AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062140 MtrunA17_Chr1g0162411 70.656 259 35 3 1 233 155 398 6.69e-97 291
Msa0062140 MtrunA17_Chr1g0162441 43.624 298 87 8 1 269 158 403 7.11e-48 164
Msa0062140 MtrunA17_Chr4g0033961 45.550 191 69 6 88 268 233 398 1.45e-39 142
Msa0062140 MtrunA17_Chr1g0162431 69.811 53 16 0 211 263 5 57 4.35e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062140 AT1G49480.3 44.578 166 67 5 119 261 61 224 8.65e-34 122
Msa0062140 AT1G49480.1 44.578 166 67 5 119 261 61 224 8.65e-34 122
Msa0062140 AT1G49480.2 44.578 166 67 5 119 261 61 224 8.65e-34 122
Msa0062140 AT3G18990.1 41.304 184 83 5 101 261 158 339 1.68e-31 119
Msa0062140 AT3G18990.2 41.209 182 82 5 101 259 158 337 1.46e-30 117

Find 112 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTATAAATTTGGTGAAAT+TGG 0.054465 1_2:+21305491 Msa0062140:five_prime_UTR
GCAAATTTGAAGGGTGTTTC+AGG 0.187865 1_2:+21311307 Msa0062140:CDS
GCTATAAATTTGGTGAAATT+GGG 0.256472 1_2:+21305492 Msa0062140:five_prime_UTR
GTTATATAATATAACATGAT+AGG 0.259067 1_2:-21311896 None:intergenic
TTTACACAAGAGAACGGTTT+AGG 0.281466 1_2:+21311427 Msa0062140:CDS
TATCGACTCCTTTGATTTCC+TGG 0.281523 1_2:+21308617 Msa0062140:five_prime_UTR
ATTCTCTAGTTTATTCAGTT+TGG 0.286188 1_2:+21311648 Msa0062140:three_prime_UTR
CAGTATTTGCCTACCAGATT+TGG 0.288300 1_2:+21311283 Msa0062140:intron
CTCCTTTGATTTCCTGGGTT+CGG 0.300089 1_2:+21308623 Msa0062140:five_prime_UTR
TGACTTAATAGCTATAAATT+TGG 0.305250 1_2:+21305482 None:intergenic
CTTCAAATTTGCTCCAAATC+TGG 0.314432 1_2:-21311296 None:intergenic
CCAACAAAGACAAGAAAATA+AGG 0.331796 1_2:+21308728 Msa0062140:CDS
TCTTGCAGACGCACGTTCAT+AGG 0.341018 1_2:-21311047 None:intergenic
TGCTTAGATTGAAGGGTTGT+TGG 0.371314 1_2:-21305662 None:intergenic
GTCGCAACTGTCACTATTCC+TGG 0.373209 1_2:+21308346 Msa0062140:five_prime_UTR
CTGGCGTCTAGGATTGAAAA+AGG 0.378642 1_2:+21308378 Msa0062140:five_prime_UTR
TTACACAAGAGAACGGTTTA+GGG 0.383205 1_2:+21311428 Msa0062140:CDS
TTGAAAGTTGAAAACTTTGA+AGG 0.393967 1_2:-21305575 None:intergenic
TTTATTCAACGCTACTCAAT+TGG 0.396344 1_2:+21308439 Msa0062140:five_prime_UTR
CAAGGATTCTGCTGGATGTA+TGG 0.411184 1_2:+21308677 Msa0062140:exon
CTCTTACTTCTGAGTGATCC+TGG 0.418604 1_2:+21311624 Msa0062140:three_prime_UTR
CAAGCTATGTTGCATAGGTA+TGG 0.423542 1_2:-21311993 None:intergenic
AACCCTTCAATCTAAGCAAT+TGG 0.424880 1_2:+21305667 Msa0062140:five_prime_UTR
GCATTGTGAGAGAATGAGAT+TGG 0.425049 1_2:-21305607 None:intergenic
TTACCAATTGCTTAGATTGA+AGG 0.430305 1_2:-21305670 None:intergenic
ATCGACTCCTTTGATTTCCT+GGG 0.439513 1_2:+21308618 Msa0062140:five_prime_UTR
CAAGAAAACTTCAAGAAAGA+AGG 0.440243 1_2:+21310672 Msa0062140:CDS
CTATTCCTGGAGGCACCGTC+TGG 0.446768 1_2:+21308359 Msa0062140:five_prime_UTR
TACTTTGTTTCGTCTAAAAG+AGG 0.450484 1_2:+21311507 Msa0062140:CDS
ATAATGATAGTCTTCATAGA+AGG 0.452489 1_2:-21308574 None:intergenic
AGAATGAGCTTGTGGAAGGA+AGG 0.453473 1_2:-21305638 None:intergenic
GTGTAAATTCGTACCATCCT+TGG 0.456711 1_2:-21311411 None:intergenic
CTATAAATTTGGTGAAATTG+GGG 0.458614 1_2:+21305493 Msa0062140:five_prime_UTR
AATGCACCAGTAGGGTTTGA+AGG 0.471364 1_2:-21308648 None:intergenic
TCATAGAAGGCTCTTCAGTC+CGG 0.473786 1_2:-21308561 None:intergenic
GATACTTTCTATGTCCATAC+CGG 0.474003 1_2:+21311677 Msa0062140:three_prime_UTR
CAGATTTGGAGCAAATTTGA+AGG 0.476313 1_2:+21311297 Msa0062140:CDS
GTCCATACCGGGTACGCGTA+CGG 0.483203 1_2:+21311689 Msa0062140:three_prime_UTR
TGCTTTGCAATGCACCAGTA+GGG 0.484811 1_2:-21308656 None:intergenic
GGAGGCACCGTCTGGCGTCT+AGG 0.485912 1_2:+21308367 Msa0062140:five_prime_UTR
CTAACGCGGTGCTGCAAGTG+AGG 0.494100 1_2:-21311536 None:intergenic
TTATATAATATAACATGATA+GGG 0.495380 1_2:-21311895 None:intergenic
CAACGCTACTCAATTGGCAT+TGG 0.496965 1_2:+21308445 Msa0062140:five_prime_UTR
TGGGTACAGGTACGAGATTA+CGG 0.497721 1_2:-21311973 None:intergenic
TACCAATTGCTTAGATTGAA+GGG 0.513266 1_2:-21305669 None:intergenic
AGAGAACGGTTTAGGGGAAG+GGG 0.514068 1_2:+21311435 Msa0062140:CDS
TTGTGGAACTGCAGGTGCAC+AGG 0.514227 1_2:+21309050 Msa0062140:intron
TTGTGGAACTGCAGGTGCAC+AGG 0.514227 1_2:+21309422 Msa0062140:intron
TTGTGGAACTGCAGGTGCAC+AGG 0.514227 1_2:+21310603 Msa0062140:intron
TGTTTCCTCAGAAAATTATC+CGG 0.517233 1_2:-21308304 None:intergenic
TGTCAGATGAAGAAAGAGAA+AGG 0.518068 1_2:+21311083 Msa0062140:CDS
TACCGTACGCGTACCCGGTA+TGG 0.521278 1_2:-21311691 None:intergenic
AGACGCCAGACGGTGCCTCC+AGG 0.525400 1_2:-21308364 None:intergenic
AAGAGAAAGGGCAATGAATG+AGG 0.525817 1_2:+21311096 Msa0062140:CDS
AAGAAAACTTCAAGAAAGAA+GGG 0.528573 1_2:+21310673 Msa0062140:CDS
AAGAGAACGGTTTAGGGGAA+GGG 0.530709 1_2:+21311434 Msa0062140:CDS
TTGCAAAGCAAGGATTCTGC+TGG 0.532722 1_2:+21308669 Msa0062140:five_prime_UTR
AACTTGCAACACTACAACTC+TGG 0.533256 1_2:-21311485 None:intergenic
CAATCCAAGCTATGTTGCAT+AGG 0.534379 1_2:-21311998 None:intergenic
TTGCTTTGCAATGCACCAGT+AGG 0.535055 1_2:-21308657 None:intergenic
TTTGACTGAAAAGCAGAGAA+GGG 0.535951 1_2:+21305529 Msa0062140:five_prime_UTR
CAAGAGAACGGTTTAGGGGA+AGG 0.536429 1_2:+21311433 Msa0062140:CDS
TGTTGGCTATGATTCTCCGC+TGG 0.543021 1_2:-21308711 None:intergenic
GGTTTGAAGGTGCCGAACCC+AGG 0.546023 1_2:-21308635 None:intergenic
AGCCATCCACAAAACAAATA+CGG 0.548306 1_2:-21308408 None:intergenic
AGATTTGGAGCAAATTTGAA+GGG 0.548691 1_2:+21311298 Msa0062140:CDS
GTTTGACTGAAAAGCAGAGA+AGG 0.553340 1_2:+21305528 Msa0062140:five_prime_UTR
TCGGCACCTTCAAACCCTAC+TGG 0.553532 1_2:+21308642 Msa0062140:five_prime_UTR
GTCAGATGAAGAAAGAGAAA+GGG 0.559696 1_2:+21311084 Msa0062140:CDS
GCTGCCTTGATGACAAAGGC+CGG 0.563135 1_2:+21311377 Msa0062140:CDS
ATGATTCAACAATGAGAAGC+CGG 0.564717 1_2:+21308542 Msa0062140:five_prime_UTR
AAGCTATGTTGCATAGGTAT+GGG 0.564739 1_2:-21311992 None:intergenic
TATAAATTTGGTGAAATTGG+GGG 0.572057 1_2:+21305494 Msa0062140:five_prime_UTR
TACTATTCACATACGAAGGA+AGG 0.576020 1_2:+21308476 Msa0062140:five_prime_UTR
TGTTGCATAGGTATGGGTAC+AGG 0.576281 1_2:-21311986 None:intergenic
ACGCCACTGTTTCTCACCAT+CGG 0.581074 1_2:-21311350 None:intergenic
TTGTGGAAGGAAGGAAGAAG+AGG 0.581638 1_2:-21305629 None:intergenic
CAGTTGCGACAGTCGAAAGT+TGG 0.587358 1_2:-21308333 None:intergenic
ATACTTTCTATGTCCATACC+GGG 0.587476 1_2:+21311678 Msa0062140:three_prime_UTR
CATAGTTTAACTCAGTAGTA+CGG 0.587876 1_2:-21308522 None:intergenic
ATTCCGCTTCAGACATCCGA+TGG 0.591154 1_2:+21311334 Msa0062140:CDS
CAAGAAAGAAGCGGAAATCG+CGG 0.592113 1_2:+21308766 Msa0062140:CDS
CAAGAAAGAAGCGGAAATCG+CGG 0.592113 1_2:+21309130 Msa0062140:CDS
TACTGGTGCATTGCAAAGCA+AGG 0.593014 1_2:+21308659 Msa0062140:five_prime_UTR
AAATTTGCTCCAAATCTGGT+AGG 0.596789 1_2:-21311292 None:intergenic
TACGAATTTACACAAGAGAA+CGG 0.605728 1_2:+21311421 Msa0062140:CDS
CTCCACTGAAAATGATGAGG+AGG 0.606101 1_2:+21309077 Msa0062140:CDS
CTCCACTGAAAATGATGAGG+AGG 0.606101 1_2:+21309449 Msa0062140:CDS
TGAATAAACTAGAGAATACC+AGG 0.606340 1_2:-21311642 None:intergenic
TTTCAATCCTAGACGCCAGA+CGG 0.606617 1_2:-21308374 None:intergenic
TGGAAGAATGAGCTTGTGGA+AGG 0.609929 1_2:-21305642 None:intergenic
AGAAAACTTCAAGAAAGAAG+CGG 0.610439 1_2:+21308757 Msa0062140:CDS
AGAAAACTTCAAGAAAGAAG+CGG 0.610439 1_2:+21309121 Msa0062140:CDS
AGAAAACTTCAAGAAAGAAG+CGG 0.610439 1_2:+21309493 Msa0062140:CDS
TTGTTGGAAGAATGAGCTTG+TGG 0.610517 1_2:-21305646 None:intergenic
TGCCGAACCCAGGAAATCAA+AGG 0.612101 1_2:-21308625 None:intergenic
ACGAGTACCGTACGCGTACC+CGG 0.614617 1_2:-21311696 None:intergenic
TCACCATCGGATGTCTGAAG+CGG 0.621327 1_2:-21311337 None:intergenic
TAACGCGGTGCTGCAAGTGA+GGG 0.625213 1_2:-21311535 None:intergenic
TTGACTGAAAAGCAGAGAAG+GGG 0.640302 1_2:+21305530 Msa0062140:five_prime_UTR
CATCCGATGGTGAGAAACAG+TGG 0.644228 1_2:+21311347 Msa0062140:CDS
AGCCTCCACTGAAAATGATG+AGG 0.645254 1_2:+21309074 Msa0062140:CDS
AGCCTCCACTGAAAATGATG+AGG 0.645254 1_2:+21309446 Msa0062140:CDS
GTTCGCTGCCTTGATGACAA+AGG 0.645710 1_2:+21311373 Msa0062140:CDS
TTACTACTATTCACATACGA+AGG 0.656130 1_2:+21308472 Msa0062140:five_prime_UTR
TACACAAGAGAACGGTTTAG+GGG 0.668422 1_2:+21311429 Msa0062140:CDS
CTCCACTGAAAATGACGAGG+AGG 0.686073 1_2:+21310630 Msa0062140:CDS
CAAGAAAGAAGGGAAAATCG+CGG 0.697880 1_2:+21310683 Msa0062140:CDS
AGCCTCCACTGAAAATGACG+AGG 0.698578 1_2:+21310627 Msa0062140:CDS
TATGGATCAACTGATACCAG+CGG 0.714314 1_2:+21308695 Msa0062140:exon
GGGTACGCGTACGGTACTCG+TGG 0.714655 1_2:+21311698 Msa0062140:three_prime_UTR
GCAACTGTCACTATTCCTGG+AGG 0.744071 1_2:+21308349 Msa0062140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTATATTAAATTTT+AGG + chr1_2:21306720-21306739 Msa0062140:intron 0.0%
!! TAATATAATAAAATCTCAAT+TGG - chr1_2:21306714-21306733 None:intergenic 10.0%
!!! TTATATTAAATTTTAGGTTT+TGG + chr1_2:21306726-21306745 Msa0062140:intron 10.0%
!! ATTAAATAAATAAATTGGTT+TGG - chr1_2:21308048-21308067 None:intergenic 10.0%
!! TCTCTATTAAATAAATAAAT+TGG - chr1_2:21308053-21308072 None:intergenic 10.0%
!!! AATTTTTTGATATTTTTCTT+TGG + chr1_2:21311212-21311231 Msa0062140:intron 10.0%
!! TTATATAATATAACATGATA+GGG - chr1_2:21311898-21311917 None:intergenic 10.0%
!!! TTTTTTAAAAATTAAGATAC+GGG - chr1_2:21311950-21311969 None:intergenic 10.0%
!! AAACAGAATAAAAAAATCAT+GGG - chr1_2:21305952-21305971 None:intergenic 15.0%
!! TAAACAGAATAAAAAAATCA+TGG - chr1_2:21305953-21305972 None:intergenic 15.0%
!!! ATTGAAGTTTATTTTTTGTT+TGG + chr1_2:21306161-21306180 Msa0062140:intron 15.0%
!! AGTGATATGAATTAAAATAT+AGG + chr1_2:21306663-21306682 Msa0062140:intron 15.0%
!! TATGAATTAAAATATAGGAT+TGG + chr1_2:21306668-21306687 Msa0062140:intron 15.0%
!!! CAAAAAAATAGTTTAAAATG+TGG - chr1_2:21309836-21309855 None:intergenic 15.0%
!!! CACATTTTAAACTATTTTTT+TGG + chr1_2:21309834-21309853 Msa0062140:intron 15.0%
!! TTGAAGTTTGAATAAAAATA+TGG + chr1_2:21310430-21310449 Msa0062140:intron 15.0%
!! AAAAAGTTGAAAATTAAAGT+TGG - chr1_2:21311832-21311851 None:intergenic 15.0%
!! GTTATATAATATAACATGAT+AGG - chr1_2:21311899-21311918 None:intergenic 15.0%
!! AAATCCAAACTTTATGAAAA+GGG - chr1_2:21305832-21305851 None:intergenic 20.0%
!! AAAATCCAAACTTTATGAAA+AGG - chr1_2:21305833-21305852 None:intergenic 20.0%
!!! CCTTTTCAATTTCAATTTTA+GGG - chr1_2:21306238-21306257 None:intergenic 20.0%
!!! ACCTTTTCAATTTCAATTTT+AGG - chr1_2:21306239-21306258 None:intergenic 20.0%
!!! TAAATTTTAGGTTTTGGATA+TGG + chr1_2:21306732-21306751 Msa0062140:intron 20.0%
!! AAGAAAAGGAAATTGAAATT+AGG + chr1_2:21306772-21306791 Msa0062140:intron 20.0%
!!! AGTTTATGTCTTTATTTTCA+TGG + chr1_2:21307086-21307105 Msa0062140:intron 20.0%
!!! AATATTATTTTCAATTGCAG+AGG + chr1_2:21308278-21308297 Msa0062140:intron 20.0%
!!! TATTTCACGTTTTCAAATTA+CGG + chr1_2:21308937-21308956 Msa0062140:intron 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_2:21309033-21309052 Msa0062140:intron 20.0%
!!! TATTTCACGTTTTCAAATTA+CGG + chr1_2:21308937-21308956 Msa0062140:intron 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_2:21309033-21309052 Msa0062140:intron 20.0%
!! TGTATAATTAAGAAAGTTGT+TGG - chr1_2:21309995-21310014 None:intergenic 20.0%
!! TTAATTATACAGAGAAAGAA+TGG + chr1_2:21310004-21310023 Msa0062140:intron 20.0%
!! CAAATTTGATTACTGAAAAA+TGG - chr1_2:21310163-21310182 None:intergenic 20.0%
!!! CATTTTTCAGTAATCAAATT+TGG + chr1_2:21310161-21310180 Msa0062140:intron 20.0%
!! ATTGCTTCTGATAAAAAAAT+TGG - chr1_2:21310300-21310319 None:intergenic 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_2:21309033-21309052 Msa0062140:intron 20.0%
!!! TATTTCACGTTTTCAAATTA+TGG + chr1_2:21308937-21308956 Msa0062140:intron 20.0%
!! CATAGAATAAATAGCAAAAA+TGG - chr1_2:21311728-21311747 None:intergenic 20.0%
!!! CATTTTTGCTATTTATTCTA+TGG + chr1_2:21311726-21311745 Msa0062140:three_prime_UTR 20.0%
!! AGCTATAAATTTGGTGAAAT+TGG + chr1_2:21305491-21305510 Msa0062140:five_prime_UTR 25.0%
!! GCTATAAATTTGGTGAAATT+GGG + chr1_2:21305492-21305511 Msa0062140:five_prime_UTR 25.0%
!! CTATAAATTTGGTGAAATTG+GGG + chr1_2:21305493-21305512 Msa0062140:five_prime_UTR 25.0%
!! TATAAATTTGGTGAAATTGG+GGG + chr1_2:21305494-21305513 Msa0062140:five_prime_UTR 25.0%
! TTGAAAGTTGAAAACTTTGA+AGG - chr1_2:21305578-21305597 None:intergenic 25.0%
! GAAAACAGAAACAAAAAACA+TGG - chr1_2:21305761-21305780 None:intergenic 25.0%
! AATCCAAACTTTATGAAAAG+GGG - chr1_2:21305831-21305850 None:intergenic 25.0%
!! CATAAAGTTTGGATTTTTGT+TGG + chr1_2:21305836-21305855 Msa0062140:intron 25.0%
!! AACTTGATGATCAAAATCAT+GGG - chr1_2:21305874-21305893 None:intergenic 25.0%
!! AAACTTGATGATCAAAATCA+TGG - chr1_2:21305875-21305894 None:intergenic 25.0%
!!! ATGATTTTGATCATCAAGTT+TGG + chr1_2:21305874-21305893 Msa0062140:intron 25.0%
!!! GATTTTTCAGAAGTTGTATT+TGG + chr1_2:21306041-21306060 Msa0062140:intron 25.0%
! ATCAAAAGAGTCAAATTCTA+GGG - chr1_2:21306087-21306106 None:intergenic 25.0%
! TTTGATCATAACATAACTCA+TGG + chr1_2:21306101-21306120 Msa0062140:intron 25.0%
! CCCTAAAATTGAAATTGAAA+AGG + chr1_2:21306235-21306254 Msa0062140:intron 25.0%
! ATGTGGCAAAAAAACATTAA+GGG + chr1_2:21306386-21306405 Msa0062140:intron 25.0%
!!! GTGTGCTGTTTTAAAAAAAA+AGG + chr1_2:21306584-21306603 Msa0062140:intron 25.0%
!!! CTGTTTTAAAAAAAAAGGAG+AGG + chr1_2:21306589-21306608 Msa0062140:intron 25.0%
! ATTGCATACAGAATAAGAAA+AGG + chr1_2:21306758-21306777 Msa0062140:intron 25.0%
!!! TAACTGTTGCAATTTTTTCT+TGG + chr1_2:21307128-21307147 Msa0062140:intron 25.0%
!!! TTGCTATCATATTGATTTCT+TGG + chr1_2:21307197-21307216 Msa0062140:intron 25.0%
! TTGGTAGAATTTATTGTCTT+GGG + chr1_2:21307216-21307235 Msa0062140:intron 25.0%
! TTAATATATGACACAGTGAA+CGG + chr1_2:21307257-21307276 Msa0062140:intron 25.0%
! AAATCCAAGTAGAATTTCAT+AGG - chr1_2:21307295-21307314 None:intergenic 25.0%
! ATTAACTACCGTTATGAATA+TGG - chr1_2:21307461-21307480 None:intergenic 25.0%
! CATTTGGCTAAAAATAAACT+AGG - chr1_2:21307549-21307568 None:intergenic 25.0%
!!! TTATTTTTAGCCAAATGAGA+TGG + chr1_2:21307552-21307571 Msa0062140:intron 25.0%
!!! TTTTTTCCTCTTTTTGATTC+TGG + chr1_2:21308194-21308213 Msa0062140:intron 25.0%
! TATGAGCATTTACTAACATT+TGG + chr1_2:21308249-21308268 Msa0062140:intron 25.0%
! ATAATGATAGTCTTCATAGA+AGG - chr1_2:21308577-21308596 None:intergenic 25.0%
!!! GACTATCATTATGTTTTTGA+AGG + chr1_2:21308585-21308604 Msa0062140:five_prime_UTR 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_2:21308828-21308847 Msa0062140:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_2:21308828-21308847 Msa0062140:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_2:21308828-21308847 Msa0062140:intron 25.0%
!! TATTTCACGTTTTCAAACTA+CGG + chr1_2:21309664-21309683 Msa0062140:intron 25.0%
!!! TAAACTATTTTTTTGGCTAC+CGG + chr1_2:21309841-21309860 Msa0062140:intron 25.0%
! TGTGCTCTATTTATTTGATT+TGG - chr1_2:21310132-21310151 None:intergenic 25.0%
! TCAGTAATCAAATTTGGATT+TGG + chr1_2:21310167-21310186 Msa0062140:intron 25.0%
!!! CTGTGATATAGGTTTTTTTA+TGG + chr1_2:21310225-21310244 Msa0062140:intron 25.0%
!!! GTTTGAGATTAATGTTCTTT+TGG + chr1_2:21310350-21310369 Msa0062140:intron 25.0%
! AAAACTAAAAACCTGATAAC+CGG - chr1_2:21310479-21310498 None:intergenic 25.0%
!!! GTTTTAAAAAAGTGATGATG+TGG + chr1_2:21310494-21310513 Msa0062140:intron 25.0%
! TCAAACACTCTTTCAATTAT+TGG - chr1_2:21310521-21310540 None:intergenic 25.0%
! AAGAAAACTTCAAGAAAGAA+GGG + chr1_2:21308756-21308775 Msa0062140:CDS 25.0%
! ATTGTCATCAGAATAATTTG+TGG + chr1_2:21310950-21310969 Msa0062140:intron 25.0%
!! ATTCTCTAGTTTATTCAGTT+TGG + chr1_2:21311648-21311667 Msa0062140:three_prime_UTR 25.0%
TACCAATTGCTTAGATTGAA+GGG - chr1_2:21305672-21305691 None:intergenic 30.0%
TTACCAATTGCTTAGATTGA+AGG - chr1_2:21305673-21305692 None:intergenic 30.0%
ACAGAAACAAAAAACATGGA+AGG - chr1_2:21305757-21305776 None:intergenic 30.0%
CTTTATGAAAAGGGGAATTA+GGG - chr1_2:21305823-21305842 None:intergenic 30.0%
ACTTTATGAAAAGGGGAATT+AGG - chr1_2:21305824-21305843 None:intergenic 30.0%
! ATTCCCCTTTTCATAAAGTT+TGG + chr1_2:21305825-21305844 Msa0062140:intron 30.0%
!! AATTTGATTCAGTGTTGCTT+AGG + chr1_2:21306012-21306031 Msa0062140:intron 30.0%
GATCAAAAGAGTCAAATTCT+AGG - chr1_2:21306088-21306107 None:intergenic 30.0%
!! TAAATGGAGCATTGGTTAAA+TGG - chr1_2:21306340-21306359 None:intergenic 30.0%
CATGTGGCAAAAAAACATTA+AGG + chr1_2:21306385-21306404 Msa0062140:intron 30.0%
CTTGGTAGAATTTATTGTCT+TGG + chr1_2:21307215-21307234 Msa0062140:intron 30.0%
!! TATTTGCTATGAACACTTGA+AGG + chr1_2:21307324-21307343 Msa0062140:intron 30.0%
ACGAATCTCCATATTCATAA+CGG + chr1_2:21307450-21307469 Msa0062140:intron 30.0%
AAGTCAAATACCATCTCATT+TGG - chr1_2:21307565-21307584 None:intergenic 30.0%
!! TGTTGCAATTCTTTGCTTTT+TGG + chr1_2:21307994-21308013 Msa0062140:intron 30.0%
!!! GTTGCAATTCTTTGCTTTTT+GGG + chr1_2:21307995-21308014 Msa0062140:intron 30.0%
TGTTTCCTCAGAAAATTATC+CGG - chr1_2:21308307-21308326 None:intergenic 30.0%
!! GATAATTTTCTGAGGAAACA+CGG + chr1_2:21308307-21308326 Msa0062140:five_prime_UTR 30.0%
!! ATAATTTTCTGAGGAAACAC+GGG + chr1_2:21308308-21308327 Msa0062140:five_prime_UTR 30.0%
TTTATTCAACGCTACTCAAT+TGG + chr1_2:21308439-21308458 Msa0062140:five_prime_UTR 30.0%
TTACTACTATTCACATACGA+AGG + chr1_2:21308472-21308491 Msa0062140:five_prime_UTR 30.0%
CATAGTTTAACTCAGTAGTA+CGG - chr1_2:21308525-21308544 None:intergenic 30.0%
!!! CCTTATTTTCTTGTCTTTGT+TGG - chr1_2:21308731-21308750 None:intergenic 30.0%
CCAACAAAGACAAGAAAATA+AGG + chr1_2:21308728-21308747 Msa0062140:CDS 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_2:21308757-21308776 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_2:21308757-21308776 Msa0062140:CDS 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_2:21309042-21309061 Msa0062140:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_2:21308757-21308776 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_2:21308757-21308776 Msa0062140:CDS 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_2:21309042-21309061 Msa0062140:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_2:21308757-21308776 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_2:21308757-21308776 Msa0062140:CDS 30.0%
! AGTTTAAAATGTGGATGACT+TGG - chr1_2:21309827-21309846 None:intergenic 30.0%
TCACTGTGTAAGTAAATAAC+CGG - chr1_2:21309863-21309882 None:intergenic 30.0%
! ATTAAGAAAGTTGTTGGTTG+TGG - chr1_2:21309989-21310008 None:intergenic 30.0%
TTTGTGAAGTTGAAGCTTAA+TGG - chr1_2:21310053-21310072 None:intergenic 30.0%
AACTTCACAAACTTGTCAAA+TGG + chr1_2:21310062-21310081 Msa0062140:intron 30.0%
ACTTCACAAACTTGTCAAAT+GGG + chr1_2:21310063-21310082 Msa0062140:intron 30.0%
TTCAAAGAACCTGCTTTAAT+TGG + chr1_2:21310089-21310108 Msa0062140:intron 30.0%
TCAAAGAACCTGCTTTAATT+GGG + chr1_2:21310090-21310109 Msa0062140:intron 30.0%
GCAGATGAGATAATTAAAGA+TGG + chr1_2:21310247-21310266 Msa0062140:intron 30.0%
! ATTAGTTTCATCATGAGAGA+TGG + chr1_2:21310377-21310396 Msa0062140:intron 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_2:21309042-21309061 Msa0062140:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_2:21308757-21308776 None:intergenic 30.0%
CAAGAAAACTTCAAGAAAGA+AGG + chr1_2:21308755-21308774 Msa0062140:CDS 30.0%
TATGCATCCCCTATATAAAT+AGG - chr1_2:21311173-21311192 None:intergenic 30.0%
TTTATATAGGGGATGCATAA+TGG + chr1_2:21311174-21311193 Msa0062140:intron 30.0%
! AGATTTGGAGCAAATTTGAA+GGG + chr1_2:21311298-21311317 Msa0062140:CDS 30.0%
TACGAATTTACACAAGAGAA+CGG + chr1_2:21311421-21311440 Msa0062140:CDS 30.0%
! TACTTTGTTTCGTCTAAAAG+AGG + chr1_2:21311507-21311526 Msa0062140:CDS 30.0%
!! CAGTTTTGTAATTGTCTATC+AGG - chr1_2:21311594-21311613 None:intergenic 30.0%
TGAATAAACTAGAGAATACC+AGG - chr1_2:21311645-21311664 None:intergenic 30.0%
TTTGACTGAAAAGCAGAGAA+GGG + chr1_2:21305529-21305548 Msa0062140:five_prime_UTR 35.0%
AACCCTTCAATCTAAGCAAT+TGG + chr1_2:21305667-21305686 Msa0062140:five_prime_UTR 35.0%
AGCAATTCAGATACAACTTG+TGG - chr1_2:21306274-21306293 None:intergenic 35.0%
! CCTGAACTCGTCAAATTTTA+TGG - chr1_2:21306311-21306330 None:intergenic 35.0%
CCATAAAATTTGACGAGTTC+AGG + chr1_2:21306308-21306327 Msa0062140:intron 35.0%
!! AAATGGACTAAATGGAGCAT+TGG - chr1_2:21307019-21307038 None:intergenic 35.0%
ATGCTCCATTTAGTCCATTT+AGG + chr1_2:21306348-21306367 Msa0062140:intron 35.0%
!! CATGACCTAAATGGACTAAA+TGG - chr1_2:21307011-21307030 None:intergenic 35.0%
CATTTAGTCCATTTAGGTCA+TGG + chr1_2:21306354-21306373 Msa0062140:intron 35.0%
TGTGGCAAAAAATCATCCAA+GGG - chr1_2:21306980-21306999 None:intergenic 35.0%
ATGTGGCAAAAAATCATCCA+AGG - chr1_2:21306981-21307000 None:intergenic 35.0%
TCTTGTATCCATGACCTAAA+TGG + chr1_2:21307002-21307021 Msa0062140:intron 35.0%
CATTTAGTCCATTTAGGTCA+TGG - chr1_2:21306354-21306373 None:intergenic 35.0%
!! CATGACCTAAATGGACTAAA+TGG + chr1_2:21307011-21307030 Msa0062140:intron 35.0%
ATGCTCCATTTAGTCCATTT+AGG - chr1_2:21306348-21306367 None:intergenic 35.0%
!! AAATGGACTAAATGGAGCAT+TGG + chr1_2:21307019-21307038 Msa0062140:intron 35.0%
!! AAATGGAGCATTGGCTAAAA+TGG + chr1_2:21307028-21307047 Msa0062140:intron 35.0%
ACCTGAACTCAAAATTGAAC+TGG + chr1_2:21307056-21307075 Msa0062140:intron 35.0%
CCTGAACTCAAAATTGAACT+GGG + chr1_2:21307057-21307076 Msa0062140:intron 35.0%
AACTCAAAATTGAACTGGGT+TGG + chr1_2:21307061-21307080 Msa0062140:intron 35.0%
GTGTGCTTGTGTGTTAATTT+CGG + chr1_2:21307602-21307621 Msa0062140:intron 35.0%
TGTGCTTGTGTGTTAATTTC+GGG + chr1_2:21307603-21307622 Msa0062140:intron 35.0%
TGTAGGAATTTGAGGATTTG+CGG - chr1_2:21307676-21307695 None:intergenic 35.0%
TTTGCAGATGTAGGAATTTG+AGG - chr1_2:21307684-21307703 None:intergenic 35.0%
!!! GCTTTTTCATTTGCAGATGT+AGG - chr1_2:21307693-21307712 None:intergenic 35.0%
AATGAAAAAGCTCTTCTCAC+TGG + chr1_2:21307702-21307721 Msa0062140:intron 35.0%
CAGAATTGTGCACAACATTA+CGG - chr1_2:21307880-21307899 None:intergenic 35.0%
!! CTTTTTGGGAGTGAACAATT+GGG + chr1_2:21308009-21308028 Msa0062140:intron 35.0%
!! TTTTTGGGAGTGAACAATTG+GGG + chr1_2:21308010-21308029 Msa0062140:intron 35.0%
!! AAATTGGTTTGGCCTTAGTA+TGG - chr1_2:21308037-21308056 None:intergenic 35.0%
AATGAGCCAGAATCAAAAAG+AGG - chr1_2:21308203-21308222 None:intergenic 35.0%
! TTTTCAATTGCAGAGGATTC+CGG + chr1_2:21308285-21308304 Msa0062140:intron 35.0%
!! TAATTTTCTGAGGAAACACG+GGG + chr1_2:21308309-21308328 Msa0062140:five_prime_UTR 35.0%
!!! AACCGTATTTGTTTTGTGGA+TGG + chr1_2:21308406-21308425 Msa0062140:five_prime_UTR 35.0%
AGCCATCCACAAAACAAATA+CGG - chr1_2:21308411-21308430 None:intergenic 35.0%
TACTATTCACATACGAAGGA+AGG + chr1_2:21308476-21308495 Msa0062140:five_prime_UTR 35.0%
ATGATTCAACAATGAGAAGC+CGG + chr1_2:21308542-21308561 Msa0062140:five_prime_UTR 35.0%
!! GGAGGCTTTTGGAAAATTAA+AGG - chr1_2:21310032-21310051 None:intergenic 35.0%
AGATGAATCCCAATTAAAGC+AGG - chr1_2:21310101-21310120 None:intergenic 35.0%
TGCTTTAATTGGGATTCATC+TGG + chr1_2:21310100-21310119 Msa0062140:intron 35.0%
!! AAGCAAACTTGCTGTGATAT+AGG + chr1_2:21310214-21310233 Msa0062140:intron 35.0%
!! GTTTTGTTGAGATTCGATTG+TGG + chr1_2:21310326-21310345 Msa0062140:intron 35.0%
CTCTCATGATGAAACTAATG+AGG - chr1_2:21310376-21310395 None:intergenic 35.0%
TGTTAGTAAACCAGTATAGC+CGG + chr1_2:21310457-21310476 Msa0062140:intron 35.0%
! GCATTGACATTTCAGATTGA+AGG + chr1_2:21310761-21310780 Msa0062140:intron 35.0%
! TCACGTTTTCAAATTATGGC+TGG + chr1_2:21310858-21310877 Msa0062140:intron 35.0%
! AGAATAATTTGTGGAACTGC+AGG + chr1_2:21310959-21310978 Msa0062140:intron 35.0%
TGTCAGATGAAGAAAGAGAA+AGG + chr1_2:21311083-21311102 Msa0062140:CDS 35.0%
GTCAGATGAAGAAAGAGAAA+GGG + chr1_2:21311084-21311103 Msa0062140:CDS 35.0%
! ACAAGACAGTAAGGATTAGT+TGG - chr1_2:21311136-21311155 None:intergenic 35.0%
! AAATTTGCTCCAAATCTGGT+AGG - chr1_2:21311295-21311314 None:intergenic 35.0%
! CTTCAAATTTGCTCCAAATC+TGG - chr1_2:21311299-21311318 None:intergenic 35.0%
! CAGATTTGGAGCAAATTTGA+AGG + chr1_2:21311297-21311316 Msa0062140:CDS 35.0%
!! ATCCTTGGCTTAACTTTTTC+CGG - chr1_2:21311399-21311418 None:intergenic 35.0%
TTTACACAAGAGAACGGTTT+AGG + chr1_2:21311427-21311446 Msa0062140:CDS 35.0%
TTACACAAGAGAACGGTTTA+GGG + chr1_2:21311428-21311447 Msa0062140:CDS 35.0%
!!! ATTTTTAGGTTGAGCTAACG+CGG - chr1_2:21311553-21311572 None:intergenic 35.0%
AGCTCAACCTAAAAATTAGC+TGG + chr1_2:21311557-21311576 Msa0062140:exon 35.0%
GCTCAACCTAAAAATTAGCT+GGG + chr1_2:21311558-21311577 Msa0062140:exon 35.0%
! AACTCTCCCAGCTAATTTTT+AGG - chr1_2:21311567-21311586 None:intergenic 35.0%
GATACTTTCTATGTCCATAC+CGG + chr1_2:21311677-21311696 Msa0062140:three_prime_UTR 35.0%
ATACTTTCTATGTCCATACC+GGG + chr1_2:21311678-21311697 Msa0062140:three_prime_UTR 35.0%
GTTTGACTGAAAAGCAGAGA+AGG + chr1_2:21305528-21305547 Msa0062140:five_prime_UTR 40.0%
TTGACTGAAAAGCAGAGAAG+GGG + chr1_2:21305530-21305549 Msa0062140:five_prime_UTR 40.0%
GCATTGTGAGAGAATGAGAT+TGG - chr1_2:21305610-21305629 None:intergenic 40.0%
TTGTTGGAAGAATGAGCTTG+TGG - chr1_2:21305649-21305668 None:intergenic 40.0%
TGCTTAGATTGAAGGGTTGT+TGG - chr1_2:21305665-21305684 None:intergenic 40.0%
!! AGCGATGGATTGGTATCTTA+CGG - chr1_2:21306533-21306552 None:intergenic 40.0%
TAATACAGTAGCAACAGCGA+TGG - chr1_2:21306548-21306567 None:intergenic 40.0%
CAAGATCGTGATTAGCAAGA+GGG + chr1_2:21306854-21306873 Msa0062140:intron 40.0%
AAGATCGTGATTAGCAAGAG+GGG + chr1_2:21306855-21306874 Msa0062140:intron 40.0%
TAATGTTAAATCCCAGCCCT+TGG + chr1_2:21306961-21306980 Msa0062140:intron 40.0%
CAAAAAATCATCCAAGGGCT+GGG - chr1_2:21306975-21306994 None:intergenic 40.0%
!!! CCCAGTTCAATTTTGAGTTC+AGG - chr1_2:21307060-21307079 None:intergenic 40.0%
GCTGCCTATGAAATTCTACT+TGG + chr1_2:21307288-21307307 Msa0062140:intron 40.0%
CAGGTGCGTTAACTTTAATC+GGG - chr1_2:21307641-21307660 None:intergenic 40.0%
CCAGGTGCGTTAACTTTAAT+CGG - chr1_2:21307642-21307661 None:intergenic 40.0%
CGATTAAAGTTAACGCACCT+GGG + chr1_2:21307640-21307659 Msa0062140:intron 40.0%
GATTAAAGTTAACGCACCTG+GGG + chr1_2:21307641-21307660 Msa0062140:intron 40.0%
GTTCTCTGTTACACGTTCAA+AGG - chr1_2:21307732-21307751 None:intergenic 40.0%
! TTTGTCTGAAACCCCCTATT+TGG + chr1_2:21307938-21307957 Msa0062140:intron 40.0%
! TTGTCTGAAACCCCCTATTT+GGG + chr1_2:21307939-21307958 Msa0062140:intron 40.0%
!! GCTTTTTGGGAGTGAACAAT+TGG + chr1_2:21308008-21308027 Msa0062140:intron 40.0%
AACAATTGGGGACCATACTA+AGG + chr1_2:21308022-21308041 Msa0062140:intron 40.0%
! GGATTCCGGATAATTTTCTG+AGG + chr1_2:21308299-21308318 Msa0062140:five_prime_UTR 40.0%
! CGTCTAGGATTGAAAAAGGT+TGG + chr1_2:21308382-21308401 Msa0062140:five_prime_UTR 40.0%
!!! TGGCAACCGTATTTGTTTTG+TGG + chr1_2:21308402-21308421 Msa0062140:five_prime_UTR 40.0%
!!! GTATTTGTTTTGTGGATGGC+TGG + chr1_2:21308410-21308429 Msa0062140:five_prime_UTR 40.0%
!! TATCGACTCCTTTGATTTCC+TGG + chr1_2:21308617-21308636 Msa0062140:five_prime_UTR 40.0%
! ATCGACTCCTTTGATTTCCT+GGG + chr1_2:21308618-21308637 Msa0062140:five_prime_UTR 40.0%
TATGGATCAACTGATACCAG+CGG + chr1_2:21308695-21308714 Msa0062140:exon 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_2:21308844-21308863 Msa0062140:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_2:21308844-21308863 Msa0062140:intron 40.0%
! TCACGTTTTCAAATTACGGC+TGG + chr1_2:21308941-21308960 Msa0062140:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_2:21308844-21308863 Msa0062140:intron 40.0%
CTCAAAGAGAGAGTGGTTAT+TGG - chr1_2:21309800-21309819 None:intergenic 40.0%
ATAACCACTCTCTCTTTGAG+TGG + chr1_2:21309800-21309819 Msa0062140:intron 40.0%
ACGTTCTCTTTCTCTCTCTT+TGG + chr1_2:21309923-21309942 Msa0062140:intron 40.0%
GAAGACCTTTCAAATGACAG+AGG - chr1_2:21309954-21309973 None:intergenic 40.0%
! TTGTTGGTTGTGGTTAGATG+GGG - chr1_2:21309979-21309998 None:intergenic 40.0%
! GTTGTTGGTTGTGGTTAGAT+GGG - chr1_2:21309980-21309999 None:intergenic 40.0%
! AGTTGTTGGTTGTGGTTAGA+TGG - chr1_2:21309981-21310000 None:intergenic 40.0%
! TGAAGCTTAATGGAGGCTTT+TGG - chr1_2:21310043-21310062 None:intergenic 40.0%
GTGAAGTTGAAGCTTAATGG+AGG - chr1_2:21310050-21310069 None:intergenic 40.0%
TTTGAGAGAGAGTGATAGAG+AGG + chr1_2:21310536-21310555 Msa0062140:intron 40.0%
CAAGAAAGAAGGGAAAATCG+CGG + chr1_2:21310683-21310702 Msa0062140:CDS 40.0%
AAGAGAAAGGGCAATGAATG+AGG + chr1_2:21311096-21311115 Msa0062140:CDS 40.0%
TGCGAGCCTCCTATTTATAT+AGG + chr1_2:21311161-21311180 Msa0062140:intron 40.0%
GCGAGCCTCCTATTTATATA+GGG + chr1_2:21311162-21311181 Msa0062140:intron 40.0%
CGAGCCTCCTATTTATATAG+GGG + chr1_2:21311163-21311182 Msa0062140:intron 40.0%
GCATCCCCTATATAAATAGG+AGG - chr1_2:21311170-21311189 None:intergenic 40.0%
CAAATCTGGTAGGCAAATAC+TGG - chr1_2:21311285-21311304 None:intergenic 40.0%
CAGTATTTGCCTACCAGATT+TGG + chr1_2:21311283-21311302 Msa0062140:intron 40.0%
!! GCAAATTTGAAGGGTGTTTC+AGG + chr1_2:21311307-21311326 Msa0062140:CDS 40.0%
GGAAAAAGTTAAGCCAAGGA+TGG + chr1_2:21311398-21311417 Msa0062140:CDS 40.0%
GTGTAAATTCGTACCATCCT+TGG - chr1_2:21311414-21311433 None:intergenic 40.0%
TACACAAGAGAACGGTTTAG+GGG + chr1_2:21311429-21311448 Msa0062140:CDS 40.0%
AACTTGCAACACTACAACTC+TGG - chr1_2:21311488-21311507 None:intergenic 40.0%
TTGTGGAAGGAAGGAAGAAG+AGG - chr1_2:21305632-21305651 None:intergenic 45.0%
AGAATGAGCTTGTGGAAGGA+AGG - chr1_2:21305641-21305660 None:intergenic 45.0%
TGGAAGAATGAGCTTGTGGA+AGG - chr1_2:21305645-21305664 None:intergenic 45.0%
TCTCGCATCCATGACCTAAA+TGG - chr1_2:21306365-21306384 None:intergenic 45.0%
!! GATGGATTGGTATCTTACGG+CGG - chr1_2:21306530-21306549 None:intergenic 45.0%
GCTGCTACTGTTATGTGTCA+AGG - chr1_2:21306807-21306826 None:intergenic 45.0%
CTGTCACTAACCATTCATGG+TGG - chr1_2:21306829-21306848 None:intergenic 45.0%
CCTCTGTCACTAACCATTCA+TGG - chr1_2:21306832-21306851 None:intergenic 45.0%
CCATGAATGGTTAGTGACAG+AGG + chr1_2:21306829-21306848 Msa0062140:intron 45.0%
GCAAGATCGTGATTAGCAAG+AGG + chr1_2:21306853-21306872 Msa0062140:intron 45.0%
GCAAAAAATCATCCAAGGGC+TGG - chr1_2:21306976-21306995 None:intergenic 45.0%
GGTCATGGATACAAGACATG+TGG - chr1_2:21306998-21307017 None:intergenic 45.0%
TGCAGTTGCTTGTAGTGTTC+TGG + chr1_2:21307412-21307431 Msa0062140:intron 45.0%
TTAATTTCGGGCCGAGTACA+TGG + chr1_2:21307615-21307634 Msa0062140:intron 45.0%
CTTTAATCGGGCCATGTACT+CGG - chr1_2:21307629-21307648 None:intergenic 45.0%
CCGATTAAAGTTAACGCACC+TGG + chr1_2:21307639-21307658 Msa0062140:intron 45.0%
GAAGAAAGGATCCGATCACA+GGG - chr1_2:21307767-21307786 None:intergenic 45.0%
ACAGGTAAGTTCCTAGAGCA+AGG - chr1_2:21307809-21307828 None:intergenic 45.0%
ATAAGAACAGCGCACAACAC+AGG - chr1_2:21307827-21307846 None:intergenic 45.0%
TTCTTATGCTCGTTGCCTTG+CGG + chr1_2:21307840-21307859 Msa0062140:intron 45.0%
ACATTACGGCCAAGGATTTC+TGG - chr1_2:21307866-21307885 None:intergenic 45.0%
AAACCATGTGCGCCCAAATA+GGG - chr1_2:21307954-21307973 None:intergenic 45.0%
TAAACCATGTGCGCCCAAAT+AGG - chr1_2:21307955-21307974 None:intergenic 45.0%
TTTCAATCCTAGACGCCAGA+CGG - chr1_2:21308377-21308396 None:intergenic 45.0%
! CTGGCGTCTAGGATTGAAAA+AGG + chr1_2:21308378-21308397 Msa0062140:five_prime_UTR 45.0%
CAACGCTACTCAATTGGCAT+TGG + chr1_2:21308445-21308464 Msa0062140:five_prime_UTR 45.0%
TCATAGAAGGCTCTTCAGTC+CGG - chr1_2:21308564-21308583 None:intergenic 45.0%
! CTCCTTTGATTTCCTGGGTT+CGG + chr1_2:21308623-21308642 Msa0062140:five_prime_UTR 45.0%
AATGCACCAGTAGGGTTTGA+AGG - chr1_2:21308651-21308670 None:intergenic 45.0%
TGCTTTGCAATGCACCAGTA+GGG - chr1_2:21308659-21308678 None:intergenic 45.0%
TTGCTTTGCAATGCACCAGT+AGG - chr1_2:21308660-21308679 None:intergenic 45.0%
TACTGGTGCATTGCAAAGCA+AGG + chr1_2:21308659-21308678 Msa0062140:five_prime_UTR 45.0%
TTGCAAAGCAAGGATTCTGC+TGG + chr1_2:21308669-21308688 Msa0062140:five_prime_UTR 45.0%
CAAGGATTCTGCTGGATGTA+TGG + chr1_2:21308677-21308696 Msa0062140:exon 45.0%
CAAGAAAGAAGCGGAAATCG+CGG + chr1_2:21308766-21308785 Msa0062140:CDS 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_2:21308853-21308872 Msa0062140:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_2:21308874-21308893 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_2:21308875-21308894 None:intergenic 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_2:21309074-21309093 Msa0062140:CDS 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_2:21309079-21309098 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_2:21309077-21309096 Msa0062140:CDS 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_2:21309082-21309101 None:intergenic 45.0%
CAAGAAAGAAGCGGAAATCG+CGG + chr1_2:21308766-21308785 Msa0062140:CDS 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_2:21308853-21308872 Msa0062140:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_2:21308874-21308893 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_2:21308875-21308894 None:intergenic 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_2:21309074-21309093 Msa0062140:CDS 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_2:21309079-21309098 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_2:21309077-21309096 Msa0062140:CDS 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_2:21309082-21309101 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_2:21308853-21308872 Msa0062140:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_2:21308874-21308893 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_2:21308875-21308894 None:intergenic 45.0%
TGTTAGTGTCGCATCTGAGT+TGG - chr1_2:21309626-21309645 None:intergenic 45.0%
! TCACGTTTTCAAACTACGGC+TGG + chr1_2:21309668-21309687 Msa0062140:intron 45.0%
! CACCTCCTCTGTCATTTGAA+AGG + chr1_2:21309946-21309965 Msa0062140:intron 45.0%
GACCTTTCAAATGACAGAGG+AGG - chr1_2:21309951-21309970 None:intergenic 45.0%
AACCAGTATAGCCGGTTATC+AGG + chr1_2:21310465-21310484 Msa0062140:intron 45.0%
AACCTGATAACCGGCTATAC+TGG - chr1_2:21310470-21310489 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_2:21308853-21308872 Msa0062140:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_2:21308874-21308893 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_2:21308875-21308894 None:intergenic 45.0%
CTGGTATCAATGTCTCAGTG+CGG + chr1_2:21310877-21310896 Msa0062140:intron 45.0%
CGCAGACTAACAAGACAGTA+AGG - chr1_2:21311145-21311164 None:intergenic 45.0%
! TTTTCCGGCCTTTGTCATCA+AGG - chr1_2:21311384-21311403 None:intergenic 45.0%
AAGAGAACGGTTTAGGGGAA+GGG + chr1_2:21311434-21311453 Msa0062140:CDS 45.0%
CTCTTACTTCTGAGTGATCC+TGG + chr1_2:21311624-21311643 Msa0062140:three_prime_UTR 45.0%
TGGGTACAGGTACGAGATTA+CGG - chr1_2:21311976-21311995 None:intergenic 45.0%
!! TATTTAAACTTAAATTAATA+AGG - chr1_2:21308087-21308106 None:intergenic 5.0%
!!! ATTTTTTAAAAATTAAGATA+CGG - chr1_2:21311951-21311970 None:intergenic 5.0%
! CAAGATGATGATGAGTGGGG+AGG - chr1_2:21306504-21306523 None:intergenic 50.0%
! CGGCAAGATGATGATGAGTG+GGG - chr1_2:21306507-21306526 None:intergenic 50.0%
! GCGGCAAGATGATGATGAGT+GGG - chr1_2:21306508-21306527 None:intergenic 50.0%
CAGTAGCAACAGCGATGGAT+TGG - chr1_2:21306543-21306562 None:intergenic 50.0%
ACAGTAGCAGCCACCATGAA+TGG + chr1_2:21306816-21306835 Msa0062140:intron 50.0%
CTCTTCCTCCTCTGTTCCAA+CGG - chr1_2:21306884-21306903 None:intergenic 50.0%
GTTGGAACAGAGGAGGAAGA+GGG + chr1_2:21306883-21306902 Msa0062140:intron 50.0%
GGAAGAAAGGATCCGATCAC+AGG - chr1_2:21307768-21307787 None:intergenic 50.0%
GGATCCTTTCTTCCCATGAC+TGG + chr1_2:21307774-21307793 Msa0062140:intron 50.0%
GGATCCAGTCATGGGAAGAA+AGG - chr1_2:21307781-21307800 None:intergenic 50.0%
AGGCAGAAGGATCCAGTCAT+GGG - chr1_2:21307789-21307808 None:intergenic 50.0%
AAGGCAGAAGGATCCAGTCA+TGG - chr1_2:21307790-21307809 None:intergenic 50.0%
AGTTCCTAGAGCAAGGCAGA+AGG - chr1_2:21307802-21307821 None:intergenic 50.0%
TGTGCACAACATTACGGCCA+AGG - chr1_2:21307874-21307893 None:intergenic 50.0%
AACCATGTGCGCCCAAATAG+GGG - chr1_2:21307953-21307972 None:intergenic 50.0%
CAGTTGCGACAGTCGAAAGT+TGG - chr1_2:21308336-21308355 None:intergenic 50.0%
GTCGCAACTGTCACTATTCC+TGG + chr1_2:21308346-21308365 Msa0062140:five_prime_UTR 50.0%
GCAACTGTCACTATTCCTGG+AGG + chr1_2:21308349-21308368 Msa0062140:five_prime_UTR 50.0%
TGCCGAACCCAGGAAATCAA+AGG - chr1_2:21308628-21308647 None:intergenic 50.0%
! TGTTGGCTATGATTCTCCGC+TGG - chr1_2:21308714-21308733 None:intergenic 50.0%
TGTTAGTGTCGCGTCTGAGT+TGG - chr1_2:21308899-21308918 None:intergenic 50.0%
CAGACACAACACTGAGACGT+TGG - chr1_2:21308969-21308988 None:intergenic 50.0%
TGTTAGTGTCGCGTCTGAGT+TGG - chr1_2:21308899-21308918 None:intergenic 50.0%
CAGACACGACACTAAGACGT+TGG - chr1_2:21309333-21309352 None:intergenic 50.0%
AGATGCGACACTAACACGTG+TGG + chr1_2:21309630-21309649 Msa0062140:intron 50.0%
CAGACACGACACTGAGACAT+TGG - chr1_2:21309696-21309715 None:intergenic 50.0%
ATTAGAGCAGTGCTAGCGTC+AGG + chr1_2:21309760-21309779 Msa0062140:intron 50.0%
TGGTCCACTCAAAGAGAGAG+TGG - chr1_2:21309807-21309826 None:intergenic 50.0%
AGCCTCCACTGAAAATGACG+AGG + chr1_2:21310627-21310646 Msa0062140:CDS 50.0%
!! CTCCTCGTCATTTTCAGTGG+AGG - chr1_2:21310632-21310651 None:intergenic 50.0%
CTCCACTGAAAATGACGAGG+AGG + chr1_2:21310630-21310649 Msa0062140:CDS 50.0%
!! TGCCTCCTCGTCATTTTCAG+TGG - chr1_2:21310635-21310654 None:intergenic 50.0%
TCTTGCAGACGCACGTTCAT+AGG - chr1_2:21311050-21311069 None:intergenic 50.0%
ATTCCGCTTCAGACATCCGA+TGG + chr1_2:21311334-21311353 Msa0062140:CDS 50.0%
TCACCATCGGATGTCTGAAG+CGG - chr1_2:21311340-21311359 None:intergenic 50.0%
CATCCGATGGTGAGAAACAG+TGG + chr1_2:21311347-21311366 Msa0062140:CDS 50.0%
! ACGCCACTGTTTCTCACCAT+CGG - chr1_2:21311353-21311372 None:intergenic 50.0%
! GTTCGCTGCCTTGATGACAA+AGG + chr1_2:21311373-21311392 Msa0062140:CDS 50.0%
GGCCGGAAAAAGTTAAGCCA+AGG + chr1_2:21311394-21311413 Msa0062140:CDS 50.0%
CAAGAGAACGGTTTAGGGGA+AGG + chr1_2:21311433-21311452 Msa0062140:CDS 50.0%
AGAGAACGGTTTAGGGGAAG+GGG + chr1_2:21311435-21311454 Msa0062140:CDS 50.0%
GGTCATGGATGCGAGACATG+TGG + chr1_2:21306369-21306388 Msa0062140:intron 55.0%
AGAGGGAAACGTGAGGACGA+TGG - chr1_2:21306458-21306477 None:intergenic 55.0%
AGGAGGAAGAGGGAAACGTG+AGG - chr1_2:21306465-21306484 None:intergenic 55.0%
GTCGGAACAGAGGAGGAAGA+GGG - chr1_2:21306475-21306494 None:intergenic 55.0%
AGTCGGAACAGAGGAGGAAG+AGG - chr1_2:21306476-21306495 None:intergenic 55.0%
GTCATGAGTCGGAACAGAGG+AGG - chr1_2:21306482-21306501 None:intergenic 55.0%
GAGGTCATGAGTCGGAACAG+AGG - chr1_2:21306485-21306504 None:intergenic 55.0%
TGAGTGGGGAGGTCATGAGT+CGG - chr1_2:21306493-21306512 None:intergenic 55.0%
! GGCGGCAAGATGATGATGAG+TGG - chr1_2:21306509-21306528 None:intergenic 55.0%
! GGATTGGTATCTTACGGCGG+CGG - chr1_2:21306527-21306546 None:intergenic 55.0%
CGTTGGAACAGAGGAGGAAG+AGG + chr1_2:21306882-21306901 Msa0062140:intron 55.0%
GTTAACGCACCTGGGGTAAG+AGG + chr1_2:21307648-21307667 Msa0062140:intron 55.0%
GATCACAGGGCAGGCAGAAA+GGG - chr1_2:21307754-21307773 None:intergenic 55.0%
CTTTCTGCCTGCCCTGTGAT+CGG + chr1_2:21307753-21307772 Msa0062140:intron 55.0%
AAAGGATCCGATCACAGGGC+AGG - chr1_2:21307763-21307782 None:intergenic 55.0%
GGATCCTTCTGCCTTGCTCT+AGG + chr1_2:21307795-21307814 Msa0062140:intron 55.0%
ACCATGTGCGCCCAAATAGG+GGG - chr1_2:21307952-21307971 None:intergenic 55.0%
TCGGCACCTTCAAACCCTAC+TGG + chr1_2:21308642-21308661 Msa0062140:five_prime_UTR 55.0%
AGACGCGACACTAACACGTG+TGG + chr1_2:21308903-21308922 Msa0062140:intron 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_2:21309050-21309069 Msa0062140:intron 55.0%
AGACGCGACACTAACACGTG+TGG + chr1_2:21308903-21308922 Msa0062140:intron 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_2:21309050-21309069 Msa0062140:intron 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_2:21309050-21309069 Msa0062140:intron 55.0%
AGACGCGACACTAACACGTG+TGG + chr1_2:21308903-21308922 Msa0062140:intron 55.0%
! GCTGCCTTGATGACAAAGGC+CGG + chr1_2:21311377-21311396 Msa0062140:CDS 55.0%
!! TAACGCGGTGCTGCAAGTGA+GGG - chr1_2:21311538-21311557 None:intergenic 55.0%
TTAGCAAGAGGGGCAGCCGT+TGG + chr1_2:21306865-21306884 Msa0062140:intron 60.0%
GAGGAGGAAGAGGGAACGTG+AGG + chr1_2:21306892-21306911 Msa0062140:intron 60.0%
TTTGCGGCTCCTCTTACCCC+AGG - chr1_2:21307660-21307679 None:intergenic 60.0%
CGATCACAGGGCAGGCAGAA+AGG - chr1_2:21307755-21307774 None:intergenic 60.0%
GCCTTGCGGCCAGAAATCCT+TGG + chr1_2:21307854-21307873 Msa0062140:intron 60.0%
!! GCCAAGGATTTCTGGCCGCA+AGG - chr1_2:21307858-21307877 None:intergenic 60.0%
ACCCCCTATTTGGGCGCACA+TGG + chr1_2:21307948-21307967 Msa0062140:intron 60.0%
!! CTATTCCTGGAGGCACCGTC+TGG + chr1_2:21308359-21308378 Msa0062140:five_prime_UTR 60.0%
!! GGTTTGAAGGTGCCGAACCC+AGG - chr1_2:21308638-21308657 None:intergenic 60.0%
!! CTAACGCGGTGCTGCAAGTG+AGG - chr1_2:21311539-21311558 None:intergenic 60.0%
GTCCATACCGGGTACGCGTA+CGG + chr1_2:21311689-21311708 Msa0062140:three_prime_UTR 60.0%
TACCGTACGCGTACCCGGTA+TGG - chr1_2:21311694-21311713 None:intergenic 60.0%
! ACGAGTACCGTACGCGTACC+CGG - chr1_2:21311699-21311718 None:intergenic 60.0%
AGGGGCAGCCGTTGGAACAG+AGG + chr1_2:21306873-21306892 Msa0062140:intron 65.0%
GGCAGCCGTTGGAACAGAGG+AGG + chr1_2:21306876-21306895 Msa0062140:intron 65.0%
GGGTACGCGTACGGTACTCG+TGG + chr1_2:21311698-21311717 Msa0062140:three_prime_UTR 65.0%
AGACGCCAGACGGTGCCTCC+AGG - chr1_2:21308367-21308386 None:intergenic 70.0%
!! GGAGGCACCGTCTGGCGTCT+AGG + chr1_2:21308367-21308386 Msa0062140:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 21305490 21312007 21305490 ID=Msa0062140;Name=Msa0062140
chr1_2 mRNA 21305490 21312007 21305490 ID=Msa0062140-mRNA-1;Parent=Msa0062140;Name=Msa0062140-mRNA-1;_AED=0.34;_eAED=0.34;_QI=597|1|1|1|0.83|0.71|7|449|270
chr1_2 exon 21305490 21305688 21305490 ID=Msa0062140-mRNA-1:exon:7929;Parent=Msa0062140-mRNA-1
chr1_2 exon 21308298 21308801 21308298 ID=Msa0062140-mRNA-1:exon:7930;Parent=Msa0062140-mRNA-1
chr1_2 exon 21309064 21309165 21309064 ID=Msa0062140-mRNA-1:exon:7931;Parent=Msa0062140-mRNA-1
chr1_2 exon 21309436 21309528 21309436 ID=Msa0062140-mRNA-1:exon:7932;Parent=Msa0062140-mRNA-1
chr1_2 exon 21310617 21310718 21310617 ID=Msa0062140-mRNA-1:exon:7933;Parent=Msa0062140-mRNA-1
chr1_2 exon 21310981 21311117 21310981 ID=Msa0062140-mRNA-1:exon:7934;Parent=Msa0062140-mRNA-1
chr1_2 exon 21311286 21312007 21311286 ID=Msa0062140-mRNA-1:exon:7935;Parent=Msa0062140-mRNA-1
chr1_2 five_prime_UTR 21305490 21305688 21305490 ID=Msa0062140-mRNA-1:five_prime_utr;Parent=Msa0062140-mRNA-1
chr1_2 five_prime_UTR 21308298 21308695 21308298 ID=Msa0062140-mRNA-1:five_prime_utr;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21308696 21308801 21308696 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21309064 21309165 21309064 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21309436 21309528 21309436 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21310617 21310718 21310617 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21310981 21311117 21310981 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 CDS 21311286 21311558 21311286 ID=Msa0062140-mRNA-1:cds;Parent=Msa0062140-mRNA-1
chr1_2 three_prime_UTR 21311559 21312007 21311559 ID=Msa0062140-mRNA-1:three_prime_utr;Parent=Msa0062140-mRNA-1
Gene Sequence

>Msa0062140

ATGGATCAACTGATACCAGCGGAGAATCATAGCCAACAAAGACAAGAAAATAAGGATACCAAGAAAACTTCAAGAAAGAAGCGGAAATCGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAATAGAGATACCAAGAAAACTTCAAGAAAGAAGCGGAAATCGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAATAGAGATACCAAGAAAACTTCAAGAAAGAAGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGACGAGGAGGCAGAGCGCAATCTAGTTACCAAGAAAACTTCAAGAAAGAAGGGAAAATCGCGGAAATCAGATCTGAGTGCACAGCGCAATCGATCTTATGAAAGTGCGTCTGCAAGAGTAAGAAGCAACATGTCAAATGTAGCCTATGAACGTGCGTCTGCAAGAGTAAGACACAATGTGTCAGATGAAGAAAGAGAAAGGGCAATGAATGAGTATTTGCCTACCAGATTTGGAGCAAATTTGAAGGGTGTTTCAGGTTTTATTCCGCTTCAGACATCCGATGGTGAGAAACAGTGGCGTGTTCGCTGCCTTGATGACAAAGGCCGGAAAAAGTTAAGCCAAGGATGGTACGAATTTACACAAGAGAACGGTTTAGGGGAAGGGGATATCTGTGTTTTTGAGCTGCTTAATACCAGAGTTGTAGTGTTGCAAGTTACTTTGTTTCGTCTAAAAGAGGATGAACCCTCACTTGCAGCACCGCGTTAG
Protein sequence

>Msa0062140

MDQLIPAENHSQQRQENKDTKKTSRKKRKSRKSDLSAQEASTENDEEAERNRDTKKTSRKKRKSRKSDLSAQEASTENDEEAERNRDTKKTSRKKRKSDLSAQEASTENDEEAERNLVTKKTSRKKGKSRKSDLSAQRNRSYESASARVRSNMSNVAYERASARVRHNVSDEERERAMNEYLPTRFGANLKGVSGFIPLQTSDGEKQWRVRCLDDKGRKKLSQGWYEFTQENGLGEGDICVFELLNTRVVVLQVTLFRLKEDEPSLAAPR*