Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062570 | KEH26464.1 | 69.474 | 475 | 100 | 6 | 1 | 436 | 2 | 470 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062570 | A0A072U9K2 | 69.474 | 475 | 100 | 6 | 1 | 436 | 2 | 470 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062570 | MtrunA17_Chr6g0476171 | 64.894 | 282 | 39 | 4 | 176 | 436 | 3 | 245 | 7.09e-121 | 352 |
| Msa0062570 | MtrunA17_Chr1g0163101 | 62.827 | 191 | 38 | 3 | 1 | 178 | 1 | 171 | 8.02e-76 | 234 |
| Msa0062570 | MtrunA17_Chr1g0163131 | 39.875 | 321 | 134 | 8 | 5 | 286 | 6 | 306 | 2.83e-64 | 209 |
| Msa0062570 | MtrunA17_Chr1g0163131 | 48.052 | 77 | 38 | 1 | 360 | 436 | 232 | 306 | 1.19e-14 | 74.3 |
| Msa0062570 | MtrunA17_Chr1g0163181 | 31.522 | 460 | 222 | 15 | 26 | 436 | 14 | 429 | 3.61e-62 | 207 |
| Msa0062570 | MtrunA17_Chr1g0163141 | 64.815 | 162 | 43 | 2 | 31 | 178 | 9 | 170 | 9.41e-62 | 198 |
| Msa0062570 | MtrunA17_Chr6g0476181 | 62.264 | 159 | 43 | 2 | 32 | 178 | 1 | 154 | 1.11e-60 | 194 |
| Msa0062570 | MtrunA17_Chr1g0163261 | 40.064 | 312 | 119 | 10 | 17 | 292 | 9 | 288 | 1.39e-57 | 191 |
| Msa0062570 | MtrunA17_Chr1g0162161 | 57.862 | 159 | 38 | 2 | 32 | 178 | 3 | 144 | 3.62e-53 | 175 |
| Msa0062570 | MtrunA17_Chr1g0163201 | 31.674 | 442 | 196 | 17 | 33 | 436 | 19 | 392 | 3.26e-51 | 177 |
| Msa0062570 | MtrunA17_Chr1g0163231 | 38.511 | 309 | 116 | 11 | 17 | 288 | 9 | 280 | 5.60e-48 | 166 |
| Msa0062570 | MtrunA17_Chr1g0163251 | 36.570 | 309 | 129 | 12 | 26 | 298 | 14 | 291 | 1.89e-45 | 162 |
| Msa0062570 | MtrunA17_Chr1g0163081 | 53.459 | 159 | 40 | 3 | 32 | 178 | 5 | 141 | 3.30e-45 | 154 |
| Msa0062570 | MtrunA17_Chr1g0171611 | 35.473 | 296 | 131 | 8 | 17 | 288 | 9 | 268 | 1.86e-41 | 149 |
| Msa0062570 | MtrunA17_Chr1g0163121 | 49.375 | 160 | 41 | 3 | 31 | 178 | 9 | 140 | 4.89e-41 | 142 |
| Msa0062570 | MtrunA17_Chr1g0163161 | 53.741 | 147 | 37 | 4 | 45 | 178 | 1 | 129 | 9.69e-41 | 141 |
| Msa0062570 | MtrunA17_Chr1g0163111 | 33.466 | 251 | 112 | 10 | 207 | 436 | 12 | 228 | 1.66e-33 | 125 |
| Msa0062570 | MtrunA17_Chr1g0163151 | 32.669 | 251 | 104 | 7 | 207 | 436 | 15 | 221 | 2.85e-30 | 116 |
| Msa0062570 | MtrunA17_Chr8g0390841 | 24.335 | 489 | 293 | 19 | 15 | 435 | 37 | 516 | 2.44e-26 | 111 |
| Msa0062570 | MtrunA17_Chr1g0163091 | 46.667 | 135 | 44 | 5 | 185 | 298 | 3 | 130 | 2.12e-23 | 96.3 |
| Msa0062570 | MtrunA17_Chr4g0067431 | 27.329 | 322 | 177 | 14 | 12 | 291 | 10 | 316 | 5.26e-23 | 99.0 |
| Msa0062570 | MtrunA17_Chr1g0162151 | 31.408 | 277 | 89 | 10 | 185 | 434 | 3 | 205 | 7.70e-22 | 93.6 |
| Msa0062570 | MtrunA17_Chr1g0208771 | 23.529 | 459 | 280 | 17 | 33 | 435 | 13 | 456 | 1.39e-21 | 96.7 |
| Msa0062570 | MtrunA17_Chr3g0131891 | 27.414 | 321 | 161 | 15 | 12 | 289 | 14 | 305 | 6.81e-21 | 93.2 |
| Msa0062570 | MtrunA17_Chr7g0233561 | 26.994 | 326 | 170 | 14 | 10 | 289 | 11 | 314 | 1.43e-20 | 92.0 |
| Msa0062570 | MtrunA17_Chr1g0163241 | 36.923 | 130 | 61 | 5 | 33 | 148 | 23 | 145 | 7.89e-19 | 83.6 |
| Msa0062570 | MtrunA17_Chr1g0163071 | 27.010 | 311 | 158 | 13 | 32 | 292 | 1 | 292 | 8.11e-19 | 86.7 |
| Msa0062570 | MtrunA17_Chr1g0163191 | 38.889 | 108 | 48 | 3 | 26 | 115 | 14 | 121 | 2.22e-18 | 82.0 |
| Msa0062570 | MtrunA17_Chr3g0103181 | 24.756 | 307 | 175 | 12 | 7 | 286 | 2 | 279 | 8.58e-18 | 83.2 |
| Msa0062570 | MtrunA17_Chr7g0233521 | 26.510 | 298 | 146 | 11 | 32 | 289 | 1 | 265 | 9.48e-18 | 83.2 |
| Msa0062570 | MtrunA17_Chr1g0163221 | 25.566 | 309 | 184 | 12 | 11 | 291 | 5 | 295 | 4.78e-17 | 82.4 |
| Msa0062570 | MtrunA17_Chr7g0233541 | 24.832 | 298 | 168 | 9 | 32 | 289 | 1 | 282 | 1.00e-15 | 77.4 |
| Msa0062570 | MtrunA17_Chr7g0233531 | 26.263 | 297 | 148 | 11 | 32 | 289 | 1 | 265 | 1.65e-15 | 76.6 |
| Msa0062570 | MtrunA17_Chr7g0233571 | 28.632 | 234 | 124 | 8 | 9 | 220 | 2 | 214 | 2.70e-15 | 74.7 |
| Msa0062570 | MtrunA17_Chr6g0467351 | 39.806 | 103 | 46 | 4 | 14 | 100 | 12 | 114 | 2.76e-15 | 75.1 |
| Msa0062570 | MtrunA17_Chr3g0103151 | 32.394 | 142 | 84 | 5 | 15 | 146 | 10 | 149 | 1.42e-14 | 71.2 |
| Msa0062570 | MtrunA17_Chr5g0419201 | 30.000 | 200 | 103 | 8 | 2 | 178 | 5 | 190 | 3.95e-14 | 70.9 |
| Msa0062570 | MtrunA17_Chr1g0163061 | 39.806 | 103 | 46 | 3 | 14 | 100 | 12 | 114 | 1.76e-13 | 70.5 |
| Msa0062570 | MtrunA17_Chr3g0103191 | 29.452 | 146 | 81 | 5 | 7 | 137 | 2 | 140 | 8.34e-12 | 65.1 |
| Msa0062570 | MtrunA17_Chr3g0103171 | 22.261 | 283 | 168 | 12 | 33 | 286 | 6 | 265 | 2.21e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGTGGGCAATTT+TGG | 0.142869 | 1_2:-22138917 | Msa0062570:CDS |
| GGGAATGGTTCCTTTGTGGC+TGG | 0.297186 | 1_2:+22139203 | None:intergenic |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_2:+22138748 | None:intergenic |
| TAAGAATGGGTACTAGTTCT+TGG | 0.320316 | 1_2:+22141433 | None:intergenic |
| CACATATTCCATATCTTCTT+CGG | 0.325520 | 1_2:+22138928 | None:intergenic |
| AAAAGACATAATATATTTAG+TGG | 0.334344 | 1_2:-22138589 | Msa0062570:CDS |
| TTCCTTTGTGGCTGGGATAA+TGG | 0.345212 | 1_2:+22139211 | None:intergenic |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_2:-22140734 | Msa0062570:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.355043 | 1_2:-22138514 | Msa0062570:CDS |
| TACAACGCGGTGACGATGTT+TGG | 0.370214 | 1_2:-22140710 | Msa0062570:CDS |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_2:+22140631 | None:intergenic |
| GACAATGCCCGAAGAAGATA+TGG | 0.389565 | 1_2:-22138936 | Msa0062570:CDS |
| CTCTGGGAATGGTTCCTTTG+TGG | 0.394208 | 1_2:+22139199 | None:intergenic |
| ACGATGTTTGGCTTCAGAAT+TGG | 0.404471 | 1_2:-22140698 | Msa0062570:CDS |
| TTAATACCTTGAAACTGCTC+TGG | 0.427580 | 1_2:+22139182 | None:intergenic |
| GCCTTAAAACACAAGGTCTC+AGG | 0.437600 | 1_2:-22138874 | Msa0062570:CDS |
| CTCAAACAAGCAAGTGTCTC+CGG | 0.453496 | 1_2:+22138441 | None:intergenic |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_2:-22140733 | Msa0062570:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_2:-22138746 | Msa0062570:CDS |
| GGAATGGTTCCTTTGTGGCT+GGG | 0.456236 | 1_2:+22139204 | None:intergenic |
| CTAGTTCTTGGTCTTGAAGC+TGG | 0.461747 | 1_2:+22141445 | None:intergenic |
| TTGAAGCTGGCGAAGTTGAA+TGG | 0.463192 | 1_2:+22141458 | None:intergenic |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_2:-22139287 | Msa0062570:CDS |
| ACATATTCCATATCTTCTTC+GGG | 0.475083 | 1_2:+22138929 | None:intergenic |
| CGAAGAAGATATGGAATATG+TGG | 0.478018 | 1_2:-22138927 | Msa0062570:CDS |
| CCATTCCCAGAGCAGTTTCA+AGG | 0.485505 | 1_2:-22139188 | Msa0062570:intron |
| TTAGAAGTGTTGATGAGGAC+AGG | 0.485676 | 1_2:-22139385 | Msa0062570:CDS |
| AGTGAAACTAGGATTCTCAT+TGG | 0.490637 | 1_2:+22140018 | None:intergenic |
| TCAATGTCAAGTGTTCACTA+TGG | 0.491973 | 1_2:-22141519 | Msa0062570:CDS |
| TGAAAGTAGGGGAAGGAACA+TGG | 0.498346 | 1_2:-22138552 | Msa0062570:CDS |
| AATTCAGTGGAGTTGAAAGT+AGG | 0.502201 | 1_2:-22138565 | Msa0062570:CDS |
| TTGTCAATGTTTGTCCCTTG+AGG | 0.507957 | 1_2:+22140399 | None:intergenic |
| CCTTGAAACTGCTCTGGGAA+TGG | 0.515549 | 1_2:+22139188 | None:intergenic |
| ACATCGCTTAGACTTCCAAA+TGG | 0.515725 | 1_2:-22140756 | Msa0062570:CDS |
| GAAAATTCGTAGAGAGACAT+TGG | 0.515869 | 1_2:-22140797 | Msa0062570:CDS |
| ATGGCCTTCAACATGAGATC+GGG | 0.518094 | 1_2:+22139985 | None:intergenic |
| GCTGGCGAAGTTGAATGGTT+TGG | 0.518589 | 1_2:+22141463 | None:intergenic |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.519368 | 1_2:-22141499 | Msa0062570:CDS |
| ATTCAGTGGAGTTGAAAGTA+GGG | 0.521113 | 1_2:-22138564 | Msa0062570:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_2:-22138410 | Msa0062570:CDS |
| ACTGTTGCTGCTACACCTCA+AGG | 0.523151 | 1_2:-22140414 | Msa0062570:CDS |
| ATGGTAATTGTGAATGAAAG+TGG | 0.526717 | 1_2:+22139230 | None:intergenic |
| TTTGGAAGTCTAAGCGATGT+TGG | 0.531226 | 1_2:+22140759 | None:intergenic |
| TATATTTAGTGGAAATTCAG+TGG | 0.533043 | 1_2:-22138578 | Msa0062570:CDS |
| TATTCGTTTGAAAACCATGT+AGG | 0.534491 | 1_2:+22139440 | None:intergenic |
| GTGAAACTAGGATTCTCATT+GGG | 0.534567 | 1_2:+22140019 | None:intergenic |
| GACTATGGATGGTTCACTAA+AGG | 0.536976 | 1_2:-22138499 | Msa0062570:CDS |
| TATGGCCTTCAACATGAGAT+CGG | 0.541774 | 1_2:+22139984 | None:intergenic |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_2:-22139419 | Msa0062570:CDS |
| CAATGATGAACAAGAAGCTA+AGG | 0.548779 | 1_2:-22140550 | Msa0062570:CDS |
| CATCGCTTAGACTTCCAAAT+GGG | 0.555762 | 1_2:-22140755 | Msa0062570:CDS |
| ATGGATGGTTCACTAAAGGC+TGG | 0.558556 | 1_2:-22138495 | Msa0062570:CDS |
| TAATACCTTGAAACTGCTCT+GGG | 0.565886 | 1_2:+22139183 | None:intergenic |
| GATAATTTGAGAGTGAAACT+AGG | 0.566910 | 1_2:+22140007 | None:intergenic |
| ATGAACATCTCGACTATGGA+TGG | 0.566956 | 1_2:-22138510 | Msa0062570:CDS |
| TCAAGTGTTCACTATGGACG+TGG | 0.567496 | 1_2:-22141513 | Msa0062570:CDS |
| AGAGATTGCAAAGTAAAGAC+CGG | 0.580024 | 1_2:-22138460 | Msa0062570:CDS |
| AACAATTAGAAGTGTTGATG+AGG | 0.583313 | 1_2:-22139390 | Msa0062570:CDS |
| TTTGCACGCTCTCTCAGATG+TGG | 0.586381 | 1_2:-22140669 | Msa0062570:CDS |
| TTCAGTGGAGTTGAAAGTAG+GGG | 0.586654 | 1_2:-22138563 | Msa0062570:CDS |
| TTTGGCTTCAGAATTGGAAG+CGG | 0.599388 | 1_2:-22140692 | Msa0062570:CDS |
| AATAGAGACAGAGGAGGCCG+CGG | 0.610798 | 1_2:-22140106 | Msa0062570:intron |
| GCAGAGCCTAATAGAGACAG+AGG | 0.621169 | 1_2:-22140115 | Msa0062570:intron |
| CAATGATTATGATTGTGTTG+AGG | 0.625578 | 1_2:-22140505 | Msa0062570:CDS |
| GAAGAAGATATGGAATATGT+GGG | 0.632888 | 1_2:-22138926 | Msa0062570:CDS |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.640577 | 1_2:-22141498 | Msa0062570:CDS |
| CTGTTGCTGCTACACCTCAA+GGG | 0.643334 | 1_2:-22140413 | Msa0062570:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_2:-22139414 | Msa0062570:CDS |
| GTGGAGTTGAAAGTAGGGGA+AGG | 0.644645 | 1_2:-22138559 | Msa0062570:CDS |
| TGTGTTGAGGTTCTGAATGA+CGG | 0.645456 | 1_2:-22140492 | Msa0062570:CDS |
| TAGAAGTGTTGATGAGGACA+GGG | 0.646868 | 1_2:-22139384 | Msa0062570:CDS |
| ATTTCTTAGCTTTCTTACCG+CGG | 0.652512 | 1_2:+22140089 | None:intergenic |
| TGAAACAGAGGATACCTACA+TGG | 0.654303 | 1_2:-22139454 | Msa0062570:intron |
| TACCATTATCCCAGCCACAA+AGG | 0.660933 | 1_2:-22139213 | Msa0062570:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_2:-22139418 | Msa0062570:CDS |
| AACAGCTGCCTTAAAACACA+AGG | 0.666453 | 1_2:-22138881 | Msa0062570:CDS |
| GTGTTGATGAGGACAGGGCA+CGG | 0.684939 | 1_2:-22139379 | Msa0062570:CDS |
| CAAGTGTTCACTATGGACGT+GGG | 0.700697 | 1_2:-22141512 | Msa0062570:CDS |
| GAGCCTAATAGAGACAGAGG+AGG | 0.702252 | 1_2:-22140112 | Msa0062570:intron |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1_2:-22140723 | Msa0062570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGGAATTTATTATCATTAA+TGG | - | chr1_2:22138554-22138573 | Msa0062570:CDS | 15.0% |
| !! | TTTATTATCATTAATGGAAT+TGG | - | chr1_2:22138560-22138579 | Msa0062570:CDS | 15.0% |
| !! | TTATTATCATTAATGGAATT+GGG | - | chr1_2:22138561-22138580 | Msa0062570:CDS | 15.0% |
| !! | AGAAAAAACATAAATAAAGT+GGG | + | chr1_2:22139670-22139689 | None:intergenic | 15.0% |
| !! | AAGAAAAAACATAAATAAAG+TGG | + | chr1_2:22139671-22139690 | None:intergenic | 15.0% |
| !! | CTTGAAAAATAAAATTAAGA+TGG | + | chr1_2:22141069-22141088 | None:intergenic | 15.0% |
| !! | AAAAGACATAATATATTTAG+TGG | - | chr1_2:22141323-22141342 | Msa0062570:intron | 15.0% |
| !! | CTTTCGATTATTATCATAAA+TGG | - | chr1_2:22138535-22138554 | Msa0062570:CDS | 20.0% |
| !!! | ATTTTAGTTTTCCAATACAA+AGG | - | chr1_2:22139270-22139289 | Msa0062570:CDS | 20.0% |
| !!! | AGATTTTCATGTCATTATAT+TGG | - | chr1_2:22139299-22139318 | Msa0062570:CDS | 20.0% |
| !! | AAAAAGAAAATCAACTCAAA+TGG | - | chr1_2:22139468-22139487 | Msa0062570:intron | 20.0% |
| !! | TAAAAACATGTACATTTGTA+TGG | + | chr1_2:22139639-22139658 | None:intergenic | 20.0% |
| !! | AAAATCAAAATAGCTAACAA+TGG | - | chr1_2:22140191-22140210 | Msa0062570:intron | 20.0% |
| !! | TTAAACTTTGATAAAAGCAA+TGG | - | chr1_2:22140565-22140584 | Msa0062570:CDS | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | + | chr1_2:22141167-22141186 | None:intergenic | 20.0% |
| ! | ATCGAAAGAATGAATGAAAA+CGG | + | chr1_2:22138523-22138542 | None:intergenic | 25.0% |
| !! | CAAACAAAATGACTTTAGAA+CGG | + | chr1_2:22138913-22138932 | None:intergenic | 25.0% |
| ! | TATTACTAGTTCAAACTCAT+TGG | - | chr1_2:22139057-22139076 | Msa0062570:intron | 25.0% |
| ! | TATATTGGATGATAGTAGTT+TGG | - | chr1_2:22139314-22139333 | Msa0062570:intron | 25.0% |
| !! | TTGATTTTCTTTTTCTTGAG+GGG | + | chr1_2:22139462-22139481 | None:intergenic | 25.0% |
| !!! | GTTGATTTTCTTTTTCTTGA+GGG | + | chr1_2:22139463-22139482 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTCTTTTTCTTG+AGG | + | chr1_2:22139464-22139483 | None:intergenic | 25.0% |
| !! | CATTTGTATGGATTAAAAAG+TGG | + | chr1_2:22139627-22139646 | None:intergenic | 25.0% |
| !!! | AAATGTACATGTTTTTAGTC+CGG | - | chr1_2:22139642-22139661 | Msa0062570:intron | 25.0% |
| !! | ATCATGGGAAAAAAAAGTAT+AGG | + | chr1_2:22139967-22139986 | None:intergenic | 25.0% |
| !! | AGAGACTTTCATTTTACTAT+AGG | - | chr1_2:22140012-22140031 | Msa0062570:CDS | 25.0% |
| ! | TGTTAACAAGAGAAACATTT+GGG | + | chr1_2:22140068-22140087 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+AGG | - | chr1_2:22140106-22140125 | Msa0062570:intron | 25.0% |
| !! | TTGATTTTCAAATGTGTGTT+TGG | + | chr1_2:22140179-22140198 | None:intergenic | 25.0% |
| ! | AGTTTGATACATTTAAGTAC+TGG | - | chr1_2:22140237-22140256 | Msa0062570:intron | 25.0% |
| ! | TTAACTATATGTAATGTGCA+TGG | + | chr1_2:22140273-22140292 | None:intergenic | 25.0% |
| !! | TTGATTTTCAAATGTGTCTT+TGG | + | chr1_2:22140305-22140324 | None:intergenic | 25.0% |
| ! | AGTTTGATACATTTAAGTAC+TGG | - | chr1_2:22140237-22140256 | Msa0062570:intron | 25.0% |
| ! | TTAACTATATGTAATGTGCA+TGG | + | chr1_2:22140273-22140292 | None:intergenic | 25.0% |
| ! | AGTAGTATGTTTACATTACA+TGG | + | chr1_2:22140890-22140909 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAACAGTTTA+AGG | + | chr1_2:22141121-22141140 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | - | chr1_2:22141166-22141185 | Msa0062570:intron | 25.0% |
| !! | TTTTGTAACATCATTAGACA+AGG | - | chr1_2:22141190-22141209 | Msa0062570:intron | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | - | chr1_2:22141277-22141296 | Msa0062570:intron | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | - | chr1_2:22141334-22141353 | Msa0062570:intron | 25.0% |
| AGAATGAATGAAAACGGAAA+AGG | + | chr1_2:22138517-22138536 | None:intergenic | 30.0% | |
| ATTGAGAAATCTGAACCAAT+TGG | + | chr1_2:22138856-22138875 | None:intergenic | 30.0% | |
| ATCACTTGATGTATACTTTG+CGG | - | chr1_2:22139024-22139043 | Msa0062570:intron | 30.0% | |
| GTCTGAGTTCAAAATGAATT+GGG | - | chr1_2:22139179-22139198 | Msa0062570:intron | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_2:22139273-22139292 | Msa0062570:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_2:22139274-22139293 | Msa0062570:CDS | 30.0% |
| CAATGATTATGATTGTGTTG+AGG | - | chr1_2:22139407-22139426 | Msa0062570:CDS | 30.0% | |
| !!! | AATGTACATGTTTTTAGTCC+GGG | - | chr1_2:22139643-22139662 | Msa0062570:intron | 30.0% |
| AAATGCACAAAAACTGAACA+TGG | - | chr1_2:22139842-22139861 | Msa0062570:intron | 30.0% | |
| AATGCACAAAAACTGAACAT+GGG | - | chr1_2:22139843-22139862 | Msa0062570:intron | 30.0% | |
| GATAATTTGAGAGTGAAACT+AGG | + | chr1_2:22139908-22139927 | None:intergenic | 30.0% | |
| ATAGGAAACATACCAATCTA+TGG | + | chr1_2:22139949-22139968 | None:intergenic | 30.0% | |
| GGTACAAAAATCACTATCAT+GGG | + | chr1_2:22139982-22140001 | None:intergenic | 30.0% | |
| AGGTACAAAAATCACTATCA+TGG | + | chr1_2:22139983-22140002 | None:intergenic | 30.0% | |
| TTAACAAGAGAAACATTTGG+GGG | + | chr1_2:22140066-22140085 | None:intergenic | 30.0% | |
| GTTAACAAGAGAAACATTTG+GGG | + | chr1_2:22140067-22140086 | None:intergenic | 30.0% | |
| CTGTTAACAAGAGAAACATT+TGG | + | chr1_2:22140069-22140088 | None:intergenic | 30.0% | |
| AGCTAACAATAGAGACATTT+AGG | - | chr1_2:22140328-22140347 | Msa0062570:intron | 30.0% | |
| TATTCGTTTGAAAACCATGT+AGG | + | chr1_2:22140475-22140494 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_2:22140493-22140512 | Msa0062570:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_2:22140494-22140513 | Msa0062570:CDS | 30.0% | |
| !! | AACAATTAGAAGTGTTGATG+AGG | - | chr1_2:22140522-22140541 | Msa0062570:CDS | 30.0% |
| ATGGTAATTGTGAATGAAAG+TGG | + | chr1_2:22140685-22140704 | None:intergenic | 30.0% | |
| !! | CTGATTTTATTTGCACTTGT+TGG | + | chr1_2:22140955-22140974 | None:intergenic | 30.0% |
| ACATATTCCATATCTTCTTC+GGG | + | chr1_2:22140986-22141005 | None:intergenic | 30.0% | |
| CACATATTCCATATCTTCTT+CGG | + | chr1_2:22140987-22141006 | None:intergenic | 30.0% | |
| GAAGAAGATATGGAATATGT+GGG | - | chr1_2:22140986-22141005 | Msa0062570:intron | 30.0% | |
| TATAATGAACATCTCGACTA+TGG | - | chr1_2:22141398-22141417 | Msa0062570:intron | 30.0% | |
| ! | TAAGAATGGGTACTAGTTCT+TGG | + | chr1_2:22138482-22138501 | None:intergenic | 35.0% |
| GAAGAAGCTGAGTTAAGAAT+GGG | + | chr1_2:22138495-22138514 | None:intergenic | 35.0% | |
| ATACATACCAACTCTGTAAG+TGG | - | chr1_2:22138651-22138670 | Msa0062570:intron | 35.0% | |
| TACATACCAACTCTGTAAGT+GGG | - | chr1_2:22138652-22138671 | Msa0062570:intron | 35.0% | |
| GCATCATGAAAACAGTATTG+AGG | + | chr1_2:22138715-22138734 | None:intergenic | 35.0% | |
| AGAATAGAGCAAGAATGGAT+AGG | + | chr1_2:22138755-22138774 | None:intergenic | 35.0% | |
| GTATCTACTTGACTTCCAAT+TGG | - | chr1_2:22138838-22138857 | Msa0062570:intron | 35.0% | |
| !! | ACTGATTTGCAAACTGTGTT+GGG | + | chr1_2:22138947-22138966 | None:intergenic | 35.0% |
| !! | AACTGATTTGCAAACTGTGT+TGG | + | chr1_2:22138948-22138967 | None:intergenic | 35.0% |
| AACACAGTTTGCAAATCAGT+TGG | - | chr1_2:22138947-22138966 | Msa0062570:CDS | 35.0% | |
| ! | TGTCTCTCTACGAATTTTCT+TGG | + | chr1_2:22139114-22139133 | None:intergenic | 35.0% |
| GAAAATTCGTAGAGAGACAT+TGG | - | chr1_2:22139115-22139134 | Msa0062570:intron | 35.0% | |
| ! | ATTTTGAACTCAGACCCATT+TGG | + | chr1_2:22139174-22139193 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | - | chr1_2:22139178-22139197 | Msa0062570:intron | 35.0% | |
| AAAATGAATTGGGTACAACG+CGG | - | chr1_2:22139189-22139208 | Msa0062570:CDS | 35.0% | |
| CAATGATGAACAAGAAGCTA+AGG | - | chr1_2:22139362-22139381 | Msa0062570:intron | 35.0% | |
| !!! | CTTGCCTGAAATTTTTTGCA+GGG | + | chr1_2:22139562-22139581 | None:intergenic | 35.0% |
| !!! | ACTTGCCTGAAATTTTTTGC+AGG | + | chr1_2:22139563-22139582 | None:intergenic | 35.0% |
| AACATAAATAAAGTGGGTCC+CGG | + | chr1_2:22139664-22139683 | None:intergenic | 35.0% | |
| ! | ATTTCTTAGCTTTCTTACCG+CGG | + | chr1_2:22139826-22139845 | None:intergenic | 35.0% |
| GTGAAACTAGGATTCTCATT+GGG | + | chr1_2:22139896-22139915 | None:intergenic | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | + | chr1_2:22139897-22139916 | None:intergenic | 35.0% | |
| AGCTAACAATGGAGACATTT+AGG | - | chr1_2:22140202-22140221 | Msa0062570:intron | 35.0% | |
| TAAATCATGACCTGAAACAG+AGG | - | chr1_2:22140446-22140465 | Msa0062570:CDS | 35.0% | |
| !!! | CAATGGCAGTTTTTTAATGC+AGG | - | chr1_2:22140582-22140601 | Msa0062570:CDS | 35.0% |
| !!! | GTTTTTTAATGCAGGTTGGT+TGG | - | chr1_2:22140590-22140609 | Msa0062570:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | - | chr1_2:22140606-22140625 | Msa0062570:intron | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | - | chr1_2:22140625-22140644 | Msa0062570:intron | 35.0% | |
| TAATACCTTGAAACTGCTCT+GGG | + | chr1_2:22140732-22140751 | None:intergenic | 35.0% | |
| TTAATACCTTGAAACTGCTC+TGG | + | chr1_2:22140733-22140752 | None:intergenic | 35.0% | |
| CGAAGAAGATATGGAATATG+TGG | - | chr1_2:22140985-22141004 | Msa0062570:intron | 35.0% | |
| ! | ATGGAATATGTGGGCAATTT+TGG | - | chr1_2:22140995-22141014 | Msa0062570:intron | 35.0% |
| ! | TGTCTTTTTAACAGCTCTCT+TGG | + | chr1_2:22141311-22141330 | None:intergenic | 35.0% |
| AATTCAGTGGAGTTGAAAGT+AGG | - | chr1_2:22141347-22141366 | Msa0062570:intron | 35.0% | |
| ATTCAGTGGAGTTGAAAGTA+GGG | - | chr1_2:22141348-22141367 | Msa0062570:intron | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+CGG | - | chr1_2:22141452-22141471 | Msa0062570:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_2:22141502-22141521 | Msa0062570:CDS | 35.0% | |
| GGAAGAAGCTGAGTTAAGAA+TGG | + | chr1_2:22138496-22138515 | None:intergenic | 40.0% | |
| ATCACTTGTGCTCAATCACT+TGG | - | chr1_2:22138626-22138645 | Msa0062570:intron | 40.0% | |
| GTGCAAGAATAGAGCAAGAA+TGG | + | chr1_2:22138760-22138779 | None:intergenic | 40.0% | |
| TCATGTATTCGTGCTATGCA+TGG | - | chr1_2:22138884-22138903 | Msa0062570:CDS | 40.0% | |
| TTTGGAAGTCTAAGCGATGT+TGG | + | chr1_2:22139156-22139175 | None:intergenic | 40.0% | |
| ACATCGCTTAGACTTCCAAA+TGG | - | chr1_2:22139156-22139175 | Msa0062570:intron | 40.0% | |
| CATCGCTTAGACTTCCAAAT+GGG | - | chr1_2:22139157-22139176 | Msa0062570:intron | 40.0% | |
| ! | ACGATGTTTGGCTTCAGAAT+TGG | - | chr1_2:22139214-22139233 | Msa0062570:CDS | 40.0% |
| ! | TTTGGCTTCAGAATTGGAAG+CGG | - | chr1_2:22139220-22139239 | Msa0062570:CDS | 40.0% |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_2:22139284-22139303 | None:intergenic | 40.0% | |
| !! | TGTGTTGAGGTTCTGAATGA+CGG | - | chr1_2:22139420-22139439 | Msa0062570:CDS | 40.0% |
| TTGTCAATGTTTGTCCCTTG+AGG | + | chr1_2:22139516-22139535 | None:intergenic | 40.0% | |
| GCAACCCTGCAAAAAATTTC+AGG | - | chr1_2:22139555-22139574 | Msa0062570:intron | 40.0% | |
| TTATCCCGATCTCATGTTGA+AGG | - | chr1_2:22139923-22139942 | Msa0062570:intron | 40.0% | |
| TATGGCCTTCAACATGAGAT+CGG | + | chr1_2:22139931-22139950 | None:intergenic | 40.0% | |
| TCATGTTGAAGGCCATAGAT+TGG | - | chr1_2:22139934-22139953 | Msa0062570:intron | 40.0% | |
| TGAAAGTCTCTCACACAGTT+AGG | + | chr1_2:22140003-22140022 | None:intergenic | 40.0% | |
| AAGAGAAACATTTGGGGGTT+TGG | + | chr1_2:22140061-22140080 | None:intergenic | 40.0% | |
| ATGTAGGTATCCTCTGTTTC+AGG | + | chr1_2:22140459-22140478 | None:intergenic | 40.0% | |
| TGAAACAGAGGATACCTACA+TGG | - | chr1_2:22140458-22140477 | Msa0062570:CDS | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_2:22140498-22140517 | Msa0062570:CDS | 40.0% | |
| !! | TTAGAAGTGTTGATGAGGAC+AGG | - | chr1_2:22140527-22140546 | Msa0062570:CDS | 40.0% |
| !! | TAGAAGTGTTGATGAGGACA+GGG | - | chr1_2:22140528-22140547 | Msa0062570:CDS | 40.0% |
| !!! | GGCAGTTTTTTAATGCAGGT+TGG | - | chr1_2:22140586-22140605 | Msa0062570:intron | 40.0% |
| AACAGCTGCCTTAAAACACA+AGG | - | chr1_2:22141031-22141050 | Msa0062570:intron | 40.0% | |
| ! | TCCTGAGACCTTGTGTTTTA+AGG | + | chr1_2:22141042-22141061 | None:intergenic | 40.0% |
| TTCAGTGGAGTTGAAAGTAG+GGG | - | chr1_2:22141349-22141368 | Msa0062570:intron | 40.0% | |
| ATGAACATCTCGACTATGGA+TGG | - | chr1_2:22141402-22141421 | Msa0062570:intron | 40.0% | |
| GACTATGGATGGTTCACTAA+AGG | - | chr1_2:22141413-22141432 | Msa0062570:intron | 40.0% | |
| TCAAGTGTTCACTATGGACG+TGG | - | chr1_2:22138399-22138418 | Msa0062570:CDS | 45.0% | |
| CAAGTGTTCACTATGGACGT+GGG | - | chr1_2:22138400-22138419 | Msa0062570:CDS | 45.0% | |
| TTGAAGCTGGCGAAGTTGAA+TGG | + | chr1_2:22138457-22138476 | None:intergenic | 45.0% | |
| !! | CTAGTTCTTGGTCTTGAAGC+TGG | + | chr1_2:22138470-22138489 | None:intergenic | 45.0% |
| ! | TGGAATTGGGCTTTTCACTC+CGG | - | chr1_2:22138574-22138593 | Msa0062570:CDS | 45.0% |
| AAACAGCCCACTTACAGAGT+TGG | + | chr1_2:22138661-22138680 | None:intergenic | 45.0% | |
| !! | CTCTGTAAGTGGGCTGTTTA+CGG | - | chr1_2:22138662-22138681 | Msa0062570:intron | 45.0% |
| ! | CTTTTTCTTGAGGGGTTGTC+TGG | + | chr1_2:22139454-22139473 | None:intergenic | 45.0% |
| ATGGCCTTCAACATGAGATC+GGG | + | chr1_2:22139930-22139949 | None:intergenic | 45.0% | |
| TACCATTATCCCAGCCACAA+AGG | - | chr1_2:22140699-22140718 | Msa0062570:CDS | 45.0% | |
| TTCCTTTGTGGCTGGGATAA+TGG | + | chr1_2:22140704-22140723 | None:intergenic | 45.0% | |
| !! | TTTGCTTTTGATCCCCGACA+AGG | - | chr1_2:22140911-22140930 | Msa0062570:intron | 45.0% |
| GACAATGCCCGAAGAAGATA+TGG | - | chr1_2:22140976-22140995 | Msa0062570:intron | 45.0% | |
| GCCTTAAAACACAAGGTCTC+AGG | - | chr1_2:22141038-22141057 | Msa0062570:intron | 45.0% | |
| TGAAAGTAGGGGAAGGAACA+TGG | - | chr1_2:22141360-22141379 | Msa0062570:intron | 45.0% | |
| ATGGATGGTTCACTAAAGGC+TGG | - | chr1_2:22141417-22141436 | Msa0062570:intron | 45.0% | |
| CTCAAACAAGCAAGTGTCTC+CGG | + | chr1_2:22141474-22141493 | None:intergenic | 45.0% | |
| !!! | TATTAATTTCATTATTATTT+TGG | - | chr1_2:22140747-22140766 | Msa0062570:CDS | 5.0% |
| GCTGGCGAAGTTGAATGGTT+TGG | + | chr1_2:22138452-22138471 | None:intergenic | 50.0% | |
| CACCAAATGACGAATCGCTC+CGG | + | chr1_2:22138596-22138615 | None:intergenic | 50.0% | |
| TACAACGCGGTGACGATGTT+TGG | - | chr1_2:22139202-22139221 | Msa0062570:CDS | 50.0% | |
| TTTGCACGCTCTCTCAGATG+TGG | - | chr1_2:22139243-22139262 | Msa0062570:CDS | 50.0% | |
| ACTGTTGCTGCTACACCTCA+AGG | - | chr1_2:22139498-22139517 | Msa0062570:intron | 50.0% | |
| CTGTTGCTGCTACACCTCAA+GGG | - | chr1_2:22139499-22139518 | Msa0062570:intron | 50.0% | |
| GCAGAGCCTAATAGAGACAG+AGG | - | chr1_2:22139797-22139816 | Msa0062570:intron | 50.0% | |
| GAGCCTAATAGAGACAGAGG+AGG | - | chr1_2:22139800-22139819 | Msa0062570:intron | 50.0% | |
| GGAATGGTTCCTTTGTGGCT+GGG | + | chr1_2:22140711-22140730 | None:intergenic | 50.0% | |
| ! | CTCTGGGAATGGTTCCTTTG+TGG | + | chr1_2:22140716-22140735 | None:intergenic | 50.0% |
| !! | CCTTGAAACTGCTCTGGGAA+TGG | + | chr1_2:22140727-22140746 | None:intergenic | 50.0% |
| CCATTCCCAGAGCAGTTTCA+AGG | - | chr1_2:22140724-22140743 | Msa0062570:CDS | 50.0% | |
| GTGGAGTTGAAAGTAGGGGA+AGG | - | chr1_2:22141353-22141372 | Msa0062570:intron | 50.0% | |
| TGGACGTGGGAGTGAAGCTA+AGG | - | chr1_2:22138413-22138432 | Msa0062570:CDS | 55.0% | |
| GGACGTGGGAGTGAAGCTAA+GGG | - | chr1_2:22138414-22138433 | Msa0062570:CDS | 55.0% | |
| CTCCGGAGCGATTCGTCATT+TGG | - | chr1_2:22138591-22138610 | Msa0062570:CDS | 55.0% | |
| CGGCCTCCTCTGTCTCTATT+AGG | + | chr1_2:22139806-22139825 | None:intergenic | 55.0% | |
| AATAGAGACAGAGGAGGCCG+CGG | - | chr1_2:22139806-22139825 | Msa0062570:intron | 55.0% | |
| ! | GTGTTGATGAGGACAGGGCA+CGG | - | chr1_2:22140533-22140552 | Msa0062570:CDS | 55.0% |
| GGGAATGGTTCCTTTGTGGC+TGG | + | chr1_2:22140712-22140731 | None:intergenic | 55.0% | |
| TGCATGTCGACGACCTTGTC+GGG | + | chr1_2:22140927-22140946 | None:intergenic | 55.0% | |
| CTGCATGTCGACGACCTTGT+CGG | + | chr1_2:22140928-22140947 | None:intergenic | 55.0% | |
| GCATGTCGACGACCTTGTCG+GGG | + | chr1_2:22140926-22140945 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22138396 | 22141538 | 22138396 | ID=Msa0062570;Name=Msa0062570 |
| chr1_2 | mRNA | 22138396 | 22141538 | 22138396 | ID=Msa0062570-mRNA-1;Parent=Msa0062570;Name=Msa0062570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.12|0.33|9|0|436 |
| chr1_2 | exon | 22141446 | 22141538 | 22141446 | ID=Msa0062570-mRNA-1:exon:8207;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22140639 | 22140829 | 22140639 | ID=Msa0062570-mRNA-1:exon:8206;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22140354 | 22140602 | 22140354 | ID=Msa0062570-mRNA-1:exon:8205;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22139997 | 22140123 | 22139997 | ID=Msa0062570-mRNA-1:exon:8204;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22139376 | 22139468 | 22139376 | ID=Msa0062570-mRNA-1:exon:8203;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22139189 | 22139330 | 22139189 | ID=Msa0062570-mRNA-1:exon:8202;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22138873 | 22138986 | 22138873 | ID=Msa0062570-mRNA-1:exon:8201;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22138723 | 22138781 | 22138723 | ID=Msa0062570-mRNA-1:exon:8200;Parent=Msa0062570-mRNA-1 |
| chr1_2 | exon | 22138396 | 22138638 | 22138396 | ID=Msa0062570-mRNA-1:exon:8199;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22141446 | 22141538 | 22141446 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22140639 | 22140829 | 22140639 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22140354 | 22140602 | 22140354 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22139997 | 22140123 | 22139997 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22139376 | 22139468 | 22139376 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22139189 | 22139330 | 22139189 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22138873 | 22138986 | 22138873 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22138723 | 22138781 | 22138723 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| chr1_2 | CDS | 22138396 | 22138638 | 22138396 | ID=Msa0062570-mRNA-1:cds;Parent=Msa0062570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
