AlfalfaGEDB | Msa0061990

M. sativa cultivar zhongmu-4 / Msa0061990

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0061990	XP_024630307.1	80.435	276	31	3	37	289	5	280	3.03e-148	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0061990	sp\|Q8RYD1\|REM16_ARATH	25.926	324	190	14	15	294	18	335	3.67e-12	69.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0061990	A0A072VFY6	85.714	175	22	1	1	172	1	175	5.28e-107	319

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TFs/TRs:

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Gene ID	Type	Classification
Msa0061990	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0061990	MtrunA17_Chr1g0163101	74.706	170	36	3	7	172	2	168	9.87e-89	263
Msa0061990	MtrunA17_Chr1g0162161	84.892	139	18	1	37	172	3	141	6.13e-84	250
Msa0061990	MtrunA17_Chr1g0163131	45.183	301	130	5	10	276	6	305	5.70e-80	245
Msa0061990	MtrunA17_Chr1g0163081	73.913	138	28	3	37	171	5	137	9.00e-66	203
Msa0061990	MtrunA17_Chr1g0163251	41.754	285	133	5	31	289	14	291	4.87e-62	202
Msa0061990	MtrunA17_Chr6g0476181	64.286	154	30	3	37	170	1	149	3.18e-61	192
Msa0061990	MtrunA17_Chr1g0162151	73.826	149	21	3	170	310	3	141	1.09e-60	192
Msa0061990	MtrunA17_Chr1g0163231	43.617	282	127	9	22	280	9	281	9.30e-60	193
Msa0061990	MtrunA17_Chr1g0163261	39.661	295	144	9	22	290	9	295	3.14e-59	192
Msa0061990	MtrunA17_Chr1g0163121	70.000	130	32	3	36	162	9	134	3.38e-57	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0061990	AT4G33280.1	25.926	324	190	14	15	294	18	335	3.74e-13	69.7

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Find 49 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGATTCTTATCAT+TGG	0.358112	1_2:+21046306	None:intergenic
AACAGAAGTTCTATTGTGAA+TGG	0.573160	1_2:-21046057	Msa0061990:CDS
AACCAGATTTGTAAACAAGA+AGG	0.479388	1_2:-21047240	Msa0061990:CDS
AAGAAACATTGCATACCGAA+TGG	0.638200	1_2:+21045199	None:intergenic
AAGGAAAATAACTTGCAAGT+CGG	0.656533	1_2:-21046015	Msa0061990:CDS
AATACTTGAACGAGTTCAAA+GGG	0.491876	1_2:-21046143	Msa0061990:CDS
AATGGTGGTGTGCTGTTGAA+GGG	0.587983	1_2:+21048473	None:intergenic
ACCACCATTCACCATGGCCG+TGG	0.523585	1_2:-21048459	Msa0061990:CDS
ACCAGATTTGTAAACAAGAA+GGG	0.569287	1_2:-21047239	Msa0061990:CDS
ACTCACGAAGTTGAATAGTT+TGG	0.408216	1_2:+21048409	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTGAGGAAATAAAAGAAA+TGG	+	chr1_2:21045337-21045356	None:intergenic	30.0%
TGATATAACAAAGCTTGAGA+GGG	+	chr1_2:21045406-21045425	None:intergenic	30.0%
ATGATATAACAAAGCTTGAG+AGG	+	chr1_2:21045407-21045426	None:intergenic	30.0%
GCTGAATATGTACAATGAAA+TGG	+	chr1_2:21045466-21045485	None:intergenic	30.0%
AATTTCTAATCATTGCTTGG+AGG	-	chr1_2:21045792-21045811	Msa0061990:intron	30.0%
TGATAGACTTAAAATGTGGA+TGG	-	chr1_2:21045876-21045895	Msa0061990:intron	30.0%
GATAGACTTAAAATGTGGAT+GGG	-	chr1_2:21045877-21045896	Msa0061990:intron	30.0%
ATAGACTTAAAATGTGGATG+GGG	-	chr1_2:21045878-21045897	Msa0061990:intron	30.0%
GCAAAATATGTTTGGATCAT+GGG	+	chr1_2:21045909-21045928	None:intergenic	30.0%
AGCAAAATATGTTTGGATCA+TGG	+	chr1_2:21045910-21045929	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	21045151	21048499	21045151	ID=Msa0061990;Name=Msa0061990
chr1_2	mRNA	21045151	21048499	21045151	ID=Msa0061990-mRNA-1;Parent=Msa0061990;Name=Msa0061990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|0.75\|0.28\|0.12\|8\|0\|315
chr1_2	exon	21048392	21048499	21048392	ID=Msa0061990-mRNA-1:exon:7849;Parent=Msa0061990-mRNA-1
chr1_2	exon	21047316	21047538	21047316	ID=Msa0061990-mRNA-1:exon:7848;Parent=Msa0061990-mRNA-1
chr1_2	exon	21047125	21047306	21047125	ID=Msa0061990-mRNA-1:exon:7847;Parent=Msa0061990-mRNA-1
chr1_2	exon	21046264	21046368	21046264	ID=Msa0061990-mRNA-1:exon:7846;Parent=Msa0061990-mRNA-1
chr1_2	exon	21046128	21046190	21046128	ID=Msa0061990-mRNA-1:exon:7845;Parent=Msa0061990-mRNA-1
chr1_2	exon	21045917	21046103	21045917	ID=Msa0061990-mRNA-1:exon:7844;Parent=Msa0061990-mRNA-1
chr1_2	exon	21045873	21045878	21045873	ID=Msa0061990-mRNA-1:exon:7843;Parent=Msa0061990-mRNA-1
chr1_2	exon	21045151	21045224	21045151	ID=Msa0061990-mRNA-1:exon:7842;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21048392	21048499	21048392	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21047316	21047538	21047316	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21047125	21047306	21047125	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21046264	21046368	21046264	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21046128	21046190	21046128	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21045917	21046103	21045917	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21045873	21045878	21045873	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1
chr1_2	CDS	21045151	21045224	21045151	ID=Msa0061990-mRNA-1:cds;Parent=Msa0061990-mRNA-1

Gene Sequence

>Msa0061990

ATGTCCCTTCAACAGCACACCACCATTCACCATGGCCGTGGAAGTCATGATAAGGGAATGCATTTCTACCAAACTATTCAACTTCGTGAGTTGCAACACCAAGAGCTAATGATACCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTGAGTGTAAAATGTTTTGGGCACAACGTGGTGATGATATTTGGCTTATGAATTGGAAAAAATTTGCACGGTCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAAAATCGACTATTCAAGTATGAAATGCAACGACGACCAAAATTCTAACCAGATTTGTAAACAAGAAGGGAGTGATGGTGATGATTGTGTTGAGATTCCGATTGATATTGCTACTCCAGCTGCTACACTTCAAGGGACAAACATTAACAAGAGAAAAATTAATATGAATTCAAGCCAACAAAAAGCTAAGAAATGTTCAATAACTGAAGCAAATAATAAGAAATCCAATGATAAGAATCCAAGTTTTGAACTTAAATTGACACAATTTTATGCCCAAGGAAAATTATTTAGAATACCAAGTAAGTTTTCAAGAGAATACTTGAACGAGTTCAAAGGGATTGCAAGCATTAGGGTGAATGTGAAGTTTGATTATGCAAACAGAAGTTCTATTGTGAATGGTGGTTGGAATTTATTTACCAAGGAAAATAACTTGCAAGTCGGCGATGTGTGTAAATTTGAGATGACTCGATCTGAGCCTCTTTCTTTTAATATTTCTATTTCCCGAGCTAGAGAGGAATCAAGCCCTAAAAAATTGCAAGTTTGTGTTACCATTCGGTATGCAATGTTTCTTGTTGATAAGTTTAGGAGCATATGCTTTATTCTTAAGTCTGCTACTTAG

Protein sequence

>Msa0061990

MSLQQHTTIHHGRGSHDKGMHFYQTIQLRELQHQELMIPRNFVERYWKDVSNPISLRLPNESECKMFWAQRGDDIWLMNWKKFARSLRCGDLLVFQYKGGSDFHVIILDDKIDYSSMKCNDDQNSNQICKQEGSDGDDCVEIPIDIATPAATLQGTNINKRKINMNSSQQKAKKCSITEANNKKSNDKNPSFELKLTQFYAQGKLFRIPSKFSREYLNEFKGIASIRVNVKFDYANRSSIVNGGWNLFTKENNLQVGDVCKFEMTRSEPLSFNISISRAREESSPKKLQVCVTIRYAMFLVDKFRSICFILKSAT*