AlfalfaGEDB | Msa0062330

M. sativa cultivar zhongmu-4 / Msa0062330

KEGG: K12836
GO: GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062330	AES59941.2	100.000	279	0	0	1	279	1	279	0.0	566

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062330	sp\|Q9FMY5\|U2AFB_ARATH	73.944	284	64	2	1	277	1	281	6.94e-137	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062330	G7IA30	100.000	279	0	0	1	279	1	279	0.0	566

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TFs/TRs:

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Gene ID	Type	Classification
Msa0062330	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062330	MtrunA17_Chr1g0162821	100.000	279	0	0	1	279	1	279	0.0	566
Msa0062330	MtrunA17_Chr2g0320801	66.783	286	86	2	1	278	1	285	2.60e-126	362
Msa0062330	MtrunA17_Chr7g0265751	60.656	305	82	5	1	276	1	296	1.80e-118	342
Msa0062330	MtrunA17_Chr2g0276901	37.864	103	61	1	73	172	23	125	2.96e-19	87.4
Msa0062330	MtrunA17_Chr2g0276891	57.143	49	21	0	9	57	184	232	9.01e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062330	AT5G42820.1	73.944	284	64	2	1	277	1	281	7.05e-138	390
Msa0062330	AT5G42820.2	73.944	284	64	2	1	277	1	281	7.05e-138	390
Msa0062330	AT1G27650.1	68.041	291	68	4	1	272	1	285	7.19e-125	358
Msa0062330	AT1G27650.2	61.411	241	68	4	51	272	1	235	5.06e-83	249
Msa0062330	AT1G10320.2	38.922	167	97	2	9	172	228	392	1.12e-37	141
Msa0062330	AT1G10320.1	38.922	167	97	2	9	172	237	401	1.38e-37	141
Msa0062330	AT3G44785.1	81.481	54	10	0	1	54	1	54	3.15e-28	103

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Find 84 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATCGGCGCGTGTCGTCA+CGG	0.559187	1_2:-21667005	Msa0062330:CDS
AAGGATTGAGCAATGGAATA+GGG	0.483210	1_2:-21666274	Msa0062330:CDS
AAGTGTTGTTGGATCTGACG+CGG	0.652115	1_2:+21666861	None:intergenic
AATGGGAGGGAGGCAAGGGA+AGG	0.490864	1_2:-21666315	Msa0062330:CDS
AATTTGGCTGATCATATGAT+TGG	0.466245	1_2:-21666765	Msa0062330:CDS
ACCGTTTGGATCGACGCCGG+GGG	0.637319	1_2:+21666896	None:intergenic
ACGAAGTAGTGATAGGGATA+GGG	0.505580	1_2:-21666403	Msa0062330:CDS
AGAAATCTTCGAAGTGTTGT+TGG	0.412558	1_2:+21666850	None:intergenic
AGAAGATTGGTAGAGAATTG+AGG	0.417884	1_2:-21666551	Msa0062330:CDS
AGAGATAGTAGGGATAGAGA+TGG	0.530986	1_2:-21666348	Msa0062330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAATGTCTGTGATAATT+TGG	-	chr1_2:21666544-21666563	Msa0062330:CDS	30.0%
AATTTGGCTGATCATATGAT+TGG	-	chr1_2:21666560-21666579	Msa0062330:CDS	30.0%
GTTGAATGTCTGTGATAATT+TGG	-	chr1_2:21666544-21666563	Msa0062330:CDS	30.0%
AATTTGGCTGATCATATGAT+TGG	-	chr1_2:21666560-21666579	Msa0062330:CDS	30.0%
GAACACTTAGCATCAATCTT+CGG	-	chr1_2:21666260-21666279	Msa0062330:CDS	35.0%
TTCACCGAGCTTTCAAAATT+CGG	-	chr1_2:21666509-21666528	Msa0062330:CDS	35.0%
AGAAGATTGGTAGAGAATTG+AGG	-	chr1_2:21666774-21666793	Msa0062330:CDS	35.0%
GAATCATAATCTCTATCACG+CGG	+	chr1_2:21666893-21666912	None:intergenic	35.0%
AAGGATTGAGCAATGGAATA+GGG	-	chr1_2:21667051-21667070	Msa0062330:CDS	35.0%
GAACACTTAGCATCAATCTT+CGG	-	chr1_2:21666260-21666279	Msa0062330:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	21666254	21667093	21666254	ID=Msa0062330;Name=Msa0062330
chr1_2	mRNA	21666254	21667093	21666254	ID=Msa0062330-mRNA-1;Parent=Msa0062330;Name=Msa0062330-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|279
chr1_2	exon	21666254	21667093	21666254	ID=Msa0062330-mRNA-1:exon:8067;Parent=Msa0062330-mRNA-1
chr1_2	CDS	21666254	21667093	21666254	ID=Msa0062330-mRNA-1:cds;Parent=Msa0062330-mRNA-1

Gene Sequence

>Msa0062330

ATGGCGGAACACTTAGCATCAATCTTCGGCACAGAAAAAGACAGAGTAAACTGCCCTTTCTACTTCAAGATCGGCGCGTGTCGTCACGGCGACCGTTGCTCTCGTCTCCACAACCGTCCCACAATCTCCCCAACTCTCCTCCTCTCCAACATGTACCAACGTCCCGACATCATCACCCCCGGCGTCGATCCAAACGGTCAACCAATCGATCCGCGTCAGATCCAACAACACTTCGAAGATTTCTACGAAGATATCTTCACCGAGCTTTCAAAATTCGGTTACGTTGAAACGTTGAATGTCTGTGATAATTTGGCTGATCATATGATTGGTAATGTTTATGTGCTTTTTAAAGAGGAGGATCATGCCGCGGCGGCGTTAGCGAGTTTGAGAGGGAGGTTTTATGAAGGGAGGCCGATTTTGGCGGATTTTTCTCCTGTTACGGATTTTCGTGAGGCGACTTGTCGGCAGTATGAGGAGAATAGCTGTAATCGTGGTGGTTATTGTAATTTTATGCATGTTAAGAAGATTGGTAGAGAATTGAGGAGGAAATTGTTTTCTTCGCAGCGGAGCAGGAGCCGGAGCAGGAGTAATAGTCCGAGGAGGAGAAGGAGAAGCAGAAGCAGAGAACGAGAGAGACCGCGTGATAGAGATTATGATTCGCGTGGAAGACGAAGTAGTGATAGGGATAGGGTTAGGGATGGAGATAGGGATAGGGAGAGGAAAAGAGATAGTAGGGATAGAGATGGTGGGAGGAGAAATGGGAGGGAGGCAAGGGAAGGAAGCGAGGAAAGGCGAGCAAGGATTGAGCAATGGAATAGGGAAAAAGAGGAGAAGCCGTGA

Protein sequence

>Msa0062330

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRELRRKLFSSQRSRSRSRSNSPRRRRRSRSRERERPRDRDYDSRGRRSSDRDRVRDGDRDRERKRDSRDRDGGRRNGREAREGSEERRARIEQWNREKEEKP*