AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062510 MtrunA17_Chr1g0163071 91.391 302 22 1 33 334 1 298 0.0 542
Msa0062510 MtrunA17_Chr1g0208771 46.725 458 216 11 34 479 13 454 1.09e-124 376
Msa0062510 MtrunA17_Chr1g0208771 35.772 123 76 2 476 595 9 131 1.18e-11 67.4
Msa0062510 MtrunA17_Chr8g0390841 41.359 515 238 15 1 478 26 513 8.96e-116 355
Msa0062510 MtrunA17_Chr1g0163081 83.673 147 23 1 475 621 1 146 1.25e-85 263
Msa0062510 MtrunA17_Chr1g0162161 75.839 149 32 1 477 621 1 149 1.67e-75 238
Msa0062510 MtrunA17_Chr1g0163101 75.862 145 33 2 479 621 32 176 5.02e-72 229
Msa0062510 MtrunA17_Chr1g0163101 33.333 144 88 4 13 151 12 152 4.16e-15 73.9
Msa0062510 MtrunA17_Chr1g0163121 72.414 145 33 1 477 621 8 145 2.61e-67 216
Msa0062510 MtrunA17_Chr1g0163121 33.058 121 74 4 32 148 9 126 1.61e-11 62.8
Msa0062510 MtrunA17_Chr1g0163131 69.504 141 38 2 479 615 33 172 2.15e-61 206
Msa0062510 MtrunA17_Chr1g0163131 28.125 320 188 10 13 319 13 303 1.66e-22 98.6
Msa0062510 MtrunA17_Chr1g0163161 72.593 135 31 3 492 621 1 134 5.12e-61 199
Msa0062510 MtrunA17_Chr6g0476181 61.585 164 37 3 479 621 1 159 2.32e-60 198
Msa0062510 MtrunA17_Chr6g0476181 35.537 121 68 5 33 152 1 112 4.62e-11 61.6
Msa0062510 MtrunA17_Chr1g0163141 59.036 166 45 2 479 621 10 175 6.62e-57 190
Msa0062510 MtrunA17_Chr1g0163141 37.500 96 57 2 32 127 9 101 2.10e-12 66.2
Msa0062510 MtrunA17_Chr3g0131891 37.003 327 153 9 13 323 14 303 2.43e-55 191
Msa0062510 MtrunA17_Chr3g0131891 39.450 109 62 3 479 584 34 141 9.25e-12 66.6
Msa0062510 MtrunA17_Chr7g0233561 32.827 329 168 6 16 323 16 312 5.85e-50 176
Msa0062510 MtrunA17_Chr7g0233541 34.185 313 151 9 33 323 1 280 3.06e-49 173
Msa0062510 MtrunA17_Chr7g0233521 34.768 302 147 8 33 323 1 263 2.25e-47 167
Msa0062510 MtrunA17_Chr3g0103181 32.390 318 164 8 12 322 6 279 2.15e-44 159
Msa0062510 MtrunA17_Chr3g0103181 27.273 275 159 9 235 479 13 276 8.04e-19 87.0
Msa0062510 MtrunA17_Chr4g0033961 29.730 407 190 14 18 336 6 404 1.61e-42 158
Msa0062510 MtrunA17_Chr7g0233531 31.788 302 156 5 33 323 1 263 3.13e-42 154
Msa0062510 MtrunA17_Chr3g0103191 34.317 271 139 8 12 282 6 237 1.53e-39 145
Msa0062510 MtrunA17_Chr3g0103191 35.433 127 74 3 467 590 13 134 6.32e-13 69.3
Msa0062510 MtrunA17_Chr3g0103191 26.471 238 144 7 235 445 13 246 7.00e-11 63.2
Msa0062510 MtrunA17_Chr4g0067431 30.816 331 197 11 13 331 10 320 2.62e-37 141
Msa0062510 MtrunA17_Chr4g0067431 37.324 142 73 6 480 612 31 165 5.06e-18 85.5
Msa0062510 MtrunA17_Chr1g0163181 27.152 453 274 13 26 470 13 417 7.27e-37 143
Msa0062510 MtrunA17_Chr1g0163181 37.013 154 79 5 480 615 21 174 2.86e-22 100
Msa0062510 MtrunA17_Chr3g0103171 28.956 297 166 7 34 322 6 265 1.54e-35 134
Msa0062510 MtrunA17_Chr3g0103171 27.237 257 159 7 251 479 6 262 1.38e-16 80.1
Msa0062510 MtrunA17_Chr3g0103171 36.000 100 61 2 475 571 1 100 6.99e-13 69.3
Msa0062510 MtrunA17_Chr3g0103151 41.176 153 86 3 16 168 10 158 4.51e-32 121
Msa0062510 MtrunA17_Chr3g0103151 35.156 128 73 4 467 590 13 134 5.16e-14 70.1
Msa0062510 MtrunA17_Chr7g0233571 31.718 227 134 4 18 244 10 215 5.88e-31 120
Msa0062510 MtrunA17_Chr7g0233571 43.750 96 51 2 479 571 25 120 8.02e-14 71.2
Msa0062510 MtrunA17_Chr1g0163221 29.846 325 191 9 13 331 6 299 1.54e-29 120
Msa0062510 MtrunA17_Chr1g0154041 23.063 542 311 15 32 470 29 567 2.97e-29 122
Msa0062510 MtrunA17_Chr1g0163261 26.462 325 194 6 17 334 8 294 3.95e-28 114
Msa0062510 MtrunA17_Chr1g0163261 45.882 85 45 1 480 563 25 109 3.46e-18 85.9
Msa0062510 MtrunA17_Chr1g0163201 23.841 453 256 9 34 479 19 389 6.01e-28 116
Msa0062510 MtrunA17_Chr1g0163201 46.067 89 47 1 480 567 19 107 1.02e-19 92.0
Msa0062510 MtrunA17_Chr1g0163251 28.135 327 187 10 26 340 13 303 1.37e-26 112
Msa0062510 MtrunA17_Chr1g0163251 52.809 89 41 1 480 567 21 109 3.99e-23 102
Msa0062510 MtrunA17_Chr3g0103201 30.315 254 133 8 76 322 4 220 1.22e-25 105
Msa0062510 MtrunA17_Chr3g0103201 37.984 129 73 5 355 479 92 217 4.35e-14 72.0
Msa0062510 MtrunA17_Chr5g0419201 34.591 159 88 3 18 168 16 166 1.67e-25 103
Msa0062510 MtrunA17_Chr5g0419201 33.577 137 77 5 465 590 15 148 6.84e-15 73.6
Msa0062510 MtrunA17_Chr3g0077411 22.346 537 313 16 18 489 25 522 3.40e-24 106
Msa0062510 MtrunA17_Chr3g0077411 25.460 326 157 9 15 322 259 516 4.44e-22 100
Msa0062510 MtrunA17_Chr1g0163231 40.876 137 74 2 480 615 25 155 6.34e-23 99.8
Msa0062510 MtrunA17_Chr1g0163231 23.175 315 185 9 18 321 9 277 1.35e-19 89.7
Msa0062510 MtrunA17_Chr5g0429931 27.667 300 139 9 34 323 11 242 8.19e-23 98.2
Msa0062510 MtrunA17_Chr1g0163241 46.237 93 49 1 476 567 19 111 8.97e-22 92.8
Msa0062510 MtrunA17_Chr1g0163241 40.964 83 47 1 34 116 23 103 5.26e-14 70.5
Msa0062510 MtrunA17_Chr6g0467351 29.524 210 122 5 16 212 13 209 6.58e-21 92.0
Msa0062510 MtrunA17_Chr6g0467351 41.667 84 45 3 480 559 31 114 1.13e-12 68.2
Msa0062510 MtrunA17_Chr1g0171611 38.686 137 64 4 480 615 25 142 1.61e-20 92.4
Msa0062510 MtrunA17_Chr1g0171611 24.522 314 170 8 18 321 9 265 4.82e-19 88.2
Msa0062510 MtrunA17_Chr1g0163191 42.718 103 56 2 480 581 21 121 7.50e-20 87.0
Msa0062510 MtrunA17_Chr1g0163191 41.758 91 51 1 26 116 13 101 2.84e-17 79.7
Msa0062510 MtrunA17_Chr1g0162441 34.286 140 79 2 18 147 7 143 4.80e-19 90.1
Msa0062510 MtrunA17_Chr1g0162441 28.000 175 114 4 165 327 222 396 5.87e-17 83.6
Msa0062510 MtrunA17_Chr3g0077461 26.351 296 133 8 21 311 241 456 1.99e-18 88.6
Msa0062510 MtrunA17_Chr3g0077461 22.822 482 292 16 34 477 23 462 5.54e-17 84.0
Msa0062510 MtrunA17_Chr3g0103161 39.669 121 68 3 362 479 2 120 7.30e-18 80.1
Msa0062510 MtrunA17_Chr3g0077451 34.043 141 86 3 32 165 10 150 1.01e-17 83.2
Msa0062510 MtrunA17_Chr1g0154071 25.079 315 210 7 32 320 169 483 1.77e-16 82.8
Msa0062510 MtrunA17_Chr1g0154161 23.899 318 192 11 16 322 28 306 4.12e-15 77.0
Msa0062510 MtrunA17_Chr1g0163061 32.609 138 82 4 16 149 13 143 4.42e-15 75.9
Msa0062510 MtrunA17_Chr1g0163061 44.048 84 43 2 480 559 31 114 1.89e-12 68.2
Msa0062510 MtrunA17_Chr1g0162411 30.435 138 85 2 18 147 7 141 1.34e-14 76.6
Msa0062510 MtrunA17_Chr3g0077381 34.906 106 66 1 32 137 34 136 6.70e-14 74.3
Msa0062510 MtrunA17_Chr1g0154171 21.290 310 220 7 31 319 35 341 8.19e-14 73.6
Msa0062510 MtrunA17_Chr1g0154151 23.411 299 211 9 34 321 20 311 3.93e-13 70.9
Msa0062510 MtrunA17_Chr4g0009491 36.782 87 55 0 32 118 11 97 6.53e-13 71.2
Msa0062510 MtrunA17_Chr4g0009491 29.139 151 78 3 21 171 229 350 1.60e-11 66.6
Msa0062510 MtrunA17_Chr1g0163091 30.702 114 71 3 229 334 17 130 7.86e-12 63.9
Msa0062510 MtrunA17_Chr3g0077361 28.571 140 94 3 18 156 40 174 6.66e-11 65.1
Msa0062510 MtrunA17_Chr1g0154111 26.316 190 122 6 374 545 248 437 8.72e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062510 AT3G18990.1 28.367 349 195 10 18 326 6 339 4.30e-36 139
Msa0062510 AT3G18990.1 34.906 106 64 3 376 479 230 332 3.33e-12 68.6
Msa0062510 AT3G18990.2 27.954 347 199 9 18 326 6 339 1.96e-35 137
Msa0062510 AT3G18990.2 34.906 106 64 3 376 479 230 332 4.75e-12 68.6
Msa0062510 AT4G01580.1 32.857 140 85 2 17 154 29 161 6.31e-18 82.8
Msa0062510 AT3G18960.2 36.275 102 65 0 17 118 29 130 9.38e-18 82.4
Msa0062510 AT3G18960.1 36.275 102 65 0 17 118 29 130 1.34e-17 82.4
Msa0062510 AT4G33280.1 24.837 306 201 10 31 326 36 322 2.70e-15 78.2
Msa0062510 AT1G49480.3 31.081 148 94 5 186 326 78 224 3.72e-15 75.5
Msa0062510 AT1G49480.3 34.906 106 64 3 376 479 115 217 5.64e-13 69.3
Msa0062510 AT1G49480.1 31.081 148 94 5 186 326 78 224 3.72e-15 75.5
Msa0062510 AT1G49480.1 34.906 106 64 3 376 479 115 217 5.64e-13 69.3
Msa0062510 AT1G49480.2 31.081 148 94 5 186 326 78 224 3.72e-15 75.5
Msa0062510 AT1G49480.2 34.906 106 64 3 376 479 115 217 5.64e-13 69.3
Msa0062510 AT3G18960.3 40.000 85 51 0 34 118 9 93 1.13e-14 72.8
Msa0062510 AT1G49475.1 33.333 135 79 4 17 142 33 165 1.38e-14 73.2
Msa0062510 AT4G00260.1 25.379 264 166 10 230 481 130 374 9.00e-11 65.1

Find 101 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCTGATTTGGAAGTTTA+AGG 0.096268 1_2:-22061967 None:intergenic
GTAGAGGTTGGAAGCTATTT+TGG 0.155141 1_2:+22060539 Msa0062510:CDS
TGAGGACTCCATTGAAATTT+TGG 0.168496 1_2:+22058877 Msa0062510:CDS
AATCAAATAATCCTTCTTTC+AGG 0.198997 1_2:+22059260 Msa0062510:CDS
TACAACGCGGTTATGATATT+TGG 0.205085 1_2:+22062008 Msa0062510:CDS
AACTCTTGGATGGGAGAGTT+TGG 0.242668 1_2:+22059584 Msa0062510:CDS
GGACACATAATTGGTGATTT+TGG 0.244060 1_2:-22058932 None:intergenic
TGTATTAGATGATAGTAAAT+TGG 0.248691 1_2:+22062120 Msa0062510:CDS
TAATTTGTAATGAAGGAATT+TGG 0.257343 1_2:-22060418 None:intergenic
CATGATGCTTAGGCAAGTTT+TGG 0.267797 1_2:-22059015 None:intergenic
CAAAGTAAGGTATTGGCTTT+TGG 0.269874 1_2:-22059704 None:intergenic
GTACACAACAAGTTGAAAAT+TGG 0.270510 1_2:+22059658 Msa0062510:CDS
GAATAACAATGCAACTTTAC+AGG 0.277076 1_2:-22060493 None:intergenic
TTTGGAAGTTTAAGGGATAT+TGG 0.287162 1_2:-22061959 None:intergenic
CTCGAATGCCCTCGTTGATT+TGG 0.289824 1_2:-22060269 None:intergenic
CAGATGGTGATGTTAAAGTT+TGG 0.294860 1_2:+22060457 Msa0062510:CDS
AGGTTGAGTGCAAAATGTTT+TGG 0.311705 1_2:+22061984 Msa0062510:CDS
AGCTTTCCATCTTGAAGAAT+TGG 0.312657 1_2:-22058004 None:intergenic
AACAACAATGACTAGCAATA+AGG 0.315318 1_2:+22057925 None:intergenic
ATAAATATGTGAAGACTTCA+TGG 0.326594 1_2:-22059287 None:intergenic
ATGATATTTGGCTAGTGAAT+TGG 0.327057 1_2:+22062020 Msa0062510:CDS
ATCCCTTAAACTTCCAAATC+AGG 0.338377 1_2:+22061964 Msa0062510:CDS
TGTGGTTGAGGACACATAAT+TGG 0.354680 1_2:-22058941 None:intergenic
TGACATTCTTCTTCAACTCT+TGG 0.360124 1_2:+22059570 Msa0062510:CDS
GAAACTATTATGACAAATAA+AGG 0.361575 1_2:+22059909 Msa0062510:CDS
TTACTTTCAAAGTAAGGTAT+TGG 0.362100 1_2:-22059711 None:intergenic
AACCTGATTTGGAAGTTTAA+GGG 0.367656 1_2:-22061966 None:intergenic
AGATGGTGATGTTAAAGTTT+GGG 0.372056 1_2:+22060458 Msa0062510:CDS
TACACAACAAGTTGAAAATT+GGG 0.372067 1_2:+22059659 Msa0062510:CDS
TGGTCCTTAGTGAAACCTTT+TGG 0.375145 1_2:-22058578 None:intergenic
CTCAATTTCTTATGTGGTTG+AGG 0.383589 1_2:-22058953 None:intergenic
TGTTATTCCAACATGAAATC+AGG 0.384360 1_2:+22060508 Msa0062510:CDS
TTCCTTCATTACAAATTACT+TGG 0.385639 1_2:+22060423 Msa0062510:CDS
ACTCTTGGATGGGAGAGTTT+GGG 0.388176 1_2:+22059585 Msa0062510:CDS
ATCCAAGTAATTTGTAATGA+AGG 0.391002 1_2:-22060425 None:intergenic
CCACATTCCCCTCCCCTTCA+AGG 0.392505 1_2:+22059757 Msa0062510:CDS
GATTTGACATGTCATTCATA+TGG 0.392626 1_2:-22058598 None:intergenic
ATATTATTACTTTCAAAGTA+AGG 0.401134 1_2:-22059717 None:intergenic
TTCAATCTCAAGGGTACTCT+TGG 0.401861 1_2:-22058798 None:intergenic
TATTTAACTGCTCCTGCTCT+TGG 0.409863 1_2:-22059222 None:intergenic
GCTTCCAACCTCTACAAAAC+TGG 0.416735 1_2:-22060531 None:intergenic
TGACTTGTCCAAAATTTCAA+TGG 0.423265 1_2:-22058885 None:intergenic
TCATTTCTCAATTTCTTATG+TGG 0.425680 1_2:-22058959 None:intergenic
ACAACAATGACTAGCAATAA+GGG 0.438593 1_2:+22057926 None:intergenic
ATTCTTCTTCAACTCTTGGA+TGG 0.449374 1_2:+22059574 Msa0062510:CDS
AACAAGTTGGATTACCTTGA+AGG 0.449668 1_2:-22059771 None:intergenic
TTCACTAGATCATGGGCATA+TGG 0.450667 1_2:+22058727 Msa0062510:CDS
TCAACGAGACAAAGACTTCT+CGG 0.453926 1_2:+22059875 Msa0062510:CDS
TGAGTGCGACTAAAATCAAT+GGG 0.458480 1_2:+22058660 Msa0062510:CDS
ACATATTTATAGTCATTCCT+TGG 0.460818 1_2:+22059300 Msa0062510:CDS
CAAGAATTATACCACTAGAT+TGG 0.461063 1_2:-22059039 None:intergenic
ACACATTATTCACTAGATCA+TGG 0.461106 1_2:+22058719 Msa0062510:CDS
TGGAGTTGAATTTATCAGCT+TGG 0.461811 1_2:-22060217 None:intergenic
TTCTTCTTCAACTCTTGGAT+GGG 0.471949 1_2:+22059575 Msa0062510:CDS
TCAACGAGGGCATTCGAGAT+TGG 0.486711 1_2:+22060274 Msa0062510:CDS
CTGGAAGAATTAAAGGTGGA+TGG 0.489864 1_2:+22059623 Msa0062510:CDS
TGGGAAGAAAATAAATTGAA+AGG 0.492702 1_2:+22060559 Msa0062510:CDS
ACCACACCAATTCTTCAAGA+TGG 0.495178 1_2:+22057998 Msa0062510:CDS
ATGAGTGCGACTAAAATCAA+TGG 0.496366 1_2:+22058659 Msa0062510:CDS
AAAGATTTGCACGATCGCTT+AGG 0.496687 1_2:+22062044 Msa0062510:CDS
AGTAATAATATTTAGACTTG+AGG 0.498996 1_2:+22059729 Msa0062510:CDS
TAAAGTTTGGGAAGAAATTG+TGG 0.501503 1_2:+22060470 Msa0062510:CDS
CCTTGAAGGGGAGGGGAATG+TGG 0.501998 1_2:-22059757 None:intergenic
ACAAGTTGGATTACCTTGAA+GGG 0.512204 1_2:-22059770 None:intergenic
GGAAAGGATATTCAATCTCA+AGG 0.515164 1_2:-22058808 None:intergenic
TTGGATTACCTTGAAGGGGA+GGG 0.522489 1_2:-22059765 None:intergenic
CTAGATTGGACATGATGCTT+AGG 0.523842 1_2:-22059025 None:intergenic
TCTGGAGTCTTGAGAAACAT+TGG 0.528591 1_2:-22058620 None:intergenic
TGTGTTTGCAGATGATTCCA+AGG 0.536933 1_2:+22061900 Msa0062510:intron
CACATTATTCACTAGATCAT+GGG 0.539236 1_2:+22058720 Msa0062510:CDS
TTCATGGTAATCCTGAAAGA+AGG 0.545664 1_2:-22059271 None:intergenic
TTGTCAATGTTTGTCCCTTG+AGG 0.547113 1_2:-22062256 None:intergenic
TCTCGATATGGCAGGAGAGA+AGG 0.547348 1_2:+22060136 Msa0062510:intron
TGGATTACCTTGAAGGGGAG+GGG 0.550048 1_2:-22059764 None:intergenic
TGGACAAGTCACCTTCAAGC+AGG 0.555459 1_2:+22058897 Msa0062510:CDS
GCGTTGTAGATGATACCAAA+AGG 0.565115 1_2:+22058563 Msa0062510:intron
CTTGGATAACAAGGAACAGA+TGG 0.569177 1_2:+22060441 Msa0062510:CDS
ACGAATAGTAGAAGCAGAGA+GGG 0.570331 1_2:-22057960 None:intergenic
AATGACTCAAGTGAAGGTGT+TGG 0.575265 1_2:+22058977 Msa0062510:CDS
AAACTGGCCTGATTTCATGT+TGG 0.576131 1_2:-22060515 None:intergenic
TACAAATTACTTGGATAACA+AGG 0.576875 1_2:+22060432 Msa0062510:CDS
TGATTGTTAGCAAATTGTGA+TGG 0.578116 1_2:-22059529 None:intergenic
GAAGAAAATAAATTGAAAGG+TGG 0.594266 1_2:+22060562 Msa0062510:CDS
GAAAGGATATTCAATCTCAA+GGG 0.599161 1_2:-22058807 None:intergenic
GATACCAAAAGGTTTCACTA+AGG 0.601016 1_2:+22058574 Msa0062510:CDS
ATGTTTCTCAAGACTCCAGA+TGG 0.601949 1_2:+22058623 Msa0062510:CDS
TCCATCTTGAAGAATTGGTG+TGG 0.604101 1_2:-22057999 None:intergenic
TTGAGAAATGACTCAAGTGA+AGG 0.604348 1_2:+22058971 Msa0062510:CDS
CAAGTTGGATTACCTTGAAG+GGG 0.606972 1_2:-22059769 None:intergenic
TTTGCACGATCGCTTAGGTG+TGG 0.611771 1_2:+22062049 Msa0062510:CDS
AGTGATATTTCTACACCTCA+AGG 0.612548 1_2:+22062241 Msa0062510:CDS
GATTGTTAGCAAATTGTGAT+GGG 0.613701 1_2:-22059528 None:intergenic
GTTGGATTACCTTGAAGGGG+AGG 0.616096 1_2:-22059766 None:intergenic
ACACAACAAGTTGAAAATTG+GGG 0.637450 1_2:+22059660 Msa0062510:CDS
AAGCATCATGTCCAATCTAG+TGG 0.644078 1_2:+22059028 Msa0062510:CDS
GTGATATTTCTACACCTCAA+GGG 0.650521 1_2:+22062242 Msa0062510:CDS
AACGAATAGTAGAAGCAGAG+AGG 0.651419 1_2:-22057961 None:intergenic
TGATCAACAAAGTAGTGATG+AGG 0.654895 1_2:+22058859 Msa0062510:CDS
AATATTATGCCAAATCAACG+AGG 0.719522 1_2:+22060260 Msa0062510:CDS
ATATTATGCCAAATCAACGA+GGG 0.724045 1_2:+22060261 Msa0062510:CDS
GAGTGCGACTAAAATCAATG+GGG 0.768451 1_2:+22058661 Msa0062510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAACAAAATATGAA+GGG - chr1_2:22058051-22058070 None:intergenic 10.0%
!! AATTAAAAAACAAAATATGA+AGG - chr1_2:22058052-22058071 None:intergenic 10.0%
!!! TTAATTCTAATTTTTATACA+CGG + chr1_2:22060060-22060079 Msa0062510:intron 10.0%
!!! TTTTTCTTTCAATTATAAAA+TGG - chr1_2:22060844-22060863 None:intergenic 10.0%
!!! TTTTTTAAGTGTAAAAAATT+TGG - chr1_2:22061801-22061820 None:intergenic 10.0%
!!! TTATCTTTTAATTTATCCAA+TGG + chr1_2:22059076-22059095 Msa0062510:intron 15.0%
!!! AAATTTCAATGCATATATTT+TGG - chr1_2:22059374-22059393 None:intergenic 15.0%
!! ATATTATTACTTTCAAAGTA+AGG - chr1_2:22059720-22059739 None:intergenic 15.0%
!!! ATTATTTTGAAGATAAAACA+AGG - chr1_2:22059825-22059844 None:intergenic 15.0%
!!! TTGTTTTATCTTCAAAATAA+TGG + chr1_2:22059824-22059843 Msa0062510:intron 15.0%
!! TAGTAAAGAAATAAATGAAA+TGG - chr1_2:22061611-22061630 None:intergenic 15.0%
!!! CTTTTAGTTTTTCAATATAA+AGG + chr1_2:22062076-22062095 Msa0062510:CDS 15.0%
!!! ATTTGTTAAAAAGAATTCAG+AGG + chr1_2:22059421-22059440 Msa0062510:intron 20.0%
!! TTTGTTAAAAAGAATTCAGA+GGG + chr1_2:22059422-22059441 Msa0062510:intron 20.0%
!!! TATTTTTCTGGAAGAATTAA+AGG + chr1_2:22059616-22059635 Msa0062510:CDS 20.0%
!! AGTAATAATATTTAGACTTG+AGG + chr1_2:22059729-22059748 Msa0062510:CDS 20.0%
!! TTCAAAAGAAAAAAACAAGT+TGG - chr1_2:22059787-22059806 None:intergenic 20.0%
!! AAGATAAAACAAGGTAATAA+AGG - chr1_2:22059816-22059835 None:intergenic 20.0%
!! GAAACTATTATGACAAATAA+AGG + chr1_2:22059909-22059928 Msa0062510:CDS 20.0%
!! ATAATATTGACCTTGAAAAA+TGG - chr1_2:22060248-22060267 None:intergenic 20.0%
!!! TAATTTGTAATGAAGGAATT+TGG - chr1_2:22060421-22060440 None:intergenic 20.0%
!!! TATAACACTTGCTTTTTTAT+TGG + chr1_2:22060919-22060938 Msa0062510:intron 20.0%
!! TTGTTTGATGAAATTTATGT+GGG - chr1_2:22061000-22061019 None:intergenic 20.0%
!! TTTGTTTGATGAAATTTATG+TGG - chr1_2:22061001-22061020 None:intergenic 20.0%
!! TTATATGTGAAAATGACATT+TGG - chr1_2:22061088-22061107 None:intergenic 20.0%
!!! ACTTTTTGTTTATACATACA+AGG + chr1_2:22061251-22061270 Msa0062510:intron 20.0%
!!! CTTTTTGTTTATACATACAA+GGG + chr1_2:22061252-22061271 Msa0062510:intron 20.0%
!! AGTATATGGATATAAATAGT+GGG - chr1_2:22061306-22061325 None:intergenic 20.0%
!! TAGTATATGGATATAAATAG+TGG - chr1_2:22061307-22061326 None:intergenic 20.0%
!!! TTAGTTTTTCAATATAAAGG+AGG + chr1_2:22062079-22062098 Msa0062510:CDS 20.0%
!!! TAGTTTTTCAATATAAAGGA+GGG + chr1_2:22062080-22062099 Msa0062510:CDS 20.0%
!! TGTATTAGATGATAGTAAAT+TGG + chr1_2:22062120-22062139 Msa0062510:CDS 20.0%
!!! TTTAATTTGTTCTGCACATT+TGG + chr1_2:22058065-22058084 Msa0062510:intron 25.0%
!! TTTGAATTTTCACTTCATGA+TGG + chr1_2:22058096-22058115 Msa0062510:intron 25.0%
!!! TCTCTCTAAAGTATTAACTT+AGG + chr1_2:22058175-22058194 Msa0062510:intron 25.0%
!!! CTCTCTAAAGTATTAACTTA+GGG + chr1_2:22058176-22058195 Msa0062510:intron 25.0%
!! AAAAATTAACCCTTTGGAAA+TGG + chr1_2:22058214-22058233 Msa0062510:intron 25.0%
!! AAAATTAACCCTTTGGAAAT+GGG + chr1_2:22058215-22058234 Msa0062510:intron 25.0%
!! TATATTTTCAACCCTAAAGA+TGG + chr1_2:22058245-22058264 Msa0062510:intron 25.0%
!! ATATTTTCAACCCTAAAGAT+GGG + chr1_2:22058246-22058265 Msa0062510:intron 25.0%
!!! TTTTTTGTAGATGACGAAAT+GGG - chr1_2:22058280-22058299 None:intergenic 25.0%
!!! TTTTTTTGTAGATGACGAAA+TGG - chr1_2:22058281-22058300 None:intergenic 25.0%
! CATTTGAACAATTTCTCTTA+TGG + chr1_2:22058305-22058324 Msa0062510:intron 25.0%
!! GTCATGTTAACAAATGTTTT+TGG + chr1_2:22058327-22058346 Msa0062510:intron 25.0%
!!! ATGTTAACAAATGTTTTTGG+AGG + chr1_2:22058330-22058349 Msa0062510:intron 25.0%
!!! TGTTAACAAATGTTTTTGGA+GGG + chr1_2:22058331-22058350 Msa0062510:intron 25.0%
! CTTATATGTATGCTAACATA+AGG + chr1_2:22058532-22058551 Msa0062510:intron 25.0%
!!! TTTGTTCATGTTGATTTTCA+TGG - chr1_2:22058832-22058851 None:intergenic 25.0%
! TCATTTCTCAATTTCTTATG+TGG - chr1_2:22058962-22058981 None:intergenic 25.0%
! AATCAAATAATCCTTCTTTC+AGG + chr1_2:22059260-22059279 Msa0062510:CDS 25.0%
! ATAAATATGTGAAGACTTCA+TGG - chr1_2:22059290-22059309 None:intergenic 25.0%
! ACATATTTATAGTCATTCCT+TGG + chr1_2:22059300-22059319 Msa0062510:CDS 25.0%
!!! ACATACTGCATTTTAATTTC+GGG - chr1_2:22059508-22059527 None:intergenic 25.0%
!!! GACATACTGCATTTTAATTT+CGG - chr1_2:22059509-22059528 None:intergenic 25.0%
!! TACACAACAAGTTGAAAATT+GGG + chr1_2:22059659-22059678 Msa0062510:CDS 25.0%
! TTACTTTCAAAGTAAGGTAT+TGG - chr1_2:22059714-22059733 None:intergenic 25.0%
! TTCCTTCATTACAAATTACT+TGG + chr1_2:22060423-22060442 Msa0062510:CDS 25.0%
!! ATCCAAGTAATTTGTAATGA+AGG - chr1_2:22060428-22060447 None:intergenic 25.0%
! TACAAATTACTTGGATAACA+AGG + chr1_2:22060432-22060451 Msa0062510:CDS 25.0%
! TGGGAAGAAAATAAATTGAA+AGG + chr1_2:22060559-22060578 Msa0062510:CDS 25.0%
! GAAGAAAATAAATTGAAAGG+TGG + chr1_2:22060562-22060581 Msa0062510:CDS 25.0%
!! CTTAATGTTCATATTTTCAG+AGG + chr1_2:22060628-22060647 Msa0062510:intron 25.0%
! AGGGTGAAATTTACTTTAAA+AGG + chr1_2:22060810-22060829 Msa0062510:intron 25.0%
! TTTATTGGATGAAACTAATG+TGG + chr1_2:22060934-22060953 Msa0062510:intron 25.0%
!!! GATGCTTTAGAAAAGATTAA+TGG - chr1_2:22061577-22061596 None:intergenic 25.0%
! AAAAATCAAACCATGAATGA+AGG - chr1_2:22061650-22061669 None:intergenic 25.0%
! TATCTTTCTACAAAAATCCT+TGG - chr1_2:22061920-22061939 None:intergenic 25.0%
!! GGATTTTTGTAGAAAGATAT+TGG + chr1_2:22061921-22061940 Msa0062510:CDS 25.0%
ACAGACAAAAATTAACCCTT+TGG + chr1_2:22058208-22058227 Msa0062510:intron 30.0%
AATCTATTCCCATTTCCAAA+GGG - chr1_2:22058226-22058245 None:intergenic 30.0%
TAATCTATTCCCATTTCCAA+AGG - chr1_2:22058227-22058246 None:intergenic 30.0%
GATTTGACATGTCATTCATA+TGG - chr1_2:22058601-22058620 None:intergenic 30.0%
! CTAAAATCAATGGGGATTTT+TGG + chr1_2:22058669-22058688 Msa0062510:CDS 30.0%
!!! ATTTTTGGTTTCAAAAGGGT+TGG + chr1_2:22058684-22058703 Msa0062510:CDS 30.0%
ACACATTATTCACTAGATCA+TGG + chr1_2:22058719-22058738 Msa0062510:CDS 30.0%
CACATTATTCACTAGATCAT+GGG + chr1_2:22058720-22058739 Msa0062510:CDS 30.0%
GAAAGGATATTCAATCTCAA+GGG - chr1_2:22058810-22058829 None:intergenic 30.0%
!!! TCATGTTGATTTTCATGGAA+AGG - chr1_2:22058827-22058846 None:intergenic 30.0%
! TGACTTGTCCAAAATTTCAA+TGG - chr1_2:22058888-22058907 None:intergenic 30.0%
CAAGAATTATACCACTAGAT+TGG - chr1_2:22059042-22059061 None:intergenic 30.0%
TTCGACTTCAAAATTTCCAT+TGG - chr1_2:22059095-22059114 None:intergenic 30.0%
! TATGTTGTTCATTTTCCTAG+AGG + chr1_2:22059129-22059148 Msa0062510:intron 30.0%
AATTAATCAAAGACTCACCA+AGG - chr1_2:22059320-22059339 None:intergenic 30.0%
GATTGTTAGCAAATTGTGAT+GGG - chr1_2:22059531-22059550 None:intergenic 30.0%
TGATTGTTAGCAAATTGTGA+TGG - chr1_2:22059532-22059551 None:intergenic 30.0%
! TGGGATGCTAAATATTTTTC+TGG + chr1_2:22059604-22059623 Msa0062510:CDS 30.0%
!! TTTTCTGGAAGAATTAAAGG+TGG + chr1_2:22059619-22059638 Msa0062510:CDS 30.0%
! GTACACAACAAGTTGAAAAT+TGG + chr1_2:22059658-22059677 Msa0062510:CDS 30.0%
! ACACAACAAGTTGAAAATTG+GGG + chr1_2:22059660-22059679 Msa0062510:CDS 30.0%
ACTAATTATAGTAACTCGAG+TGG + chr1_2:22059970-22059989 Msa0062510:intron 30.0%
AAACCGAAAAAACTTCATTG+CGG + chr1_2:22060159-22060178 Msa0062510:CDS 30.0%
!! CTCCAAATATCCATTTTTCA+AGG + chr1_2:22060235-22060254 Msa0062510:CDS 30.0%
GACCTTGAAAAATGGATATT+TGG - chr1_2:22060240-22060259 None:intergenic 30.0%
AATATTATGCCAAATCAACG+AGG + chr1_2:22060260-22060279 Msa0062510:CDS 30.0%
ATATTATGCCAAATCAACGA+GGG + chr1_2:22060261-22060280 Msa0062510:CDS 30.0%
! GAAAGTATAACAACACTTGT+TGG - chr1_2:22060356-22060375 None:intergenic 30.0%
! AGATGGTGATGTTAAAGTTT+GGG + chr1_2:22060458-22060477 Msa0062510:CDS 30.0%
TAAAGTTTGGGAAGAAATTG+TGG + chr1_2:22060470-22060489 Msa0062510:CDS 30.0%
GAATAACAATGCAACTTTAC+AGG - chr1_2:22060496-22060515 None:intergenic 30.0%
TGTTATTCCAACATGAAATC+AGG + chr1_2:22060508-22060527 Msa0062510:CDS 30.0%
GTAGTACAGCACAATTATTA+TGG - chr1_2:22060679-22060698 None:intergenic 30.0%
! TTTGAGTTAAGAGAAATGCT+AGG - chr1_2:22061061-22061080 None:intergenic 30.0%
!! GTCATTTTCACATATAAGAC+CGG + chr1_2:22061091-22061110 Msa0062510:intron 30.0%
! TCATTTTCACATATAAGACC+GGG + chr1_2:22061092-22061111 Msa0062510:intron 30.0%
CTAACTCAACGTTACAAAAT+CGG - chr1_2:22061375-22061394 None:intergenic 30.0%
TGTTGAAAAGACATAATGCT+TGG - chr1_2:22061418-22061437 None:intergenic 30.0%
! ACACATTTTTCCTTCATTCA+TGG + chr1_2:22061637-22061656 Msa0062510:intron 30.0%
ATTACTAGTTCGATCTAAGT+TGG + chr1_2:22061857-22061876 Msa0062510:intron 30.0%
TTTGGAAGTTTAAGGGATAT+TGG - chr1_2:22061962-22061981 None:intergenic 30.0%
!! AACCTGATTTGGAAGTTTAA+GGG - chr1_2:22061969-22061988 None:intergenic 30.0%
ATGATATTTGGCTAGTGAAT+TGG + chr1_2:22062020-22062039 Msa0062510:CDS 30.0%
AGCTTTCCATCTTGAAGAAT+TGG - chr1_2:22058007-22058026 None:intergenic 35.0%
GATACCAAAAGGTTTCACTA+AGG + chr1_2:22058574-22058593 Msa0062510:CDS 35.0%
! ATTTCCCAATTTTTGCCATC+TGG - chr1_2:22058641-22058660 None:intergenic 35.0%
ATGAGTGCGACTAAAATCAA+TGG + chr1_2:22058659-22058678 Msa0062510:CDS 35.0%
TGAGTGCGACTAAAATCAAT+GGG + chr1_2:22058660-22058679 Msa0062510:CDS 35.0%
!!! TGGGGATTTTTGGTTTCAAA+AGG + chr1_2:22058679-22058698 Msa0062510:CDS 35.0%
!!! GGGGATTTTTGGTTTCAAAA+GGG + chr1_2:22058680-22058699 Msa0062510:CDS 35.0%
! CGAAGAAAACTCTCATTTTG+TGG + chr1_2:22058763-22058782 Msa0062510:CDS 35.0%
GGAAAGGATATTCAATCTCA+AGG - chr1_2:22058811-22058830 None:intergenic 35.0%
TGATCAACAAAGTAGTGATG+AGG + chr1_2:22058859-22058878 Msa0062510:CDS 35.0%
! TGAGGACTCCATTGAAATTT+TGG + chr1_2:22058877-22058896 Msa0062510:CDS 35.0%
!! GGACACATAATTGGTGATTT+TGG - chr1_2:22058935-22058954 None:intergenic 35.0%
CTCAATTTCTTATGTGGTTG+AGG - chr1_2:22058956-22058975 None:intergenic 35.0%
TTGAGAAATGACTCAAGTGA+AGG + chr1_2:22058971-22058990 Msa0062510:CDS 35.0%
! GTTCATTTTCCTAGAGGATA+CGG + chr1_2:22059135-22059154 Msa0062510:intron 35.0%
! TTCATTTTCCTAGAGGATAC+GGG + chr1_2:22059136-22059155 Msa0062510:intron 35.0%
TTCATGGTAATCCTGAAAGA+AGG - chr1_2:22059274-22059293 None:intergenic 35.0%
! AGAGGGAGTATACTAGTAAT+TGG + chr1_2:22059439-22059458 Msa0062510:intron 35.0%
TGACATTCTTCTTCAACTCT+TGG + chr1_2:22059570-22059589 Msa0062510:CDS 35.0%
ATTCTTCTTCAACTCTTGGA+TGG + chr1_2:22059574-22059593 Msa0062510:CDS 35.0%
TTCTTCTTCAACTCTTGGAT+GGG + chr1_2:22059575-22059594 Msa0062510:CDS 35.0%
!!! CAAAGTAAGGTATTGGCTTT+TGG - chr1_2:22059707-22059726 None:intergenic 35.0%
! ACAAGTTGGATTACCTTGAA+GGG - chr1_2:22059773-22059792 None:intergenic 35.0%
! AACAAGTTGGATTACCTTGA+AGG - chr1_2:22059774-22059793 None:intergenic 35.0%
! CTCGTTGAACTGATTCTAAA+GGG - chr1_2:22059863-22059882 None:intergenic 35.0%
! TCTCGTTGAACTGATTCTAA+AGG - chr1_2:22059864-22059883 None:intergenic 35.0%
ATTATAGTAACTCGAGTGGT+TGG + chr1_2:22059974-22059993 Msa0062510:intron 35.0%
TTATAGTAACTCGAGTGGTT+GGG + chr1_2:22059975-22059994 Msa0062510:intron 35.0%
! CAAGACGCAAACAAATTTTG+AGG + chr1_2:22060022-22060041 Msa0062510:intron 35.0%
!!! ACGTTGTTTTTGTCTCGATA+TGG + chr1_2:22060124-22060143 Msa0062510:intron 35.0%
!!! TGTCCGCAATGAAGTTTTTT+CGG - chr1_2:22060165-22060184 None:intergenic 35.0%
AAAAACTTCATTGCGGACAA+AGG + chr1_2:22060166-22060185 Msa0062510:CDS 35.0%
TGGAGTTGAATTTATCAGCT+TGG - chr1_2:22060220-22060239 None:intergenic 35.0%
! CAGATGGTGATGTTAAAGTT+TGG + chr1_2:22060457-22060476 Msa0062510:CDS 35.0%
!! TAGAGGTTGGAAGCTATTTT+GGG + chr1_2:22060540-22060559 Msa0062510:CDS 35.0%
!! TGTTTTTGAGCTCATCAAGA+GGG + chr1_2:22060594-22060613 Msa0062510:CDS 35.0%
!! GTGTTATAGAGAGTGTCAAA+AGG - chr1_2:22060907-22060926 None:intergenic 35.0%
! GTGGTTTCACACTTTAGAAA+TGG + chr1_2:22060953-22060972 Msa0062510:intron 35.0%
AATCCATGTTCTCATCTGTA+TGG + chr1_2:22061144-22061163 Msa0062510:intron 35.0%
GTTATGTGTGACTTCTTGTA+AGG + chr1_2:22061182-22061201 Msa0062510:intron 35.0%
!! GATATAAATAGTGGGTGACT+CGG - chr1_2:22061298-22061317 None:intergenic 35.0%
CTCGTGTTGAACATAGTATA+TGG - chr1_2:22061320-22061339 None:intergenic 35.0%
! ATGTCTTTTCAACAACACAC+CGG + chr1_2:22061424-22061443 Msa0062510:intron 35.0%
ACTCACGAAGTTCAATAGTT+AGG - chr1_2:22061495-22061514 None:intergenic 35.0%
AAATGAAATGGTACTCGTTG+AGG - chr1_2:22061599-22061618 None:intergenic 35.0%
CAGATTGAAGCAAATTGAGT+TGG - chr1_2:22061698-22061717 None:intergenic 35.0%
! CAACTCAATTTGCTTCAATC+TGG + chr1_2:22061696-22061715 Msa0062510:intron 35.0%
ATCCCTTAAACTTCCAAATC+AGG + chr1_2:22061964-22061983 Msa0062510:CDS 35.0%
!! CAACCTGATTTGGAAGTTTA+AGG - chr1_2:22061970-22061989 None:intergenic 35.0%
! ATTTTGCACTCAACCTGATT+TGG - chr1_2:22061980-22061999 None:intergenic 35.0%
! AGGTTGAGTGCAAAATGTTT+TGG + chr1_2:22061984-22062003 Msa0062510:CDS 35.0%
! GGTTGAGTGCAAAATGTTTT+GGG + chr1_2:22061985-22062004 Msa0062510:CDS 35.0%
!! AAAATGTTTTGGGTACAACG+CGG + chr1_2:22061995-22062014 Msa0062510:CDS 35.0%
TACAACGCGGTTATGATATT+TGG + chr1_2:22062008-22062027 Msa0062510:CDS 35.0%
! AGTGATATTTCTACACCTCA+AGG + chr1_2:22062241-22062260 Msa0062510:CDS 35.0%
! GTGATATTTCTACACCTCAA+GGG + chr1_2:22062242-22062261 Msa0062510:CDS 35.0%
ACGAATAGTAGAAGCAGAGA+GGG - chr1_2:22057963-22057982 None:intergenic 40.0%
AACGAATAGTAGAAGCAGAG+AGG - chr1_2:22057964-22057983 None:intergenic 40.0%
ACCACACCAATTCTTCAAGA+TGG + chr1_2:22057998-22058017 Msa0062510:CDS 40.0%
TCCATCTTGAAGAATTGGTG+TGG - chr1_2:22058002-22058021 None:intergenic 40.0%
GGTTATTCGACCCATCTTTA+GGG - chr1_2:22058259-22058278 None:intergenic 40.0%
TTGGTATCATCTACAACGCA+TGG - chr1_2:22058562-22058581 None:intergenic 40.0%
GCGTTGTAGATGATACCAAA+AGG + chr1_2:22058563-22058582 Msa0062510:intron 40.0%
! TGGTCCTTAGTGAAACCTTT+TGG - chr1_2:22058581-22058600 None:intergenic 40.0%
! TCTGGAGTCTTGAGAAACAT+TGG - chr1_2:22058623-22058642 None:intergenic 40.0%
ATGTTTCTCAAGACTCCAGA+TGG + chr1_2:22058623-22058642 Msa0062510:CDS 40.0%
AGACTCCAGATGGCAAAAAT+TGG + chr1_2:22058633-22058652 Msa0062510:CDS 40.0%
GACTCCAGATGGCAAAAATT+GGG + chr1_2:22058634-22058653 Msa0062510:CDS 40.0%
GAGTGCGACTAAAATCAATG+GGG + chr1_2:22058661-22058680 Msa0062510:CDS 40.0%
TTCACTAGATCATGGGCATA+TGG + chr1_2:22058727-22058746 Msa0062510:CDS 40.0%
!! TTCAATCTCAAGGGTACTCT+TGG - chr1_2:22058801-22058820 None:intergenic 40.0%
!! CTAGTTTTCTTCCTGCTTGA+AGG - chr1_2:22058911-22058930 None:intergenic 40.0%
TGTGGTTGAGGACACATAAT+TGG - chr1_2:22058944-22058963 None:intergenic 40.0%
! AATGACTCAAGTGAAGGTGT+TGG + chr1_2:22058977-22058996 Msa0062510:CDS 40.0%
! CATGATGCTTAGGCAAGTTT+TGG - chr1_2:22059018-22059037 None:intergenic 40.0%
CTAGATTGGACATGATGCTT+AGG - chr1_2:22059028-22059047 None:intergenic 40.0%
AAGCATCATGTCCAATCTAG+TGG + chr1_2:22059028-22059047 Msa0062510:CDS 40.0%
!! CTAGCTCGTGCTTTACTTTT+CGG - chr1_2:22059177-22059196 None:intergenic 40.0%
CAAAAAGCAATACCAAGAGC+AGG + chr1_2:22059210-22059229 Msa0062510:CDS 40.0%
TATTTAACTGCTCCTGCTCT+TGG - chr1_2:22059225-22059244 None:intergenic 40.0%
CTGGAAGAATTAAAGGTGGA+TGG + chr1_2:22059623-22059642 Msa0062510:CDS 40.0%
! CAAGTTGGATTACCTTGAAG+GGG - chr1_2:22059772-22059791 None:intergenic 40.0%
TCAACGAGACAAAGACTTCT+CGG + chr1_2:22059875-22059894 Msa0062510:CDS 40.0%
!! TGTTTTTGTCTCGATATGGC+AGG + chr1_2:22060128-22060147 Msa0062510:intron 40.0%
CTTGGATAACAAGGAACAGA+TGG + chr1_2:22060441-22060460 Msa0062510:CDS 40.0%
! AAACTGGCCTGATTTCATGT+TGG - chr1_2:22060518-22060537 None:intergenic 40.0%
!! AAATCAGGCCAGTTTTGTAG+AGG + chr1_2:22060523-22060542 Msa0062510:CDS 40.0%
! GTAGAGGTTGGAAGCTATTT+TGG + chr1_2:22060539-22060558 Msa0062510:CDS 40.0%
!! GTGTTTTTGAGCTCATCAAG+AGG + chr1_2:22060593-22060612 Msa0062510:CDS 40.0%
! GCAATTGAGATTTGAAGCTG+TGG + chr1_2:22060650-22060669 Msa0062510:intron 40.0%
TTTCACAACAAGCAGCACAT+GGG + chr1_2:22060775-22060794 Msa0062510:intron 40.0%
AAATGGATCCCACGTAAAGT+GGG + chr1_2:22060970-22060989 Msa0062510:intron 40.0%
!! TGTATTCCACTTTTGACTCC+CGG - chr1_2:22061113-22061132 None:intergenic 40.0%
ACACCATACAGATGAGAACA+TGG - chr1_2:22061150-22061169 None:intergenic 40.0%
! CTCAATTTGCTTCAATCTGG+TGG + chr1_2:22061699-22061718 Msa0062510:intron 40.0%
TGTGTTTGCAGATGATTCCA+AGG + chr1_2:22061900-22061919 Msa0062510:intron 40.0%
AAAGATTTGCACGATCGCTT+AGG + chr1_2:22062044-22062063 Msa0062510:CDS 40.0%
TTGTCAATGTTTGTCCCTTG+AGG - chr1_2:22062259-22062278 None:intergenic 40.0%
TCAACCCAGCAAAAAATCAC+AGG + chr1_2:22062298-22062317 Msa0062510:CDS 40.0%
!!! CTTGCCTGTGATTTTTTGCT+GGG - chr1_2:22062305-22062324 None:intergenic 40.0%
!!! ACTTGCCTGTGATTTTTTGC+TGG - chr1_2:22062306-22062325 None:intergenic 40.0%
GGGTTATTCGACCCATCTTT+AGG - chr1_2:22058260-22058279 None:intergenic 45.0%
AACTCTTGGATGGGAGAGTT+TGG + chr1_2:22059584-22059603 Msa0062510:CDS 45.0%
ACTCTTGGATGGGAGAGTTT+GGG + chr1_2:22059585-22059604 Msa0062510:CDS 45.0%
TTGGATTACCTTGAAGGGGA+GGG - chr1_2:22059768-22059787 None:intergenic 45.0%
! TGGGACTGATTTCTCTACGA+CGG + chr1_2:22059994-22060013 Msa0062510:intron 45.0%
GCTTCCAACCTCTACAAAAC+TGG - chr1_2:22060534-22060553 None:intergenic 45.0%
CTTTCACAACAAGCAGCACA+TGG + chr1_2:22060774-22060793 Msa0062510:intron 45.0%
ACATGGGTGCATGTGAAAGA+GGG + chr1_2:22060791-22060810 Msa0062510:intron 45.0%
GAAATGGATCCCACGTAAAG+TGG + chr1_2:22060969-22060988 Msa0062510:intron 45.0%
AATGGATCCCACGTAAAGTG+GGG + chr1_2:22060971-22060990 Msa0062510:intron 45.0%
ATAAGACCGGGAGTCAAAAG+TGG + chr1_2:22061104-22061123 Msa0062510:intron 45.0%
TTCCCTTAGCATCACTTCCA+CGG - chr1_2:22061462-22061481 None:intergenic 45.0%
!!! AAAAATATCAAATTTAATTT+TGG - chr1_2:22060745-22060764 None:intergenic 5.0%
!! AATAAAAAAAAAAAAAAACA+AGG - chr1_2:22061733-22061752 None:intergenic 5.0%
TGGACAAGTCACCTTCAAGC+AGG + chr1_2:22058897-22058916 Msa0062510:CDS 50.0%
TGGATTACCTTGAAGGGGAG+GGG - chr1_2:22059767-22059786 None:intergenic 50.0%
GTTGGATTACCTTGAAGGGG+AGG - chr1_2:22059769-22059788 None:intergenic 50.0%
! GCATCGATGTTCTGCGCATA+TGG + chr1_2:22059941-22059960 Msa0062510:intron 50.0%
TCTCGATATGGCAGGAGAGA+AGG + chr1_2:22060136-22060155 Msa0062510:intron 50.0%
! CTCGAATGCCCTCGTTGATT+TGG - chr1_2:22060272-22060291 None:intergenic 50.0%
!! TCAACGAGGGCATTCGAGAT+TGG + chr1_2:22060274-22060293 Msa0062510:CDS 50.0%
!! CAGGCCAGTTTTGTAGAGGT+TGG + chr1_2:22060527-22060546 Msa0062510:CDS 50.0%
CACATGGGTGCATGTGAAAG+AGG + chr1_2:22060790-22060809 Msa0062510:intron 50.0%
TTTGCACGATCGCTTAGGTG+TGG + chr1_2:22062049-22062068 Msa0062510:CDS 50.0%
TGGGTCTCCCCACTTTACGT+GGG - chr1_2:22060981-22061000 None:intergenic 55.0%
CAACACACCGGCGTTCACTA+TGG + chr1_2:22061436-22061455 Msa0062510:intron 55.0%
TGGCCGTGGAAGTGATGCTA+AGG + chr1_2:22061456-22061475 Msa0062510:intron 55.0%
GGCCGTGGAAGTGATGCTAA+GGG + chr1_2:22061457-22061476 Msa0062510:intron 55.0%
CGCTAGCACCCGTATCCTCT+AGG - chr1_2:22059147-22059166 None:intergenic 60.0%
CCTTGAAGGGGAGGGGAATG+TGG - chr1_2:22059760-22059779 None:intergenic 60.0%
CCACATTCCCCTCCCCTTCA+AGG + chr1_2:22059757-22059776 Msa0062510:CDS 60.0%
GTGGGTCTCCCCACTTTACG+TGG - chr1_2:22060982-22061001 None:intergenic 60.0%
TCCACGGCCATAGTGAACGC+CGG - chr1_2:22061446-22061465 None:intergenic 60.0%
ACCGGCGTTCACTATGGCCG+TGG + chr1_2:22061442-22061461 Msa0062510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 22057932 22062342 22057932 ID=Msa0062510;Name=Msa0062510
chr1_2 mRNA 22057932 22062342 22057932 ID=Msa0062510-mRNA-1;Parent=Msa0062510;Name=Msa0062510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.87|1|1|8|0|621
chr1_2 exon 22057932 22058027 22057932 ID=Msa0062510-mRNA-1:exon:8134;Parent=Msa0062510-mRNA-1
chr1_2 exon 22058572 22059049 22058572 ID=Msa0062510-mRNA-1:exon:8135;Parent=Msa0062510-mRNA-1
chr1_2 exon 22059149 22059321 22059149 ID=Msa0062510-mRNA-1:exon:8136;Parent=Msa0062510-mRNA-1
chr1_2 exon 22059523 22059778 22059523 ID=Msa0062510-mRNA-1:exon:8137;Parent=Msa0062510-mRNA-1
chr1_2 exon 22059868 22059930 22059868 ID=Msa0062510-mRNA-1:exon:8138;Parent=Msa0062510-mRNA-1
chr1_2 exon 22060150 22060295 22060150 ID=Msa0062510-mRNA-1:exon:8139;Parent=Msa0062510-mRNA-1
chr1_2 exon 22060412 22060633 22060412 ID=Msa0062510-mRNA-1:exon:8140;Parent=Msa0062510-mRNA-1
chr1_2 exon 22061911 22062342 22061911 ID=Msa0062510-mRNA-1:exon:8141;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22057932 22058027 22057932 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22058572 22059049 22058572 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22059149 22059321 22059149 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22059523 22059778 22059523 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22059868 22059930 22059868 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22060150 22060295 22060150 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22060412 22060633 22060412 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
chr1_2 CDS 22061911 22062342 22061911 ID=Msa0062510-mRNA-1:cds;Parent=Msa0062510-mRNA-1
Gene Sequence

>Msa0062510

ATGACTAGCAATAAGGGAACTAAGCATACCCTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACACCAATTCTTCAAGATGGAAAGCTTATGATACCAAAAGGTTTCACTAAGGACCATATGAATGACATGTCAAATCCAATGTTTCTCAAGACTCCAGATGGCAAAAATTGGGAAATGAGTGCGACTAAAATCAATGGGGATTTTTGGTTTCAAAAGGGTTGGAACGAATTTGCTACACATTATTCACTAGATCATGGGCATATGGTATTATTTCAATACGAAGAAAACTCTCATTTTGTGGTTCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCCATGAAAATCAACATGAACAAAGCAACTTTGATCAACAAAGTAGTGATGAGGACTCCATTGAAATTTTGGACAAGTCACCTTCAAGCAGGAAGAAAACTAGACCAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAATGACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGAGGATACGGGTGCTAGCGCTGAATTCCGAAAAGTAAAGCACGAGCTAGAACAAGATCAAGACAAAAAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGTCATTCCTTGTATGTCCCATCACAATTTGCTAACAATCACATGAAGAAAGAGCAAAGTGACATTCTTCTTCAACTCTTGGATGGGAGAGTTTGGGATGCTAAATATTTTTCTGGAAGAATTAAAGGTGGATGGAAGAAATTTGCAGTACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACCAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACATTCCCCTCCCCTTCAAGAATCAGTTCAACGAGACAAAGACTTCTCGGATGTTGAAAGTGAAACTATTATGACAAATAAAGGAGAGAAGGAAACCGAAAAAACTTCATTGCGGACAAAGGCTGAATTCTTTACTAATGAAGCTGAGAACCAAGCTGATAAATTCAACTCCAAATATCCATTTTTCAAGGTCAATATTATGCCAAATCAACGAGGGCATTCGAGATTGCATGTACCAAATTCCTTCATTACAAATTACTTGGATAACAAGGAACAGATGGTGATGTTAAAGTTTGGGAAGAAATTGTGGCCTGTAAAGTTGCATTGTTATTCCAACATGAAATCAGGCCAGTTTTGTAGAGGTTGGAAGCTATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGCATGTGTTTTTGAGCTCATCAAGAGGGAAGATGTTGTGCTTAATATGATTCCAAGGATTTTTGTAGAAAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAATCAGGTTGAGTGCAAAATGTTTTGGGTACAACGCGGTTATGATATTTGGCTAGTGAATTGGAAAAGATTTGCACGATCGCTTAGGTGTGGAGATCTTTTAGTTTTTCAATATAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTAAATTGGAAATTGACTATTCAAGTATGAGATGCAACGACGAACAAGATTCTAACAAGCACTTTAAACAAGAAGAAGAAAGTGATTATGATTGTGTTGAGATTCTGAGTGATATTTCTACACCTCAAGGGACAAACATTGACAAGAAAAAAATTATTATGTCTTCAACCCAGCAAAAAATCACAGGCAAGTTCATCTACTTGATTTGA
Protein sequence

>Msa0062510

MTSNKGTKHTLSASTIRFFRVITTPILQDGKLMIPKGFTKDHMNDMSNPMFLKTPDGKNWEMSATKINGDFWFQKGWNEFATHYSLDHGHMVLFQYEENSHFVVHIFSKSTLEIEYPFHENQHEQSNFDQQSSDEDSIEILDKSPSSRKKTRPKSPIMCPQPHKKLRNDSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKVKHELEQDQDKKQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSHSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYFSGRIKGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHSPPLQESVQRDKDFSDVESETIMTNKGEKETEKTSLRTKAEFFTNEAENQADKFNSKYPFFKVNIMPNQRGHSRLHVPNSFITNYLDNKEQMVMLKFGKKLWPVKLHCYSNMKSGQFCRGWKLFWEENKLKGGDACVFELIKREDVVLNMIPRIFVERYWKDVSNPISLKLPNQVECKMFWVQRGYDIWLVNWKRFARSLRCGDLLVFQYKGGSDFHVIVLDDSKLEIDYSSMRCNDEQDSNKHFKQEEESDYDCVEILSDISTPQGTNIDKKKIIMSSTQQKITGKFIYLI*