Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062620 | XP_039690067.1 | 73.552 | 397 | 81 | 5 | 1 | 373 | 1 | 397 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062620 | A0A072VFJ7 | 73.552 | 397 | 81 | 5 | 1 | 373 | 1 | 397 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062620 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062620 | MtrunA17_Chr1g0163201 | 72.751 | 378 | 79 | 5 | 20 | 373 | 18 | 395 | 0.0 | 526 |
| Msa0062620 | MtrunA17_Chr1g0163181 | 63.594 | 434 | 95 | 7 | 1 | 373 | 1 | 432 | 0.0 | 516 |
| Msa0062620 | MtrunA17_Chr1g0163151 | 70.536 | 224 | 53 | 3 | 159 | 371 | 1 | 222 | 2.89e-107 | 314 |
| Msa0062620 | MtrunA17_Chr1g0163111 | 66.245 | 237 | 54 | 5 | 159 | 374 | 1 | 232 | 1.17e-100 | 297 |
| Msa0062620 | MtrunA17_Chr1g0163251 | 47.590 | 332 | 118 | 9 | 1 | 302 | 1 | 306 | 2.38e-87 | 269 |
| Msa0062620 | MtrunA17_Chr1g0163231 | 40.753 | 292 | 137 | 8 | 1 | 268 | 1 | 280 | 3.37e-63 | 204 |
| Msa0062620 | MtrunA17_Chr1g0163261 | 39.474 | 304 | 146 | 6 | 1 | 277 | 1 | 293 | 2.16e-59 | 194 |
| Msa0062620 | MtrunA17_Chr1g0171611 | 41.096 | 292 | 124 | 8 | 1 | 268 | 1 | 268 | 8.84e-58 | 189 |
| Msa0062620 | MtrunA17_Chr1g0163191 | 67.500 | 160 | 44 | 3 | 1 | 153 | 1 | 159 | 2.42e-55 | 179 |
| Msa0062620 | MtrunA17_Chr1g0163241 | 51.899 | 158 | 52 | 5 | 1 | 150 | 7 | 148 | 2.57e-41 | 143 |
| Msa0062620 | MtrunA17_Chr6g0476171 | 40.566 | 212 | 110 | 5 | 175 | 370 | 34 | 245 | 6.48e-40 | 142 |
| Msa0062620 | MtrunA17_Chr1g0162151 | 38.009 | 221 | 112 | 6 | 159 | 369 | 1 | 206 | 8.53e-35 | 127 |
| Msa0062620 | MtrunA17_Chr1g0163091 | 39.860 | 143 | 75 | 3 | 159 | 291 | 1 | 142 | 9.55e-26 | 101 |
| Msa0062620 | MtrunA17_Chr3g0131891 | 30.282 | 284 | 160 | 9 | 14 | 267 | 28 | 303 | 4.17e-25 | 104 |
| Msa0062620 | MtrunA17_Chr7g0233561 | 27.869 | 305 | 166 | 10 | 8 | 267 | 17 | 312 | 6.55e-24 | 100 |
| Msa0062620 | MtrunA17_Chr1g0208771 | 30.175 | 285 | 164 | 9 | 20 | 271 | 12 | 294 | 1.98e-23 | 101 |
| Msa0062620 | MtrunA17_Chr7g0233521 | 30.000 | 270 | 158 | 8 | 21 | 267 | 2 | 263 | 2.59e-23 | 98.2 |
| Msa0062620 | MtrunA17_Chr1g0163221 | 27.540 | 374 | 216 | 16 | 14 | 369 | 20 | 356 | 6.38e-23 | 98.6 |
| Msa0062620 | MtrunA17_Chr7g0233541 | 27.875 | 287 | 159 | 9 | 21 | 267 | 2 | 280 | 1.33e-22 | 96.7 |
| Msa0062620 | MtrunA17_Chr7g0233531 | 30.182 | 275 | 151 | 8 | 21 | 267 | 2 | 263 | 9.30e-22 | 94.0 |
| Msa0062620 | MtrunA17_Chr8g0390841 | 27.036 | 307 | 180 | 10 | 14 | 283 | 48 | 347 | 8.70e-21 | 94.0 |
| Msa0062620 | MtrunA17_Chr1g0163131 | 28.571 | 287 | 164 | 11 | 14 | 266 | 27 | 306 | 1.49e-19 | 88.2 |
| Msa0062620 | MtrunA17_Chr1g0163131 | 52.239 | 67 | 30 | 1 | 306 | 372 | 244 | 308 | 8.01e-15 | 74.3 |
| Msa0062620 | MtrunA17_Chr1g0163101 | 38.000 | 150 | 67 | 6 | 14 | 152 | 26 | 160 | 7.86e-19 | 83.6 |
| Msa0062620 | MtrunA17_Chr3g0103171 | 25.090 | 279 | 157 | 8 | 20 | 265 | 5 | 264 | 1.51e-18 | 84.7 |
| Msa0062620 | MtrunA17_Chr1g0163071 | 24.315 | 292 | 170 | 6 | 21 | 267 | 2 | 287 | 2.29e-18 | 84.7 |
| Msa0062620 | MtrunA17_Chr3g0103181 | 24.150 | 294 | 159 | 12 | 9 | 265 | 12 | 278 | 2.38e-16 | 78.6 |
| Msa0062620 | MtrunA17_Chr4g0067431 | 26.132 | 287 | 166 | 10 | 9 | 253 | 15 | 297 | 8.30e-16 | 77.4 |
| Msa0062620 | MtrunA17_Chr3g0103191 | 24.299 | 214 | 127 | 7 | 9 | 200 | 12 | 212 | 7.95e-15 | 73.6 |
| Msa0062620 | MtrunA17_Chr7g0233571 | 27.358 | 212 | 125 | 7 | 7 | 191 | 8 | 217 | 9.84e-14 | 70.1 |
| Msa0062620 | MtrunA17_Chr1g0162161 | 34.459 | 148 | 78 | 6 | 21 | 158 | 4 | 142 | 1.60e-13 | 67.8 |
| Msa0062620 | MtrunA17_Chr1g0163081 | 37.736 | 106 | 57 | 4 | 21 | 119 | 6 | 109 | 5.23e-13 | 66.2 |
| Msa0062620 | MtrunA17_Chr1g0163121 | 39.815 | 108 | 56 | 4 | 19 | 119 | 9 | 114 | 7.06e-13 | 65.5 |
| Msa0062620 | MtrunA17_Chr3g0103151 | 30.263 | 152 | 76 | 6 | 9 | 149 | 12 | 144 | 1.48e-12 | 65.1 |
| Msa0062620 | MtrunA17_Chr6g0476181 | 37.391 | 115 | 60 | 4 | 21 | 128 | 2 | 111 | 2.02e-12 | 64.7 |
| Msa0062620 | MtrunA17_Chr5g0419201 | 28.395 | 162 | 99 | 4 | 14 | 164 | 25 | 180 | 1.86e-11 | 62.8 |
| Msa0062620 | MtrunA17_Chr1g0163141 | 33.846 | 130 | 76 | 4 | 17 | 139 | 7 | 133 | 2.92e-11 | 62.0 |
| Msa0062620 | MtrunA17_Chr6g0467351 | 27.374 | 179 | 88 | 4 | 13 | 181 | 23 | 169 | 3.97e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_2:-22175541 | None:intergenic |
| GTGTTTGATGTTTCAATTAT+AGG | 0.194875 | 1_2:+22182094 | Msa0062620:CDS |
| TTTGCAAAGTCTTTCAAATA+TGG | 0.208675 | 1_2:+22175626 | Msa0062620:intron |
| CCAGCTCAAAGGACAATAAA+AGG | 0.231912 | 1_2:+22175866 | Msa0062620:CDS |
| TTCATCAACGCATTTGATAT+TGG | 0.272796 | 1_2:-22175732 | None:intergenic |
| AGCAATATGCGGAGAAATAT+TGG | 0.276900 | 1_2:+22175495 | Msa0062620:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_2:+22181081 | Msa0062620:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_2:+22175582 | Msa0062620:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_2:+22181753 | Msa0062620:CDS |
| TTACGTCAATGGCTATTTCT+TGG | 0.299414 | 1_2:+22176289 | Msa0062620:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_2:-22175533 | None:intergenic |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_2:+22175653 | Msa0062620:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_2:-22175532 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_2:+22181082 | Msa0062620:CDS |
| ATAGTGATAATGAATGAAAA+AGG | 0.379571 | 1_2:-22181256 | None:intergenic |
| TAACAAAGAAAGATCTTGTA+TGG | 0.389809 | 1_2:+22181153 | Msa0062620:intron |
| ATAATTTATTTCTAAAGTAT+TGG | 0.398912 | 1_2:-22175708 | None:intergenic |
| ACAGCTTCAGATTGTGCCAT+TGG | 0.421914 | 1_2:-22176227 | None:intergenic |
| AGTATTCGTGGCTGCAGGTT+CGG | 0.440752 | 1_2:+22181986 | Msa0062620:CDS |
| TATTTCTCCGCATATTGCTT+AGG | 0.444426 | 1_2:-22175491 | None:intergenic |
| GAGGTGGTTGGAAAATATTT+AGG | 0.450588 | 1_2:+22181176 | Msa0062620:CDS |
| AAAGCATGCAGAGTGGAGAT+TGG | 0.451382 | 1_2:+22182031 | Msa0062620:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.455053 | 1_2:+22181747 | Msa0062620:CDS |
| CAGCTTCAGATTGTGCCATT+GGG | 0.460205 | 1_2:-22176226 | None:intergenic |
| CAAAGTGAGCATGGTGAAGA+AGG | 0.463267 | 1_2:+22176193 | Msa0062620:CDS |
| GTGTTATGCTTCATCACATC+AGG | 0.468230 | 1_2:-22181739 | None:intergenic |
| ATTATCACTATTACTCGTGC+TGG | 0.468433 | 1_2:+22181268 | Msa0062620:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_2:-22176261 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_2:+22175656 | Msa0062620:CDS |
| GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1_2:+22181117 | Msa0062620:CDS |
| ATGAGAGTATTCGTGGCTGC+AGG | 0.493889 | 1_2:+22181981 | Msa0062620:CDS |
| GCTGCAGGTTCGGTAAAGAT+TGG | 0.496239 | 1_2:+22181996 | Msa0062620:CDS |
| GCAATCGCAAAGAAACTACT+AGG | 0.505781 | 1_2:+22181298 | Msa0062620:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_2:-22176260 | None:intergenic |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1_2:+22181974 | Msa0062620:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_2:-22175765 | None:intergenic |
| CAGCTCAAAGGACAATAAAA+GGG | 0.535856 | 1_2:+22175867 | Msa0062620:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_2:+22175536 | Msa0062620:CDS |
| ATGACACAATCTTACGTCAA+TGG | 0.537902 | 1_2:+22176278 | Msa0062620:CDS |
| GATCTTGTATGGGAGGTGGT+TGG | 0.547438 | 1_2:+22181164 | Msa0062620:intron |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_2:+22181096 | Msa0062620:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_2:+22181230 | Msa0062620:CDS |
| AAAGGGAAGAGAAAATTCTC+AGG | 0.557828 | 1_2:+22175884 | Msa0062620:CDS |
| TGGATGTCATGAAAATATTG+TGG | 0.562219 | 1_2:+22181913 | Msa0062620:CDS |
| GAAAGATCTTGTATGGGAGG+TGG | 0.571003 | 1_2:+22181160 | Msa0062620:intron |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_2:+22181771 | Msa0062620:CDS |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_2:+22181086 | Msa0062620:CDS |
| AACAAAGAAAGATCTTGTAT+GGG | 0.582045 | 1_2:+22181154 | Msa0062620:intron |
| TGTGCTGAAGCCACTGAAGA+AGG | 0.588840 | 1_2:+22175755 | Msa0062620:CDS |
| AAAGAAAGATCTTGTATGGG+AGG | 0.599987 | 1_2:+22181157 | Msa0062620:intron |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_2:+22181103 | Msa0062620:CDS |
| AGGTAGTAACAAAGTGAGCA+TGG | 0.605994 | 1_2:+22176184 | Msa0062620:intron |
| AAATGTCAAAGCCAGCTCAA+AGG | 0.606350 | 1_2:+22175855 | Msa0062620:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1_2:+22175829 | Msa0062620:CDS |
| TATGCGGAGAAATATTGGAA+AGG | 0.636874 | 1_2:+22175500 | Msa0062620:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1_2:+22176211 | Msa0062620:CDS |
| ATTTATGAAAGCATGCAGAG+TGG | 0.691626 | 1_2:+22182024 | Msa0062620:CDS |
| GAGGGTTCCTAAGCAATATG+CGG | 0.691772 | 1_2:+22175484 | Msa0062620:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTATTTTTT+TGG | - | chr1_2:22178661-22178680 | None:intergenic | 0.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1_2:22175711-22175730 | None:intergenic | 10.0% |
| !! | TATTATATATAAATATCCAA+AGG | - | chr1_2:22177432-22177451 | None:intergenic | 10.0% |
| !! | TTGGATATTTATATATAATA+TGG | + | chr1_2:22177432-22177451 | Msa0062620:intron | 10.0% |
| !! | CTATACATTAAATAAAAAAA+GGG | - | chr1_2:22178454-22178473 | None:intergenic | 10.0% |
| !! | ACTATACATTAAATAAAAAA+AGG | - | chr1_2:22178455-22178474 | None:intergenic | 10.0% |
| !!! | TTTAATAACATTTGATTTAT+TGG | + | chr1_2:22178761-22178780 | Msa0062620:intron | 10.0% |
| !!! | TTAATAACATTTGATTTATT+GGG | + | chr1_2:22178762-22178781 | Msa0062620:intron | 10.0% |
| !! | TAGATATCATAAAAAAAAAT+AGG | + | chr1_2:22180736-22180755 | Msa0062620:intron | 10.0% |
| !!! | TATAATAATCTATTTTGTTT+AGG | - | chr1_2:22180820-22180839 | None:intergenic | 10.0% |
| !! | ATTATATCTTTAAACTTTAT+AGG | + | chr1_2:22180834-22180853 | Msa0062620:intron | 10.0% |
| !!! | TATAGATTTTATTATTGTAA+AGG | + | chr1_2:22181411-22181430 | Msa0062620:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | + | chr1_2:22181505-22181524 | Msa0062620:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | - | chr1_2:22181599-22181618 | None:intergenic | 10.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_2:22175559-22175578 | Msa0062620:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_2:22175597-22175616 | Msa0062620:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_2:22175598-22175617 | Msa0062620:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_2:22175683-22175702 | Msa0062620:intron | 15.0% |
| !!! | ATAAAAATATGTGACTTTTT+TGG | + | chr1_2:22176077-22176096 | Msa0062620:intron | 15.0% |
| !!! | GAAAAATATAATTTTCAAGT+TGG | + | chr1_2:22176538-22176557 | Msa0062620:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | + | chr1_2:22176861-22176880 | Msa0062620:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | + | chr1_2:22176862-22176881 | Msa0062620:intron | 15.0% |
| !! | TATCTTAATATTTGTAACTT+AGG | - | chr1_2:22178303-22178322 | None:intergenic | 15.0% |
| !!! | TTATTCAAAGTTTTTCATAT+AGG | + | chr1_2:22178511-22178530 | Msa0062620:intron | 15.0% |
| !!! | TTTTTTTTATTTTTTTGGTC+AGG | - | chr1_2:22178656-22178675 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | + | chr1_2:22181532-22181551 | Msa0062620:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | + | chr1_2:22176861-22176880 | Msa0062620:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | + | chr1_2:22176862-22176881 | Msa0062620:intron | 15.0% |
| !! | GAAATCATACATTAACAATA+GGG | - | chr1_2:22175447-22175466 | None:intergenic | 20.0% |
| !! | AGAAATCATACATTAACAAT+AGG | - | chr1_2:22175448-22175467 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | - | chr1_2:22175535-22175554 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | - | chr1_2:22175536-22175555 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | + | chr1_2:22175536-22175555 | Msa0062620:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_2:22175558-22175577 | Msa0062620:CDS | 20.0% |
| !! | AAATAATCTCTAAACTTTAC+AGG | + | chr1_2:22176164-22176183 | Msa0062620:intron | 20.0% |
| !! | GATCACTTGAAAAAATTTAA+TGG | + | chr1_2:22176409-22176428 | Msa0062620:intron | 20.0% |
| !! | TTATAAAGAAAGATCTTGTT+TGG | + | chr1_2:22176492-22176511 | Msa0062620:intron | 20.0% |
| !!! | TATAAAGAAAGATCTTGTTT+GGG | + | chr1_2:22176493-22176512 | Msa0062620:intron | 20.0% |
| !! | TATGAAAAAGGTTATAAGAA+AGG | + | chr1_2:22176713-22176732 | Msa0062620:intron | 20.0% |
| !! | ATGAAAAAGGTTATAAGAAA+GGG | + | chr1_2:22176714-22176733 | Msa0062620:intron | 20.0% |
| !! | TAAACATACAATATACAGTT+AGG | - | chr1_2:22176805-22176824 | None:intergenic | 20.0% |
| !! | ATTCTATTATTGCTAACATT+TGG | + | chr1_2:22177374-22177393 | Msa0062620:intron | 20.0% |
| !!! | ACCTAATGACTTAAATTTTT+TGG | + | chr1_2:22177920-22177939 | Msa0062620:intron | 20.0% |
| !! | ACCAAAAAATTTAAGTCATT+AGG | - | chr1_2:22177924-22177943 | None:intergenic | 20.0% |
| !! | TTTAATATCACCATTAGATT+AGG | - | chr1_2:22178017-22178036 | None:intergenic | 20.0% |
| !! | GTCATATTAAAAATATCCAA+AGG | - | chr1_2:22178182-22178201 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTTTGCAACACT+TGG | + | chr1_2:22178804-22178823 | Msa0062620:intron | 20.0% |
| !!! | TATTTTCAATTATTTTTGGG+AGG | + | chr1_2:22178869-22178888 | Msa0062620:intron | 20.0% |
| !! | ATTTAAAGGTTGAGATATTA+GGG | - | chr1_2:22179118-22179137 | None:intergenic | 20.0% |
| !! | TATTTAAAGGTTGAGATATT+AGG | - | chr1_2:22179119-22179138 | None:intergenic | 20.0% |
| !!! | TTTTATCGAGATTATTACAA+AGG | - | chr1_2:22179149-22179168 | None:intergenic | 20.0% |
| !!! | TTTACTTTTTGTATTCTTGT+TGG | - | chr1_2:22179275-22179294 | None:intergenic | 20.0% |
| !! | TCAATAATATGGAATCAATT+GGG | - | chr1_2:22179410-22179429 | None:intergenic | 20.0% |
| !! | TTCAATAATATGGAATCAAT+TGG | - | chr1_2:22179411-22179430 | None:intergenic | 20.0% |
| !! | ATATTATCCTATGAAAATCT+GGG | - | chr1_2:22179753-22179772 | None:intergenic | 20.0% |
| !!! | ACTTCTTCCTTTTTTATTTA+TGG | + | chr1_2:22180083-22180102 | Msa0062620:intron | 20.0% |
| !! | AGAGAAACCATAAATAAAAA+AGG | - | chr1_2:22180093-22180112 | None:intergenic | 20.0% |
| !! | GTAACATAAAAAAAGAGATA+TGG | - | chr1_2:22180167-22180186 | None:intergenic | 20.0% |
| !!! | AAATATACATCGAATGTTTT+TGG | - | chr1_2:22180570-22180589 | None:intergenic | 20.0% |
| !!! | GGACTATAAATTTTTTAAAG+TGG | + | chr1_2:22180600-22180619 | Msa0062620:intron | 20.0% |
| !!! | TTTTAAAGTGGTTACTTTAT+TGG | + | chr1_2:22180612-22180631 | Msa0062620:intron | 20.0% |
| !! | TTCATTATAACTTCAAAAGA+GGG | - | chr1_2:22180932-22180951 | None:intergenic | 20.0% |
| !! | TTTCATTATAACTTCAAAAG+AGG | - | chr1_2:22180933-22180952 | None:intergenic | 20.0% |
| !!! | CTTTTGAAGTTATAATGAAA+TGG | + | chr1_2:22180933-22180952 | Msa0062620:intron | 20.0% |
| !!! | GAAAACTTGAAAGATTTTAA+TGG | + | chr1_2:22181065-22181084 | Msa0062620:CDS | 20.0% |
| !!! | ATAGTGATAATGAATGAAAA+AGG | - | chr1_2:22181259-22181278 | None:intergenic | 20.0% |
| !!! | TTTTATACAATTAATCCTAC+CGG | - | chr1_2:22181793-22181812 | None:intergenic | 20.0% |
| !! | AAATATTGTGGAGTTAAAAA+TGG | + | chr1_2:22181925-22181944 | Msa0062620:CDS | 20.0% |
| !! | AATATTGTGGAGTTAAAAAT+GGG | + | chr1_2:22181926-22181945 | Msa0062620:CDS | 20.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_2:22175562-22175581 | Msa0062620:CDS | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | + | chr1_2:22175626-22175645 | Msa0062620:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_2:22175653-22175672 | Msa0062620:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_2:22175656-22175675 | Msa0062620:CDS | 25.0% |
| !!! | TAATTGCTTTTAAGAGTCAA+TGG | + | chr1_2:22175952-22175971 | Msa0062620:intron | 25.0% |
| !!! | AAATATGTGACTTTTTTGGA+AGG | + | chr1_2:22176081-22176100 | Msa0062620:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | - | chr1_2:22176263-22176282 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | - | chr1_2:22176264-22176283 | None:intergenic | 25.0% |
| ! | ATAGTGACAATGAATGAAAA+AGG | - | chr1_2:22176598-22176617 | None:intergenic | 25.0% |
| ! | TAAAACCTAGTAGTTTCTTT+GGG | - | chr1_2:22176646-22176665 | None:intergenic | 25.0% |
| ! | TTAAAACCTAGTAGTTTCTT+TGG | - | chr1_2:22176647-22176666 | None:intergenic | 25.0% |
| ! | TGAAAAAGGTTATAAGAAAG+GGG | + | chr1_2:22176715-22176734 | Msa0062620:intron | 25.0% |
| ! | TAAAAAAAGAAACTGAATCC+TGG | - | chr1_2:22176774-22176793 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTAAAAC+CGG | + | chr1_2:22177130-22177149 | Msa0062620:intron | 25.0% |
| !! | TCTTTAGGTTAATTGATGAA+AGG | + | chr1_2:22177270-22177289 | Msa0062620:intron | 25.0% |
| ! | AGAATGACATGATTAAGAAA+TGG | + | chr1_2:22177519-22177538 | Msa0062620:intron | 25.0% |
| !!! | TTTTTAATTTGCCACAAAAG+TGG | - | chr1_2:22177625-22177644 | None:intergenic | 25.0% |
| ! | ATTGCATAATGTTCTTAGAA+CGG | + | chr1_2:22177727-22177746 | Msa0062620:intron | 25.0% |
| !! | TTCTTATGATTTTTGTGTGT+AGG | + | chr1_2:22177822-22177841 | Msa0062620:intron | 25.0% |
| !! | TCTTATGATTTTTGTGTGTA+GGG | + | chr1_2:22177823-22177842 | Msa0062620:intron | 25.0% |
| !! | CACATTGTTTAAAAAAGTGT+TGG | + | chr1_2:22177866-22177885 | Msa0062620:intron | 25.0% |
| ! | TAATGGTGATATTAAAGTTG+AGG | + | chr1_2:22178021-22178040 | Msa0062620:intron | 25.0% |
| ! | AAAAAAGAAGAAGAAAGAAG+TGG | - | chr1_2:22178243-22178262 | None:intergenic | 25.0% |
| !!! | AAGATATTTTGACCTCTAAT+AGG | + | chr1_2:22178317-22178336 | Msa0062620:intron | 25.0% |
| ! | CAAAAAAAGTTTCCTATTAG+AGG | - | chr1_2:22178332-22178351 | None:intergenic | 25.0% |
| ! | ACATGTATTATTATATGCAG+TGG | + | chr1_2:22178563-22178582 | Msa0062620:intron | 25.0% |
| !!! | TTTTTCAAGATGAATAAGTG+GGG | - | chr1_2:22178610-22178629 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGATGAATAAGT+GGG | - | chr1_2:22178611-22178630 | None:intergenic | 25.0% |
| !!! | TTTATAGTGATTTGTTCATG+TGG | + | chr1_2:22178680-22178699 | Msa0062620:intron | 25.0% |
| ! | AGTCAATACAAAATAACACT+AGG | - | chr1_2:22178996-22179015 | None:intergenic | 25.0% |
| ! | TGTATTCTTGTTGGATAATT+TGG | - | chr1_2:22179266-22179285 | None:intergenic | 25.0% |
| ! | AAAGGTAAAACTTGAGATAT+GGG | - | chr1_2:22179342-22179361 | None:intergenic | 25.0% |
| !!! | CTTTATTATTTTTCGCTGAA+AGG | - | chr1_2:22179360-22179379 | None:intergenic | 25.0% |
| ! | GATTCCATATTATTGAAACT+TGG | + | chr1_2:22179414-22179433 | Msa0062620:intron | 25.0% |
| ! | ATAGCCAAGTTTCAATAATA+TGG | - | chr1_2:22179421-22179440 | None:intergenic | 25.0% |
| ! | ACTAATCATTTATTTCCCAA+TGG | + | chr1_2:22179475-22179494 | Msa0062620:intron | 25.0% |
| ! | AAAATGTTTCAACGAATATG+TGG | - | chr1_2:22179557-22179576 | None:intergenic | 25.0% |
| !! | ACATATTCGTTGAAACATTT+TGG | + | chr1_2:22179556-22179575 | Msa0062620:intron | 25.0% |
| !! | CATATTCGTTGAAACATTTT+GGG | + | chr1_2:22179557-22179576 | Msa0062620:intron | 25.0% |
| !! | ATATTCGTTGAAACATTTTG+GGG | + | chr1_2:22179558-22179577 | Msa0062620:intron | 25.0% |
| ! | ATGATGATTCACAATGAAAT+TGG | - | chr1_2:22179713-22179732 | None:intergenic | 25.0% |
| !! | TATATTTCCCAGATTTTCAT+AGG | + | chr1_2:22179743-22179762 | Msa0062620:intron | 25.0% |
| ! | GATATTATCCTATGAAAATC+TGG | - | chr1_2:22179754-22179773 | None:intergenic | 25.0% |
| !!! | AGTACTAATTTTGAAACAGA+TGG | + | chr1_2:22179783-22179802 | Msa0062620:intron | 25.0% |
| !! | AGATGGAGTAATAATTTTCA+TGG | + | chr1_2:22179800-22179819 | Msa0062620:intron | 25.0% |
| ! | AGACTATATTCATCATCATT+CGG | - | chr1_2:22179900-22179919 | None:intergenic | 25.0% |
| ! | TTGAAGCAAATTGTTTATGT+TGG | + | chr1_2:22180198-22180217 | Msa0062620:intron | 25.0% |
| !!! | AATGTTTTGAATGAGTTTGA+AGG | + | chr1_2:22180347-22180366 | Msa0062620:intron | 25.0% |
| ! | AAAGCATGTTCTATTAGTAA+TGG | - | chr1_2:22180388-22180407 | None:intergenic | 25.0% |
| ! | TATACTCCATGTTTCATAAA+TGG | - | chr1_2:22180464-22180483 | None:intergenic | 25.0% |
| ! | TTTATGAAACATGGAGTATA+TGG | + | chr1_2:22180464-22180483 | Msa0062620:intron | 25.0% |
| ! | TATGTAATATGTGTGACATA+TGG | - | chr1_2:22180497-22180516 | None:intergenic | 25.0% |
| !!! | TGGTCATTGTTAATTTGTTA+TGG | - | chr1_2:22180550-22180569 | None:intergenic | 25.0% |
| !!! | ATAATGAAATGGCTATTTCT+TGG | + | chr1_2:22180944-22180963 | Msa0062620:intron | 25.0% |
| !! | GAGTTTGAGGTATTATATTA+TGG | + | chr1_2:22181130-22181149 | Msa0062620:intron | 25.0% |
| ! | TAACAAAGAAAGATCTTGTA+TGG | + | chr1_2:22181153-22181172 | Msa0062620:intron | 25.0% |
| ! | AACAAAGAAAGATCTTGTAT+GGG | + | chr1_2:22181154-22181173 | Msa0062620:intron | 25.0% |
| ! | TTTATACAATTAATCCTACC+GGG | - | chr1_2:22181792-22181811 | None:intergenic | 25.0% |
| ! | ATATTGTGGAGTTAAAAATG+GGG | + | chr1_2:22181927-22181946 | Msa0062620:CDS | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | + | chr1_2:22181974-22181993 | Msa0062620:CDS | 25.0% |
| ! | GTGTTTGATGTTTCAATTAT+AGG | + | chr1_2:22182094-22182113 | Msa0062620:CDS | 25.0% |
| ACATTAACAATAGGGTTTAC+AGG | - | chr1_2:22175439-22175458 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | - | chr1_2:22175554-22175573 | None:intergenic | 30.0% |
| TTCATCAACGCATTTGATAT+TGG | - | chr1_2:22175735-22175754 | None:intergenic | 30.0% | |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | - | chr1_2:22175813-22175832 | None:intergenic | 30.0% |
| TCTGAAAGCTTGTAAATCTA+AGG | + | chr1_2:22175999-22176018 | Msa0062620:intron | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | + | chr1_2:22176365-22176384 | Msa0062620:intron | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_2:22176425-22176444 | Msa0062620:intron | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_2:22176426-22176445 | Msa0062620:intron | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_2:22176569-22176588 | Msa0062620:intron | 30.0% |
| GATGAAACATAACACATTCA+AGG | + | chr1_2:22176952-22176971 | Msa0062620:intron | 30.0% | |
| ! | ACATAACACATTCAAGGTTT+TGG | + | chr1_2:22176958-22176977 | Msa0062620:intron | 30.0% |
| TTATGTAATTAATCCTACCG+AGG | - | chr1_2:22176996-22177015 | None:intergenic | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | + | chr1_2:22177118-22177137 | Msa0062620:intron | 30.0% | |
| AATATTGTGGAGTTAAAACC+GGG | + | chr1_2:22177131-22177150 | Msa0062620:intron | 30.0% | |
| !! | AACTATTATGAGAGTATTCG+TGG | + | chr1_2:22177179-22177198 | Msa0062620:intron | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | + | chr1_2:22177229-22177248 | Msa0062620:intron | 30.0% | |
| !!! | GGTTGCTTGTAATGTTTTTT+TGG | + | chr1_2:22177453-22177472 | Msa0062620:intron | 30.0% |
| CTGAGAATGTTCTGTTAAAT+AGG | + | chr1_2:22177588-22177607 | Msa0062620:intron | 30.0% | |
| AATATCACCATTAGATTAGG+AGG | - | chr1_2:22178014-22178033 | None:intergenic | 30.0% | |
| TTAAAGTTGAGGTTTGATGA+AGG | + | chr1_2:22178032-22178051 | Msa0062620:intron | 30.0% | |
| TAAAGTTGAGGTTTGATGAA+GGG | + | chr1_2:22178033-22178052 | Msa0062620:intron | 30.0% | |
| TAAAGAAAGTCTTCATGACA+AGG | + | chr1_2:22178073-22178092 | Msa0062620:intron | 30.0% | |
| ! | TGGAAAGAATGAAGAGTTTT+GGG | - | chr1_2:22178223-22178242 | None:intergenic | 30.0% |
| !! | TTGTAACTTAGGCTTTGTTT+CGG | - | chr1_2:22178292-22178311 | None:intergenic | 30.0% |
| AAAAAAAGGGAAATGCTAAC+CGG | - | chr1_2:22178441-22178460 | None:intergenic | 30.0% | |
| !!! | CCTTTTTCAAGATGAATAAG+TGG | - | chr1_2:22178612-22178631 | None:intergenic | 30.0% |
| CCACTTATTCATCTTGAAAA+AGG | + | chr1_2:22178609-22178628 | Msa0062620:intron | 30.0% | |
| AAAGGTGAATTCTAAGCAAT+AGG | + | chr1_2:22178627-22178646 | Msa0062620:intron | 30.0% | |
| AAATTTCACGTTCGAATTCA+CGG | - | chr1_2:22178788-22178807 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGCAACACTTGGT+TGG | + | chr1_2:22178808-22178827 | Msa0062620:intron | 30.0% |
| TTATGGAAATTCCAAAGGAA+CGG | - | chr1_2:22178920-22178939 | None:intergenic | 30.0% | |
| ATCAAGATTGCTATAGAATC+TGG | + | chr1_2:22178943-22178962 | Msa0062620:intron | 30.0% | |
| TGAATCCATAATCGATATTC+TGG | + | chr1_2:22179018-22179037 | Msa0062620:intron | 30.0% | |
| CAAAGGAGGATCATATTTAA+AGG | - | chr1_2:22179132-22179151 | None:intergenic | 30.0% | |
| TATCGAGATTATTACAAAGG+AGG | - | chr1_2:22179146-22179165 | None:intergenic | 30.0% | |
| CATTGAAGATATGGTTGAAT+TGG | - | chr1_2:22179231-22179250 | None:intergenic | 30.0% | |
| ACCATATCTTCAATGAAAGA+AGG | + | chr1_2:22179236-22179255 | Msa0062620:intron | 30.0% | |
| AAAAGTAAAACGTGTGACTT+TGG | + | chr1_2:22179286-22179305 | Msa0062620:intron | 30.0% | |
| GAAAGGTAAAACTTGAGATA+TGG | - | chr1_2:22179343-22179362 | None:intergenic | 30.0% | |
| ! | TTTTCATAGGATAATATCCC+AGG | + | chr1_2:22179756-22179775 | Msa0062620:intron | 30.0% |
| GACTATATTCATCATCATTC+GGG | - | chr1_2:22179899-22179918 | None:intergenic | 30.0% | |
| !!! | AGTCTCTTTTTTTCTTCTTC+AGG | + | chr1_2:22179915-22179934 | Msa0062620:intron | 30.0% |
| TGAGAGATAGGAACATAAAA+GGG | - | chr1_2:22180038-22180057 | None:intergenic | 30.0% | |
| CATTCTCTTGAAAAGTAACT+TGG | - | chr1_2:22180331-22180350 | None:intergenic | 30.0% | |
| ACTAGACCATTTATGAAACA+TGG | + | chr1_2:22180455-22180474 | Msa0062620:intron | 30.0% | |
| ! | GATGTATATTTGTTGAGAAC+AGG | + | chr1_2:22180579-22180598 | Msa0062620:intron | 30.0% |
| TGTACTTCGTTGTAAATCTA+AGG | + | chr1_2:22180637-22180656 | Msa0062620:intron | 30.0% | |
| CTTTATAGGTAGTAACAAAG+TGG | + | chr1_2:22180848-22180867 | Msa0062620:intron | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | + | chr1_2:22176365-22176384 | Msa0062620:intron | 30.0% |
| ! | TTTTCTCTTGAAAACTCACT+TGG | - | chr1_2:22181050-22181069 | None:intergenic | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_2:22176425-22176444 | Msa0062620:intron | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_2:22176426-22176445 | Msa0062620:intron | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_2:22176569-22176588 | Msa0062620:intron | 30.0% |
| AACTGAATCCTAGATAAGTT+AGG | - | chr1_2:22181558-22181577 | None:intergenic | 30.0% | |
| TTATACAATTAATCCTACCG+GGG | - | chr1_2:22181791-22181810 | None:intergenic | 30.0% | |
| !! | CCATTTTTCATAAACTCCTT+TGG | - | chr1_2:22181896-22181915 | None:intergenic | 30.0% |
| CCAAAGGAGTTTATGAAAAA+TGG | + | chr1_2:22181893-22181912 | Msa0062620:intron | 30.0% | |
| TGGATGTCATGAAAATATTG+TGG | + | chr1_2:22181913-22181932 | Msa0062620:CDS | 30.0% | |
| TCTGAATTTCTTTGTTGCAG+AGG | + | chr1_2:22175465-22175484 | Msa0062620:intron | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | + | chr1_2:22175466-22175485 | Msa0062620:intron | 35.0% | |
| TATTTCTCCGCATATTGCTT+AGG | - | chr1_2:22175494-22175513 | None:intergenic | 35.0% | |
| AGCAATATGCGGAGAAATAT+TGG | + | chr1_2:22175495-22175514 | Msa0062620:CDS | 35.0% | |
| TATGCGGAGAAATATTGGAA+AGG | + | chr1_2:22175500-22175519 | Msa0062620:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | - | chr1_2:22175544-22175563 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_2:22175572-22175591 | Msa0062620:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_2:22175582-22175601 | Msa0062620:CDS | 35.0% | |
| !! | CATTGGTGGATCGTATTTTA+AGG | + | chr1_2:22175670-22175689 | Msa0062620:intron | 35.0% |
| ACTTTCTTTACCTTCTTCAG+TGG | - | chr1_2:22175768-22175787 | None:intergenic | 35.0% | |
| CAGCTCAAAGGACAATAAAA+GGG | + | chr1_2:22175867-22175886 | Msa0062620:CDS | 35.0% | |
| AAAGGGAAGAGAAAATTCTC+AGG | + | chr1_2:22175884-22175903 | Msa0062620:CDS | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | + | chr1_2:22175894-22175913 | Msa0062620:intron | 35.0% | |
| ATGACACAATCTTACGTCAA+TGG | + | chr1_2:22176278-22176297 | Msa0062620:CDS | 35.0% | |
| !! | TTACGTCAATGGCTATTTCT+TGG | + | chr1_2:22176289-22176308 | Msa0062620:CDS | 35.0% |
| GTAACCACTGTTTCAAATCA+TGG | - | chr1_2:22176372-22176391 | None:intergenic | 35.0% | |
| TGATCTCTTGAAAACTCACT+TGG | - | chr1_2:22176394-22176413 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_2:22176440-22176459 | Msa0062620:intron | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | + | chr1_2:22176469-22176488 | Msa0062620:intron | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | + | chr1_2:22176496-22176515 | Msa0062620:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | + | chr1_2:22176516-22176535 | Msa0062620:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | - | chr1_2:22176764-22176783 | None:intergenic | 35.0% | |
| GTTTATGCCTATTGTACAGA+AGG | + | chr1_2:22176920-22176939 | Msa0062620:intron | 35.0% | |
| GTGTTATGTTTCATCACATC+AGG | - | chr1_2:22176947-22176966 | None:intergenic | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | - | chr1_2:22177101-22177120 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | + | chr1_2:22177098-22177117 | Msa0062620:intron | 35.0% | |
| ATATTGTGGAGTTAAAACCG+GGG | + | chr1_2:22177132-22177151 | Msa0062620:intron | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | + | chr1_2:22177236-22177255 | Msa0062620:intron | 35.0% | |
| TTGGAGATACTTGTCTCTTT+AGG | + | chr1_2:22177255-22177274 | Msa0062620:intron | 35.0% | |
| !! | CAATTTGCTGTGCTTCTTTA+AGG | + | chr1_2:22177312-22177331 | Msa0062620:intron | 35.0% |
| ! | TGTCGCAACACATATAGTTT+TGG | + | chr1_2:22177769-22177788 | Msa0062620:intron | 35.0% |
| CTCGGAAGATCATTCATATT+AGG | - | chr1_2:22177987-22178006 | None:intergenic | 35.0% | |
| TCATGAAGACTTTCTTTACG+AGG | - | chr1_2:22178071-22178090 | None:intergenic | 35.0% | |
| ! | TTCATGACAAGGTATTCAAG+CGG | + | chr1_2:22178084-22178103 | Msa0062620:intron | 35.0% |
| !!! | AAGAATGAAGAGTTTTGGGA+GGG | - | chr1_2:22178219-22178238 | None:intergenic | 35.0% |
| !!! | AAAGAATGAAGAGTTTTGGG+AGG | - | chr1_2:22178220-22178239 | None:intergenic | 35.0% |
| ! | GTGGAAAGAATGAAGAGTTT+TGG | - | chr1_2:22178224-22178243 | None:intergenic | 35.0% |
| GTATTATTATATGCAGTGGC+CGG | + | chr1_2:22178567-22178586 | Msa0062620:intron | 35.0% | |
| TATTATTATATGCAGTGGCC+GGG | + | chr1_2:22178568-22178587 | Msa0062620:intron | 35.0% | |
| ATCGCTTATGGAAATTCCAA+AGG | - | chr1_2:22178925-22178944 | None:intergenic | 35.0% | |
| ATAGCAATCTTGATCGCTTA+TGG | - | chr1_2:22178937-22178956 | None:intergenic | 35.0% | |
| TATTCTGGTCGTGAAATAAG+AGG | + | chr1_2:22179033-22179052 | Msa0062620:intron | 35.0% | |
| GATATTAGGGCTCAATACAT+TGG | - | chr1_2:22179105-22179124 | None:intergenic | 35.0% | |
| ! | TTTGGTTTCATTGTGTTGCA+AGG | - | chr1_2:22179192-22179211 | None:intergenic | 35.0% |
| GGAACTATATGTGCTTGATT+TGG | - | chr1_2:22179210-22179229 | None:intergenic | 35.0% | |
| GCCTTCTTTCATTGAAGATA+TGG | - | chr1_2:22179240-22179259 | None:intergenic | 35.0% | |
| GGTTACTAGTACTAACCATT+GGG | - | chr1_2:22179493-22179512 | None:intergenic | 35.0% | |
| TGGTTACTAGTACTAACCAT+TGG | - | chr1_2:22179494-22179513 | None:intergenic | 35.0% | |
| CAAAATTAGTACTCCATCCT+GGG | - | chr1_2:22179776-22179795 | None:intergenic | 35.0% | |
| TCAAAATTAGTACTCCATCC+TGG | - | chr1_2:22179777-22179796 | None:intergenic | 35.0% | |
| AAAAAAGCCTCCATTAGCTA+AGG | + | chr1_2:22179872-22179891 | Msa0062620:intron | 35.0% | |
| !!! | CTCTTTTTTTCTTCTTCAGG+TGG | + | chr1_2:22179918-22179937 | Msa0062620:intron | 35.0% |
| GTGAGAGATAGGAACATAAA+AGG | - | chr1_2:22180039-22180058 | None:intergenic | 35.0% | |
| AGAAGTAATGATGAGAGAGA+GGG | - | chr1_2:22180069-22180088 | None:intergenic | 35.0% | |
| AAGAAGTAATGATGAGAGAG+AGG | - | chr1_2:22180070-22180089 | None:intergenic | 35.0% | |
| AGAAGCTAGAAAATACCCAA+TGG | + | chr1_2:22180880-22180899 | Msa0062620:intron | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | - | chr1_2:22176372-22176391 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_2:22176440-22176459 | Msa0062620:intron | 35.0% |
| AAAGAAAGATCTTGTATGGG+AGG | + | chr1_2:22181157-22181176 | Msa0062620:intron | 35.0% | |
| GAGGTGGTTGGAAAATATTT+AGG | + | chr1_2:22181176-22181195 | Msa0062620:CDS | 35.0% | |
| ATTATCACTATTACTCGTGC+TGG | + | chr1_2:22181268-22181287 | Msa0062620:CDS | 35.0% | |
| ! | GTAATTGGCCTAACTTATCT+AGG | + | chr1_2:22181547-22181566 | Msa0062620:intron | 35.0% |
| TTATGCTTGTACTGTACAGA+AGG | + | chr1_2:22181715-22181734 | Msa0062620:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | + | chr1_2:22181747-22181766 | Msa0062620:CDS | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | + | chr1_2:22181753-22181772 | Msa0062620:CDS | 35.0% |
| GTATTTGCATAGTGTACCAA+AGG | + | chr1_2:22181877-22181896 | Msa0062620:intron | 35.0% | |
| TAAAAATGGGGAGAAAGTCA+TGG | + | chr1_2:22181939-22181958 | Msa0062620:CDS | 35.0% | |
| ! | ATTTATGAAAGCATGCAGAG+TGG | + | chr1_2:22182024-22182043 | Msa0062620:CDS | 35.0% |
| AAGTGATGAAGAGAGTGATG+AGG | + | chr1_2:22175829-22175848 | Msa0062620:CDS | 40.0% | |
| AAATGTCAAAGCCAGCTCAA+AGG | + | chr1_2:22175855-22175874 | Msa0062620:CDS | 40.0% | |
| ! | CCTTTTATTGTCCTTTGAGC+TGG | - | chr1_2:22175869-22175888 | None:intergenic | 40.0% |
| CCAGCTCAAAGGACAATAAA+AGG | + | chr1_2:22175866-22175885 | Msa0062620:CDS | 40.0% | |
| AGGTAGTAACAAAGTGAGCA+TGG | + | chr1_2:22176184-22176203 | Msa0062620:intron | 40.0% | |
| GAAGGCTAGAAAATACCCAA+TGG | + | chr1_2:22176211-22176230 | Msa0062620:CDS | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | + | chr1_2:22176515-22176534 | Msa0062620:intron | 40.0% | |
| TTGTCACTATATACTCGTGC+CGG | + | chr1_2:22176608-22176627 | Msa0062620:intron | 40.0% | |
| GCAATCCCAAAGAAACTACT+AGG | + | chr1_2:22176638-22176657 | Msa0062620:intron | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | + | chr1_2:22176753-22176772 | Msa0062620:intron | 40.0% | |
| ATCAGGACCTTCTGTACAAT+AGG | - | chr1_2:22176930-22176949 | None:intergenic | 40.0% | |
| GTATTTGCAGACTGTACCAA+AGG | + | chr1_2:22177082-22177101 | Msa0062620:intron | 40.0% | |
| GAGAAAGTCATGGTTCGTAA+AGG | + | chr1_2:22177154-22177173 | Msa0062620:intron | 40.0% | |
| TTGAAGCAGTGACGTTGAAT+TGG | + | chr1_2:22177543-22177562 | Msa0062620:intron | 40.0% | |
| TGAAGCAGTGACGTTGAATT+GGG | + | chr1_2:22177544-22177563 | Msa0062620:intron | 40.0% | |
| !!! | ACAAAGCAAAGCCACTTTTG+TGG | + | chr1_2:22177611-22177630 | Msa0062620:intron | 40.0% |
| ATTAGATTAGGAGGAGAGCT+CGG | - | chr1_2:22178005-22178024 | None:intergenic | 40.0% | |
| GGAGTTTGGAGAGGAATAAA+GGG | - | chr1_2:22178271-22178290 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTCGGAGTT+TGG | - | chr1_2:22178285-22178304 | None:intergenic | 40.0% |
| ATTATTATATGCAGTGGCCG+GGG | + | chr1_2:22178569-22178588 | Msa0062620:intron | 40.0% | |
| TAGTTCGATCAATGACTCGT+TGG | + | chr1_2:22178720-22178739 | Msa0062620:intron | 40.0% | |
| !!! | TTTTTGGGAGGTGTTTTGCT+AGG | + | chr1_2:22178881-22178900 | Msa0062620:intron | 40.0% |
| !!! | TTTTGGGAGGTGTTTTGCTA+GGG | + | chr1_2:22178882-22178901 | Msa0062620:intron | 40.0% |
| ! | CACGACCAGAATATCGATTA+TGG | - | chr1_2:22179026-22179045 | None:intergenic | 40.0% |
| CATAGGATAATATCCCAGGA+TGG | + | chr1_2:22179760-22179779 | Msa0062620:intron | 40.0% | |
| TTCTTCAGGTGGTAACAAAG+CGG | + | chr1_2:22179929-22179948 | Msa0062620:intron | 40.0% | |
| AGGGAAATCATGTGAGAGAT+AGG | - | chr1_2:22180050-22180069 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTGGCTA+TGG | + | chr1_2:22180854-22180873 | Msa0062620:intron | 40.0% | |
| ! | CAGCTTAAGAATGTGCCATT+GGG | - | chr1_2:22180898-22180917 | None:intergenic | 40.0% |
| ACAGCTTAAGAATGTGCCAT+TGG | - | chr1_2:22180899-22180918 | None:intergenic | 40.0% | |
| GCAATCGCAAAGAAACTACT+AGG | + | chr1_2:22181298-22181317 | Msa0062620:CDS | 40.0% | |
| GTGTTATGCTTCATCACATC+AGG | - | chr1_2:22181742-22181761 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGCAATATG+CGG | + | chr1_2:22175484-22175503 | Msa0062620:intron | 45.0% | |
| CAAAGTGAGCATGGTGAAGA+AGG | + | chr1_2:22176193-22176212 | Msa0062620:CDS | 45.0% | |
| ! | CAGCTTCAGATTGTGCCATT+GGG | - | chr1_2:22176229-22176248 | None:intergenic | 45.0% |
| ACAGCTTCAGATTGTGCCAT+TGG | - | chr1_2:22176230-22176249 | None:intergenic | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_2:22176430-22176449 | Msa0062620:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_2:22176447-22176466 | Msa0062620:intron | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | + | chr1_2:22176450-22176469 | Msa0062620:intron | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | + | chr1_2:22176499-22176518 | Msa0062620:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | - | chr1_2:22176630-22176649 | None:intergenic | 45.0% |
| TTTGGTGAAGAACACAGCCT+CGG | + | chr1_2:22176976-22176995 | Msa0062620:intron | 45.0% | |
| TAAAACCGGGGAGAAAGTCA+TGG | + | chr1_2:22177144-22177163 | Msa0062620:intron | 45.0% | |
| !! | ATGAGAGTATTCGTGGCTGT+AGG | + | chr1_2:22177186-22177205 | Msa0062620:intron | 45.0% |
| AGTATTCGTGGCTGTAGGTT+CGG | + | chr1_2:22177191-22177210 | Msa0062620:intron | 45.0% | |
| ! | GCTGTAGGTTCGGTAAAGAT+TGG | + | chr1_2:22177201-22177220 | Msa0062620:intron | 45.0% |
| !! | TGCTTCTTTAAGGCGCTAAC+TGG | + | chr1_2:22177322-22177341 | Msa0062620:intron | 45.0% |
| AGTTGTATCGTGTCTGCCTT+TGG | + | chr1_2:22177413-22177432 | Msa0062620:intron | 45.0% | |
| GAAGCAGTGACGTTGAATTG+GGG | + | chr1_2:22177545-22177564 | Msa0062620:intron | 45.0% | |
| TGCGACACGCGTAATTATAG+TGG | - | chr1_2:22177756-22177775 | None:intergenic | 45.0% | |
| GAGCTCTCCTCCTAATCTAA+TGG | + | chr1_2:22178004-22178023 | Msa0062620:intron | 45.0% | |
| ! | CAAGGTATTCAAGCGGTGTT+CGG | + | chr1_2:22178091-22178110 | Msa0062620:intron | 45.0% |
| AAGCTGTATGTGTCTGCCTT+TGG | + | chr1_2:22178163-22178182 | Msa0062620:intron | 45.0% | |
| !!! | ATGAAGAGTTTTGGGAGGGT+AGG | - | chr1_2:22178215-22178234 | None:intergenic | 45.0% |
| CGGAGTTTGGAGAGGAATAA+AGG | - | chr1_2:22178272-22178291 | None:intergenic | 45.0% | |
| ! | CTTTGTTTCGGAGTTTGGAG+AGG | - | chr1_2:22178280-22178299 | None:intergenic | 45.0% |
| AATACCATTAACCAGTGCCC+CGG | + | chr1_2:22178410-22178429 | Msa0062620:intron | 45.0% | |
| ! | ATGAATAAGTGGGGTGTCTG+GGG | - | chr1_2:22178601-22178620 | None:intergenic | 45.0% |
| ! | GATGAATAAGTGGGGTGTCT+GGG | - | chr1_2:22178602-22178621 | None:intergenic | 45.0% |
| ! | AGATGAATAAGTGGGGTGTC+TGG | - | chr1_2:22178603-22178622 | None:intergenic | 45.0% |
| ! | TATGAGTGTTGCCGTTCCTT+TGG | + | chr1_2:22178906-22178925 | Msa0062620:intron | 45.0% |
| GTGTGTCTCACTCTCATCAA+TGG | - | chr1_2:22179514-22179533 | None:intergenic | 45.0% | |
| TTGATGAGAGTGAGACACAC+CGG | + | chr1_2:22179514-22179533 | Msa0062620:intron | 45.0% | |
| TCATTCGGGTCCTTAGCTAA+TGG | - | chr1_2:22179885-22179904 | None:intergenic | 45.0% | |
| TGCAGATGATCCATTTCCGT+GGG | - | chr1_2:22179988-22180007 | None:intergenic | 45.0% | |
| TTGCAGATGATCCATTTCCG+TGG | - | chr1_2:22179989-22180008 | None:intergenic | 45.0% | |
| TGTGAGTTGTGACCAATGCA+TGG | + | chr1_2:22180407-22180426 | Msa0062620:intron | 45.0% | |
| AGTTGTGACCAATGCATGGT+TGG | + | chr1_2:22180411-22180430 | Msa0062620:intron | 45.0% | |
| ACCAATGCATGGTTGGAACT+TGG | + | chr1_2:22180418-22180437 | Msa0062620:intron | 45.0% | |
| TCCAAGTTCCAACCATGCAT+TGG | - | chr1_2:22180422-22180441 | None:intergenic | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_2:22176430-22176449 | Msa0062620:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_2:22176447-22176466 | Msa0062620:intron | 45.0% |
| GAAAGATCTTGTATGGGAGG+TGG | + | chr1_2:22181160-22181179 | Msa0062620:intron | 45.0% | |
| AAAGCATGCAGAGTGGAGAT+TGG | + | chr1_2:22182031-22182050 | Msa0062620:CDS | 45.0% | |
| !! | TAATATATGATAAAAAAAAT+TGG | + | chr1_2:22176122-22176141 | Msa0062620:intron | 5.0% |
| !!! | TTATAATTTTTTTATGAAAA+AGG | + | chr1_2:22176701-22176720 | Msa0062620:intron | 5.0% |
| !!! | TTTATATTTTCAATTATTTT+TGG | + | chr1_2:22178865-22178884 | Msa0062620:intron | 5.0% |
| !!! | TTATATTTTCAATTATTTTT+GGG | + | chr1_2:22178866-22178885 | Msa0062620:intron | 5.0% |
| !!! | ATTATTTTTTTTGTTAAAAT+TGG | - | chr1_2:22180271-22180290 | None:intergenic | 5.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | + | chr1_2:22181471-22181490 | Msa0062620:intron | 5.0% |
| TGTGCTGAAGCCACTGAAGA+AGG | + | chr1_2:22175755-22175774 | Msa0062620:CDS | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | + | chr1_2:22176461-22176480 | Msa0062620:intron | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | + | chr1_2:22176503-22176522 | Msa0062620:intron | 50.0% |
| ACGAACCATGACTTTCTCCC+CGG | - | chr1_2:22177152-22177171 | None:intergenic | 50.0% | |
| GTTGAGGGAAGAGACAACAG+TGG | + | chr1_2:22178119-22178138 | Msa0062620:intron | 50.0% | |
| ATACCATTAACCAGTGCCCC+GGG | + | chr1_2:22178411-22178430 | Msa0062620:intron | 50.0% | |
| CCAACTGAGCTATGCTCATG+GGG | - | chr1_2:22178538-22178557 | None:intergenic | 50.0% | |
| GCCAACTGAGCTATGCTCAT+GGG | - | chr1_2:22178539-22178558 | None:intergenic | 50.0% | |
| TGCCAACTGAGCTATGCTCA+TGG | - | chr1_2:22178540-22178559 | None:intergenic | 50.0% | |
| ATGAGCATAGCTCAGTTGGC+AGG | + | chr1_2:22178539-22178558 | Msa0062620:intron | 50.0% | |
| TGAGCATAGCTCAGTTGGCA+GGG | + | chr1_2:22178540-22178559 | Msa0062620:intron | 50.0% | |
| !! | TGACTCGTTGGCTCGATAGT+TGG | + | chr1_2:22178732-22178751 | Msa0062620:intron | 50.0% |
| GACACACCGGAAAGACACAT+CGG | + | chr1_2:22179527-22179546 | Msa0062620:intron | 50.0% | |
| GGAGAACCGATGTGTCTTTC+CGG | - | chr1_2:22179536-22179555 | None:intergenic | 50.0% | |
| TTCGGGTCCTTAGCTAATGG+AGG | - | chr1_2:22179882-22179901 | None:intergenic | 50.0% | |
| TAACAAAGCGGCATGGTGAG+AGG | + | chr1_2:22179941-22179960 | Msa0062620:intron | 50.0% | |
| ACGAGAAGTCGAGAATCCCA+CGG | + | chr1_2:22179969-22179988 | Msa0062620:intron | 50.0% | |
| AGTCGAGAATCCCACGGAAA+TGG | + | chr1_2:22179975-22179994 | Msa0062620:intron | 50.0% | |
| GAGATATGGATTCCCTGCAG+CGG | - | chr1_2:22180153-22180172 | None:intergenic | 50.0% | |
| GGAGTGTGGAAGTGAGTTTG+AGG | + | chr1_2:22181117-22181136 | Msa0062620:CDS | 50.0% | |
| GATCTTGTATGGGAGGTGGT+TGG | + | chr1_2:22181164-22181183 | Msa0062620:intron | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | + | chr1_2:22181771-22181790 | Msa0062620:CDS | 50.0% | |
| !! | ATGAGAGTATTCGTGGCTGC+AGG | + | chr1_2:22181981-22182000 | Msa0062620:CDS | 50.0% |
| AGTATTCGTGGCTGCAGGTT+CGG | + | chr1_2:22181986-22182005 | Msa0062620:CDS | 50.0% | |
| ! | GCTGCAGGTTCGGTAAAGAT+TGG | + | chr1_2:22181996-22182015 | Msa0062620:CDS | 50.0% |
| GTGAAGAACACAGCCTCGGT+AGG | + | chr1_2:22176980-22176999 | Msa0062620:intron | 55.0% | |
| CGGTGTTCGGTTGACGTTGA+GGG | + | chr1_2:22178104-22178123 | Msa0062620:intron | 55.0% | |
| GAGACAACAGTGGTGCAAGC+AGG | + | chr1_2:22178129-22178148 | Msa0062620:intron | 55.0% | |
| TGGGAGGGTAGGACTTTGAG+AGG | - | chr1_2:22178204-22178223 | None:intergenic | 55.0% | |
| TACCATTAACCAGTGCCCCG+GGG | + | chr1_2:22178412-22178431 | Msa0062620:intron | 55.0% | |
| CCCCATGAGCATAGCTCAGT+TGG | + | chr1_2:22178535-22178554 | Msa0062620:intron | 55.0% | |
| CAGGTGGTAACAAAGCGGCA+TGG | + | chr1_2:22179934-22179953 | Msa0062620:intron | 55.0% | |
| ! | AAAAGGGCAGCAGAGAGTGC+AGG | - | chr1_2:22180022-22180041 | None:intergenic | 55.0% |
| GCGGTGTTCGGTTGACGTTG+AGG | + | chr1_2:22178103-22178122 | Msa0062620:intron | 60.0% | |
| ACCATTAACCAGTGCCCCGG+GGG | + | chr1_2:22178413-22178432 | Msa0062620:intron | 60.0% | |
| AAATGCTAACCGGTGCCCCC+GGG | - | chr1_2:22178431-22178450 | None:intergenic | 60.0% | |
| GAAATGCTAACCGGTGCCCC+CGG | - | chr1_2:22178432-22178451 | None:intergenic | 60.0% | |
| TATGGATTCCCTGCAGCGGC+AGG | - | chr1_2:22180149-22180168 | None:intergenic | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | + | chr1_2:22181775-22181794 | Msa0062620:intron | 60.0% | |
| AATGCTAACCGGTGCCCCCG+GGG | - | chr1_2:22178430-22178449 | None:intergenic | 65.0% | |
| ! | GGTGTCTGGGGTTCGAACCC+CGG | - | chr1_2:22178589-22178608 | None:intergenic | 65.0% |
| !! | GCCCCCGGGGCACTGGTTAA+TGG | - | chr1_2:22178417-22178436 | None:intergenic | 70.0% |
| CAGCACGTCCTGCCGCTGCA+GGG | + | chr1_2:22180138-22180157 | Msa0062620:intron | 70.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | chr1_2:22178419-22178438 | Msa0062620:intron | 75.0% |
| GCAGCACGTCCTGCCGCTGC+AGG | + | chr1_2:22180137-22180156 | Msa0062620:intron | 75.0% | |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | chr1_2:22178424-22178443 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22175326 | 22182129 | 22175326 | ID=Msa0062620;Name=Msa0062620 |
| chr1_2 | mRNA | 22175326 | 22182129 | 22175326 | ID=Msa0062620-mRNA-1;Parent=Msa0062620;Name=Msa0062620-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.37|0.22|1|0.37|0.44|9|0|374 |
| chr1_2 | exon | 22175326 | 22175382 | 22175326 | ID=Msa0062620-mRNA-1:exon:8232;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22175485 | 22175623 | 22175485 | ID=Msa0062620-mRNA-1:exon:8233;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22175635 | 22175681 | 22175635 | ID=Msa0062620-mRNA-1:exon:8234;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22175692 | 22175905 | 22175692 | ID=Msa0062620-mRNA-1:exon:8235;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22176186 | 22176310 | 22176186 | ID=Msa0062620-mRNA-1:exon:8236;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22181041 | 22181138 | 22181041 | ID=Msa0062620-mRNA-1:exon:8237;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22181165 | 22181319 | 22181165 | ID=Msa0062620-mRNA-1:exon:8238;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22181734 | 22181792 | 22181734 | ID=Msa0062620-mRNA-1:exon:8239;Parent=Msa0062620-mRNA-1 |
| chr1_2 | exon | 22181899 | 22182129 | 22181899 | ID=Msa0062620-mRNA-1:exon:8240;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22175326 | 22175382 | 22175326 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22175485 | 22175623 | 22175485 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22175635 | 22175681 | 22175635 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22175692 | 22175905 | 22175692 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22176186 | 22176310 | 22176186 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22181041 | 22181138 | 22181041 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22181165 | 22181319 | 22181165 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22181734 | 22181792 | 22181734 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| chr1_2 | CDS | 22181899 | 22182129 | 22181899 | ID=Msa0062620-mRNA-1:cds;Parent=Msa0062620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
