 | MtrunA17_Chr1g0159271 | 95.327 | 107 | 5 | 0 | 66 | 172 | 1 | 107 | 1.25e-61 | 186 |
| Msa0060890 | MtrunA17_Chr1g0185911 | 50.000 | 120 | 50 | 2 | 57 | 172 | 34 | 147 | 6.88e-35 | 120 |
| Msa0060890 | MtrunA17_Chr1g0165041 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 2.09e-34 | 119 |
| Msa0060890 | MtrunA17_Chr8g0382931 | 47.541 | 122 | 58 | 1 | 32 | 153 | 14 | 129 | 2.28e-34 | 120 |
| Msa0060890 | MtrunA17_Chr7g0263601 | 47.788 | 113 | 48 | 1 | 57 | 169 | 31 | 132 | 1.16e-33 | 117 |
| Msa0060890 | MtrunA17_Chr2g0290491 | 56.044 | 91 | 40 | 0 | 57 | 147 | 22 | 112 | 1.50e-32 | 114 |
| Msa0060890 | MtrunA17_Chr5g0446491 | 46.094 | 128 | 58 | 2 | 39 | 159 | 3 | 126 | 4.07e-32 | 113 |
| Msa0060890 | MtrunA17_Chr3g0102351 | 56.180 | 89 | 39 | 0 | 57 | 145 | 32 | 120 | 1.19e-31 | 112 |
| Msa0060890 | MtrunA17_Chr4g0076381 | 40.441 | 136 | 80 | 1 | 9 | 144 | 16 | 150 | 5.61e-31 | 112 |
| Msa0060890 | MtrunA17_Chr4g0076321 | 54.945 | 91 | 41 | 0 | 53 | 143 | 20 | 110 | 1.68e-30 | 108 |
| Msa0060890 | MtrunA17_Chr1g0195851 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 2.80e-30 | 109 |
| Msa0060890 | MtrunA17_Chr8g0384451 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 7.46e-30 | 108 |
| Msa0060890 | MtrunA17_Chr1g0158951 | 56.098 | 82 | 36 | 0 | 87 | 168 | 24 | 105 | 2.07e-27 | 99.4 |
| Msa0060890 | MtrunA17_Chr4g0067091 | 43.810 | 105 | 59 | 0 | 53 | 157 | 23 | 127 | 4.21e-27 | 101 |
| Msa0060890 | MtrunA17_Chr2g0296321 | 47.826 | 92 | 48 | 0 | 53 | 144 | 67 | 158 | 1.82e-26 | 100 |
| Msa0060890 | MtrunA17_Chr1g0159291 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 2.99e-22 | 85.5 |
| Msa0060890 | MtrunA17_Chr1g0191981 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 3.86e-22 | 86.3 |
| Msa0060890 | MtrunA17_Chr5g0446601 | 33.721 | 86 | 57 | 0 | 56 | 141 | 28 | 113 | 5.62e-14 | 66.6 |
| Msa0060890 | MtrunA17_Chr2g0307551 | 26.415 | 106 | 78 | 0 | 42 | 147 | 1 | 106 | 1.38e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060890 | AT4G14540.1 | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 9.83e-35 | 120 |
| Msa0060890 | AT2G38880.7 | 50.893 | 112 | 51 | 2 | 57 | 168 | 26 | 133 | 2.26e-33 | 115 |
| Msa0060890 | AT3G53340.5 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 3.14e-33 | 116 |
| Msa0060890 | AT3G53340.1 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 3.14e-33 | 116 |
| Msa0060890 | AT2G38880.3 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 4.82e-33 | 115 |
| Msa0060890 | AT2G38880.2 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0060890 | AT2G38880.1 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0060890 | AT2G38880.5 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0060890 | AT2G37060.2 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0060890 | AT2G37060.3 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0060890 | AT2G37060.1 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0060890 | AT5G47640.1 | 55.435 | 92 | 41 | 0 | 57 | 148 | 32 | 123 | 1.12e-32 | 115 |
| Msa0060890 | AT1G21970.1 | 41.176 | 153 | 77 | 3 | 1 | 143 | 1 | 150 | 8.50e-32 | 114 |
| Msa0060890 | AT5G47670.2 | 52.041 | 98 | 46 | 1 | 57 | 154 | 34 | 130 | 9.51e-32 | 113 |
| Msa0060890 | AT5G47670.1 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.94e-31 | 113 |
| Msa0060890 | AT5G47670.3 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.94e-31 | 113 |
| Msa0060890 | AT3G53340.4 | 45.045 | 111 | 49 | 1 | 30 | 140 | 19 | 117 | 6.62e-31 | 108 |
| Msa0060890 | AT2G38880.4 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 9.08e-31 | 108 |
| Msa0060890 | AT2G13570.1 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 1.08e-30 | 111 |
| Msa0060890 | AT3G53340.3 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.29e-30 | 108 |
| Msa0060890 | AT3G53340.2 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.29e-30 | 108 |
| Msa0060890 | AT2G38880.11 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.22e-30 | 108 |
| Msa0060890 | AT2G38880.8 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.22e-30 | 108 |
| Msa0060890 | AT2G38880.9 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0060890 | AT2G38880.10 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0060890 | AT2G38880.6 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0060890 | AT2G47810.1 | 51.190 | 84 | 41 | 0 | 57 | 140 | 56 | 139 | 1.70e-27 | 101 |
| Msa0060890 | AT1G09030.1 | 43.119 | 109 | 60 | 1 | 51 | 159 | 2 | 108 | 1.22e-26 | 98.6 |
| Msa0060890 | AT5G08190.1 | 27.358 | 106 | 77 | 0 | 46 | 151 | 5 | 110 | 1.04e-11 | 60.5 |
| Msa0060890 | AT5G08190.2 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.20e-11 | 60.1 |
Find 47 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAATTTCATATCAATAT+TGG | 0.244898 | 1_2:+18855305 | None:intergenic |
| GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1_2:+18855638 | None:intergenic |
| CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1_2:+18855407 | None:intergenic |
| TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1_2:-18855483 | Msa0060890:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1_2:-18855458 | Msa0060890:CDS |
| ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1_2:-18855466 | Msa0060890:CDS |
| ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1_2:-18855560 | Msa0060890:CDS |
| AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1_2:-18855349 | Msa0060890:CDS |
| CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1_2:+18855670 | None:intergenic |
| ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1_2:+18855576 | None:intergenic |
| ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1_2:-18855346 | Msa0060890:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1_2:-18855499 | Msa0060890:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1_2:-18855465 | Msa0060890:CDS |
| GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1_2:-18855766 | Msa0060890:intron |
| TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1_2:-18855356 | Msa0060890:CDS |
| AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1_2:+18855673 | None:intergenic |
| GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1_2:-18855355 | Msa0060890:CDS |
| ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1_2:-18855765 | Msa0060890:intron |
| GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1_2:+18855642 | None:intergenic |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1_2:-18855448 | Msa0060890:CDS |
| TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1_2:-18855476 | Msa0060890:CDS |
| ATGGACTCCCTGCTTGCAAA+CGG | 0.525534 | 1_2:+18855758 | None:intergenic |
| GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1_2:-18855361 | Msa0060890:CDS |
| GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1_2:-18855334 | Msa0060890:CDS |
| CGTTCAGCACAATCAAGCTC+TGG | 0.543458 | 1_2:-18856983 | Msa0060890:intron |
| TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1_2:-18855482 | Msa0060890:CDS |
| GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1_2:-18855328 | Msa0060890:CDS |
| TGAACGGTTGTTGTTAAATG+AGG | 0.552826 | 1_2:+18857000 | None:intergenic |
| TCCTAAAGTAGCATGGAGCA+TGG | 0.582752 | 1_2:-18857028 | None:intergenic |
| AGTGGCACGTCAACTGCTCG+TGG | 0.583180 | 1_2:-18855376 | Msa0060890:CDS |
| CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1_2:-18855360 | Msa0060890:CDS |
| TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1_2:-18855677 | Msa0060890:CDS |
| AACCATGAGGCTCAATTCAG+TGG | 0.593599 | 1_2:-18855394 | Msa0060890:CDS |
| ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1_2:+18855643 | None:intergenic |
| ATGAAAACAATGAATCTCCA+AGG | 0.596844 | 1_2:-18855735 | Msa0060890:CDS |
| TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1_2:-18855559 | Msa0060890:CDS |
| ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1_2:-18855471 | Msa0060890:CDS |
| AACTGCTCGTGGATTCAACA+TGG | 0.604751 | 1_2:-18855365 | Msa0060890:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1_2:+18855459 | None:intergenic |
| GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1_2:-18855475 | Msa0060890:CDS |
| GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1_2:+18855528 | None:intergenic |
| CAGAGCTTGATTGTGCTGAA+CGG | 0.629066 | 1_2:+18856984 | None:intergenic |
| TGCCACTGAATTGAGCCTCA+TGG | 0.650553 | 1_2:+18855392 | None:intergenic |
| GAACGGTTGTTGTTAAATGA+GGG | 0.692444 | 1_2:+18857001 | None:intergenic |
| GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1_2:-18855636 | Msa0060890:CDS |
| CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1_2:-18855407 | Msa0060890:CDS |
| CATGGGCATCATCACCACTG+AGG | 0.758004 | 1_2:-18855542 | Msa0060890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATAAAATCAATTAA+GGG | + | chr1_2:18855617-18855636 | None:intergenic | 10.0% |
| !!! | TAATGAAATTTTTATTTAAG+GGG | - | chr1_2:18855763-18855782 | Msa0060890:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | - | chr1_2:18856029-18856048 | Msa0060890:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | - | chr1_2:18856030-18856049 | Msa0060890:intron | 10.0% |
| !! | AATCTAATAAAATCAATTAA+GGG | + | chr1_2:18855617-18855636 | None:intergenic | 10.0% |
| !!! | TAATGAAATTTTTATTTAAG+GGG | - | chr1_2:18855763-18855782 | Msa0060890:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | - | chr1_2:18856029-18856048 | Msa0060890:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | - | chr1_2:18856030-18856049 | Msa0060890:intron | 10.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | + | chr1_2:18855616-18855635 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | + | chr1_2:18855618-18855637 | None:intergenic | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | - | chr1_2:18855866-18855885 | Msa0060890:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | - | chr1_2:18855867-18855886 | Msa0060890:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | + | chr1_2:18856359-18856378 | None:intergenic | 15.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | + | chr1_2:18855616-18855635 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | + | chr1_2:18855618-18855637 | None:intergenic | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | - | chr1_2:18855866-18855885 | Msa0060890:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | - | chr1_2:18855867-18855886 | Msa0060890:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | + | chr1_2:18856359-18856378 | None:intergenic | 15.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | + | chr1_2:18855440-18855459 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | + | chr1_2:18855523-18855542 | None:intergenic | 20.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | + | chr1_2:18855615-18855634 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | - | chr1_2:18855621-18855640 | Msa0060890:CDS | 20.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | + | chr1_2:18855440-18855459 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | + | chr1_2:18855523-18855542 | None:intergenic | 20.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | + | chr1_2:18855615-18855634 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | - | chr1_2:18855621-18855640 | Msa0060890:CDS | 20.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | + | chr1_2:18855910-18855929 | None:intergenic | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | - | chr1_2:18856120-18856139 | Msa0060890:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | + | chr1_2:18856169-18856188 | None:intergenic | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | + | chr1_2:18856170-18856189 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | - | chr1_2:18856195-18856214 | Msa0060890:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | + | chr1_2:18856356-18856375 | None:intergenic | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | - | chr1_2:18856432-18856451 | Msa0060890:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | + | chr1_2:18856626-18856645 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | - | chr1_2:18856851-18856870 | Msa0060890:intron | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | - | chr1_2:18856852-18856871 | Msa0060890:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | + | chr1_2:18855910-18855929 | None:intergenic | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | - | chr1_2:18856120-18856139 | Msa0060890:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | + | chr1_2:18856169-18856188 | None:intergenic | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | + | chr1_2:18856170-18856189 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | - | chr1_2:18856195-18856214 | Msa0060890:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | + | chr1_2:18856356-18856375 | None:intergenic | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | - | chr1_2:18856432-18856451 | Msa0060890:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | + | chr1_2:18856626-18856645 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | - | chr1_2:18856851-18856870 | Msa0060890:intron | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | - | chr1_2:18856852-18856871 | Msa0060890:intron | 25.0% |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | - | chr1_2:18855724-18855743 | Msa0060890:CDS | 30.0% |
| GGGGATGACAAAAAAAAATA+TGG | - | chr1_2:18855782-18855801 | Msa0060890:intron | 30.0% | |
| ! | TGTCTGAGGGTTATAAATTT+TGG | - | chr1_2:18855880-18855899 | Msa0060890:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | - | chr1_2:18855881-18855900 | Msa0060890:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | - | chr1_2:18855882-18855901 | Msa0060890:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | - | chr1_2:18856123-18856142 | Msa0060890:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | - | chr1_2:18856124-18856143 | Msa0060890:intron | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | + | chr1_2:18856168-18856187 | None:intergenic | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | - | chr1_2:18856401-18856420 | Msa0060890:intron | 30.0% | |
| ! | GGAGATTCATTGTTTTCATA+TGG | + | chr1_2:18856598-18856617 | None:intergenic | 30.0% |
| ATGAAAACAATGAATCTCCA+AGG | - | chr1_2:18856599-18856618 | Msa0060890:intron | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | + | chr1_2:18856694-18856713 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | + | chr1_2:18856699-18856718 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | - | chr1_2:18856698-18856717 | Msa0060890:intron | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | - | chr1_2:18856741-18856760 | Msa0060890:intron | 30.0% | |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | - | chr1_2:18855724-18855743 | Msa0060890:CDS | 30.0% |
| GGGGATGACAAAAAAAAATA+TGG | - | chr1_2:18855782-18855801 | Msa0060890:intron | 30.0% | |
| ! | TGTCTGAGGGTTATAAATTT+TGG | - | chr1_2:18855880-18855899 | Msa0060890:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | - | chr1_2:18855881-18855900 | Msa0060890:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | - | chr1_2:18855882-18855901 | Msa0060890:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | - | chr1_2:18856123-18856142 | Msa0060890:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | - | chr1_2:18856124-18856143 | Msa0060890:intron | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | + | chr1_2:18856168-18856187 | None:intergenic | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | - | chr1_2:18856401-18856420 | Msa0060890:intron | 30.0% | |
| ! | GGAGATTCATTGTTTTCATA+TGG | + | chr1_2:18856598-18856617 | None:intergenic | 30.0% |
| ATGAAAACAATGAATCTCCA+AGG | - | chr1_2:18856599-18856618 | Msa0060890:intron | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | + | chr1_2:18856694-18856713 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | + | chr1_2:18856699-18856718 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | - | chr1_2:18856698-18856717 | Msa0060890:intron | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | - | chr1_2:18856741-18856760 | Msa0060890:intron | 30.0% | |
| ! | GAACGGTTGTTGTTAAATGA+GGG | + | chr1_2:18855336-18855355 | None:intergenic | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | + | chr1_2:18855337-18855356 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | - | chr1_2:18855636-18855655 | Msa0060890:CDS | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | - | chr1_2:18855655-18855674 | Msa0060890:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | - | chr1_2:18855656-18855675 | Msa0060890:CDS | 35.0% | |
| !!! | GTGCATCACTTTTTGTTTGA+AGG | - | chr1_2:18855687-18855706 | Msa0060890:CDS | 35.0% |
| ! | TTTTGTGTCTGTGTAGATAC+CGG | + | chr1_2:18856232-18856251 | None:intergenic | 35.0% |
| CTTAACTACGTGCTTATGTT+TGG | - | chr1_2:18856546-18856565 | Msa0060890:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | - | chr1_2:18856657-18856676 | Msa0060890:intron | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | + | chr1_2:18856695-18856714 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_2:18856733-18856752 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | - | chr1_2:18856774-18856793 | Msa0060890:intron | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | - | chr1_2:18856775-18856794 | Msa0060890:intron | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | - | chr1_2:18856858-18856877 | Msa0060890:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | - | chr1_2:18856859-18856878 | Msa0060890:intron | 35.0% | |
| ! | GAACGGTTGTTGTTAAATGA+GGG | + | chr1_2:18855336-18855355 | None:intergenic | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | + | chr1_2:18855337-18855356 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | - | chr1_2:18855636-18855655 | Msa0060890:CDS | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | - | chr1_2:18855655-18855674 | Msa0060890:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | - | chr1_2:18855656-18855675 | Msa0060890:CDS | 35.0% | |
| !!! | GTGCATCACTTTTTGTTTGA+AGG | - | chr1_2:18855687-18855706 | Msa0060890:CDS | 35.0% |
| ! | TTTTGTGTCTGTGTAGATAC+CGG | + | chr1_2:18856232-18856251 | None:intergenic | 35.0% |
| CTTAACTACGTGCTTATGTT+TGG | - | chr1_2:18856546-18856565 | Msa0060890:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | - | chr1_2:18856657-18856676 | Msa0060890:intron | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | + | chr1_2:18856695-18856714 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_2:18856733-18856752 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | - | chr1_2:18856774-18856793 | Msa0060890:intron | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | - | chr1_2:18856775-18856794 | Msa0060890:intron | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | - | chr1_2:18856858-18856877 | Msa0060890:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | - | chr1_2:18856859-18856878 | Msa0060890:intron | 35.0% | |
| GGTGGGTGACAAAATAAACA+AGG | - | chr1_2:18856141-18856160 | Msa0060890:intron | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+CGG | - | chr1_2:18856210-18856229 | Msa0060890:intron | 40.0% | |
| ACATCATCACTTGACGTTAG+TGG | + | chr1_2:18856307-18856326 | None:intergenic | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | - | chr1_2:18856326-18856345 | Msa0060890:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | - | chr1_2:18856569-18856588 | Msa0060890:intron | 40.0% | |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | + | chr1_2:18856619-18856638 | None:intergenic | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | + | chr1_2:18856664-18856683 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | + | chr1_2:18856667-18856686 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | + | chr1_2:18856761-18856780 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_2:18856835-18856854 | Msa0060890:intron | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | - | chr1_2:18856863-18856882 | Msa0060890:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_2:18856886-18856905 | Msa0060890:intron | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | + | chr1_2:18856913-18856932 | None:intergenic | 40.0% |
| GGTGGGTGACAAAATAAACA+AGG | - | chr1_2:18856141-18856160 | Msa0060890:intron | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+CGG | - | chr1_2:18856210-18856229 | Msa0060890:intron | 40.0% | |
| ACATCATCACTTGACGTTAG+TGG | + | chr1_2:18856307-18856326 | None:intergenic | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | - | chr1_2:18856326-18856345 | Msa0060890:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | - | chr1_2:18856569-18856588 | Msa0060890:intron | 40.0% | |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | + | chr1_2:18856619-18856638 | None:intergenic | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | + | chr1_2:18856664-18856683 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | + | chr1_2:18856667-18856686 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | + | chr1_2:18856761-18856780 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_2:18856835-18856854 | Msa0060890:intron | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | - | chr1_2:18856863-18856882 | Msa0060890:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_2:18856886-18856905 | Msa0060890:intron | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | + | chr1_2:18856913-18856932 | None:intergenic | 40.0% |
| CAGAGCTTGATTGTGCTGAA+CGG | + | chr1_2:18855353-18855372 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | - | chr1_2:18855961-18855980 | Msa0060890:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | + | chr1_2:18856337-18856356 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | - | chr1_2:18856568-18856587 | Msa0060890:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_2:18856927-18856946 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | + | chr1_2:18856930-18856949 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | - | chr1_2:18856927-18856946 | Msa0060890:intron | 45.0% | |
| AACCATGAGGCTCAATTCAG+TGG | - | chr1_2:18856940-18856959 | Msa0060890:intron | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | - | chr1_2:18856969-18856988 | Msa0060890:intron | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | - | chr1_2:18856974-18856993 | Msa0060890:intron | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | - | chr1_2:18856978-18856997 | Msa0060890:intron | 45.0% | |
| CAGAGCTTGATTGTGCTGAA+CGG | + | chr1_2:18855353-18855372 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | - | chr1_2:18855961-18855980 | Msa0060890:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | + | chr1_2:18856337-18856356 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | - | chr1_2:18856568-18856587 | Msa0060890:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_2:18856927-18856946 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | + | chr1_2:18856930-18856949 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | - | chr1_2:18856927-18856946 | Msa0060890:intron | 45.0% | |
| AACCATGAGGCTCAATTCAG+TGG | - | chr1_2:18856940-18856959 | Msa0060890:intron | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | - | chr1_2:18856969-18856988 | Msa0060890:intron | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | - | chr1_2:18856974-18856993 | Msa0060890:intron | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | - | chr1_2:18856978-18856997 | Msa0060890:intron | 45.0% | |
| !!! | TTTAATGAAATTTTTATTTA+AGG | - | chr1_2:18855761-18855780 | Msa0060890:CDS | 5.0% |
| !!! | TTAATGAAATTTTTATTTAA+GGG | - | chr1_2:18855762-18855781 | Msa0060890:CDS | 5.0% |
| !! | AATAATAAATTAATTATTTG+AGG | - | chr1_2:18856069-18856088 | Msa0060890:intron | 5.0% |
| !!! | TTTAATGAAATTTTTATTTA+AGG | - | chr1_2:18855761-18855780 | Msa0060890:CDS | 5.0% |
| !!! | TTAATGAAATTTTTATTTAA+GGG | - | chr1_2:18855762-18855781 | Msa0060890:CDS | 5.0% |
| !! | AATAATAAATTAATTATTTG+AGG | - | chr1_2:18856069-18856088 | Msa0060890:intron | 5.0% |
| CGTTCAGCACAATCAAGCTC+TGG | - | chr1_2:18855351-18855370 | Msa0060890:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | + | chr1_2:18856579-18856598 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | + | chr1_2:18856809-18856828 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_2:18856868-18856887 | Msa0060890:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_2:18856869-18856888 | Msa0060890:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_2:18856878-18856897 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_2:18856876-18856895 | Msa0060890:intron | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | + | chr1_2:18856945-18856964 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | - | chr1_2:18856973-18856992 | Msa0060890:intron | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | - | chr1_2:18856979-18856998 | Msa0060890:intron | 50.0% | |
| CGTTCAGCACAATCAAGCTC+TGG | - | chr1_2:18855351-18855370 | Msa0060890:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | + | chr1_2:18856579-18856598 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | + | chr1_2:18856809-18856828 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_2:18856868-18856887 | Msa0060890:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_2:18856869-18856888 | Msa0060890:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_2:18856878-18856897 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_2:18856876-18856895 | Msa0060890:intron | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | + | chr1_2:18856945-18856964 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | - | chr1_2:18856973-18856992 | Msa0060890:intron | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | - | chr1_2:18856979-18856998 | Msa0060890:intron | 50.0% | |
| CATGGGCATCATCACCACTG+AGG | - | chr1_2:18856792-18856811 | Msa0060890:intron | 55.0% | |
| CATGGGCATCATCACCACTG+AGG | - | chr1_2:18856792-18856811 | Msa0060890:intron | 55.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | - | chr1_2:18856958-18856977 | Msa0060890:intron | 60.0% | |
| AACATGGATGGGTCGGGTGC+TGG | - | chr1_2:18856985-18857004 | Msa0060890:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | - | chr1_2:18857006-18857025 | Msa0060890:CDS | 60.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | - | chr1_2:18856958-18856977 | Msa0060890:intron | 60.0% | |
| AACATGGATGGGTCGGGTGC+TGG | - | chr1_2:18856985-18857004 | Msa0060890:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | - | chr1_2:18857006-18857025 | Msa0060890:CDS | 60.0% | |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | - | chr1_2:18856988-18857007 | Msa0060890:CDS | 65.0% |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | - | chr1_2:18856988-18857007 | Msa0060890:CDS | 65.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | - | chr1_2:18857000-18857019 | Msa0060890:CDS | 70.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | - | chr1_2:18857000-18857019 | Msa0060890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18855318 | 18857038 | 18855318 | ID=Msa0060890;Name=Msa0060890 |
| chr1_2 | mRNA | 18855318 | 18857038 | 18855318 | ID=Msa0060890-mRNA-1;Parent=Msa0060890;Name=Msa0060890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.5|1|1|2|0|172 |
| chr1_2 | exon | 18856984 | 18857038 | 18856984 | ID=Msa0060890-mRNA-1:exon:7278;Parent=Msa0060890-mRNA-1 |
| chr1_2 | exon | 18855318 | 18855781 | 18855318 | ID=Msa0060890-mRNA-1:exon:7277;Parent=Msa0060890-mRNA-1 |
| chr1_2 | CDS | 18856984 | 18857038 | 18856984 | ID=Msa0060890-mRNA-1:cds;Parent=Msa0060890-mRNA-1 |
| chr1_2 | CDS | 18855318 | 18855781 | 18855318 | ID=Msa0060890-mRNA-1:cds;Parent=Msa0060890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
