Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062330 | AES59941.2 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062330 | sp|Q9FMY5|U2AFB_ARATH | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 6.94e-137 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062330 | G7IA30 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062330 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062330 | MtrunA17_Chr1g0162821 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Msa0062330 | MtrunA17_Chr2g0320801 | 66.783 | 286 | 86 | 2 | 1 | 278 | 1 | 285 | 2.60e-126 | 362 |
| Msa0062330 | MtrunA17_Chr7g0265751 | 60.656 | 305 | 82 | 5 | 1 | 276 | 1 | 296 | 1.80e-118 | 342 |
| Msa0062330 | MtrunA17_Chr2g0276901 | 37.864 | 103 | 61 | 1 | 73 | 172 | 23 | 125 | 2.96e-19 | 87.4 |
| Msa0062330 | MtrunA17_Chr2g0276891 | 57.143 | 49 | 21 | 0 | 9 | 57 | 184 | 232 | 9.01e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062330 | AT5G42820.1 | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 7.05e-138 | 390 |
| Msa0062330 | AT5G42820.2 | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 7.05e-138 | 390 |
| Msa0062330 | AT1G27650.1 | 68.041 | 291 | 68 | 4 | 1 | 272 | 1 | 285 | 7.19e-125 | 358 |
| Msa0062330 | AT1G27650.2 | 61.411 | 241 | 68 | 4 | 51 | 272 | 1 | 235 | 5.06e-83 | 249 |
| Msa0062330 | AT1G10320.2 | 38.922 | 167 | 97 | 2 | 9 | 172 | 228 | 392 | 1.12e-37 | 141 |
| Msa0062330 | AT1G10320.1 | 38.922 | 167 | 97 | 2 | 9 | 172 | 237 | 401 | 1.38e-37 | 141 |
| Msa0062330 | AT3G44785.1 | 81.481 | 54 | 10 | 0 | 1 | 54 | 1 | 54 | 3.15e-28 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATGGTGGGAGGAGAAA+TGG | 0.261636 | 1_2:-21666333 | Msa0062330:CDS |
| TTATGAAGGGAGGCCGATTT+TGG | 0.266968 | 1_2:-21666673 | Msa0062330:CDS |
| GTTGAATGTCTGTGATAATT+TGG | 0.270895 | 1_2:-21666781 | Msa0062330:CDS |
| TGTTGGAGAGGAGGAGAGTT+GGG | 0.288016 | 1_2:+21666943 | None:intergenic |
| TTCACCGAGCTTTCAAAATT+CGG | 0.310907 | 1_2:-21666816 | Msa0062330:CDS |
| GGGAGAGGAAAAGAGATAGT+AGG | 0.314372 | 1_2:-21666359 | Msa0062330:CDS |
| ATAGGGTTAGGGATGGAGAT+AGG | 0.323264 | 1_2:-21666386 | Msa0062330:CDS |
| GAGGAGAGTTGGGGAGATTG+TGG | 0.325267 | 1_2:+21666953 | None:intergenic |
| GTAGTGATAGGGATAGGGTT+AGG | 0.342152 | 1_2:-21666398 | Msa0062330:CDS |
| TTTATGCATGTTAAGAAGAT+TGG | 0.350465 | 1_2:-21666564 | Msa0062330:CDS |
| GAGATGGTGGGAGGAGAAAT+GGG | 0.363627 | 1_2:-21666332 | Msa0062330:CDS |
| GGAGAGGAAAAGAGATAGTA+GGG | 0.386799 | 1_2:-21666358 | Msa0062330:CDS |
| CAAGGATTGAGCAATGGAAT+AGG | 0.388115 | 1_2:-21666275 | Msa0062330:CDS |
| TGACCGTTTGGATCGACGCC+GGG | 0.392644 | 1_2:+21666894 | None:intergenic |
| GGAGAAATGGGAGGGAGGCA+AGG | 0.399845 | 1_2:-21666320 | Msa0062330:CDS |
| GGGAGATTGTGGGACGGTTG+TGG | 0.404937 | 1_2:+21666964 | None:intergenic |
| AGGAGAGTTGGGGAGATTGT+GGG | 0.405421 | 1_2:+21666954 | None:intergenic |
| GAGAAATGGGAGGGAGGCAA+GGG | 0.407109 | 1_2:-21666319 | Msa0062330:CDS |
| GCCTCACGAAAATCCGTAAC+AGG | 0.411096 | 1_2:+21666639 | None:intergenic |
| AGAAATCTTCGAAGTGTTGT+TGG | 0.412558 | 1_2:+21666850 | None:intergenic |
| GTGGAAGACGAAGTAGTGAT+AGG | 0.416019 | 1_2:-21666410 | Msa0062330:CDS |
| AGAAGATTGGTAGAGAATTG+AGG | 0.417884 | 1_2:-21666551 | Msa0062330:CDS |
| GGATCGATTGGTTGACCGTT+TGG | 0.421209 | 1_2:+21666882 | None:intergenic |
| GATAGTAGGGATAGAGATGG+TGG | 0.425369 | 1_2:-21666345 | Msa0062330:CDS |
| CTTCGCAGCGGAGCAGGAGC+CGG | 0.428582 | 1_2:-21666515 | Msa0062330:CDS |
| TAGTGATAGGGATAGGGTTA+GGG | 0.437566 | 1_2:-21666397 | Msa0062330:CDS |
| CTGCTTCTCCTTCTCCTCCT+CGG | 0.444757 | 1_2:+21666477 | None:intergenic |
| AGCGGAGCAGGAGCCGGAGC+AGG | 0.446956 | 1_2:-21666509 | Msa0062330:CDS |
| ATGTTGGAGAGGAGGAGAGT+TGG | 0.454313 | 1_2:+21666942 | None:intergenic |
| TGGGAGGAGAAATGGGAGGG+AGG | 0.457003 | 1_2:-21666325 | Msa0062330:CDS |
| AATTTGGCTGATCATATGAT+TGG | 0.466245 | 1_2:-21666765 | Msa0062330:CDS |
| AAGGATTGAGCAATGGAATA+GGG | 0.483210 | 1_2:-21666274 | Msa0062330:CDS |
| GACGAAGTAGTGATAGGGAT+AGG | 0.484651 | 1_2:-21666404 | Msa0062330:CDS |
| AATGGGAGGGAGGCAAGGGA+AGG | 0.490864 | 1_2:-21666315 | Msa0062330:CDS |
| GCGCCGATCTTGAAGTAGAA+AGG | 0.491890 | 1_2:+21667017 | None:intergenic |
| GTAATAGTCCGAGGAGGAGA+AGG | 0.500049 | 1_2:-21666485 | Msa0062330:CDS |
| TTAGGGATGGAGATAGGGAT+AGG | 0.502553 | 1_2:-21666380 | Msa0062330:CDS |
| TGGATCTGACGCGGATCGAT+TGG | 0.504819 | 1_2:+21666870 | None:intergenic |
| ACGAAGTAGTGATAGGGATA+GGG | 0.505580 | 1_2:-21666403 | Msa0062330:CDS |
| CGCCGATCTTGAAGTAGAAA+GGG | 0.506625 | 1_2:+21667018 | None:intergenic |
| TCGGACTATTACTCCTGCTC+CGG | 0.509383 | 1_2:+21666496 | None:intergenic |
| TAGGGTTAGGGATGGAGATA+GGG | 0.510727 | 1_2:-21666385 | Msa0062330:CDS |
| GGAGGCAAGGGAAGGAAGCG+AGG | 0.519892 | 1_2:-21666307 | Msa0062330:CDS |
| TGCCCTTTCTACTTCAAGAT+CGG | 0.519944 | 1_2:-21667020 | Msa0062330:CDS |
| GTTGGAGAGGAGGAGAGTTG+GGG | 0.525720 | 1_2:+21666944 | None:intergenic |
| GGCGACTTGTCGGCAGTATG+AGG | 0.530954 | 1_2:-21666619 | Msa0062330:CDS |
| AGAGATAGTAGGGATAGAGA+TGG | 0.530986 | 1_2:-21666348 | Msa0062330:CDS |
| CAAGGGAAGGAAGCGAGGAA+AGG | 0.534933 | 1_2:-21666302 | Msa0062330:CDS |
| GCGGCGTTAGCGAGTTTGAG+AGG | 0.538412 | 1_2:-21666702 | Msa0062330:CDS |
| GAACACTTAGCATCAATCTT+CGG | 0.547030 | 1_2:-21667065 | Msa0062330:CDS |
| ATGGAGATAGGGATAGGGAG+AGG | 0.548603 | 1_2:-21666374 | Msa0062330:CDS |
| GAAGCGAGGAAAGGCGAGCA+AGG | 0.556922 | 1_2:-21666293 | Msa0062330:CDS |
| TAGGGATGGAGATAGGGATA+GGG | 0.557714 | 1_2:-21666379 | Msa0062330:CDS |
| AAGATCGGCGCGTGTCGTCA+CGG | 0.559187 | 1_2:-21667005 | Msa0062330:CDS |
| GATAGGGATAGGGTTAGGGA+TGG | 0.561282 | 1_2:-21666393 | Msa0062330:CDS |
| TTGACCGTTTGGATCGACGC+CGG | 0.564773 | 1_2:+21666893 | None:intergenic |
| TGGAAGACGAAGTAGTGATA+GGG | 0.570881 | 1_2:-21666409 | Msa0062330:CDS |
| ATAGTAGGGATAGAGATGGT+GGG | 0.578568 | 1_2:-21666344 | Msa0062330:CDS |
| CGTTAGCGAGTTTGAGAGGG+AGG | 0.578892 | 1_2:-21666698 | Msa0062330:CDS |
| TGGTGGGAGGAGAAATGGGA+GGG | 0.582282 | 1_2:-21666328 | Msa0062330:CDS |
| CGGCGTTAGCGAGTTTGAGA+GGG | 0.582628 | 1_2:-21666701 | Msa0062330:CDS |
| GACCGTTTGGATCGACGCCG+GGG | 0.598231 | 1_2:+21666895 | None:intergenic |
| GGCGAGCAAGGATTGAGCAA+TGG | 0.617140 | 1_2:-21666281 | Msa0062330:CDS |
| CGTCCCGACATCATCACCCC+CGG | 0.623033 | 1_2:-21666912 | Msa0062330:CDS |
| GACGTTGGTACATGTTGGAG+AGG | 0.624648 | 1_2:+21666931 | None:intergenic |
| GAGGAGAATAGCTGTAATCG+TGG | 0.625598 | 1_2:-21666600 | Msa0062330:CDS |
| ATGGTGGGAGGAGAAATGGG+AGG | 0.633559 | 1_2:-21666329 | Msa0062330:CDS |
| ACCGTTTGGATCGACGCCGG+GGG | 0.637319 | 1_2:+21666896 | None:intergenic |
| GTTGGTACATGTTGGAGAGG+AGG | 0.641509 | 1_2:+21666934 | None:intergenic |
| GTCGGGACGTTGGTACATGT+TGG | 0.644753 | 1_2:+21666926 | None:intergenic |
| GTAGGGATAGAGATGGTGGG+AGG | 0.649876 | 1_2:-21666341 | Msa0062330:CDS |
| AAGTGTTGTTGGATCTGACG+CGG | 0.652115 | 1_2:+21666861 | None:intergenic |
| GATAGAGATTATGATTCGCG+TGG | 0.653513 | 1_2:-21666429 | Msa0062330:CDS |
| GGGTGATGATGTCGGGACGT+TGG | 0.655152 | 1_2:+21666916 | None:intergenic |
| AGATTGGTAGAGAATTGAGG+AGG | 0.657629 | 1_2:-21666548 | Msa0062330:CDS |
| GGAGCAGGAGTAATAGTCCG+AGG | 0.660385 | 1_2:-21666494 | Msa0062330:CDS |
| TAAAGAGGAGGATCATGCCG+CGG | 0.678541 | 1_2:-21666724 | Msa0062330:CDS |
| GAGTTGGGGAGATTGTGGGA+CGG | 0.682417 | 1_2:+21666958 | None:intergenic |
| GGTTGTGGAGACGAGAGCAA+CGG | 0.683538 | 1_2:+21666979 | None:intergenic |
| AGAGGAGGATCATGCCGCGG+CGG | 0.692345 | 1_2:-21666721 | Msa0062330:CDS |
| GAGAATAGCTGTAATCGTGG+TGG | 0.695229 | 1_2:-21666597 | Msa0062330:CDS |
| GCAGGAGTAATAGTCCGAGG+AGG | 0.699313 | 1_2:-21666491 | Msa0062330:CDS |
| CAAACTCGCTAACGCCGCCG+CGG | 0.711893 | 1_2:+21666707 | None:intergenic |
| GAATCATAATCTCTATCACG+CGG | 0.759540 | 1_2:+21666435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTATGTGCTTTTTAAAG+AGG | - | chr1_2:21666586-21666605 | Msa0062330:CDS | 25.0% |
| ! | TTTATGCATGTTAAGAAGAT+TGG | - | chr1_2:21666761-21666780 | Msa0062330:CDS | 25.0% |
| !!! | TGTTTATGTGCTTTTTAAAG+AGG | - | chr1_2:21666586-21666605 | Msa0062330:CDS | 25.0% |
| ! | TTTATGCATGTTAAGAAGAT+TGG | - | chr1_2:21666761-21666780 | Msa0062330:CDS | 25.0% |
| GTTGAATGTCTGTGATAATT+TGG | - | chr1_2:21666544-21666563 | Msa0062330:CDS | 30.0% | |
| AATTTGGCTGATCATATGAT+TGG | - | chr1_2:21666560-21666579 | Msa0062330:CDS | 30.0% | |
| !! | TTATGTGCTTTTTAAAGAGG+AGG | - | chr1_2:21666589-21666608 | Msa0062330:CDS | 30.0% |
| GTTGAATGTCTGTGATAATT+TGG | - | chr1_2:21666544-21666563 | Msa0062330:CDS | 30.0% | |
| AATTTGGCTGATCATATGAT+TGG | - | chr1_2:21666560-21666579 | Msa0062330:CDS | 30.0% | |
| !! | TTATGTGCTTTTTAAAGAGG+AGG | - | chr1_2:21666589-21666608 | Msa0062330:CDS | 30.0% |
| GAACACTTAGCATCAATCTT+CGG | - | chr1_2:21666260-21666279 | Msa0062330:CDS | 35.0% | |
| !! | AGAAATCTTCGAAGTGTTGT+TGG | + | chr1_2:21666478-21666497 | None:intergenic | 35.0% |
| TTCACCGAGCTTTCAAAATT+CGG | - | chr1_2:21666509-21666528 | Msa0062330:CDS | 35.0% | |
| !! | GTAACCGAATTTTGAAAGCT+CGG | + | chr1_2:21666516-21666535 | None:intergenic | 35.0% |
| AGAAGATTGGTAGAGAATTG+AGG | - | chr1_2:21666774-21666793 | Msa0062330:CDS | 35.0% | |
| GAATCATAATCTCTATCACG+CGG | + | chr1_2:21666893-21666912 | None:intergenic | 35.0% | |
| AAGGATTGAGCAATGGAATA+GGG | - | chr1_2:21667051-21667070 | Msa0062330:CDS | 35.0% | |
| GAACACTTAGCATCAATCTT+CGG | - | chr1_2:21666260-21666279 | Msa0062330:CDS | 35.0% | |
| !! | AGAAATCTTCGAAGTGTTGT+TGG | + | chr1_2:21666478-21666497 | None:intergenic | 35.0% |
| TTCACCGAGCTTTCAAAATT+CGG | - | chr1_2:21666509-21666528 | Msa0062330:CDS | 35.0% | |
| !! | GTAACCGAATTTTGAAAGCT+CGG | + | chr1_2:21666516-21666535 | None:intergenic | 35.0% |
| AGAAGATTGGTAGAGAATTG+AGG | - | chr1_2:21666774-21666793 | Msa0062330:CDS | 35.0% | |
| GAATCATAATCTCTATCACG+CGG | + | chr1_2:21666893-21666912 | None:intergenic | 35.0% | |
| AAGGATTGAGCAATGGAATA+GGG | - | chr1_2:21667051-21667070 | Msa0062330:CDS | 35.0% | |
| TGCCCTTTCTACTTCAAGAT+CGG | - | chr1_2:21666305-21666324 | Msa0062330:CDS | 40.0% | |
| !! | TTGAGAGGGAGGTTTTATGA+AGG | - | chr1_2:21666638-21666657 | Msa0062330:CDS | 40.0% |
| !! | TGAGAGGGAGGTTTTATGAA+GGG | - | chr1_2:21666639-21666658 | Msa0062330:CDS | 40.0% |
| GGAGAAAAATCCGCCAAAAT+CGG | + | chr1_2:21666668-21666687 | None:intergenic | 40.0% | |
| AGATTGGTAGAGAATTGAGG+AGG | - | chr1_2:21666777-21666796 | Msa0062330:CDS | 40.0% | |
| ! | GGAAATTGTTTTCTTCGCAG+CGG | - | chr1_2:21666798-21666817 | Msa0062330:CDS | 40.0% |
| GATAGAGATTATGATTCGCG+TGG | - | chr1_2:21666896-21666915 | Msa0062330:CDS | 40.0% | |
| TGGAAGACGAAGTAGTGATA+GGG | - | chr1_2:21666916-21666935 | Msa0062330:CDS | 40.0% | |
| ACGAAGTAGTGATAGGGATA+GGG | - | chr1_2:21666922-21666941 | Msa0062330:CDS | 40.0% | |
| TAGTGATAGGGATAGGGTTA+GGG | - | chr1_2:21666928-21666947 | Msa0062330:CDS | 40.0% | |
| GGAGAGGAAAAGAGATAGTA+GGG | - | chr1_2:21666967-21666986 | Msa0062330:CDS | 40.0% | |
| AGAGATAGTAGGGATAGAGA+TGG | - | chr1_2:21666977-21666996 | Msa0062330:CDS | 40.0% | |
| ATAGTAGGGATAGAGATGGT+GGG | - | chr1_2:21666981-21667000 | Msa0062330:CDS | 40.0% | |
| CAAGGATTGAGCAATGGAAT+AGG | - | chr1_2:21667050-21667069 | Msa0062330:CDS | 40.0% | |
| GCAATGGAATAGGGAAAAAG+AGG | - | chr1_2:21667060-21667079 | Msa0062330:CDS | 40.0% | |
| TGCCCTTTCTACTTCAAGAT+CGG | - | chr1_2:21666305-21666324 | Msa0062330:CDS | 40.0% | |
| !! | TTGAGAGGGAGGTTTTATGA+AGG | - | chr1_2:21666638-21666657 | Msa0062330:CDS | 40.0% |
| !! | TGAGAGGGAGGTTTTATGAA+GGG | - | chr1_2:21666639-21666658 | Msa0062330:CDS | 40.0% |
| GGAGAAAAATCCGCCAAAAT+CGG | + | chr1_2:21666668-21666687 | None:intergenic | 40.0% | |
| AGATTGGTAGAGAATTGAGG+AGG | - | chr1_2:21666777-21666796 | Msa0062330:CDS | 40.0% | |
| ! | GGAAATTGTTTTCTTCGCAG+CGG | - | chr1_2:21666798-21666817 | Msa0062330:CDS | 40.0% |
| GATAGAGATTATGATTCGCG+TGG | - | chr1_2:21666896-21666915 | Msa0062330:CDS | 40.0% | |
| TGGAAGACGAAGTAGTGATA+GGG | - | chr1_2:21666916-21666935 | Msa0062330:CDS | 40.0% | |
| ACGAAGTAGTGATAGGGATA+GGG | - | chr1_2:21666922-21666941 | Msa0062330:CDS | 40.0% | |
| TAGTGATAGGGATAGGGTTA+GGG | - | chr1_2:21666928-21666947 | Msa0062330:CDS | 40.0% | |
| GGAGAGGAAAAGAGATAGTA+GGG | - | chr1_2:21666967-21666986 | Msa0062330:CDS | 40.0% | |
| AGAGATAGTAGGGATAGAGA+TGG | - | chr1_2:21666977-21666996 | Msa0062330:CDS | 40.0% | |
| ATAGTAGGGATAGAGATGGT+GGG | - | chr1_2:21666981-21667000 | Msa0062330:CDS | 40.0% | |
| CAAGGATTGAGCAATGGAAT+AGG | - | chr1_2:21667050-21667069 | Msa0062330:CDS | 40.0% | |
| GCAATGGAATAGGGAAAAAG+AGG | - | chr1_2:21667060-21667079 | Msa0062330:CDS | 40.0% | |
| CGCCGATCTTGAAGTAGAAA+GGG | + | chr1_2:21666310-21666329 | None:intergenic | 45.0% | |
| ! | AAGTGTTGTTGGATCTGACG+CGG | + | chr1_2:21666467-21666486 | None:intergenic | 45.0% |
| !! | TTATGAAGGGAGGCCGATTT+TGG | - | chr1_2:21666652-21666671 | Msa0062330:CDS | 45.0% |
| !! | GGCGGATTTTTCTCCTGTTA+CGG | - | chr1_2:21666673-21666692 | Msa0062330:CDS | 45.0% |
| ! | TCCTGTTACGGATTTTCGTG+AGG | - | chr1_2:21666685-21666704 | Msa0062330:CDS | 45.0% |
| ! | ATTTTCGTGAGGCGACTTGT+CGG | - | chr1_2:21666696-21666715 | Msa0062330:CDS | 45.0% |
| GAGGAGAATAGCTGTAATCG+TGG | - | chr1_2:21666725-21666744 | Msa0062330:CDS | 45.0% | |
| GAGAATAGCTGTAATCGTGG+TGG | - | chr1_2:21666728-21666747 | Msa0062330:CDS | 45.0% | |
| GTGGAAGACGAAGTAGTGAT+AGG | - | chr1_2:21666915-21666934 | Msa0062330:CDS | 45.0% | |
| GACGAAGTAGTGATAGGGAT+AGG | - | chr1_2:21666921-21666940 | Msa0062330:CDS | 45.0% | |
| GTAGTGATAGGGATAGGGTT+AGG | - | chr1_2:21666927-21666946 | Msa0062330:CDS | 45.0% | |
| ATAGGGTTAGGGATGGAGAT+AGG | - | chr1_2:21666939-21666958 | Msa0062330:CDS | 45.0% | |
| TAGGGTTAGGGATGGAGATA+GGG | - | chr1_2:21666940-21666959 | Msa0062330:CDS | 45.0% | |
| TTAGGGATGGAGATAGGGAT+AGG | - | chr1_2:21666945-21666964 | Msa0062330:CDS | 45.0% | |
| TAGGGATGGAGATAGGGATA+GGG | - | chr1_2:21666946-21666965 | Msa0062330:CDS | 45.0% | |
| GGGAGAGGAAAAGAGATAGT+AGG | - | chr1_2:21666966-21666985 | Msa0062330:CDS | 45.0% | |
| GATAGTAGGGATAGAGATGG+TGG | - | chr1_2:21666980-21666999 | Msa0062330:CDS | 45.0% | |
| CGCCGATCTTGAAGTAGAAA+GGG | + | chr1_2:21666310-21666329 | None:intergenic | 45.0% | |
| ! | AAGTGTTGTTGGATCTGACG+CGG | + | chr1_2:21666467-21666486 | None:intergenic | 45.0% |
| !! | TTATGAAGGGAGGCCGATTT+TGG | - | chr1_2:21666652-21666671 | Msa0062330:CDS | 45.0% |
| !! | GGCGGATTTTTCTCCTGTTA+CGG | - | chr1_2:21666673-21666692 | Msa0062330:CDS | 45.0% |
| ! | TCCTGTTACGGATTTTCGTG+AGG | - | chr1_2:21666685-21666704 | Msa0062330:CDS | 45.0% |
| ! | ATTTTCGTGAGGCGACTTGT+CGG | - | chr1_2:21666696-21666715 | Msa0062330:CDS | 45.0% |
| GAGGAGAATAGCTGTAATCG+TGG | - | chr1_2:21666725-21666744 | Msa0062330:CDS | 45.0% | |
| GAGAATAGCTGTAATCGTGG+TGG | - | chr1_2:21666728-21666747 | Msa0062330:CDS | 45.0% | |
| GTGGAAGACGAAGTAGTGAT+AGG | - | chr1_2:21666915-21666934 | Msa0062330:CDS | 45.0% | |
| GACGAAGTAGTGATAGGGAT+AGG | - | chr1_2:21666921-21666940 | Msa0062330:CDS | 45.0% | |
| GTAGTGATAGGGATAGGGTT+AGG | - | chr1_2:21666927-21666946 | Msa0062330:CDS | 45.0% | |
| ATAGGGTTAGGGATGGAGAT+AGG | - | chr1_2:21666939-21666958 | Msa0062330:CDS | 45.0% | |
| TAGGGTTAGGGATGGAGATA+GGG | - | chr1_2:21666940-21666959 | Msa0062330:CDS | 45.0% | |
| TTAGGGATGGAGATAGGGAT+AGG | - | chr1_2:21666945-21666964 | Msa0062330:CDS | 45.0% | |
| TAGGGATGGAGATAGGGATA+GGG | - | chr1_2:21666946-21666965 | Msa0062330:CDS | 45.0% | |
| GGGAGAGGAAAAGAGATAGT+AGG | - | chr1_2:21666966-21666985 | Msa0062330:CDS | 45.0% | |
| GATAGTAGGGATAGAGATGG+TGG | - | chr1_2:21666980-21666999 | Msa0062330:CDS | 45.0% | |
| ! | GCGCCGATCTTGAAGTAGAA+AGG | + | chr1_2:21666311-21666330 | None:intergenic | 50.0% |
| AGGAGAGTTGGGGAGATTGT+GGG | + | chr1_2:21666374-21666393 | None:intergenic | 50.0% | |
| TGTTGGAGAGGAGGAGAGTT+GGG | + | chr1_2:21666385-21666404 | None:intergenic | 50.0% | |
| ATGTTGGAGAGGAGGAGAGT+TGG | + | chr1_2:21666386-21666405 | None:intergenic | 50.0% | |
| GTTGGTACATGTTGGAGAGG+AGG | + | chr1_2:21666394-21666413 | None:intergenic | 50.0% | |
| GACGTTGGTACATGTTGGAG+AGG | + | chr1_2:21666397-21666416 | None:intergenic | 50.0% | |
| ! | GGATCGATTGGTTGACCGTT+TGG | + | chr1_2:21666446-21666465 | None:intergenic | 50.0% |
| TAAAGAGGAGGATCATGCCG+CGG | - | chr1_2:21666601-21666620 | Msa0062330:CDS | 50.0% | |
| !! | GAGGGAGGTTTTATGAAGGG+AGG | - | chr1_2:21666642-21666661 | Msa0062330:CDS | 50.0% |
| GCCTCACGAAAATCCGTAAC+AGG | + | chr1_2:21666689-21666708 | None:intergenic | 50.0% | |
| TCGGACTATTACTCCTGCTC+CGG | + | chr1_2:21666832-21666851 | None:intergenic | 50.0% | |
| GTAATAGTCCGAGGAGGAGA+AGG | - | chr1_2:21666840-21666859 | Msa0062330:CDS | 50.0% | |
| GATAGGGATAGGGTTAGGGA+TGG | - | chr1_2:21666932-21666951 | Msa0062330:CDS | 50.0% | |
| ATGGAGATAGGGATAGGGAG+AGG | - | chr1_2:21666951-21666970 | Msa0062330:CDS | 50.0% | |
| !! | AGAGATGGTGGGAGGAGAAA+TGG | - | chr1_2:21666992-21667011 | Msa0062330:CDS | 50.0% |
| !! | GAGATGGTGGGAGGAGAAAT+GGG | - | chr1_2:21666993-21667012 | Msa0062330:CDS | 50.0% |
| ! | GCGCCGATCTTGAAGTAGAA+AGG | + | chr1_2:21666311-21666330 | None:intergenic | 50.0% |
| AGGAGAGTTGGGGAGATTGT+GGG | + | chr1_2:21666374-21666393 | None:intergenic | 50.0% | |
| TGTTGGAGAGGAGGAGAGTT+GGG | + | chr1_2:21666385-21666404 | None:intergenic | 50.0% | |
| ATGTTGGAGAGGAGGAGAGT+TGG | + | chr1_2:21666386-21666405 | None:intergenic | 50.0% | |
| GTTGGTACATGTTGGAGAGG+AGG | + | chr1_2:21666394-21666413 | None:intergenic | 50.0% | |
| GACGTTGGTACATGTTGGAG+AGG | + | chr1_2:21666397-21666416 | None:intergenic | 50.0% | |
| ! | GGATCGATTGGTTGACCGTT+TGG | + | chr1_2:21666446-21666465 | None:intergenic | 50.0% |
| TAAAGAGGAGGATCATGCCG+CGG | - | chr1_2:21666601-21666620 | Msa0062330:CDS | 50.0% | |
| !! | GAGGGAGGTTTTATGAAGGG+AGG | - | chr1_2:21666642-21666661 | Msa0062330:CDS | 50.0% |
| GCCTCACGAAAATCCGTAAC+AGG | + | chr1_2:21666689-21666708 | None:intergenic | 50.0% | |
| TCGGACTATTACTCCTGCTC+CGG | + | chr1_2:21666832-21666851 | None:intergenic | 50.0% | |
| GTAATAGTCCGAGGAGGAGA+AGG | - | chr1_2:21666840-21666859 | Msa0062330:CDS | 50.0% | |
| GATAGGGATAGGGTTAGGGA+TGG | - | chr1_2:21666932-21666951 | Msa0062330:CDS | 50.0% | |
| ATGGAGATAGGGATAGGGAG+AGG | - | chr1_2:21666951-21666970 | Msa0062330:CDS | 50.0% | |
| !! | AGAGATGGTGGGAGGAGAAA+TGG | - | chr1_2:21666992-21667011 | Msa0062330:CDS | 50.0% |
| !! | GAGATGGTGGGAGGAGAAAT+GGG | - | chr1_2:21666993-21667012 | Msa0062330:CDS | 50.0% |
| GGTTGTGGAGACGAGAGCAA+CGG | + | chr1_2:21666349-21666368 | None:intergenic | 55.0% | |
| GAGTTGGGGAGATTGTGGGA+CGG | + | chr1_2:21666370-21666389 | None:intergenic | 55.0% | |
| GAGGAGAGTTGGGGAGATTG+TGG | + | chr1_2:21666375-21666394 | None:intergenic | 55.0% | |
| GTTGGAGAGGAGGAGAGTTG+GGG | + | chr1_2:21666384-21666403 | None:intergenic | 55.0% | |
| GTCGGGACGTTGGTACATGT+TGG | + | chr1_2:21666402-21666421 | None:intergenic | 55.0% | |
| TTGACCGTTTGGATCGACGC+CGG | + | chr1_2:21666435-21666454 | None:intergenic | 55.0% | |
| TGGATCTGACGCGGATCGAT+TGG | + | chr1_2:21666458-21666477 | None:intergenic | 55.0% | |
| CGGCGTTAGCGAGTTTGAGA+GGG | - | chr1_2:21666624-21666643 | Msa0062330:CDS | 55.0% | |
| CGTTAGCGAGTTTGAGAGGG+AGG | - | chr1_2:21666627-21666646 | Msa0062330:CDS | 55.0% | |
| !! | TGAAGGGAGGCCGATTTTGG+CGG | - | chr1_2:21666655-21666674 | Msa0062330:CDS | 55.0% |
| ! | TGTTTTCTTCGCAGCGGAGC+AGG | - | chr1_2:21666804-21666823 | Msa0062330:CDS | 55.0% |
| GGAGCAGGAGTAATAGTCCG+AGG | - | chr1_2:21666831-21666850 | Msa0062330:CDS | 55.0% | |
| GCAGGAGTAATAGTCCGAGG+AGG | - | chr1_2:21666834-21666853 | Msa0062330:CDS | 55.0% | |
| CTGCTTCTCCTTCTCCTCCT+CGG | + | chr1_2:21666851-21666870 | None:intergenic | 55.0% | |
| !! | GTAGGGATAGAGATGGTGGG+AGG | - | chr1_2:21666984-21667003 | Msa0062330:CDS | 55.0% |
| ! | ATGGTGGGAGGAGAAATGGG+AGG | - | chr1_2:21666996-21667015 | Msa0062330:CDS | 55.0% |
| TGGTGGGAGGAGAAATGGGA+GGG | - | chr1_2:21666997-21667016 | Msa0062330:CDS | 55.0% | |
| GAGAAATGGGAGGGAGGCAA+GGG | - | chr1_2:21667006-21667025 | Msa0062330:CDS | 55.0% | |
| CAAGGGAAGGAAGCGAGGAA+AGG | - | chr1_2:21667023-21667042 | Msa0062330:CDS | 55.0% | |
| GGCGAGCAAGGATTGAGCAA+TGG | - | chr1_2:21667044-21667063 | Msa0062330:CDS | 55.0% | |
| GGTTGTGGAGACGAGAGCAA+CGG | + | chr1_2:21666349-21666368 | None:intergenic | 55.0% | |
| GAGTTGGGGAGATTGTGGGA+CGG | + | chr1_2:21666370-21666389 | None:intergenic | 55.0% | |
| GAGGAGAGTTGGGGAGATTG+TGG | + | chr1_2:21666375-21666394 | None:intergenic | 55.0% | |
| GTTGGAGAGGAGGAGAGTTG+GGG | + | chr1_2:21666384-21666403 | None:intergenic | 55.0% | |
| GTCGGGACGTTGGTACATGT+TGG | + | chr1_2:21666402-21666421 | None:intergenic | 55.0% | |
| TTGACCGTTTGGATCGACGC+CGG | + | chr1_2:21666435-21666454 | None:intergenic | 55.0% | |
| TGGATCTGACGCGGATCGAT+TGG | + | chr1_2:21666458-21666477 | None:intergenic | 55.0% | |
| CGGCGTTAGCGAGTTTGAGA+GGG | - | chr1_2:21666624-21666643 | Msa0062330:CDS | 55.0% | |
| CGTTAGCGAGTTTGAGAGGG+AGG | - | chr1_2:21666627-21666646 | Msa0062330:CDS | 55.0% | |
| !! | TGAAGGGAGGCCGATTTTGG+CGG | - | chr1_2:21666655-21666674 | Msa0062330:CDS | 55.0% |
| ! | TGTTTTCTTCGCAGCGGAGC+AGG | - | chr1_2:21666804-21666823 | Msa0062330:CDS | 55.0% |
| GGAGCAGGAGTAATAGTCCG+AGG | - | chr1_2:21666831-21666850 | Msa0062330:CDS | 55.0% | |
| GCAGGAGTAATAGTCCGAGG+AGG | - | chr1_2:21666834-21666853 | Msa0062330:CDS | 55.0% | |
| CTGCTTCTCCTTCTCCTCCT+CGG | + | chr1_2:21666851-21666870 | None:intergenic | 55.0% | |
| !! | GTAGGGATAGAGATGGTGGG+AGG | - | chr1_2:21666984-21667003 | Msa0062330:CDS | 55.0% |
| ! | ATGGTGGGAGGAGAAATGGG+AGG | - | chr1_2:21666996-21667015 | Msa0062330:CDS | 55.0% |
| TGGTGGGAGGAGAAATGGGA+GGG | - | chr1_2:21666997-21667016 | Msa0062330:CDS | 55.0% | |
| GAGAAATGGGAGGGAGGCAA+GGG | - | chr1_2:21667006-21667025 | Msa0062330:CDS | 55.0% | |
| CAAGGGAAGGAAGCGAGGAA+AGG | - | chr1_2:21667023-21667042 | Msa0062330:CDS | 55.0% | |
| GGCGAGCAAGGATTGAGCAA+TGG | - | chr1_2:21667044-21667063 | Msa0062330:CDS | 55.0% | |
| AAGATCGGCGCGTGTCGTCA+CGG | - | chr1_2:21666320-21666339 | Msa0062330:CDS | 60.0% | |
| GGGAGATTGTGGGACGGTTG+TGG | + | chr1_2:21666364-21666383 | None:intergenic | 60.0% | |
| ! | GGGTGATGATGTCGGGACGT+TGG | + | chr1_2:21666412-21666431 | None:intergenic | 60.0% |
| TGACCGTTTGGATCGACGCC+GGG | + | chr1_2:21666434-21666453 | None:intergenic | 60.0% | |
| GCGGCGTTAGCGAGTTTGAG+AGG | - | chr1_2:21666623-21666642 | Msa0062330:CDS | 60.0% | |
| GGCGACTTGTCGGCAGTATG+AGG | - | chr1_2:21666706-21666725 | Msa0062330:CDS | 60.0% | |
| TGGGAGGAGAAATGGGAGGG+AGG | - | chr1_2:21667000-21667019 | Msa0062330:CDS | 60.0% | |
| GGAGAAATGGGAGGGAGGCA+AGG | - | chr1_2:21667005-21667024 | Msa0062330:CDS | 60.0% | |
| AATGGGAGGGAGGCAAGGGA+AGG | - | chr1_2:21667010-21667029 | Msa0062330:CDS | 60.0% | |
| GAAGCGAGGAAAGGCGAGCA+AGG | - | chr1_2:21667032-21667051 | Msa0062330:CDS | 60.0% | |
| AAGATCGGCGCGTGTCGTCA+CGG | - | chr1_2:21666320-21666339 | Msa0062330:CDS | 60.0% | |
| GGGAGATTGTGGGACGGTTG+TGG | + | chr1_2:21666364-21666383 | None:intergenic | 60.0% | |
| ! | GGGTGATGATGTCGGGACGT+TGG | + | chr1_2:21666412-21666431 | None:intergenic | 60.0% |
| TGACCGTTTGGATCGACGCC+GGG | + | chr1_2:21666434-21666453 | None:intergenic | 60.0% | |
| GCGGCGTTAGCGAGTTTGAG+AGG | - | chr1_2:21666623-21666642 | Msa0062330:CDS | 60.0% | |
| GGCGACTTGTCGGCAGTATG+AGG | - | chr1_2:21666706-21666725 | Msa0062330:CDS | 60.0% | |
| TGGGAGGAGAAATGGGAGGG+AGG | - | chr1_2:21667000-21667019 | Msa0062330:CDS | 60.0% | |
| GGAGAAATGGGAGGGAGGCA+AGG | - | chr1_2:21667005-21667024 | Msa0062330:CDS | 60.0% | |
| AATGGGAGGGAGGCAAGGGA+AGG | - | chr1_2:21667010-21667029 | Msa0062330:CDS | 60.0% | |
| GAAGCGAGGAAAGGCGAGCA+AGG | - | chr1_2:21667032-21667051 | Msa0062330:CDS | 60.0% | |
| CGTCCCGACATCATCACCCC+CGG | - | chr1_2:21666413-21666432 | Msa0062330:CDS | 65.0% | |
| ! | ACGCCGGGGGTGATGATGTC+GGG | + | chr1_2:21666419-21666438 | None:intergenic | 65.0% |
| ! | GACGCCGGGGGTGATGATGT+CGG | + | chr1_2:21666420-21666439 | None:intergenic | 65.0% |
| !! | ACCCCCGGCGTCGATCCAAA+CGG | - | chr1_2:21666428-21666447 | Msa0062330:CDS | 65.0% |
| ACCGTTTGGATCGACGCCGG+GGG | + | chr1_2:21666432-21666451 | None:intergenic | 65.0% | |
| GACCGTTTGGATCGACGCCG+GGG | + | chr1_2:21666433-21666452 | None:intergenic | 65.0% | |
| AGAGGAGGATCATGCCGCGG+CGG | - | chr1_2:21666604-21666623 | Msa0062330:CDS | 65.0% | |
| CAAACTCGCTAACGCCGCCG+CGG | + | chr1_2:21666621-21666640 | None:intergenic | 65.0% | |
| GGAGGCAAGGGAAGGAAGCG+AGG | - | chr1_2:21667018-21667037 | Msa0062330:CDS | 65.0% | |
| CGTCCCGACATCATCACCCC+CGG | - | chr1_2:21666413-21666432 | Msa0062330:CDS | 65.0% | |
| ! | ACGCCGGGGGTGATGATGTC+GGG | + | chr1_2:21666419-21666438 | None:intergenic | 65.0% |
| ! | GACGCCGGGGGTGATGATGT+CGG | + | chr1_2:21666420-21666439 | None:intergenic | 65.0% |
| !! | ACCCCCGGCGTCGATCCAAA+CGG | - | chr1_2:21666428-21666447 | Msa0062330:CDS | 65.0% |
| ACCGTTTGGATCGACGCCGG+GGG | + | chr1_2:21666432-21666451 | None:intergenic | 65.0% | |
| GACCGTTTGGATCGACGCCG+GGG | + | chr1_2:21666433-21666452 | None:intergenic | 65.0% | |
| AGAGGAGGATCATGCCGCGG+CGG | - | chr1_2:21666604-21666623 | Msa0062330:CDS | 65.0% | |
| CAAACTCGCTAACGCCGCCG+CGG | + | chr1_2:21666621-21666640 | None:intergenic | 65.0% | |
| GGAGGCAAGGGAAGGAAGCG+AGG | - | chr1_2:21667018-21667037 | Msa0062330:CDS | 65.0% | |
| CTTCGCAGCGGAGCAGGAGC+CGG | - | chr1_2:21666810-21666829 | Msa0062330:CDS | 70.0% | |
| CTTCGCAGCGGAGCAGGAGC+CGG | - | chr1_2:21666810-21666829 | Msa0062330:CDS | 70.0% | |
| AGCGGAGCAGGAGCCGGAGC+AGG | - | chr1_2:21666816-21666835 | Msa0062330:CDS | 75.0% | |
| AGCGGAGCAGGAGCCGGAGC+AGG | - | chr1_2:21666816-21666835 | Msa0062330:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21666254 | 21667093 | 21666254 | ID=Msa0062330;Name=Msa0062330 |
| chr1_2 | mRNA | 21666254 | 21667093 | 21666254 | ID=Msa0062330-mRNA-1;Parent=Msa0062330;Name=Msa0062330-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|279 |
| chr1_2 | exon | 21666254 | 21667093 | 21666254 | ID=Msa0062330-mRNA-1:exon:8067;Parent=Msa0062330-mRNA-1 |
| chr1_2 | CDS | 21666254 | 21667093 | 21666254 | ID=Msa0062330-mRNA-1:cds;Parent=Msa0062330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
