Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062550 | KEH40802.1 | 93.525 | 139 | 9 | 0 | 118 | 256 | 245 | 383 | 8.45e-88 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062550 | A0A072VG92 | 93.525 | 139 | 9 | 0 | 118 | 256 | 245 | 383 | 4.04e-88 | 276 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062550 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062550 | MtrunA17_Chr6g0476171 | 53.636 | 220 | 78 | 5 | 55 | 256 | 32 | 245 | 1.18e-64 | 202 |
| Msa0062550 | MtrunA17_Chr1g0163151 | 32.995 | 197 | 105 | 8 | 78 | 256 | 34 | 221 | 5.68e-17 | 77.4 |
| Msa0062550 | MtrunA17_Chr1g0163111 | 44.318 | 88 | 45 | 3 | 170 | 256 | 144 | 228 | 1.74e-16 | 76.3 |
| Msa0062550 | MtrunA17_Chr1g0163131 | 43.182 | 88 | 48 | 1 | 169 | 256 | 221 | 306 | 5.84e-15 | 73.2 |
| Msa0062550 | MtrunA17_Chr1g0163181 | 30.000 | 230 | 97 | 10 | 78 | 256 | 213 | 429 | 7.41e-14 | 70.5 |
| Msa0062550 | MtrunA17_Chr1g0163201 | 42.222 | 90 | 48 | 2 | 167 | 256 | 307 | 392 | 8.68e-14 | 70.5 |
| Msa0062550 | MtrunA17_Chr2g0305931 | 70.000 | 40 | 12 | 0 | 42 | 81 | 172 | 211 | 4.36e-13 | 67.0 |
| Msa0062550 | MtrunA17_Chr8g0343271 | 36.923 | 130 | 50 | 4 | 46 | 170 | 2 | 104 | 6.10e-12 | 64.7 |
| Msa0062550 | MtrunA17_Chr7g0227751 | 67.500 | 40 | 13 | 0 | 42 | 81 | 9 | 48 | 7.77e-12 | 64.7 |
| Msa0062550 | MtrunA17_Chr6g0466851 | 67.500 | 40 | 13 | 0 | 42 | 81 | 377 | 416 | 8.48e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_2:+22107395 | Msa0062550:CDS |
| AAACCATTGATCAATGTTTA+AGG | 0.184588 | 1_2:+22101333 | None:intergenic |
| AAACCATTGATCAATGTTTA+AGG | 0.184588 | 1_2:+22101477 | Msa0062550:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.280428 | 1_2:+22107797 | Msa0062550:CDS |
| AGGGAAGGTATACAATATAT+TGG | 0.284582 | 1_2:+22102162 | Msa0062550:CDS |
| AGCCAGCAGGGTGCGGCTTA+TGG | 0.344081 | 1_2:-22102198 | None:intergenic |
| CACAAGTCCACAAACTTCTC+AGG | 0.369277 | 1_2:-22107322 | None:intergenic |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_2:+22107722 | Msa0062550:CDS |
| TACTGCAGATTCTGTAAGTC+TGG | 0.379353 | 1_2:+22107545 | Msa0062550:intron |
| GACAACACCCGTAAAAGATA+TGG | 0.404989 | 1_2:+22107376 | Msa0062550:CDS |
| GGGAAGGTATACAATATATT+GGG | 0.414732 | 1_2:+22102163 | Msa0062550:CDS |
| GTAGATCCCTGAGAAGTTTG+TGG | 0.428065 | 1_2:+22107315 | Msa0062550:intron |
| TTGATCAATGTTTAAGGTGG+AGG | 0.448251 | 1_2:+22101483 | Msa0062550:CDS |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_2:+22107747 | Msa0062550:CDS |
| CACCATAAGCCGCACCCTGC+TGG | 0.450351 | 1_2:+22102196 | Msa0062550:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_2:+22106159 | Msa0062550:CDS |
| CCACCTTAAACATTGATCAA+TGG | 0.456821 | 1_2:-22101480 | None:intergenic |
| CTCAAACAAGCAAGTGTCTC+CGG | 0.460221 | 1_2:-22107870 | None:intergenic |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_2:-22107707 | None:intergenic |
| TTCAAATAGCCAGCAGGGTG+CGG | 0.461864 | 1_2:-22102205 | None:intergenic |
| GGATTTACATGAGATGTTCA+AGG | 0.497902 | 1_2:+22107566 | Msa0062550:CDS |
| GACTATGGGTGGTTCACTAA+AGG | 0.507216 | 1_2:+22107812 | Msa0062550:CDS |
| AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_2:+22107746 | Msa0062550:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_2:+22107901 | Msa0062550:CDS |
| TATTCTTTCGAAAACCAACT+AGG | 0.522446 | 1_2:-22106104 | None:intergenic |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_2:+22107748 | Msa0062550:CDS |
| GATGCTTTCAAATAGCCAGC+AGG | 0.537906 | 1_2:-22102211 | None:intergenic |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_2:+22106149 | Msa0062550:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_2:+22106125 | Msa0062550:CDS |
| ATAATGAACATCTCGACTAT+GGG | 0.547880 | 1_2:+22107798 | Msa0062550:CDS |
| TTTAGAACGGAATTCAGAGT+TGG | 0.548280 | 1_2:+22102246 | Msa0062550:CDS |
| TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1_2:+22107733 | Msa0062550:CDS |
| TGATCAATGTTTAAGGTGGA+GGG | 0.549620 | 1_2:+22101484 | Msa0062550:CDS |
| TGAAACAGGCGATACCTAGT+TGG | 0.550112 | 1_2:+22106090 | Msa0062550:intron |
| ATGGGTGGTTCACTAAAGGC+TGG | 0.558556 | 1_2:+22107816 | Msa0062550:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_2:+22106160 | Msa0062550:CDS |
| CAGTTGATATTGCTTTAGAA+CGG | 0.568953 | 1_2:+22102233 | Msa0062550:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.574921 | 1_2:+22107386 | Msa0062550:CDS |
| AGAGATTGCAAAGTAAAGAC+CGG | 0.577584 | 1_2:+22107851 | Msa0062550:CDS |
| CCATTGATCAATGTTTAAGG+TGG | 0.597380 | 1_2:+22101480 | Msa0062550:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.600325 | 1_2:+22107759 | Msa0062550:CDS |
| CGTAAAAGATATGGAATATG+CGG | 0.600766 | 1_2:+22107385 | Msa0062550:CDS |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_2:+22106154 | Msa0062550:CDS |
| ACAAGTCCACAAACTTCTCA+GGG | 0.611244 | 1_2:-22107321 | None:intergenic |
| GTGGAGGGAAGGTCATGTGA+AGG | 0.615383 | 1_2:+22101499 | Msa0062550:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_2:+22107710 | Msa0062550:CDS |
| CAATGTTTAAGGTGGAGGGA+AGG | 0.617769 | 1_2:+22101488 | Msa0062550:CDS |
| AGAAGAAGAGACTAAATACA+AGG | 0.622583 | 1_2:+22101451 | Msa0062550:CDS |
| AGGGAAGGTCATGTGAAGGA+TGG | 0.623445 | 1_2:+22101503 | Msa0062550:CDS |
| ATGCTTTCAAATAGCCAGCA+GGG | 0.627876 | 1_2:-22102210 | None:intergenic |
| GGAAGGAACATGGTCTGTAG+AGG | 0.629790 | 1_2:+22107769 | Msa0062550:CDS |
| TTCGCATGGTCAGAAAGGGA+AGG | 0.633158 | 1_2:+22102147 | Msa0062550:intron |
| ATGAACATCTCGACTATGGG+TGG | 0.635276 | 1_2:+22107801 | Msa0062550:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_2:+22106130 | Msa0062550:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_2:+22107752 | Msa0062550:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.648324 | 1_2:+22106165 | Msa0062550:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_2:+22106126 | Msa0062550:CDS |
| AGGTCATGTGAAGGATGGCG+TGG | 0.666612 | 1_2:+22101508 | Msa0062550:CDS |
| TGGACTTGTGCAGAAAACCA+AGG | 0.671628 | 1_2:+22107335 | Msa0062550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATACAAATTTTTCA+AGG | + | chr1_2:22107113-22107132 | Msa0062550:intron | 10.0% |
| !!! | TTTTTTTTTCACTTTTCTTT+TGG | + | chr1_2:22102571-22102590 | Msa0062550:intron | 15.0% |
| !! | ACAATCATGTTAAAATTATT+AGG | - | chr1_2:22103669-22103688 | None:intergenic | 15.0% |
| !!! | AATAATTTTAACATGATTGT+AGG | + | chr1_2:22103669-22103688 | Msa0062550:intron | 15.0% |
| !! | TTAATAGAGATTTATTAATG+TGG | - | chr1_2:22104305-22104324 | None:intergenic | 15.0% |
| !! | AAGTCAAATGTTAAATTTAA+AGG | - | chr1_2:22104371-22104390 | None:intergenic | 15.0% |
| !!! | ATTAAGAGTAAAATAGATTT+TGG | + | chr1_2:22105079-22105098 | Msa0062550:intron | 15.0% |
| !!! | TATTGTTCTTTTGTAATTAT+GGG | - | chr1_2:22105285-22105304 | None:intergenic | 15.0% |
| !!! | TCAATGTATTTTATATTGTT+GGG | - | chr1_2:22105454-22105473 | None:intergenic | 15.0% |
| !!! | ATCAATGTATTTTATATTGT+TGG | - | chr1_2:22105455-22105474 | None:intergenic | 15.0% |
| !! | TGCTTGTAATAAATTAATTA+AGG | - | chr1_2:22106548-22106567 | None:intergenic | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | - | chr1_2:22106930-22106949 | None:intergenic | 15.0% |
| !!! | CTAAGATTAATTTTTATACA+CGG | + | chr1_2:22107172-22107191 | Msa0062550:intron | 15.0% |
| !!! | GTTTTTCAAAACATTAATGT+TGG | - | chr1_2:22101994-22102013 | None:intergenic | 20.0% |
| !!! | AATACCTTTATGTTGATTAT+TGG | + | chr1_2:22102079-22102098 | Msa0062550:intron | 20.0% |
| !! | TAAACCAATAATCAACATAA+AGG | - | chr1_2:22102086-22102105 | None:intergenic | 20.0% |
| !!! | TTTATGTTGATTATTGGTTT+AGG | + | chr1_2:22102085-22102104 | Msa0062550:intron | 20.0% |
| !!! | TTATGTTGATTATTGGTTTA+GGG | + | chr1_2:22102086-22102105 | Msa0062550:intron | 20.0% |
| !!! | TTATGTTGATTAATGCTTTA+GGG | - | chr1_2:22102371-22102390 | None:intergenic | 20.0% |
| !!! | TTTATGTTGATTAATGCTTT+AGG | - | chr1_2:22102372-22102391 | None:intergenic | 20.0% |
| !! | AATCAAAATAGAAAGATAAG+TGG | + | chr1_2:22102808-22102827 | Msa0062550:intron | 20.0% |
| !! | TTGTAACAATACTTTCTAAT+TGG | - | chr1_2:22103000-22103019 | None:intergenic | 20.0% |
| !!! | GGAAATTACATAGATTTTTT+TGG | - | chr1_2:22103356-22103375 | None:intergenic | 20.0% |
| !! | AAGAGATAAAGGAATAAAAT+AGG | - | chr1_2:22103754-22103773 | None:intergenic | 20.0% |
| !!! | ATTTTCTTATTGTAGATCAA+TGG | - | chr1_2:22103902-22103921 | None:intergenic | 20.0% |
| !! | GAAAAAATTGCATATAATCA+TGG | + | chr1_2:22103923-22103942 | Msa0062550:intron | 20.0% |
| !!! | GAATAACATCAAATTTGTTA+GGG | - | chr1_2:22104222-22104241 | None:intergenic | 20.0% |
| !!! | TGAATAACATCAAATTTGTT+AGG | - | chr1_2:22104223-22104242 | None:intergenic | 20.0% |
| !! | AAGTGTAAATAATCAAGATT+TGG | + | chr1_2:22104327-22104346 | Msa0062550:intron | 20.0% |
| !! | ATGTAAACTTAAGATTGAAT+TGG | + | chr1_2:22104687-22104706 | Msa0062550:intron | 20.0% |
| !! | TATTGATCAAAGTAGAAATA+CGG | + | chr1_2:22104824-22104843 | Msa0062550:intron | 20.0% |
| !!! | AAAATAGATTTTGGATAGAT+AGG | + | chr1_2:22105088-22105107 | Msa0062550:intron | 20.0% |
| !!! | CTATTGTTCTTTTGTAATTA+TGG | - | chr1_2:22105286-22105305 | None:intergenic | 20.0% |
| !! | CTCAATATAAAAGAGAATAA+AGG | - | chr1_2:22105371-22105390 | None:intergenic | 20.0% |
| !! | TATTACTGAAAAAGTAGTAT+AGG | - | chr1_2:22105723-22105742 | None:intergenic | 20.0% |
| !! | TATTAACAAGAAAGACATTT+GGG | - | chr1_2:22105824-22105843 | None:intergenic | 20.0% |
| !! | ACTAATAGAAAACATATTCA+AGG | + | chr1_2:22105862-22105881 | Msa0062550:intron | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | - | chr1_2:22106522-22106541 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | + | chr1_2:22107037-22107056 | Msa0062550:intron | 20.0% |
| !! | AACAAAGAAAACATAGTTTA+AGG | - | chr1_2:22107519-22107538 | None:intergenic | 20.0% |
| ! | AAACCATTGATCAATGTTTA+AGG | + | chr1_2:22101477-22101496 | Msa0062550:CDS | 25.0% |
| !! | ATCTCTTTATTTATCTCAAG+AGG | + | chr1_2:22101714-22101733 | Msa0062550:intron | 25.0% |
| ! | TTTATTTATCTCAAGAGGAA+AGG | + | chr1_2:22101719-22101738 | Msa0062550:intron | 25.0% |
| ! | AAATAAGACTGAAAAAACTC+AGG | + | chr1_2:22101845-22101864 | Msa0062550:intron | 25.0% |
| !!! | AATGTTTTGAAAAACATTCC+CGG | + | chr1_2:22101999-22102018 | Msa0062550:intron | 25.0% |
| ! | TAGTAAGTAATTAAATACCC+CGG | - | chr1_2:22102021-22102040 | None:intergenic | 25.0% |
| ! | AAAATCCAAAGTTCATCAAT+TGG | - | chr1_2:22102512-22102531 | None:intergenic | 25.0% |
| ! | ATTAAGGGATATTATTCAAG+AGG | - | chr1_2:22102536-22102555 | None:intergenic | 25.0% |
| ! | GTTAAGTATGTTCGAATATT+TGG | + | chr1_2:22102674-22102693 | Msa0062550:intron | 25.0% |
| ! | AAACCATTGATCAATGTTTA+AGG | - | chr1_2:22101477-22101496 | None:intergenic | 25.0% |
| !!! | TAAAGACTTTGTTTTTAAGG+AGG | - | chr1_2:22103511-22103530 | None:intergenic | 25.0% |
| ! | TCCTTAAAAACAAAGTCTTT+AGG | + | chr1_2:22103510-22103529 | Msa0062550:intron | 25.0% |
| ! | CCTTAAAAACAAAGTCTTTA+GGG | + | chr1_2:22103511-22103530 | Msa0062550:intron | 25.0% |
| ! | CTTAAAAACAAAGTCTTTAG+GGG | + | chr1_2:22103512-22103531 | Msa0062550:intron | 25.0% |
| ! | TTAAAAACAAAGTCTTTAGG+GGG | + | chr1_2:22103513-22103532 | Msa0062550:intron | 25.0% |
| !! | ATACAATCACTTGTGATTTT+TGG | - | chr1_2:22103563-22103582 | None:intergenic | 25.0% |
| ! | GTTAAAATTATTAGGTGTCA+TGG | - | chr1_2:22103661-22103680 | None:intergenic | 25.0% |
| ! | AGATAAAGGAATAAAATAGG+AGG | - | chr1_2:22103751-22103770 | None:intergenic | 25.0% |
| !!! | AGAGTTGTTTTCATCATTAT+GGG | + | chr1_2:22103827-22103846 | Msa0062550:intron | 25.0% |
| ! | AAAAGTAGAATTCACAGAAA+GGG | + | chr1_2:22103984-22104003 | Msa0062550:intron | 25.0% |
| ! | TAAACCAATTATTGAGTCAA+TGG | + | chr1_2:22104246-22104265 | Msa0062550:intron | 25.0% |
| !!! | GTTTTAAGAGTGTTGAAATT+TGG | - | chr1_2:22104580-22104599 | None:intergenic | 25.0% |
| ! | ATTTCAACACTCTTAAAACT+AGG | + | chr1_2:22104581-22104600 | Msa0062550:intron | 25.0% |
| ! | TTTCAACACTCTTAAAACTA+GGG | + | chr1_2:22104582-22104601 | Msa0062550:intron | 25.0% |
| ! | TCGAAACAAAATTGATCAAT+CGG | + | chr1_2:22104632-22104651 | Msa0062550:intron | 25.0% |
| ! | AGAACAATAGAAAATAAGAG+AGG | + | chr1_2:22105296-22105315 | Msa0062550:intron | 25.0% |
| ! | TAATTGAAAGCTTGATGAAT+TGG | + | chr1_2:22105320-22105339 | Msa0062550:intron | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | + | chr1_2:22105543-22105562 | Msa0062550:intron | 25.0% |
| ! | ATTAACAAGAAAGACATTTG+GGG | - | chr1_2:22105823-22105842 | None:intergenic | 25.0% |
| ! | CTATTAACAAGAAAGACATT+TGG | - | chr1_2:22105825-22105844 | None:intergenic | 25.0% |
| ! | CATAACAAATACTTGTTCAA+CGG | + | chr1_2:22106206-22106225 | Msa0062550:intron | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | + | chr1_2:22106476-22106495 | Msa0062550:intron | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | - | chr1_2:22106972-22106991 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | + | chr1_2:22106971-22106990 | Msa0062550:intron | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | + | chr1_2:22106972-22106991 | Msa0062550:intron | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | + | chr1_2:22107590-22107609 | Msa0062550:CDS | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | + | chr1_2:22107676-22107695 | Msa0062550:intron | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | + | chr1_2:22107733-22107752 | Msa0062550:CDS | 25.0% |
| AAAGTACATGACTTTCTAAC+TGG | + | chr1_2:22101404-22101423 | Msa0062550:intron | 30.0% | |
| AGAAGAAGAGACTAAATACA+AGG | + | chr1_2:22101451-22101470 | Msa0062550:CDS | 30.0% | |
| !! | TGAGTATTTTTGTCGTGTAA+GGG | + | chr1_2:22101788-22101807 | Msa0062550:intron | 30.0% |
| ! | AATTGATGAACTTCGGATTT+TGG | - | chr1_2:22101902-22101921 | None:intergenic | 30.0% |
| ! | CTTTTGCAATTGATGAACTT+CGG | - | chr1_2:22101909-22101928 | None:intergenic | 30.0% |
| AGGAAAAGAGAAAAGATGTT+AGG | + | chr1_2:22101927-22101946 | Msa0062550:intron | 30.0% | |
| !!! | ATGTTTTGAAAAACATTCCC+GGG | + | chr1_2:22102000-22102019 | Msa0062550:intron | 30.0% |
| AGTAAGTAATTAAATACCCC+GGG | - | chr1_2:22102020-22102039 | None:intergenic | 30.0% | |
| ! | AGGGAAGGTATACAATATAT+TGG | + | chr1_2:22102162-22102181 | Msa0062550:CDS | 30.0% |
| ! | GGGAAGGTATACAATATATT+GGG | + | chr1_2:22102163-22102182 | Msa0062550:CDS | 30.0% |
| !! | CAGTTGATATTGCTTTAGAA+CGG | + | chr1_2:22102233-22102252 | Msa0062550:CDS | 30.0% |
| CATCAATTGGAAAAGGAAAA+GGG | - | chr1_2:22102499-22102518 | None:intergenic | 30.0% | |
| TCATCAATTGGAAAAGGAAA+AGG | - | chr1_2:22102500-22102519 | None:intergenic | 30.0% | |
| CAAAGTTCATCAATTGGAAA+AGG | - | chr1_2:22102506-22102525 | None:intergenic | 30.0% | |
| ! | CTTTTCCAATTGATGAACTT+TGG | + | chr1_2:22102504-22102523 | Msa0062550:intron | 30.0% |
| TCCAAGTACTAAGCAATTAA+GGG | - | chr1_2:22102551-22102570 | None:intergenic | 30.0% | |
| ATCCAAGTACTAAGCAATTA+AGG | - | chr1_2:22102552-22102571 | None:intergenic | 30.0% | |
| TGAAATCTTTGTGAATCTTG+TGG | - | chr1_2:22102648-22102667 | None:intergenic | 30.0% | |
| TTCGAAAAACCATATATTCC+AGG | - | chr1_2:22102722-22102741 | None:intergenic | 30.0% | |
| ACTAGAAGAGACTAAATCTA+AGG | - | chr1_2:22102946-22102965 | None:intergenic | 30.0% | |
| CACTCGATCATAATAAAACA+TGG | + | chr1_2:22103146-22103165 | Msa0062550:intron | 30.0% | |
| AATCATCTTAATGATGCTGA+CGG | - | chr1_2:22103317-22103336 | None:intergenic | 30.0% | |
| TGTGTGAATCATCAACATTA+AGG | + | chr1_2:22103400-22103419 | Msa0062550:intron | 30.0% | |
| !!! | CCCTAAAGACTTTGTTTTTA+AGG | - | chr1_2:22103514-22103533 | None:intergenic | 30.0% |
| !! | GGGATTTATTGATTTGTCTA+CGG | + | chr1_2:22103533-22103552 | Msa0062550:intron | 30.0% |
| !! | GGATTTATTGATTTGTCTAC+GGG | + | chr1_2:22103534-22103553 | Msa0062550:intron | 30.0% |
| !! | GATTTATTGATTTGTCTACG+GGG | + | chr1_2:22103535-22103554 | Msa0062550:intron | 30.0% |
| AAAACGTTTGCAAGTTTCAT+TGG | - | chr1_2:22103606-22103625 | None:intergenic | 30.0% | |
| TTATTCCTTTATCTCTTACG+CGG | + | chr1_2:22103757-22103776 | Msa0062550:intron | 30.0% | |
| !! | GAGAGTTGTTTTCATCATTA+TGG | + | chr1_2:22103826-22103845 | Msa0062550:intron | 30.0% |
| AGCACATATGTATGTTATGA+AGG | - | chr1_2:22103958-22103977 | None:intergenic | 30.0% | |
| CAAAAGTAGAATTCACAGAA+AGG | + | chr1_2:22103983-22104002 | Msa0062550:intron | 30.0% | |
| TCAAATCACTTCTTCTTCTT+CGG | - | chr1_2:22104031-22104050 | None:intergenic | 30.0% | |
| !!! | GTTTCTTATTTTGCAACAGT+TGG | - | chr1_2:22104181-22104200 | None:intergenic | 30.0% |
| GTTGCAAAATAAGAAACTAC+TGG | + | chr1_2:22104184-22104203 | Msa0062550:intron | 30.0% | |
| !! | TTAGCCATTGACTCAATAAT+TGG | - | chr1_2:22104253-22104272 | None:intergenic | 30.0% |
| TTATTGAGTCAATGGCTAAT+TGG | + | chr1_2:22104254-22104273 | Msa0062550:intron | 30.0% | |
| ! | GCACATATTTTATGACTTGA+AGG | - | chr1_2:22104462-22104481 | None:intergenic | 30.0% |
| CTCTTAAAACTAGGGTTTAA+AGG | + | chr1_2:22104590-22104609 | Msa0062550:intron | 30.0% | |
| TTCATTAGGAGATAAACCAA+TGG | - | chr1_2:22104914-22104933 | None:intergenic | 30.0% | |
| CTGAGCATATTGATCAAATT+GGG | - | chr1_2:22105000-22105019 | None:intergenic | 30.0% | |
| ACTGAGCATATTGATCAAAT+TGG | - | chr1_2:22105001-22105020 | None:intergenic | 30.0% | |
| ! | CTATATTTTCGTGCAATACT+GGG | + | chr1_2:22105029-22105048 | Msa0062550:intron | 30.0% |
| ! | ATTGATGACAATGAAACTGA+TGG | + | chr1_2:22105469-22105488 | Msa0062550:intron | 30.0% |
| !! | AAACTGATGGATTGAATGTA+TGG | + | chr1_2:22105482-22105501 | Msa0062550:intron | 30.0% |
| !! | AACTGATGGATTGAATGTAT+GGG | + | chr1_2:22105483-22105502 | Msa0062550:intron | 30.0% |
| TATTCATTCCTAGAACGTTA+CGG | - | chr1_2:22105514-22105533 | None:intergenic | 30.0% | |
| GATAATATGAGAGTGAAACT+AGG | - | chr1_2:22105661-22105680 | None:intergenic | 30.0% | |
| AACTAGAAGAAGAGACATTT+AGG | + | chr1_2:22105967-22105986 | Msa0062550:intron | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | - | chr1_2:22106107-22106126 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | + | chr1_2:22106125-22106144 | Msa0062550:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | + | chr1_2:22106126-22106145 | Msa0062550:CDS | 30.0% | |
| AAACAACAGTAATAAGTGGA+CGG | - | chr1_2:22106335-22106354 | None:intergenic | 30.0% | |
| ACACAAACAACAGTAATAAG+TGG | - | chr1_2:22106339-22106358 | None:intergenic | 30.0% | |
| GAGATATGAAAAGCCAAAAA+AGG | - | chr1_2:22106492-22106511 | None:intergenic | 30.0% | |
| !! | ATGAGGTTTTATGACAGTAA+GGG | - | chr1_2:22106863-22106882 | None:intergenic | 30.0% |
| !! | GTGTTGTCTTTGATTTTTCT+TGG | - | chr1_2:22107364-22107383 | None:intergenic | 30.0% |
| ! | GCATATTCCATATCTTTTAC+GGG | - | chr1_2:22107386-22107405 | None:intergenic | 30.0% |
| ! | CGCATATTCCATATCTTTTA+CGG | - | chr1_2:22107387-22107406 | None:intergenic | 30.0% |
| CGTAAAAGATATGGAATATG+CGG | + | chr1_2:22107385-22107404 | Msa0062550:CDS | 30.0% | |
| GTAAAAGATATGGAATATGC+GGG | + | chr1_2:22107386-22107405 | Msa0062550:CDS | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | + | chr1_2:22107411-22107430 | Msa0062550:CDS | 30.0% |
| !! | CACAAAAACACATGGTTTTA+GGG | + | chr1_2:22107439-22107458 | Msa0062550:CDS | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | + | chr1_2:22107440-22107459 | Msa0062550:CDS | 30.0% |
| ! | AAGAAGCATGGTATATTTAG+TGG | + | chr1_2:22107722-22107741 | Msa0062550:CDS | 30.0% |
| TATAATGAACATCTCGACTA+TGG | + | chr1_2:22107797-22107816 | Msa0062550:CDS | 30.0% | |
| ATAATGAACATCTCGACTAT+GGG | + | chr1_2:22107798-22107817 | Msa0062550:CDS | 30.0% | |
| CCACCTTAAACATTGATCAA+TGG | - | chr1_2:22102914-22102933 | None:intergenic | 35.0% | |
| CCATTGATCAATGTTTAAGG+TGG | + | chr1_2:22101480-22101499 | Msa0062550:CDS | 35.0% | |
| ! | TTGATCAATGTTTAAGGTGG+AGG | + | chr1_2:22101483-22101502 | Msa0062550:CDS | 35.0% |
| ! | TGATCAATGTTTAAGGTGGA+GGG | + | chr1_2:22101484-22101503 | Msa0062550:CDS | 35.0% |
| ! | GCAAACTTGTCTTTTCCATA+AGG | + | chr1_2:22101670-22101689 | Msa0062550:intron | 35.0% |
| TCCATAAGGCCATATATTTC+AGG | + | chr1_2:22101684-22101703 | Msa0062550:intron | 35.0% | |
| ATAGAGTCGCCTGAAATATA+TGG | - | chr1_2:22101696-22101715 | None:intergenic | 35.0% | |
| AAAGGAAACATCCAGCTATA+GGG | + | chr1_2:22101737-22101756 | Msa0062550:intron | 35.0% | |
| !! | GTGAGTATTTTTGTCGTGTA+AGG | + | chr1_2:22101787-22101806 | Msa0062550:intron | 35.0% |
| !! | GAGTATTTTTGTCGTGTAAG+GGG | + | chr1_2:22101789-22101808 | Msa0062550:intron | 35.0% |
| CTGAAAAAACTCAGGTACTA+AGG | + | chr1_2:22101853-22101872 | Msa0062550:intron | 35.0% | |
| CGAAGTTCATCAATTGCAAA+AGG | + | chr1_2:22101907-22101926 | Msa0062550:intron | 35.0% | |
| !!! | TGTTTTGAAAAACATTCCCG+GGG | + | chr1_2:22102001-22102020 | Msa0062550:intron | 35.0% |
| GACAACATGTACAATGAACA+AGG | - | chr1_2:22102119-22102138 | None:intergenic | 35.0% | |
| ! | TTTAGAACGGAATTCAGAGT+TGG | + | chr1_2:22102246-22102265 | Msa0062550:CDS | 35.0% |
| GACAACAAGTATAGTGAAGA+AGG | + | chr1_2:22102338-22102357 | Msa0062550:intron | 35.0% | |
| TCCCTTAATTGCTTAGTACT+TGG | + | chr1_2:22102547-22102566 | Msa0062550:intron | 35.0% | |
| !! | TGTAATGGGTATGAGGTTAA+GGG | - | chr1_2:22102622-22102641 | None:intergenic | 35.0% |
| ATAGAGTCACCTGGAATATA+TGG | + | chr1_2:22102710-22102729 | Msa0062550:intron | 35.0% | |
| ! | TGATCAATGTTTAAGGTGGA+GGG | - | chr1_2:22101484-22101503 | None:intergenic | 35.0% |
| ! | TTGATCAATGTTTAAGGTGG+AGG | - | chr1_2:22101483-22101502 | None:intergenic | 35.0% |
| CCATTGATCAATGTTTAAGG+TGG | - | chr1_2:22101480-22101499 | None:intergenic | 35.0% | |
| CCACCTTAAACATTGATCAA+TGG | + | chr1_2:22102914-22102933 | Msa0062550:intron | 35.0% | |
| ACCAATATCCATACCACATA+GGG | - | chr1_2:22103073-22103092 | None:intergenic | 35.0% | |
| AACCAATATCCATACCACAT+AGG | - | chr1_2:22103074-22103093 | None:intergenic | 35.0% | |
| CTATGTAATTTCCTAGCAAG+TGG | + | chr1_2:22103363-22103382 | Msa0062550:intron | 35.0% | |
| TATATGTACTTCCACTTGCT+AGG | - | chr1_2:22103377-22103396 | None:intergenic | 35.0% | |
| !! | GTTTTAGCGTTAGACTCAAT+TGG | + | chr1_2:22103621-22103640 | Msa0062550:intron | 35.0% |
| ! | TTAGGTGTCATGGAATGATA+TGG | - | chr1_2:22103651-22103670 | None:intergenic | 35.0% |
| ATTATCCGCGTAAGAGATAA+AGG | - | chr1_2:22103765-22103784 | None:intergenic | 35.0% | |
| TTCCTCATTGGTAGGATAAT+AGG | + | chr1_2:22103857-22103876 | Msa0062550:intron | 35.0% | |
| ATCAAAGTAGAAATACGGTG+TGG | + | chr1_2:22104829-22104848 | Msa0062550:intron | 35.0% | |
| TGTTGCTCATAGTTTAGCTA+AGG | - | chr1_2:22104891-22104910 | None:intergenic | 35.0% | |
| TAAACTATGAGCAACACCAT+TGG | + | chr1_2:22104895-22104914 | Msa0062550:intron | 35.0% | |
| ACTCTGATGTGAAGTTCATT+AGG | - | chr1_2:22104928-22104947 | None:intergenic | 35.0% | |
| ! | GCTATATTTTCGTGCAATAC+TGG | + | chr1_2:22105028-22105047 | Msa0062550:intron | 35.0% |
| CTTAATATTTCCAACACCCT+AGG | - | chr1_2:22105065-22105084 | None:intergenic | 35.0% | |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | + | chr1_2:22105550-22105569 | Msa0062550:intron | 35.0% |
| GTGAAACTAGGATTCTCATT+GGG | - | chr1_2:22105649-22105668 | None:intergenic | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | - | chr1_2:22105650-22105669 | None:intergenic | 35.0% | |
| TTATCACCATATCACGTTGA+AGG | + | chr1_2:22105676-22105695 | Msa0062550:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTACTAG+AGG | + | chr1_2:22105768-22105787 | Msa0062550:intron | 35.0% |
| ATTCATGCATGAAATGTGCA+AGG | - | chr1_2:22106037-22106056 | None:intergenic | 35.0% | |
| TTTATACCATGACCTGAAAC+AGG | + | chr1_2:22106076-22106095 | Msa0062550:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | + | chr1_2:22106149-22106168 | Msa0062550:CDS | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | + | chr1_2:22106154-22106173 | Msa0062550:CDS | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | + | chr1_2:22106210-22106229 | Msa0062550:intron | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | + | chr1_2:22106257-22106276 | Msa0062550:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | + | chr1_2:22106262-22106281 | Msa0062550:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | + | chr1_2:22106300-22106319 | Msa0062550:intron | 35.0% | |
| AACAACAGTAATAAGTGGAC+GGG | - | chr1_2:22106334-22106353 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | + | chr1_2:22106600-22106619 | Msa0062550:intron | 35.0% | |
| TCTGATCTACAGATGTTCTT+CGG | + | chr1_2:22106791-22106810 | Msa0062550:intron | 35.0% | |
| !! | TGAGGTTTTATGACAGTAAG+GGG | - | chr1_2:22106862-22106881 | None:intergenic | 35.0% |
| !! | CATGAGGTTTTATGACAGTA+AGG | - | chr1_2:22106864-22106883 | None:intergenic | 35.0% |
| GTCATAAAACCTCATGATGA+AGG | + | chr1_2:22106868-22106887 | Msa0062550:intron | 35.0% | |
| AACCTCATGATGAAGGATAA+TGG | + | chr1_2:22106875-22106894 | Msa0062550:intron | 35.0% | |
| ! | TCATGATGAAGGATAATGGT+GGG | + | chr1_2:22106879-22106898 | Msa0062550:intron | 35.0% |
| CTAAAAGTGATATATCTGCG+AGG | + | chr1_2:22107203-22107222 | Msa0062550:intron | 35.0% | |
| ! | TTGATTTTTCTTGGACTCCT+TGG | - | chr1_2:22107355-22107374 | None:intergenic | 35.0% |
| ! | GCACAAAAACACATGGTTTT+AGG | + | chr1_2:22107438-22107457 | Msa0062550:CDS | 35.0% |
| GGATTTACATGAGATGTTCA+AGG | + | chr1_2:22107566-22107585 | Msa0062550:CDS | 35.0% | |
| CACACACATAGCTATATACA+TGG | - | chr1_2:22107640-22107659 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+CGG | + | chr1_2:22107851-22107870 | Msa0062550:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1_2:22107901-22107920 | Msa0062550:CDS | 35.0% | |
| ! | GCCTGAAATATATGGCCTTA+TGG | - | chr1_2:22101688-22101707 | None:intergenic | 40.0% |
| GAAAGGAAACATCCAGCTAT+AGG | + | chr1_2:22101736-22101755 | Msa0062550:intron | 40.0% | |
| GTTAAGTATGTCCCTATAGC+TGG | - | chr1_2:22101751-22101770 | None:intergenic | 40.0% | |
| !! | TTTTGTCGTGTAAGGGGTAT+AGG | + | chr1_2:22101795-22101814 | Msa0062550:intron | 40.0% |
| ! | TTTGTCGTGTAAGGGGTATA+GGG | + | chr1_2:22101796-22101815 | Msa0062550:intron | 40.0% |
| TTTCTGACCATGCGAAAAGT+AGG | - | chr1_2:22102143-22102162 | None:intergenic | 40.0% | |
| ! | TACTTTTCGCATGGTCAGAA+AGG | + | chr1_2:22102142-22102161 | Msa0062550:intron | 40.0% |
| ! | ACTTTTCGCATGGTCAGAAA+GGG | + | chr1_2:22102143-22102162 | Msa0062550:intron | 40.0% |
| ATGCTTTCAAATAGCCAGCA+GGG | - | chr1_2:22102213-22102232 | None:intergenic | 40.0% | |
| !! | GTGTAATGGGTATGAGGTTA+AGG | - | chr1_2:22102623-22102642 | None:intergenic | 40.0% |
| GAATCTTGTGGTCGTGTAAT+GGG | - | chr1_2:22102636-22102655 | None:intergenic | 40.0% | |
| TGAATCTTGTGGTCGTGTAA+TGG | - | chr1_2:22102637-22102656 | None:intergenic | 40.0% | |
| GCAAAAGTTTCTCATTCCTC+CGG | + | chr1_2:22103248-22103267 | Msa0062550:intron | 40.0% | |
| TTACGAAAGCCTGATATCTC+CGG | - | chr1_2:22103270-22103289 | None:intergenic | 40.0% | |
| ! | GCGGATAATTTTCTTCACAG+CGG | + | chr1_2:22103776-22103795 | Msa0062550:intron | 40.0% |
| ATGGGAGTCAATTTCCTCAT+TGG | + | chr1_2:22103845-22103864 | Msa0062550:intron | 40.0% | |
| GAGTCAATTTCCTCATTGGT+AGG | + | chr1_2:22103849-22103868 | Msa0062550:intron | 40.0% | |
| GACCTATTATCCTACCAATG+AGG | - | chr1_2:22103862-22103881 | None:intergenic | 40.0% | |
| AGTAGAATTCACAGAAAGGG+TGG | + | chr1_2:22103987-22104006 | Msa0062550:intron | 40.0% | |
| AAGGGTGGACATATAGTTGA+TGG | + | chr1_2:22104002-22104021 | Msa0062550:intron | 40.0% | |
| AGGGTGGACATATAGTTGAT+GGG | + | chr1_2:22104003-22104022 | Msa0062550:intron | 40.0% | |
| GCATACTCTTACTGGCATAA+TGG | - | chr1_2:22104432-22104451 | None:intergenic | 40.0% | |
| GAATGTGTGCATACTCTTAC+TGG | - | chr1_2:22104440-22104459 | None:intergenic | 40.0% | |
| AATATTTCCAACACCCTAGG+AGG | - | chr1_2:22105062-22105081 | None:intergenic | 40.0% | |
| ! | AGAATAAAGGCACAGAGACA+TGG | - | chr1_2:22105358-22105377 | None:intergenic | 40.0% |
| ATTGTTGGGAAATGCTGCAA+CGG | - | chr1_2:22105440-22105459 | None:intergenic | 40.0% | |
| ATTCTCATTGGGATGCTCAA+TGG | - | chr1_2:22105638-22105657 | None:intergenic | 40.0% | |
| CTATCACCTTCAACGTGATA+TGG | - | chr1_2:22105685-22105704 | None:intergenic | 40.0% | |
| CGTTGAAGGTGATAGAAGAT+TGG | + | chr1_2:22105690-22105709 | Msa0062550:intron | 40.0% | |
| TTTGTACCTAACTGTGTGAG+AGG | + | chr1_2:22105750-22105769 | Msa0062550:intron | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | + | chr1_2:22106130-22106149 | Msa0062550:CDS | 40.0% | |
| ATTTGTCTCACTTCTTTCCG+AGG | - | chr1_2:22106247-22106266 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | + | chr1_2:22106267-22106286 | Msa0062550:intron | 40.0% |
| ACATACATTGGACAGTGTGT+AGG | - | chr1_2:22106423-22106442 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCACACATACAT+TGG | - | chr1_2:22106435-22106454 | None:intergenic | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | + | chr1_2:22106435-22106454 | Msa0062550:intron | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | + | chr1_2:22106436-22106455 | Msa0062550:intron | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | - | chr1_2:22106595-22106614 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | - | chr1_2:22106601-22106620 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | + | chr1_2:22106599-22106618 | Msa0062550:intron | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | + | chr1_2:22106641-22106660 | Msa0062550:intron | 40.0% | |
| CACCATTATCCTTCATCATG+AGG | - | chr1_2:22106880-22106899 | None:intergenic | 40.0% | |
| ! | CTCATGATGAAGGATAATGG+TGG | + | chr1_2:22106878-22106897 | Msa0062550:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | + | chr1_2:22106901-22106920 | Msa0062550:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | - | chr1_2:22107305-22107324 | None:intergenic | 40.0% | |
| ACAAGTCCACAAACTTCTCA+GGG | - | chr1_2:22107324-22107343 | None:intergenic | 40.0% | |
| GACAACACCCGTAAAAGATA+TGG | + | chr1_2:22107376-22107395 | Msa0062550:CDS | 40.0% | |
| ! | ATGGAATATGCGGGCAATTT+TGG | + | chr1_2:22107395-22107414 | Msa0062550:CDS | 40.0% |
| TACTGCAGATTCTGTAAGTC+TGG | + | chr1_2:22107545-22107564 | Msa0062550:intron | 40.0% | |
| AATTCAGTGGAGTTGAGAGT+AGG | + | chr1_2:22107746-22107765 | Msa0062550:CDS | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | + | chr1_2:22107747-22107766 | Msa0062550:CDS | 40.0% | |
| ! | CAATGTTTAAGGTGGAGGGA+AGG | + | chr1_2:22101488-22101507 | Msa0062550:CDS | 45.0% |
| ! | GTGTAAGGGGTATAGGGTTA+GGG | + | chr1_2:22101802-22101821 | Msa0062550:intron | 45.0% |
| ! | TGTAAGGGGTATAGGGTTAG+GGG | + | chr1_2:22101803-22101822 | Msa0062550:intron | 45.0% |
| !! | GTTGTCTCCTACTTTTCGCA+TGG | + | chr1_2:22102133-22102152 | Msa0062550:intron | 45.0% |
| GATGCTTTCAAATAGCCAGC+AGG | - | chr1_2:22102214-22102233 | None:intergenic | 45.0% | |
| GTTGTCTCCTACTTATCGCA+TGG | - | chr1_2:22102324-22102343 | None:intergenic | 45.0% | |
| AGGGAAGGTCATATGAAGGA+TGG | - | chr1_2:22102894-22102913 | None:intergenic | 45.0% | |
| ! | CAATGTTTAAGGTGGAGGGA+AGG | - | chr1_2:22101488-22101507 | None:intergenic | 45.0% |
| TATATCCCAAACGCCCTATG+TGG | + | chr1_2:22103057-22103076 | Msa0062550:intron | 45.0% | |
| GCCCTATGTGGTATGGATAT+TGG | + | chr1_2:22103069-22103088 | Msa0062550:intron | 45.0% | |
| ATCAGGCTTTCGTAAAGTGC+TGG | + | chr1_2:22103275-22103294 | Msa0062550:intron | 45.0% | |
| CTGACAATGAGATCACGCTT+GGG | - | chr1_2:22103806-22103825 | None:intergenic | 45.0% | |
| TGGCTAATTGGACGAAGCAT+TGG | + | chr1_2:22104266-22104285 | Msa0062550:intron | 45.0% | |
| ! | TACTGGGACATTTTCCTCCT+AGG | + | chr1_2:22105045-22105064 | Msa0062550:intron | 45.0% |
| ! | ACTGGGACATTTTCCTCCTA+GGG | + | chr1_2:22105046-22105065 | Msa0062550:intron | 45.0% |
| ! | ACATTTTCCTCCTAGGGTGT+TGG | + | chr1_2:22105052-22105071 | Msa0062550:intron | 45.0% |
| ! | CAGGGCAGTGATTTTTGTCA+CGG | - | chr1_2:22105138-22105157 | None:intergenic | 45.0% |
| CTGCCCTGAAAGCAAATTTC+CGG | + | chr1_2:22105150-22105169 | Msa0062550:intron | 45.0% | |
| ! | CCACCGGAAATTTGCTTTCA+GGG | - | chr1_2:22105156-22105175 | None:intergenic | 45.0% |
| ! | TCCACCGGAAATTTGCTTTC+AGG | - | chr1_2:22105157-22105176 | None:intergenic | 45.0% |
| GGGAGCAAAACCGGATATAT+GGG | - | chr1_2:22105192-22105211 | None:intergenic | 45.0% | |
| TAAACCTTGGGGAGCAAAAC+CGG | - | chr1_2:22105201-22105220 | None:intergenic | 45.0% | |
| ACGTAGCTGTGTAAACCTTG+GGG | - | chr1_2:22105212-22105231 | None:intergenic | 45.0% | |
| CACGTAGCTGTGTAAACCTT+GGG | - | chr1_2:22105213-22105232 | None:intergenic | 45.0% | |
| ACACGTAGCTGTGTAAACCT+TGG | - | chr1_2:22105214-22105233 | None:intergenic | 45.0% | |
| TTGTGAAGCTCCAACGTGTT+GGG | - | chr1_2:22105256-22105275 | None:intergenic | 45.0% | |
| TTTGTGAAGCTCCAACGTGT+TGG | - | chr1_2:22105257-22105276 | None:intergenic | 45.0% | |
| ! | TAAAGGCACAGAGACATGGA+GGG | - | chr1_2:22105354-22105373 | None:intergenic | 45.0% |
| ! | ATAAAGGCACAGAGACATGG+AGG | - | chr1_2:22105355-22105374 | None:intergenic | 45.0% |
| GAAATGCTGCAACGGATATG+AGG | - | chr1_2:22105432-22105451 | None:intergenic | 45.0% | |
| GGGTTATTCCGTAACGTTCT+AGG | + | chr1_2:22105503-22105522 | Msa0062550:intron | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | + | chr1_2:22105567-22105586 | Msa0062550:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | + | chr1_2:22105568-22105587 | Msa0062550:intron | 45.0% |
| TGAAAGCCTCTCACACAGTT+AGG | - | chr1_2:22105759-22105778 | None:intergenic | 45.0% | |
| ! | AACTAGGTATCGCCTGTTTC+AGG | - | chr1_2:22106091-22106110 | None:intergenic | 45.0% |
| TGAAACAGGCGATACCTAGT+TGG | + | chr1_2:22106090-22106109 | Msa0062550:intron | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | + | chr1_2:22106159-22106178 | Msa0062550:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | + | chr1_2:22106160-22106179 | Msa0062550:CDS | 45.0% |
| CGAAAGCGGTTCTGTCAAAA+TGG | + | chr1_2:22106291-22106310 | Msa0062550:intron | 45.0% | |
| ! | CAGTAATAAGTGGACGGGTT+CGG | - | chr1_2:22106329-22106348 | None:intergenic | 45.0% |
| TCAAGACACACCCTGTTTGA+TGG | - | chr1_2:22106449-22106468 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | - | chr1_2:22106591-22106610 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | - | chr1_2:22106592-22106611 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | - | chr1_2:22106727-22106746 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | - | chr1_2:22106754-22106773 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | + | chr1_2:22106753-22106772 | Msa0062550:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | + | chr1_2:22106754-22106773 | Msa0062550:intron | 45.0% | |
| TTCTTCGGTGAGCAGTTGTT+GGG | + | chr1_2:22106806-22106825 | Msa0062550:intron | 45.0% | |
| !! | TGAAGGATAATGGTGGGTTG+TGG | + | chr1_2:22106885-22106904 | Msa0062550:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | + | chr1_2:22106886-22106905 | Msa0062550:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | - | chr1_2:22107304-22107323 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | - | chr1_2:22107306-22107325 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | + | chr1_2:22107315-22107334 | Msa0062550:intron | 45.0% | |
| CACAAGTCCACAAACTTCTC+AGG | - | chr1_2:22107325-22107344 | None:intergenic | 45.0% | |
| TGGACTTGTGCAGAAAACCA+AGG | + | chr1_2:22107335-22107354 | Msa0062550:CDS | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | + | chr1_2:22107401-22107420 | Msa0062550:CDS | 45.0% |
| AGGAGCTGCACAAAAACACA+TGG | + | chr1_2:22107431-22107450 | Msa0062550:CDS | 45.0% | |
| TGCTTCTTCAACAGCTCACT+TGG | - | chr1_2:22107710-22107729 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | + | chr1_2:22107710-22107729 | Msa0062550:CDS | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | + | chr1_2:22107748-22107767 | Msa0062550:CDS | 45.0% | |
| ATGAACATCTCGACTATGGG+TGG | + | chr1_2:22107801-22107820 | Msa0062550:CDS | 45.0% | |
| GACTATGGGTGGTTCACTAA+AGG | + | chr1_2:22107812-22107831 | Msa0062550:CDS | 45.0% | |
| CTCAAACAAGCAAGTGTCTC+CGG | - | chr1_2:22107873-22107892 | None:intergenic | 45.0% | |
| !!! | TTAGATTTTTATTTTATTAA+TGG | + | chr1_2:22104087-22104106 | Msa0062550:intron | 5.0% |
| !! | AAATAAAATAAAAAACTAAA+AGG | - | chr1_2:22104401-22104420 | None:intergenic | 5.0% |
| !!! | GTTTTTTATTTTATTTTAAT+TGG | + | chr1_2:22104405-22104424 | Msa0062550:intron | 5.0% |
| !! | AAAAAAAAAAACATTATAAA+AGG | - | chr1_2:22104774-22104793 | None:intergenic | 5.0% |
| AGGGAAGGTTGTGTCAAGGA+TGG | + | chr1_2:22101359-22101378 | Msa0062550:intron | 50.0% | |
| GGGAAGGTTGTGTCAAGGAT+GGG | + | chr1_2:22101360-22101379 | Msa0062550:intron | 50.0% | |
| GGAAGGTTGTGTCAAGGATG+GGG | + | chr1_2:22101361-22101380 | Msa0062550:intron | 50.0% | |
| AGGGAAGGTCATGTGAAGGA+TGG | + | chr1_2:22101503-22101522 | Msa0062550:CDS | 50.0% | |
| ! | CGTGTAAGGGGTATAGGGTT+AGG | + | chr1_2:22101801-22101820 | Msa0062550:intron | 50.0% |
| TTCGCATGGTCAGAAAGGGA+AGG | + | chr1_2:22102147-22102166 | Msa0062550:intron | 50.0% | |
| TTCAAATAGCCAGCAGGGTG+CGG | - | chr1_2:22102208-22102227 | None:intergenic | 50.0% | |
| CTACTTATCGCATGGTCGCA+CGG | - | chr1_2:22102316-22102335 | None:intergenic | 50.0% | |
| !! | GTGGTCGTGTAATGGGTATG+AGG | - | chr1_2:22102629-22102648 | None:intergenic | 50.0% |
| CCAGGTGACTCTATCTCAAG+AGG | - | chr1_2:22102704-22102723 | None:intergenic | 50.0% | |
| CCTCTTGAGATAGAGTCACC+TGG | + | chr1_2:22102701-22102720 | Msa0062550:intron | 50.0% | |
| GTGGAGGGAAGGTCATATGA+AGG | - | chr1_2:22102898-22102917 | None:intergenic | 50.0% | |
| ! | CCATACCACATAGGGCGTTT+GGG | - | chr1_2:22103065-22103084 | None:intergenic | 50.0% |
| ! | TCCATACCACATAGGGCGTT+TGG | - | chr1_2:22103066-22103085 | None:intergenic | 50.0% |
| CTCATTCCTCCGGAGATATC+AGG | + | chr1_2:22103258-22103277 | Msa0062550:intron | 50.0% | |
| CCTGACAATGAGATCACGCT+TGG | - | chr1_2:22103807-22103826 | None:intergenic | 50.0% | |
| CCAAGCGTGATCTCATTGTC+AGG | + | chr1_2:22103804-22103823 | Msa0062550:intron | 50.0% | |
| CCCTGAAAGCAAATTTCCGG+TGG | + | chr1_2:22105153-22105172 | Msa0062550:intron | 50.0% | |
| TCCGGTGCAACCCATATATC+CGG | + | chr1_2:22105179-22105198 | Msa0062550:intron | 50.0% | |
| ! | ACCGGATATATGGGTTGCAC+CGG | - | chr1_2:22105183-22105202 | None:intergenic | 50.0% |
| GGGGAGCAAAACCGGATATA+TGG | - | chr1_2:22105193-22105212 | None:intergenic | 50.0% | |
| ! | ATATCCGGTTTTGCTCCCCA+AGG | + | chr1_2:22105194-22105213 | Msa0062550:intron | 50.0% |
| GCAGAGGCTAATGGAAACAC+AGG | + | chr1_2:22105559-22105578 | Msa0062550:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | + | chr1_2:22105562-22105581 | Msa0062550:intron | 50.0% | |
| ! | GTATCGCCTGTTTCAGGTCA+TGG | - | chr1_2:22106085-22106104 | None:intergenic | 50.0% |
| GTTCAACGGTCGGATGTGTA+CGG | + | chr1_2:22106220-22106239 | Msa0062550:intron | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | + | chr1_2:22106221-22106240 | Msa0062550:intron | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | + | chr1_2:22106277-22106296 | Msa0062550:intron | 50.0% |
| !! | GGTCTAACGGAATAACGGGT+GGG | - | chr1_2:22106722-22106741 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | - | chr1_2:22106726-22106745 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | - | chr1_2:22106750-22106769 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | - | chr1_2:22106751-22106770 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | + | chr1_2:22106749-22106768 | Msa0062550:intron | 50.0% | |
| GTTCTTCGGTGAGCAGTTGT+TGG | + | chr1_2:22106805-22106824 | Msa0062550:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | + | chr1_2:22106996-22107015 | Msa0062550:intron | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | + | chr1_2:22107759-22107778 | Msa0062550:CDS | 50.0% | |
| GGAAGGAACATGGTCTGTAG+AGG | + | chr1_2:22107769-22107788 | Msa0062550:CDS | 50.0% | |
| ATGGGTGGTTCACTAAAGGC+TGG | + | chr1_2:22107816-22107835 | Msa0062550:CDS | 50.0% | |
| GTGGAGGGAAGGTTGTGTCA+AGG | + | chr1_2:22101355-22101374 | Msa0062550:intron | 55.0% | |
| AGGTTGTGTCAAGGATGGGG+TGG | + | chr1_2:22101364-22101383 | Msa0062550:intron | 55.0% | |
| GTGGAGGGAAGGTCATGTGA+AGG | + | chr1_2:22101499-22101518 | Msa0062550:CDS | 55.0% | |
| AGGTCATGTGAAGGATGGCG+TGG | + | chr1_2:22101508-22101527 | Msa0062550:CDS | 55.0% | |
| ATGGTCGCACGGTAAGGGAA+AGG | - | chr1_2:22102305-22102324 | None:intergenic | 55.0% | |
| ATCGCATGGTCGCACGGTAA+GGG | - | chr1_2:22102310-22102329 | None:intergenic | 55.0% | |
| TATCGCATGGTCGCACGGTA+AGG | - | chr1_2:22102311-22102330 | None:intergenic | 55.0% | |
| CGTGCGACCATGCGATAAGT+AGG | + | chr1_2:22102314-22102333 | Msa0062550:intron | 55.0% | |
| CCCAAACGCCCTATGTGGTA+TGG | + | chr1_2:22103062-22103081 | Msa0062550:intron | 55.0% | |
| CGAAAGCCTGATATCTCCGG+AGG | - | chr1_2:22103267-22103286 | None:intergenic | 55.0% | |
| AACAGTTGGTCGTGTGTGCG+GGG | - | chr1_2:22104167-22104186 | None:intergenic | 55.0% | |
| CAACAGTTGGTCGTGTGTGC+GGG | - | chr1_2:22104168-22104187 | None:intergenic | 55.0% | |
| GCAACAGTTGGTCGTGTGTG+CGG | - | chr1_2:22104169-22104188 | None:intergenic | 55.0% | |
| GCAAATTTCCGGTGGACCTC+CGG | + | chr1_2:22105161-22105180 | Msa0062550:intron | 55.0% | |
| ! | GGATATATGGGTTGCACCGG+AGG | - | chr1_2:22105180-22105199 | None:intergenic | 55.0% |
| TACAACCGAGCCAAACCACC+CGG | + | chr1_2:22106696-22106715 | Msa0062550:intron | 55.0% | |
| !! | TAACGGAATAACGGGTGGGC+CGG | - | chr1_2:22106718-22106737 | None:intergenic | 55.0% |
| ! | GGGTCTAACGGAATAACGGG+TGG | - | chr1_2:22106723-22106742 | None:intergenic | 55.0% |
| GACGTTGAAACGGTCGGGAA+TGG | + | chr1_2:22106759-22106778 | Msa0062550:intron | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | - | chr1_2:22106852-22106871 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | + | chr1_2:22107752-22107771 | Msa0062550:CDS | 55.0% | |
| ACAGTTGGTCGTGTGTGCGG+GGG | - | chr1_2:22104166-22104185 | None:intergenic | 60.0% | |
| TGCACTCGAGCCCAACACGT+TGG | + | chr1_2:22105243-22105262 | Msa0062550:intron | 60.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | + | chr1_2:22106165-22106184 | Msa0062550:CDS | 60.0% |
| !! | AACGGAATAACGGGTGGGCC+GGG | - | chr1_2:22106717-22106736 | None:intergenic | 60.0% |
| ACGTCAGTTTCGGCGGGTGA+CGG | - | chr1_2:22106744-22106763 | None:intergenic | 60.0% | |
| ! | CGGTCAGTTACGGGCGGATT+CGG | - | chr1_2:22106832-22106851 | None:intergenic | 60.0% |
| CGAATCCGCCCGTAACTGAC+CGG | + | chr1_2:22106830-22106849 | Msa0062550:intron | 60.0% | |
| !! | GGTGAGCACCGGTCAGTTAC+GGG | - | chr1_2:22106841-22106860 | None:intergenic | 60.0% |
| !! | GGGTGAGCACCGGTCAGTTA+CGG | - | chr1_2:22106842-22106861 | None:intergenic | 60.0% |
| CACCATAAGCCGCACCCTGC+TGG | + | chr1_2:22102196-22102215 | Msa0062550:CDS | 65.0% | |
| AGCCAGCAGGGTGCGGCTTA+TGG | - | chr1_2:22102201-22102220 | None:intergenic | 65.0% | |
| GGTCGGATGTGTACGGGCCT+CGG | + | chr1_2:22106227-22106246 | Msa0062550:intron | 65.0% | |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | - | chr1_2:22106735-22106754 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | - | chr1_2:22106743-22106762 | None:intergenic | 65.0% | |
| !! | GAGCACCGGTCAGTTACGGG+CGG | - | chr1_2:22106838-22106857 | None:intergenic | 65.0% |
| GGGTTGCACCGGAGGTCCAC+CGG | - | chr1_2:22105172-22105191 | None:intergenic | 70.0% | |
| TCGCACACTTCACGCGCGCG+TGG | - | chr1_2:22106373-22106392 | None:intergenic | 70.0% | |
| ! | GTGGGCCGGGTGGTTTGGCT+CGG | - | chr1_2:22106704-22106723 | None:intergenic | 70.0% |
| AACGGGTGGGCCGGGTGGTT+TGG | - | chr1_2:22106709-22106728 | None:intergenic | 70.0% | |
| !! | GGAATAACGGGTGGGCCGGG+TGG | - | chr1_2:22106714-22106733 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22101346 | 22107937 | 22101346 | ID=Msa0062550;Name=Msa0062550 |
| chr1_2 | mRNA | 22101346 | 22107937 | 22101346 | ID=Msa0062550-mRNA-1;Parent=Msa0062550;Name=Msa0062550-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.71|1|1|7|0|256 |
| chr1_2 | exon | 22101346 | 22101354 | 22101346 | ID=Msa0062550-mRNA-1:exon:8187;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22101449 | 22101565 | 22101449 | ID=Msa0062550-mRNA-1:exon:8188;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22102160 | 22102267 | 22102160 | ID=Msa0062550-mRNA-1:exon:8189;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22106098 | 22106186 | 22106098 | ID=Msa0062550-mRNA-1:exon:8190;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22107316 | 22107461 | 22107316 | ID=Msa0062550-mRNA-1:exon:8191;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22107553 | 22107611 | 22107553 | ID=Msa0062550-mRNA-1:exon:8192;Parent=Msa0062550-mRNA-1 |
| chr1_2 | exon | 22107695 | 22107937 | 22107695 | ID=Msa0062550-mRNA-1:exon:8193;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22101346 | 22101354 | 22101346 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22101449 | 22101565 | 22101449 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22102160 | 22102267 | 22102160 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22106098 | 22106186 | 22106098 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22107316 | 22107461 | 22107316 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22107553 | 22107611 | 22107553 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| chr1_2 | CDS | 22107695 | 22107937 | 22107695 | ID=Msa0062550-mRNA-1:cds;Parent=Msa0062550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
