AlfalfaGEDB | Msa0060890

M. sativa cultivar zhongmu-4 / Msa0060890

KEGG: K08065
GO: -
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060890	XP_013466407.1	91.860	172	14	0	1	172	1	172	5.53e-101	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060890	sp\|O23310\|NFYB3_ARATH	52.381	105	50	0	50	154	19	123	9.67e-34	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060890	A0A072VGA7	91.860	172	14	0	1	172	1	172	2.64e-101	298

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TFs/TRs:

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Gene ID	Type	Classification
Msa0060890	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060890	MtrunA17_Chr1g0159271	95.327	107	5	0	66	172	1	107	1.25e-61	186
Msa0060890	MtrunA17_Chr1g0185911	50.000	120	50	2	57	172	34	147	6.88e-35	120
Msa0060890	MtrunA17_Chr1g0165041	57.303	89	38	0	57	145	11	99	2.09e-34	119
Msa0060890	MtrunA17_Chr8g0382931	47.541	122	58	1	32	153	14	129	2.28e-34	120
Msa0060890	MtrunA17_Chr7g0263601	47.788	113	48	1	57	169	31	132	1.16e-33	117
Msa0060890	MtrunA17_Chr2g0290491	56.044	91	40	0	57	147	22	112	1.50e-32	114
Msa0060890	MtrunA17_Chr5g0446491	46.094	128	58	2	39	159	3	126	4.07e-32	113
Msa0060890	MtrunA17_Chr3g0102351	56.180	89	39	0	57	145	32	120	1.19e-31	112
Msa0060890	MtrunA17_Chr4g0076381	40.441	136	80	1	9	144	16	150	5.61e-31	112
Msa0060890	MtrunA17_Chr4g0076321	54.945	91	41	0	53	143	20	110	1.68e-30	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060890	AT4G14540.1	52.381	105	50	0	50	154	19	123	9.83e-35	120
Msa0060890	AT2G38880.7	50.893	112	51	2	57	168	26	133	2.26e-33	115
Msa0060890	AT3G53340.5	42.029	138	57	2	30	167	19	133	3.14e-33	116
Msa0060890	AT3G53340.1	42.029	138	57	2	30	167	19	133	3.14e-33	116
Msa0060890	AT2G38880.3	49.558	113	53	2	57	168	26	135	4.82e-33	115
Msa0060890	AT2G38880.2	49.558	113	53	2	57	168	26	135	5.35e-33	114
Msa0060890	AT2G38880.1	49.558	113	53	2	57	168	26	135	5.35e-33	114
Msa0060890	AT2G38880.5	49.558	113	53	2	57	168	26	135	5.35e-33	114
Msa0060890	AT2G37060.2	46.552	116	59	1	57	172	35	147	6.57e-33	115
Msa0060890	AT2G37060.3	46.552	116	59	1	57	172	35	147	6.57e-33	115

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Find 47 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGGATGGGTCGGGTGC+TGG	0.425049	1_2:-18855349	Msa0060890:CDS
AACCATGAGGCTCAATTCAG+TGG	0.593599	1_2:-18855394	Msa0060890:CDS
AACTGCTCGTGGATTCAACA+TGG	0.604751	1_2:-18855365	Msa0060890:CDS
ACACAATTGTGTTGTTGCCT+TGG	0.463454	1_2:+18855576	None:intergenic
AGTGGCACGTCAACTGCTCG+TGG	0.583180	1_2:-18855376	Msa0060890:CDS
AGTTCCTCATTTGTTGTTGG+AGG	0.507953	1_2:+18855673	None:intergenic
ATATAATATGGGCCATGGGT+AGG	0.601954	1_2:-18855471	Msa0060890:CDS
ATATGGGCCATGGGTAGGTT+AGG	0.348171	1_2:-18855466	Msa0060890:CDS
ATGAAAACAATGAATCTCCA+AGG	0.596844	1_2:-18855735	Msa0060890:CDS
ATGGACTCCCTGCTTGCAAA+CGG	0.525534	1_2:+18855758	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGGATGACAAAAAAAAATA+TGG	-	chr1_2:18855782-18855801	Msa0060890:intron	30.0%
AAATAAAGTGAGAGAAAAGG+TGG	-	chr1_2:18856123-18856142	Msa0060890:intron	30.0%
AATAAAGTGAGAGAAAAGGT+GGG	-	chr1_2:18856124-18856143	Msa0060890:intron	30.0%
GCAAAATTGACGTATTTAAG+GGG	+	chr1_2:18856168-18856187	None:intergenic	30.0%
TGTCAATTATACGTTACGTT+CGG	-	chr1_2:18856401-18856420	Msa0060890:intron	30.0%
ATGAAAACAATGAATCTCCA+AGG	-	chr1_2:18856599-18856618	Msa0060890:intron	30.0%
ATTCTTGTCAAATTTCGGAT+GGG	+	chr1_2:18856694-18856713	None:intergenic	30.0%
GCATGATTCTTGTCAAATTT+CGG	+	chr1_2:18856699-18856718	None:intergenic	30.0%
GAAATTTGACAAGAATCATG+CGG	-	chr1_2:18856698-18856717	Msa0060890:intron	30.0%
AAAAATATCTCAAGATGCCA+AGG	-	chr1_2:18856741-18856760	Msa0060890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	18855318	18857038	18855318	ID=Msa0060890;Name=Msa0060890
chr1_2	mRNA	18855318	18857038	18855318	ID=Msa0060890-mRNA-1;Parent=Msa0060890;Name=Msa0060890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|172
chr1_2	exon	18856984	18857038	18856984	ID=Msa0060890-mRNA-1:exon:7278;Parent=Msa0060890-mRNA-1
chr1_2	exon	18855318	18855781	18855318	ID=Msa0060890-mRNA-1:exon:7277;Parent=Msa0060890-mRNA-1
chr1_2	CDS	18856984	18857038	18856984	ID=Msa0060890-mRNA-1:cds;Parent=Msa0060890-mRNA-1
chr1_2	CDS	18855318	18855781	18855318	ID=Msa0060890-mRNA-1:cds;Parent=Msa0060890-mRNA-1

Gene Sequence

>Msa0060890

ATGGAGCATGGAAGTCCCTCATTTAACAACAACCGTTCAGCACAATCAAGCTCTGTCCGTTTGCAAGCAGGGAGTCCATATGAAAACAATGAATCTCCAAGGACCAAAAACATTGATGCTGAAATTGAGAAACAAGATTTACCTCCAACAACAAATGAGGAACTGTGTCTTCCCATCCGAAATTTGACAAGAATCATGCGGCGTGCTCTTCCATCGTACGCAAAAATATCTCAAGATGCCAAGGCAACAACACAATTGTGTGTGTCTGATTTCATGGGCATCATCACCACTGAGGCTGTTGAGAAATGCAATGAAGAGAGTCGAAAGATCATTAGTGGTGAAGATATAATATGGGCCATGGGTAGGTTAGGGTTTGAGGACTATGTTGGTCCTCTATCTCTTCTCCTCCAAAACTATCGCAACCATGAGGCTCAATTCAGTGGCACGTCAACTGCTCGTGGATTCAACATGGATGGGTCGGGTGCTGGTGGCTCGAGCAGTGGTAATGGCCAATATTGA

Protein sequence

>Msa0060890

MEHGSPSFNNNRSAQSSSVRLQAGSPYENNESPRTKNIDAEIEKQDLPPTTNEELCLPIRNLTRIMRRALPSYAKISQDAKATTQLCVSDFMGIITTEAVEKCNEESRKIISGEDIIWAMGRLGFEDYVGPLSLLLQNYRNHEAQFSGTSTARGFNMDGSGAGGSSSGNGQY*