Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061990 | XP_024630307.1 | 80.435 | 276 | 31 | 3 | 37 | 289 | 5 | 280 | 3.03e-148 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061990 | sp|Q8RYD1|REM16_ARATH | 25.926 | 324 | 190 | 14 | 15 | 294 | 18 | 335 | 3.67e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061990 | A0A072VFY6 | 85.714 | 175 | 22 | 1 | 1 | 172 | 1 | 175 | 5.28e-107 | 319 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0061990 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061990 | MtrunA17_Chr1g0163101 | 74.706 | 170 | 36 | 3 | 7 | 172 | 2 | 168 | 9.87e-89 | 263 |
| Msa0061990 | MtrunA17_Chr1g0162161 | 84.892 | 139 | 18 | 1 | 37 | 172 | 3 | 141 | 6.13e-84 | 250 |
| Msa0061990 | MtrunA17_Chr1g0163131 | 45.183 | 301 | 130 | 5 | 10 | 276 | 6 | 305 | 5.70e-80 | 245 |
| Msa0061990 | MtrunA17_Chr1g0163081 | 73.913 | 138 | 28 | 3 | 37 | 171 | 5 | 137 | 9.00e-66 | 203 |
| Msa0061990 | MtrunA17_Chr1g0163251 | 41.754 | 285 | 133 | 5 | 31 | 289 | 14 | 291 | 4.87e-62 | 202 |
| Msa0061990 | MtrunA17_Chr6g0476181 | 64.286 | 154 | 30 | 3 | 37 | 170 | 1 | 149 | 3.18e-61 | 192 |
| Msa0061990 | MtrunA17_Chr1g0162151 | 73.826 | 149 | 21 | 3 | 170 | 310 | 3 | 141 | 1.09e-60 | 192 |
| Msa0061990 | MtrunA17_Chr1g0163231 | 43.617 | 282 | 127 | 9 | 22 | 280 | 9 | 281 | 9.30e-60 | 193 |
| Msa0061990 | MtrunA17_Chr1g0163261 | 39.661 | 295 | 144 | 9 | 22 | 290 | 9 | 295 | 3.14e-59 | 192 |
| Msa0061990 | MtrunA17_Chr1g0163121 | 70.000 | 130 | 32 | 3 | 36 | 162 | 9 | 134 | 3.38e-57 | 181 |
| Msa0061990 | MtrunA17_Chr1g0163141 | 61.635 | 159 | 39 | 3 | 36 | 172 | 9 | 167 | 4.09e-57 | 182 |
| Msa0061990 | MtrunA17_Chr1g0163091 | 62.000 | 150 | 46 | 2 | 170 | 311 | 3 | 149 | 3.70e-56 | 179 |
| Msa0061990 | MtrunA17_Chr1g0163181 | 36.246 | 309 | 151 | 9 | 20 | 288 | 1 | 303 | 1.10e-54 | 184 |
| Msa0061990 | MtrunA17_Chr1g0171611 | 39.731 | 297 | 126 | 10 | 8 | 280 | 2 | 269 | 4.32e-54 | 178 |
| Msa0061990 | MtrunA17_Chr1g0163161 | 65.891 | 129 | 40 | 2 | 50 | 174 | 1 | 129 | 1.11e-52 | 169 |
| Msa0061990 | MtrunA17_Chr1g0163201 | 36.585 | 287 | 136 | 8 | 38 | 288 | 19 | 295 | 7.69e-50 | 170 |
| Msa0061990 | MtrunA17_Chr6g0476171 | 41.379 | 145 | 70 | 3 | 164 | 293 | 6 | 150 | 2.62e-27 | 107 |
| Msa0061990 | MtrunA17_Chr4g0067431 | 27.760 | 317 | 171 | 12 | 19 | 285 | 12 | 320 | 1.49e-26 | 106 |
| Msa0061990 | MtrunA17_Chr3g0131891 | 26.562 | 320 | 197 | 12 | 18 | 301 | 15 | 332 | 2.77e-25 | 103 |
| Msa0061990 | MtrunA17_Chr8g0390841 | 27.554 | 323 | 187 | 11 | 8 | 284 | 16 | 337 | 5.70e-25 | 104 |
| Msa0061990 | MtrunA17_Chr1g0163151 | 44.094 | 127 | 58 | 3 | 170 | 288 | 3 | 124 | 1.56e-24 | 99.0 |
| Msa0061990 | MtrunA17_Chr1g0163221 | 27.303 | 304 | 172 | 11 | 19 | 285 | 8 | 299 | 2.40e-23 | 98.6 |
| Msa0061990 | MtrunA17_Chr1g0163111 | 42.241 | 116 | 59 | 1 | 177 | 284 | 2 | 117 | 2.74e-23 | 95.9 |
| Msa0061990 | MtrunA17_Chr3g0103171 | 27.715 | 267 | 157 | 9 | 38 | 276 | 6 | 264 | 3.10e-22 | 94.0 |
| Msa0061990 | MtrunA17_Chr1g0208771 | 29.831 | 295 | 160 | 12 | 38 | 290 | 13 | 302 | 3.28e-22 | 96.7 |
| Msa0061990 | MtrunA17_Chr1g0208771 | 24.820 | 278 | 172 | 10 | 22 | 280 | 201 | 460 | 4.05e-12 | 66.6 |
| Msa0061990 | MtrunA17_Chr1g0163241 | 38.596 | 114 | 63 | 3 | 38 | 144 | 23 | 136 | 4.58e-20 | 85.5 |
| Msa0061990 | MtrunA17_Chr7g0233561 | 26.710 | 307 | 171 | 11 | 18 | 278 | 14 | 312 | 4.85e-20 | 89.0 |
| Msa0061990 | MtrunA17_Chr1g0163071 | 24.194 | 310 | 188 | 7 | 37 | 300 | 1 | 309 | 3.19e-19 | 86.3 |
| Msa0061990 | MtrunA17_Chr3g0077411 | 25.850 | 294 | 173 | 9 | 5 | 276 | 245 | 515 | 4.78e-19 | 87.4 |
| Msa0061990 | MtrunA17_Chr7g0233531 | 28.464 | 267 | 162 | 9 | 37 | 278 | 1 | 263 | 5.29e-19 | 85.1 |
| Msa0061990 | MtrunA17_Chr1g0163191 | 39.623 | 106 | 60 | 2 | 31 | 132 | 14 | 119 | 1.18e-18 | 81.6 |
| Msa0061990 | MtrunA17_Chr7g0233521 | 27.698 | 278 | 150 | 9 | 37 | 278 | 1 | 263 | 2.48e-18 | 83.2 |
| Msa0061990 | MtrunA17_Chr6g0467351 | 41.489 | 94 | 51 | 3 | 19 | 108 | 12 | 105 | 3.69e-17 | 79.3 |
| Msa0061990 | MtrunA17_Chr1g0163061 | 42.553 | 94 | 50 | 2 | 19 | 108 | 12 | 105 | 1.19e-16 | 78.6 |
| Msa0061990 | MtrunA17_Chr7g0233541 | 27.368 | 285 | 159 | 11 | 37 | 278 | 1 | 280 | 3.60e-16 | 77.4 |
| Msa0061990 | MtrunA17_Chr5g0419201 | 32.824 | 131 | 78 | 4 | 22 | 142 | 16 | 146 | 2.18e-15 | 73.2 |
| Msa0061990 | MtrunA17_Chr5g0419211 | 37.255 | 102 | 52 | 2 | 208 | 300 | 11 | 109 | 2.33e-15 | 71.2 |
| Msa0061990 | MtrunA17_Chr3g0103151 | 35.659 | 129 | 70 | 5 | 20 | 142 | 10 | 131 | 2.56e-15 | 72.4 |
| Msa0061990 | MtrunA17_Chr7g0233571 | 35.772 | 123 | 73 | 3 | 21 | 137 | 9 | 131 | 5.01e-15 | 73.2 |
| Msa0061990 | MtrunA17_Chr5g0429931 | 25.969 | 258 | 150 | 9 | 38 | 279 | 11 | 243 | 1.79e-14 | 72.0 |
| Msa0061990 | MtrunA17_Chr3g0077451 | 25.379 | 264 | 143 | 11 | 36 | 281 | 10 | 237 | 1.94e-13 | 68.9 |
| Msa0061990 | MtrunA17_Chr1g0154161 | 23.214 | 280 | 180 | 10 | 15 | 265 | 23 | 296 | 1.19e-11 | 64.7 |
| Msa0061990 | MtrunA17_Chr3g0077461 | 24.476 | 286 | 164 | 10 | 5 | 276 | 220 | 467 | 1.88e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061990 | AT4G33280.1 | 25.926 | 324 | 190 | 14 | 15 | 294 | 18 | 335 | 3.74e-13 | 69.7 |
Find 49 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAATCTGGTTAGAATTT+TGG | 0.111857 | 1_2:+21047250 | None:intergenic |
| TCCCTTCTTGTTTACAAATC+TGG | 0.256431 | 1_2:+21047238 | None:intergenic |
| CACAACGTGGTGATGATATT+TGG | 0.270123 | 1_2:-21047419 | Msa0061990:CDS |
| CAGACTCATTTGGAAGTCTA+AGG | 0.283975 | 1_2:+21047460 | None:intergenic |
| TTTGGAAGTCTAAGGGATAT+TGG | 0.307140 | 1_2:+21047468 | None:intergenic |
| AGTCTGAGTGTAAAATGTTT+TGG | 0.322768 | 1_2:-21047443 | Msa0061990:CDS |
| ATGATATTTGGCTTATGAAT+TGG | 0.336273 | 1_2:-21047407 | Msa0061990:CDS |
| TCAAAGGGATTGCAAGCATT+AGG | 0.348097 | 1_2:-21046128 | Msa0061990:CDS |
| CAAAGGGATTGCAAGCATTA+GGG | 0.352259 | 1_2:-21046127 | Msa0061990:intron |
| TGTTTCTTGTTGATAAGTTT+AGG | 0.354156 | 1_2:-21045184 | Msa0061990:CDS |
| AAAACTTGGATTCTTATCAT+TGG | 0.358112 | 1_2:+21046306 | None:intergenic |
| TATTCTCTTGAAAACTTACT+TGG | 0.379463 | 1_2:+21046162 | None:intergenic |
| ACTCACGAAGTTGAATAGTT+TGG | 0.408216 | 1_2:+21048409 | None:intergenic |
| TGCCCTATTTAGTTACCATT+CGG | 0.420218 | 1_2:-21045214 | Msa0061990:intron |
| ACTCCAGCTGCTACACTTCA+AGG | 0.428131 | 1_2:-21047174 | Msa0061990:CDS |
| GTCAATTTAAGTTCAAAACT+TGG | 0.433190 | 1_2:+21046292 | None:intergenic |
| TGAGTGTTCTTACTAGCTCT+TGG | 0.453374 | 1_2:+21048379 | None:intergenic |
| GGCTTGATTCCTCTCTAGCT+CGG | 0.457584 | 1_2:+21045932 | None:intergenic |
| GTCCCTTGAAGTGTAGCAGC+TGG | 0.458922 | 1_2:+21047171 | None:intergenic |
| TGGCCGTGGAAGTCATGATA+AGG | 0.474120 | 1_2:-21048445 | Msa0061990:CDS |
| AACCAGATTTGTAAACAAGA+AGG | 0.479388 | 1_2:-21047240 | Msa0061990:CDS |
| GAATGGTGGTGTGCTGTTGA+AGG | 0.481500 | 1_2:+21048472 | None:intergenic |
| TATCTCTCTACAAAATTCCT+TGG | 0.487897 | 1_2:+21047510 | None:intergenic |
| AATACTTGAACGAGTTCAAA+GGG | 0.491876 | 1_2:-21046143 | Msa0061990:CDS |
| GGCCGTGGAAGTCATGATAA+GGG | 0.518786 | 1_2:-21048444 | Msa0061990:CDS |
| ACCACCATTCACCATGGCCG+TGG | 0.523585 | 1_2:-21048459 | Msa0061990:CDS |
| GTTCTATTGTGAATGGTGGT+TGG | 0.525249 | 1_2:-21046050 | Msa0061990:CDS |
| ACTTCCACGGCCATGGTGAA+TGG | 0.529893 | 1_2:+21048455 | None:intergenic |
| GCTGGAGTAGCAATATCAAT+CGG | 0.531001 | 1_2:+21047189 | None:intergenic |
| GCTTGATTCCTCTCTAGCTC+GGG | 0.531379 | 1_2:+21045933 | None:intergenic |
| TATCATGACTTCCACGGCCA+TGG | 0.534966 | 1_2:+21048448 | None:intergenic |
| TTCTATTTCCCGAGCTAGAG+AGG | 0.537691 | 1_2:-21045941 | Msa0061990:CDS |
| ATAGAAATATTAAAAGAAAG+AGG | 0.543614 | 1_2:+21045958 | None:intergenic |
| GAATACTTGAACGAGTTCAA+AGG | 0.559537 | 1_2:-21046144 | Msa0061990:CDS |
| ACCAGATTTGTAAACAAGAA+GGG | 0.569287 | 1_2:-21047239 | Msa0061990:CDS |
| TTTGCACGGTCGCTTAGATG+TGG | 0.573143 | 1_2:-21047378 | Msa0061990:CDS |
| AACAGAAGTTCTATTGTGAA+TGG | 0.573160 | 1_2:-21046057 | Msa0061990:CDS |
| TGTAAACAAGAAGGGAGTGA+TGG | 0.584899 | 1_2:-21047231 | Msa0061990:CDS |
| TTCCCTTATCATGACTTCCA+CGG | 0.586234 | 1_2:+21048442 | None:intergenic |
| CTCCAGCTGCTACACTTCAA+GGG | 0.587626 | 1_2:-21047173 | Msa0061990:CDS |
| AATGGTGGTGTGCTGTTGAA+GGG | 0.587983 | 1_2:+21048473 | None:intergenic |
| AGACTCATTTGGAAGTCTAA+GGG | 0.595723 | 1_2:+21047461 | None:intergenic |
| TGGTTGGAATTTATTTACCA+AGG | 0.603797 | 1_2:-21046034 | Msa0061990:CDS |
| AAGAAACATTGCATACCGAA+TGG | 0.638200 | 1_2:+21045199 | None:intergenic |
| AGAAGTTCTATTGTGAATGG+TGG | 0.647616 | 1_2:-21046054 | Msa0061990:CDS |
| TCCACGGCCATGGTGAATGG+TGG | 0.655020 | 1_2:+21048458 | None:intergenic |
| AAGGAAAATAACTTGCAAGT+CGG | 0.656533 | 1_2:-21046015 | Msa0061990:CDS |
| TGTGCATGCAGATGATACCA+AGG | 0.664773 | 1_2:-21047527 | Msa0061990:intron |
| CAGCACACCACCATTCACCA+TGG | 0.696960 | 1_2:-21048465 | Msa0061990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATACATAAATAAAGT+GGG | + | chr1_2:21046688-21046707 | None:intergenic | 10.0% |
| !! | TATAAAATACATAAATAAAG+TGG | + | chr1_2:21046689-21046708 | None:intergenic | 10.0% |
| !!! | CAATGTATGAATTTAATTTT+AGG | + | chr1_2:21045744-21045763 | None:intergenic | 15.0% |
| !!! | AATCATAAATGCTTTTTTTT+CGG | + | chr1_2:21046023-21046042 | None:intergenic | 15.0% |
| !! | TTAAAATTGAGATAATCAAA+GGG | + | chr1_2:21046600-21046619 | None:intergenic | 15.0% |
| !! | ATTAAAATTGAGATAATCAA+AGG | + | chr1_2:21046601-21046620 | None:intergenic | 15.0% |
| !! | AGAGAAATATGTATTTAAAA+AGG | + | chr1_2:21046716-21046735 | None:intergenic | 15.0% |
| !!! | GTAAAAAGTACTATTTATTT+AGG | - | chr1_2:21046797-21046816 | Msa0061990:intron | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_2:21047029-21047048 | Msa0061990:intron | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_2:21047029-21047048 | Msa0061990:intron | 15.0% |
| !!! | TTTGAAAATGTCTATTATTT+TGG | - | chr1_2:21047398-21047417 | Msa0061990:CDS | 15.0% |
| !! | ATAGAAATATTAAAAGAAAG+AGG | + | chr1_2:21047673-21047692 | None:intergenic | 15.0% |
| !!! | AGTAAATGACATTTTTTTTT+TGG | - | chr1_2:21048036-21048055 | Msa0061990:intron | 15.0% |
| !! | ATAAAAACTACAAATCATCA+GGG | - | chr1_2:21045584-21045603 | Msa0061990:intron | 20.0% |
| !!! | GAGATTTTCAATTTCATTAA+TGG | - | chr1_2:21045693-21045712 | Msa0061990:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr1_2:21046277-21046296 | Msa0061990:CDS | 20.0% |
| !! | TGATTTATGTATCTATTTGT+AGG | - | chr1_2:21046553-21046572 | Msa0061990:intron | 20.0% |
| !!! | TTCAATTTTGTTTCGATTAA+AGG | - | chr1_2:21046743-21046762 | Msa0061990:intron | 20.0% |
| !!! | ACTTACAAATAATTTTCCTT+GGG | + | chr1_2:21047373-21047392 | None:intergenic | 20.0% |
| !!! | AACTTACAAATAATTTTCCT+TGG | + | chr1_2:21047374-21047393 | None:intergenic | 20.0% |
| !! | TGTTTGTTTATTAAAGTTTG+TGG | - | chr1_2:21047756-21047775 | Msa0061990:intron | 20.0% |
| !!! | TATTAAAGTTTGTGGTTTTT+TGG | - | chr1_2:21047764-21047783 | Msa0061990:intron | 20.0% |
| !! | ACGTATCTAGTCAAATTTTA+GGG | - | chr1_2:21045492-21045511 | Msa0061990:intron | 25.0% |
| ! | CATAAAAACTACAAATCATC+AGG | - | chr1_2:21045583-21045602 | Msa0061990:intron | 25.0% |
| ! | GGGTAACTAATTATTTCAAA+TGG | - | chr1_2:21045656-21045675 | Msa0061990:intron | 25.0% |
| !! | AAATTTGTCATTTGATTCTC+CGG | + | chr1_2:21045777-21045796 | None:intergenic | 25.0% |
| ! | ACAAATTTCTAATCATTGCT+TGG | - | chr1_2:21045789-21045808 | Msa0061990:intron | 25.0% |
| ! | TTTGTGATAGACTTAAAATG+TGG | - | chr1_2:21045872-21045891 | Msa0061990:intron | 25.0% |
| ! | ATGTTGAAGCAAAATATGTT+TGG | + | chr1_2:21045917-21045936 | None:intergenic | 25.0% |
| ! | AAAAATTTAGGTGGGAAAAT+GGG | + | chr1_2:21045996-21046015 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTGACAAAAATTT+AGG | + | chr1_2:21046008-21046027 | None:intergenic | 25.0% |
| !! | ATGATATTTGGCTTATGAAT+TGG | - | chr1_2:21046221-21046240 | Msa0061990:intron | 25.0% |
| ! | TGAATTGGAAAAAATTTGCA+CGG | - | chr1_2:21046236-21046255 | Msa0061990:intron | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr1_2:21046280-21046299 | Msa0061990:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr1_2:21046281-21046300 | Msa0061990:CDS | 25.0% |
| !! | TACAAATCTGGTTAGAATTT+TGG | + | chr1_2:21046381-21046400 | None:intergenic | 25.0% |
| ! | TGGAGTAAAAATAGAATAGA+AGG | + | chr1_2:21046630-21046649 | None:intergenic | 25.0% |
| !! | ATGTACTTTTGCATTTTGTA+TGG | + | chr1_2:21046650-21046669 | None:intergenic | 25.0% |
| !! | ATACAAAATGCAAAAGTACA+TGG | - | chr1_2:21046649-21046668 | Msa0061990:intron | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_2:21047018-21047037 | None:intergenic | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_2:21047018-21047037 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTTATCAT+TGG | + | chr1_2:21047325-21047344 | None:intergenic | 25.0% |
| !! | GTCAATTTAAGTTCAAAACT+TGG | + | chr1_2:21047339-21047358 | None:intergenic | 25.0% |
| ! | TATTCTCTTGAAAACTTACT+TGG | + | chr1_2:21047469-21047488 | None:intergenic | 25.0% |
| !!! | AGTAACCTTGCAATTTTTTA+GGG | + | chr1_2:21047720-21047739 | None:intergenic | 25.0% |
| !!! | AAGTAACCTTGCAATTTTTT+AGG | + | chr1_2:21047721-21047740 | None:intergenic | 25.0% |
| ! | AAACTTCTAAATCTGTAGAA+GGG | + | chr1_2:21047842-21047861 | None:intergenic | 25.0% |
| ! | ATTTAGAAGTTTCTAATGTG+AGG | - | chr1_2:21047850-21047869 | Msa0061990:intron | 25.0% |
| ! | TTTAGAAGTTTCTAATGTGA+GGG | - | chr1_2:21047851-21047870 | Msa0061990:intron | 25.0% |
| ! | ATTAACTATTACGCAAATTG+TGG | - | chr1_2:21047920-21047939 | Msa0061990:intron | 25.0% |
| ! | GATTAAGAAAGAATGCAAAT+TGG | - | chr1_2:21048175-21048194 | Msa0061990:intron | 25.0% |
| !! | TGTTTCTTGTTGATAAGTTT+AGG | - | chr1_2:21048444-21048463 | Msa0061990:CDS | 25.0% |
| ! | AAAAGAAATGGTACTTGTTG+AGG | + | chr1_2:21045325-21045344 | None:intergenic | 30.0% |
| TGGTGAGGAAATAAAAGAAA+TGG | + | chr1_2:21045337-21045356 | None:intergenic | 30.0% | |
| !! | TCTTGCTTTGTTAGTTTGTT+TGG | + | chr1_2:21045357-21045376 | None:intergenic | 30.0% |
| TGATATAACAAAGCTTGAGA+GGG | + | chr1_2:21045406-21045425 | None:intergenic | 30.0% | |
| ATGATATAACAAAGCTTGAG+AGG | + | chr1_2:21045407-21045426 | None:intergenic | 30.0% | |
| GCTGAATATGTACAATGAAA+TGG | + | chr1_2:21045466-21045485 | None:intergenic | 30.0% | |
| ! | CACGTATCTAGTCAAATTTT+AGG | - | chr1_2:21045491-21045510 | Msa0061990:intron | 30.0% |
| ! | CGTATCTAGTCAAATTTTAG+GGG | - | chr1_2:21045493-21045512 | Msa0061990:intron | 30.0% |
| !! | AGTGTTGATTATCTCATTAG+TGG | - | chr1_2:21045545-21045564 | Msa0061990:intron | 30.0% |
| !! | AATTAGTTACCCATTTTTGC+TGG | + | chr1_2:21045648-21045667 | None:intergenic | 30.0% |
| AATTTCTAATCATTGCTTGG+AGG | - | chr1_2:21045792-21045811 | Msa0061990:intron | 30.0% | |
| TGATAGACTTAAAATGTGGA+TGG | - | chr1_2:21045876-21045895 | Msa0061990:intron | 30.0% | |
| GATAGACTTAAAATGTGGAT+GGG | - | chr1_2:21045877-21045896 | Msa0061990:intron | 30.0% | |
| ATAGACTTAAAATGTGGATG+GGG | - | chr1_2:21045878-21045897 | Msa0061990:intron | 30.0% | |
| GCAAAATATGTTTGGATCAT+GGG | + | chr1_2:21045909-21045928 | None:intergenic | 30.0% | |
| AGCAAAATATGTTTGGATCA+TGG | + | chr1_2:21045910-21045929 | None:intergenic | 30.0% | |
| ! | CATATTTTGCTTCAACATGT+TGG | - | chr1_2:21045919-21045938 | Msa0061990:CDS | 30.0% |
| CAAAAATTTAGGTGGGAAAA+TGG | + | chr1_2:21045997-21046016 | None:intergenic | 30.0% | |
| ! | TAATCCAAGTTGAAACTCAT+TGG | - | chr1_2:21046068-21046087 | Msa0061990:CDS | 30.0% |
| AAAACCAATGAGTTTCAACT+TGG | + | chr1_2:21046075-21046094 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_2:21046121-21046140 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_2:21046122-21046141 | Msa0061990:intron | 30.0% |
| ! | ATTTTACACTCAGACTCATT+TGG | + | chr1_2:21046181-21046200 | None:intergenic | 30.0% |
| ! | AGTCTGAGTGTAAAATGTTT+TGG | - | chr1_2:21046185-21046204 | Msa0061990:intron | 30.0% |
| ! | GTCTGAGTGTAAAATGTTTT+GGG | - | chr1_2:21046186-21046205 | Msa0061990:intron | 30.0% |
| AACCAGATTTGTAAACAAGA+AGG | - | chr1_2:21046388-21046407 | Msa0061990:intron | 30.0% | |
| ACCAGATTTGTAAACAAGAA+GGG | - | chr1_2:21046389-21046408 | Msa0061990:intron | 30.0% | |
| ! | AAAAAAGCTCTAACAAAGTG+AGG | + | chr1_2:21046829-21046848 | None:intergenic | 30.0% |
| ! | AATTTTGCAGGTACTAACAA+AGG | - | chr1_2:21047041-21047060 | Msa0061990:intron | 30.0% |
| ! | AATTTTGCAGGTACTAACAA+AGG | - | chr1_2:21047041-21047060 | Msa0061990:intron | 30.0% |
| GTATTCTCTGTTTCAATTCA+TGG | + | chr1_2:21047447-21047466 | None:intergenic | 30.0% | |
| AATACTTGAACGAGTTCAAA+GGG | - | chr1_2:21047485-21047504 | Msa0061990:CDS | 30.0% | |
| AACAGAAGTTCTATTGTGAA+TGG | - | chr1_2:21047571-21047590 | Msa0061990:intron | 30.0% | |
| TGGTTGGAATTTATTTACCA+AGG | - | chr1_2:21047594-21047613 | Msa0061990:intron | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+CGG | - | chr1_2:21047613-21047632 | Msa0061990:intron | 30.0% |
| GAAACTTCTAAATCTGTAGA+AGG | + | chr1_2:21047843-21047862 | None:intergenic | 30.0% | |
| TGCGTAATAGTTAATCATAC+CGG | + | chr1_2:21047915-21047934 | None:intergenic | 30.0% | |
| TAGATAGATGGATGTATGAA+TGG | - | chr1_2:21047975-21047994 | Msa0061990:intron | 30.0% | |
| !!! | ACCTGATGATTTTTTTGAGT+AGG | - | chr1_2:21048077-21048096 | Msa0061990:intron | 30.0% |
| AGAATGTCGTGAAAACTTTA+TGG | - | chr1_2:21048105-21048124 | Msa0061990:intron | 30.0% | |
| AGCAGCATCATAATAATCTT+TGG | - | chr1_2:21048352-21048371 | Msa0061990:intron | 30.0% | |
| TACCGAATGGTAACTAAATA+GGG | + | chr1_2:21048419-21048438 | None:intergenic | 30.0% | |
| ATACCGAATGGTAACTAAAT+AGG | + | chr1_2:21048420-21048439 | None:intergenic | 30.0% | |
| ACTCACGAAGTTGAATAGTT+TGG | + | chr1_2:21045222-21045241 | None:intergenic | 35.0% | |
| !! | CTTTGTTAGTTTGTTTGGTG+AGG | + | chr1_2:21045352-21045371 | None:intergenic | 35.0% |
| !!! | CTTGAGAGGGTTATTTTTCA+GGG | + | chr1_2:21045393-21045412 | None:intergenic | 35.0% |
| TGTACAATGAAATGGTCTAG+TGG | + | chr1_2:21045458-21045477 | None:intergenic | 35.0% | |
| GCTCATGTTTATAGCTTCTA+GGG | - | chr1_2:21045515-21045534 | Msa0061990:intron | 35.0% | |
| CTCATGTTTATAGCTTCTAG+GGG | - | chr1_2:21045516-21045535 | Msa0061990:intron | 35.0% | |
| ! | ATTTTTGCTGGTAGACCTAA+AGG | + | chr1_2:21045636-21045655 | None:intergenic | 35.0% |
| TTTAGGTCTACCAGCAAAAA+TGG | - | chr1_2:21045635-21045654 | Msa0061990:intron | 35.0% | |
| TTAGGTCTACCAGCAAAAAT+GGG | - | chr1_2:21045636-21045655 | Msa0061990:intron | 35.0% | |
| CATACATTGTTCTTGACAAC+CGG | - | chr1_2:21045755-21045774 | Msa0061990:intron | 35.0% | |
| TCGGTGACAAAAATTTAGGT+GGG | + | chr1_2:21046004-21046023 | None:intergenic | 35.0% | |
| TTCGGTGACAAAAATTTAGG+TGG | + | chr1_2:21046005-21046024 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr1_2:21046163-21046182 | None:intergenic | 35.0% | |
| AGACTCATTTGGAAGTCTAA+GGG | + | chr1_2:21046170-21046189 | None:intergenic | 35.0% | |
| ! | TCCCTTCTTGTTTACAAATC+TGG | + | chr1_2:21046393-21046412 | None:intergenic | 35.0% |
| ! | TTGACACAATTTTATGCCCA+AGG | - | chr1_2:21047354-21047373 | Msa0061990:CDS | 35.0% |
| GAATACTTGAACGAGTTCAA+AGG | - | chr1_2:21047484-21047503 | Msa0061990:CDS | 35.0% | |
| TGATGAAGATAGAACTTGGA+AGG | - | chr1_2:21047525-21047544 | Msa0061990:intron | 35.0% | |
| AGAAGTTCTATTGTGAATGG+TGG | - | chr1_2:21047574-21047593 | Msa0061990:intron | 35.0% | |
| !! | GACTTGCAAGTTATTTTCCT+TGG | + | chr1_2:21047614-21047633 | None:intergenic | 35.0% |
| TCAAGCCCTAAAAAATTGCA+AGG | - | chr1_2:21047712-21047731 | Msa0061990:intron | 35.0% | |
| GCGTAATAGTTAATCATACC+GGG | + | chr1_2:21047914-21047933 | None:intergenic | 35.0% | |
| TAGATCGATCGATAGATAGA+TGG | - | chr1_2:21047963-21047982 | Msa0061990:intron | 35.0% | |
| GCCTACTCAAAAAAATCATC+AGG | + | chr1_2:21048081-21048100 | None:intergenic | 35.0% | |
| AGCATAGCAATAACAAAGCA+TGG | + | chr1_2:21048301-21048320 | None:intergenic | 35.0% | |
| TGCCCTATTTAGTTACCATT+CGG | - | chr1_2:21048414-21048433 | Msa0061990:CDS | 35.0% | |
| AAGAAACATTGCATACCGAA+TGG | + | chr1_2:21048432-21048451 | None:intergenic | 35.0% | |
| TTCCCTTATCATGACTTCCA+CGG | + | chr1_2:21045189-21045208 | None:intergenic | 40.0% | |
| ! | TGAGTGTTCTTACTAGCTCT+TGG | + | chr1_2:21045252-21045271 | None:intergenic | 40.0% |
| ! | GAAATGGTACTTGTTGAGGA+TGG | + | chr1_2:21045321-21045340 | None:intergenic | 40.0% |
| !!! | GCTTGAGAGGGTTATTTTTC+AGG | + | chr1_2:21045394-21045413 | None:intergenic | 40.0% |
| GGCTCATGTTTATAGCTTCT+AGG | - | chr1_2:21045514-21045533 | Msa0061990:intron | 40.0% | |
| GTAAAGCCACTAAAGCCTTT+AGG | - | chr1_2:21045618-21045637 | Msa0061990:intron | 40.0% | |
| ACCTAAGCAAGCTAGATATG+TGG | + | chr1_2:21045847-21045866 | None:intergenic | 40.0% | |
| CAGACTCATTTGGAAGTCTA+AGG | + | chr1_2:21046171-21046190 | None:intergenic | 40.0% | |
| !! | AAAATGTTTTGGGCACAACG+TGG | - | chr1_2:21046196-21046215 | Msa0061990:intron | 40.0% |
| ! | CACAACGTGGTGATGATATT+TGG | - | chr1_2:21046209-21046228 | Msa0061990:intron | 40.0% |
| TGTAAACAAGAAGGGAGTGA+TGG | - | chr1_2:21046397-21046416 | Msa0061990:intron | 40.0% | |
| GCTGGAGTAGCAATATCAAT+CGG | + | chr1_2:21046442-21046461 | None:intergenic | 40.0% | |
| TCAAGCCAACAAAAAGTCTC+AGG | - | chr1_2:21046511-21046530 | Msa0061990:intron | 40.0% | |
| ! | ACTTGCCTGAGACTTTTTGT+TGG | + | chr1_2:21046519-21046538 | None:intergenic | 40.0% |
| TTTGCAGGTACTAACAAAGG+AGG | - | chr1_2:21047044-21047063 | Msa0061990:intron | 40.0% | |
| TTTGCAGGTACTAACAAAGG+AGG | - | chr1_2:21047044-21047063 | Msa0061990:intron | 40.0% | |
| TCAAAGGGATTGCAAGCATT+AGG | - | chr1_2:21047500-21047519 | Msa0061990:CDS | 40.0% | |
| CAAAGGGATTGCAAGCATTA+GGG | - | chr1_2:21047501-21047520 | Msa0061990:CDS | 40.0% | |
| !! | GGGTTGATGAAGATAGAACT+TGG | - | chr1_2:21047521-21047540 | Msa0061990:intron | 40.0% |
| GTTCTATTGTGAATGGTGGT+TGG | - | chr1_2:21047578-21047597 | Msa0061990:intron | 40.0% | |
| ! | CTTTGAGAATTCCTTGTACC+CGG | - | chr1_2:21047893-21047912 | Msa0061990:intron | 40.0% |
| AGTTAATCATACCGGGTACA+AGG | + | chr1_2:21047907-21047926 | None:intergenic | 40.0% | |
| GTCACAATCTGTATGCAAGT+TGG | - | chr1_2:21048147-21048166 | Msa0061990:intron | 40.0% | |
| ! | AATGGTGGTGTGCTGTTGAA+GGG | + | chr1_2:21045158-21045177 | None:intergenic | 45.0% |
| ! | GGTAGACCTAAAGGCTTTAG+TGG | + | chr1_2:21045627-21045646 | None:intergenic | 45.0% |
| !! | GCCACATATCTAGCTTGCTT+AGG | - | chr1_2:21045843-21045862 | Msa0061990:intron | 45.0% |
| TGTGCATGCAGATGATACCA+AGG | - | chr1_2:21046101-21046120 | Msa0061990:intron | 45.0% | |
| ! | CAAAGGAGGCATGACTAAGA+AGG | - | chr1_2:21047260-21047279 | Msa0061990:CDS | 45.0% |
| TTCTATTTCCCGAGCTAGAG+AGG | - | chr1_2:21047687-21047706 | Msa0061990:intron | 45.0% | |
| ! | GAATGGTGGTGTGCTGTTGA+AGG | + | chr1_2:21045159-21045178 | None:intergenic | 50.0% |
| TATCATGACTTCCACGGCCA+TGG | + | chr1_2:21045183-21045202 | None:intergenic | 50.0% | |
| TGGCCGTGGAAGTCATGATA+AGG | - | chr1_2:21045183-21045202 | Msa0061990:CDS | 50.0% | |
| GGCCGTGGAAGTCATGATAA+GGG | - | chr1_2:21045184-21045203 | Msa0061990:CDS | 50.0% | |
| ! | TAGTGGCTTTACCCTCGAGT+CGG | + | chr1_2:21045610-21045629 | None:intergenic | 50.0% |
| TTTGCACGGTCGCTTAGATG+TGG | - | chr1_2:21046250-21046269 | Msa0061990:intron | 50.0% | |
| ACTCCAGCTGCTACACTTCA+AGG | - | chr1_2:21046454-21046473 | Msa0061990:intron | 50.0% | |
| CTCCAGCTGCTACACTTCAA+GGG | - | chr1_2:21046455-21046474 | Msa0061990:intron | 50.0% | |
| ! | GCTTGATTCCTCTCTAGCTC+GGG | + | chr1_2:21047698-21047717 | None:intergenic | 50.0% |
| GGCTTGATTCCTCTCTAGCT+CGG | + | chr1_2:21047699-21047718 | None:intergenic | 50.0% | |
| CAGCACACCACCATTCACCA+TGG | - | chr1_2:21045163-21045182 | Msa0061990:CDS | 55.0% | |
| ACTTCCACGGCCATGGTGAA+TGG | + | chr1_2:21045176-21045195 | None:intergenic | 55.0% | |
| !! | AAATCATCAGGGCCGACTCG+AGG | - | chr1_2:21045595-21045614 | Msa0061990:intron | 55.0% |
| !! | AATCATCAGGGCCGACTCGA+GGG | - | chr1_2:21045596-21045615 | Msa0061990:intron | 55.0% |
| GTCCCTTGAAGTGTAGCAGC+TGG | + | chr1_2:21046460-21046479 | None:intergenic | 55.0% | |
| ACCACCATTCACCATGGCCG+TGG | - | chr1_2:21045169-21045188 | Msa0061990:CDS | 60.0% | |
| TCCACGGCCATGGTGAATGG+TGG | + | chr1_2:21045173-21045192 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21045151 | 21048499 | 21045151 | ID=Msa0061990;Name=Msa0061990 |
| chr1_2 | mRNA | 21045151 | 21048499 | 21045151 | ID=Msa0061990-mRNA-1;Parent=Msa0061990;Name=Msa0061990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|0.28|0.12|8|0|315 |
| chr1_2 | exon | 21048392 | 21048499 | 21048392 | ID=Msa0061990-mRNA-1:exon:7849;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21047316 | 21047538 | 21047316 | ID=Msa0061990-mRNA-1:exon:7848;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21047125 | 21047306 | 21047125 | ID=Msa0061990-mRNA-1:exon:7847;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21046264 | 21046368 | 21046264 | ID=Msa0061990-mRNA-1:exon:7846;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21046128 | 21046190 | 21046128 | ID=Msa0061990-mRNA-1:exon:7845;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21045917 | 21046103 | 21045917 | ID=Msa0061990-mRNA-1:exon:7844;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21045873 | 21045878 | 21045873 | ID=Msa0061990-mRNA-1:exon:7843;Parent=Msa0061990-mRNA-1 |
| chr1_2 | exon | 21045151 | 21045224 | 21045151 | ID=Msa0061990-mRNA-1:exon:7842;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21048392 | 21048499 | 21048392 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21047316 | 21047538 | 21047316 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21047125 | 21047306 | 21047125 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21046264 | 21046368 | 21046264 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21046128 | 21046190 | 21046128 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21045917 | 21046103 | 21045917 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21045873 | 21045878 | 21045873 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| chr1_2 | CDS | 21045151 | 21045224 | 21045151 | ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
