Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062770 | RHN78231.1 | 88.000 | 300 | 36 | 0 | 1 | 300 | 1 | 300 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062770 | sp|Q9ZSH7|Y4158_ARATH | 28.671 | 143 | 96 | 2 | 7 | 147 | 28 | 166 | 2.87e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062770 | A0A396JNG9 | 88.000 | 300 | 36 | 0 | 1 | 300 | 1 | 300 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062770 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062770 | MtrunA17_Chr1g0163261 | 88.000 | 300 | 36 | 0 | 1 | 300 | 1 | 300 | 0.0 | 532 |
| Msa0062770 | MtrunA17_Chr1g0163231 | 57.047 | 298 | 98 | 9 | 1 | 285 | 1 | 281 | 1.90e-105 | 310 |
| Msa0062770 | MtrunA17_Chr1g0171611 | 54.983 | 291 | 103 | 7 | 1 | 285 | 1 | 269 | 6.99e-94 | 281 |
| Msa0062770 | MtrunA17_Chr1g0163251 | 49.508 | 305 | 133 | 5 | 1 | 296 | 1 | 293 | 1.81e-93 | 283 |
| Msa0062770 | MtrunA17_Chr1g0163201 | 45.773 | 343 | 128 | 7 | 24 | 323 | 18 | 345 | 4.55e-90 | 275 |
| Msa0062770 | MtrunA17_Chr1g0163181 | 39.348 | 399 | 157 | 5 | 1 | 327 | 1 | 386 | 1.54e-88 | 272 |
| Msa0062770 | MtrunA17_Chr1g0163151 | 46.703 | 182 | 68 | 2 | 162 | 323 | 2 | 174 | 7.55e-44 | 150 |
| Msa0062770 | MtrunA17_Chr1g0163241 | 52.817 | 142 | 56 | 4 | 24 | 155 | 22 | 162 | 7.36e-39 | 135 |
| Msa0062770 | MtrunA17_Chr1g0162151 | 45.732 | 164 | 73 | 3 | 163 | 314 | 3 | 162 | 1.03e-38 | 137 |
| Msa0062770 | MtrunA17_Chr1g0163091 | 49.254 | 134 | 64 | 1 | 163 | 296 | 3 | 132 | 3.08e-36 | 128 |
| Msa0062770 | MtrunA17_Chr1g0163111 | 41.989 | 181 | 71 | 3 | 184 | 330 | 12 | 192 | 3.59e-36 | 130 |
| Msa0062770 | MtrunA17_Chr6g0476171 | 48.227 | 141 | 70 | 3 | 157 | 294 | 6 | 146 | 2.79e-34 | 126 |
| Msa0062770 | MtrunA17_Chr3g0131891 | 31.879 | 298 | 181 | 9 | 6 | 287 | 16 | 307 | 4.17e-33 | 125 |
| Msa0062770 | MtrunA17_Chr7g0233541 | 33.929 | 280 | 163 | 8 | 25 | 283 | 2 | 280 | 3.02e-32 | 122 |
| Msa0062770 | MtrunA17_Chr1g0163191 | 53.333 | 105 | 45 | 1 | 5 | 109 | 5 | 105 | 4.33e-32 | 117 |
| Msa0062770 | MtrunA17_Chr7g0233561 | 31.833 | 311 | 166 | 9 | 6 | 283 | 15 | 312 | 8.60e-32 | 121 |
| Msa0062770 | MtrunA17_Chr8g0390841 | 30.476 | 315 | 171 | 7 | 8 | 289 | 38 | 337 | 6.75e-31 | 122 |
| Msa0062770 | MtrunA17_Chr4g0067431 | 27.891 | 294 | 176 | 9 | 9 | 273 | 15 | 301 | 6.51e-29 | 113 |
| Msa0062770 | MtrunA17_Chr7g0233521 | 33.212 | 274 | 156 | 10 | 25 | 283 | 2 | 263 | 8.45e-29 | 112 |
| Msa0062770 | MtrunA17_Chr7g0233531 | 31.579 | 266 | 171 | 6 | 25 | 283 | 2 | 263 | 6.48e-28 | 110 |
| Msa0062770 | MtrunA17_Chr1g0163131 | 28.716 | 296 | 184 | 8 | 5 | 279 | 14 | 303 | 3.18e-26 | 106 |
| Msa0062770 | MtrunA17_Chr1g0163101 | 38.854 | 157 | 83 | 4 | 9 | 155 | 17 | 170 | 5.07e-26 | 102 |
| Msa0062770 | MtrunA17_Chr1g0163071 | 26.230 | 305 | 170 | 6 | 25 | 288 | 2 | 292 | 8.97e-26 | 104 |
| Msa0062770 | MtrunA17_Chr1g0163221 | 29.474 | 285 | 183 | 9 | 9 | 281 | 11 | 289 | 1.51e-25 | 105 |
| Msa0062770 | MtrunA17_Chr1g0162161 | 40.559 | 143 | 70 | 4 | 25 | 155 | 4 | 143 | 2.07e-25 | 100 |
| Msa0062770 | MtrunA17_Chr1g0208771 | 27.759 | 299 | 165 | 10 | 24 | 287 | 12 | 294 | 1.40e-24 | 103 |
| Msa0062770 | MtrunA17_Chr7g0233571 | 33.491 | 212 | 121 | 5 | 4 | 197 | 5 | 214 | 9.65e-24 | 97.4 |
| Msa0062770 | MtrunA17_Chr3g0103171 | 24.904 | 261 | 192 | 3 | 24 | 281 | 5 | 264 | 1.33e-22 | 95.1 |
| Msa0062770 | MtrunA17_Chr3g0103181 | 26.449 | 276 | 193 | 5 | 6 | 279 | 9 | 276 | 1.74e-22 | 95.1 |
| Msa0062770 | MtrunA17_Chr5g0419201 | 41.667 | 108 | 61 | 1 | 3 | 108 | 10 | 117 | 2.18e-21 | 90.1 |
| Msa0062770 | MtrunA17_Chr1g0163121 | 49.425 | 87 | 43 | 1 | 23 | 109 | 9 | 94 | 5.95e-21 | 87.8 |
| Msa0062770 | MtrunA17_Chr1g0163141 | 34.146 | 164 | 74 | 5 | 23 | 155 | 9 | 169 | 6.63e-21 | 88.6 |
| Msa0062770 | MtrunA17_Chr3g0103191 | 29.384 | 211 | 135 | 4 | 6 | 209 | 9 | 212 | 7.24e-21 | 90.1 |
| Msa0062770 | MtrunA17_Chr6g0476181 | 36.765 | 136 | 82 | 3 | 25 | 157 | 2 | 136 | 1.03e-20 | 87.4 |
| Msa0062770 | MtrunA17_Chr1g0163081 | 45.556 | 90 | 48 | 1 | 25 | 114 | 6 | 94 | 1.81e-20 | 86.3 |
| Msa0062770 | MtrunA17_Chr3g0103151 | 44.118 | 102 | 53 | 2 | 6 | 105 | 9 | 108 | 2.85e-20 | 86.3 |
| Msa0062770 | MtrunA17_Chr6g0467351 | 43.000 | 100 | 54 | 2 | 9 | 105 | 15 | 114 | 1.66e-17 | 80.5 |
| Msa0062770 | MtrunA17_Chr5g0419211 | 37.363 | 91 | 56 | 1 | 205 | 294 | 11 | 101 | 1.32e-14 | 69.3 |
| Msa0062770 | MtrunA17_Chr1g0163161 | 41.026 | 78 | 45 | 1 | 37 | 114 | 1 | 77 | 1.38e-14 | 69.7 |
| Msa0062770 | MtrunA17_Chr5g0429931 | 27.138 | 269 | 153 | 9 | 24 | 284 | 10 | 243 | 1.87e-13 | 69.3 |
| Msa0062770 | MtrunA17_Chr1g0163061 | 40.000 | 100 | 57 | 2 | 9 | 105 | 15 | 114 | 3.06e-13 | 68.9 |
| Msa0062770 | MtrunA17_Chr3g0077411 | 24.825 | 286 | 170 | 10 | 9 | 281 | 262 | 515 | 5.67e-13 | 69.7 |
| Msa0062770 | MtrunA17_Chr3g0077451 | 25.092 | 271 | 153 | 9 | 23 | 286 | 10 | 237 | 1.05e-12 | 67.0 |
| Msa0062770 | MtrunA17_Chr4g0033961 | 34.343 | 99 | 63 | 1 | 9 | 105 | 6 | 104 | 9.06e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062770 | AT3G18990.1 | 24.561 | 342 | 193 | 11 | 6 | 286 | 2 | 339 | 1.84e-17 | 82.4 |
| Msa0062770 | AT3G18990.2 | 24.269 | 342 | 194 | 11 | 6 | 286 | 2 | 339 | 9.49e-17 | 80.9 |
| Msa0062770 | AT4G01580.1 | 28.671 | 143 | 96 | 2 | 7 | 147 | 28 | 166 | 2.92e-14 | 70.9 |
| Msa0062770 | AT1G49475.1 | 34.746 | 118 | 72 | 4 | 7 | 121 | 32 | 147 | 4.05e-11 | 62.0 |
| Msa0062770 | AT3G18960.2 | 26.452 | 155 | 100 | 2 | 7 | 147 | 28 | 182 | 6.12e-11 | 61.2 |
Find 48 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCAACTTCAACTTCTT+AGG | 0.174398 | 1_2:-22510692 | None:intergenic |
| GTGCTAAACAAGATGTATTT+TGG | 0.183994 | 1_2:+22509450 | Msa0062770:CDS |
| TGTTTCAAAGTTGAAATATT+TGG | 0.186197 | 1_2:+22509575 | Msa0062770:CDS |
| TTATGCCAAAGGATGTTATT+TGG | 0.223238 | 1_2:+22509991 | Msa0062770:CDS |
| TGTAGCTTCACAAAATATTT+AGG | 0.226635 | 1_2:-22509383 | None:intergenic |
| TGACATTTCAACTTCAAAAC+TGG | 0.262282 | 1_2:-22509963 | None:intergenic |
| AAATTTGGTGGAGTTGAAAA+TGG | 0.280707 | 1_2:+22511045 | Msa0062770:CDS |
| ACATCTTGTTTAGCACCATT+TGG | 0.328942 | 1_2:-22509443 | None:intergenic |
| AAGAGGATGTCATGAAAATT+TGG | 0.332779 | 1_2:+22511030 | Msa0062770:CDS |
| TGGAGCGTGACGGTGATATT+TGG | 0.333381 | 1_2:+22509474 | Msa0062770:CDS |
| CGAAATCAAGAACTGCAAAA+TGG | 0.345172 | 1_2:+22509249 | Msa0062770:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.382118 | 1_2:+22511086 | Msa0062770:CDS |
| CATCTTGTTTAGCACCATTT+GGG | 0.395094 | 1_2:-22509442 | None:intergenic |
| GACAATGATACAAATACTAA+TGG | 0.398467 | 1_2:+22509668 | Msa0062770:CDS |
| CTTGCAACTTCAACTTCTTA+GGG | 0.410024 | 1_2:-22510691 | None:intergenic |
| ACATACCAAATAACATCCTT+TGG | 0.421093 | 1_2:-22509996 | None:intergenic |
| TGAAAATGGATGGACAATCT+TGG | 0.424466 | 1_2:+22511059 | Msa0062770:CDS |
| AATATTTGGTTGCAATACAT+TGG | 0.465372 | 1_2:+22509589 | Msa0062770:CDS |
| AGCAAGTAATTATCATCCTT+CGG | 0.471414 | 1_2:+22509934 | Msa0062770:CDS |
| TTTGGGAGAGTAAAGACTAC+TGG | 0.484305 | 1_2:-22509425 | None:intergenic |
| ATGATAACAGTGAATAAAAG+TGG | 0.491662 | 1_2:-22510644 | None:intergenic |
| CCAATGGAGTTTATGAAAAG+AGG | 0.499540 | 1_2:+22511013 | Msa0062770:CDS |
| GGTCACAGTAGATGATTTAG+TGG | 0.504279 | 1_2:-22510543 | None:intergenic |
| AACTTCAACTTCTTAGGGCT+AGG | 0.509119 | 1_2:-22510686 | None:intergenic |
| GGTACATCTCAAAGGAGAAA+AGG | 0.512209 | 1_2:+22509695 | Msa0062770:CDS |
| GGGACTGCAAGATTTATAGT+TGG | 0.518296 | 1_2:+22510479 | Msa0062770:CDS |
| GACATTTCAACTTCAAAACT+GGG | 0.528604 | 1_2:-22509962 | None:intergenic |
| AACTTTGCAGGTAGTAATAG+AGG | 0.530172 | 1_2:+22509857 | Msa0062770:intron |
| TTGGTGGAGTTGAAAATGGA+TGG | 0.537978 | 1_2:+22511049 | Msa0062770:CDS |
| GTAGTCTTTACTCTCCCAAA+TGG | 0.552023 | 1_2:+22509428 | Msa0062770:CDS |
| CATCTACTGTGACCACTGGT+TGG | 0.552617 | 1_2:+22510552 | Msa0062770:CDS |
| GATACAAATACTAATGGAGC+TGG | 0.554378 | 1_2:+22509674 | Msa0062770:CDS |
| TAGAGGAGGCAAGATTAAGA+AGG | 0.558763 | 1_2:+22509874 | Msa0062770:CDS |
| AAATCATCTACTGTGACCAC+TGG | 0.561649 | 1_2:+22510548 | Msa0062770:CDS |
| AGGATGTCATGAAAATTTGG+TGG | 0.562321 | 1_2:+22511033 | Msa0062770:CDS |
| TAACAGTGAATAAAAGTGGT+TGG | 0.571261 | 1_2:-22510640 | None:intergenic |
| ATGTCACAATCTTATGCCAA+AGG | 0.583337 | 1_2:+22509980 | Msa0062770:CDS |
| GCTAAATGTCTTCCAACCAG+TGG | 0.593840 | 1_2:-22510564 | None:intergenic |
| ATTTATAGTTGGTGAAGACA+TGG | 0.597265 | 1_2:+22510490 | Msa0062770:CDS |
| ATGGAGCTGGTACATCTCAA+AGG | 0.608801 | 1_2:+22509687 | Msa0062770:CDS |
| TATCATTACTCGAGCAAGAG+AGG | 0.611559 | 1_2:+22510661 | Msa0062770:CDS |
| TATTGAAACAGAGGATACCA+AGG | 0.618184 | 1_2:+22510423 | Msa0062770:intron |
| TATATGCAGGATGTACCCAA+TGG | 0.635208 | 1_2:+22510997 | Msa0062770:intron |
| ACATCTCAAAGGAGAAAAGG+TGG | 0.641604 | 1_2:+22509698 | Msa0062770:CDS |
| ATTGAAACAGAGGATACCAA+GGG | 0.647834 | 1_2:+22510424 | Msa0062770:intron |
| TGGTTTAAAAGAATGCAAAG+TGG | 0.669390 | 1_2:+22511079 | Msa0062770:CDS |
| ATTGCGAAATCTCTTATACG+TGG | 0.669591 | 1_2:+22509518 | Msa0062770:CDS |
| TTTGCAGGTAGTAATAGAGG+AGG | 0.683907 | 1_2:+22509860 | Msa0062770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTTAAATTTTTTTA+AGG | + | chr1_2:22510051-22510070 | Msa0062770:intron | 0.0% |
| !!! | TAATAATTTAAATTTTTTTA+AGG | + | chr1_2:22510051-22510070 | Msa0062770:intron | 0.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_2:22509489-22509508 | Msa0062770:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_2:22509490-22509509 | Msa0062770:CDS | 15.0% |
| !!! | GTTCTAGTTTTTAAATATAA+AGG | + | chr1_2:22509545-22509564 | Msa0062770:CDS | 15.0% |
| !! | TAAAAAACAAAATCTAAAGA+AGG | - | chr1_2:22510324-22510343 | None:intergenic | 15.0% |
| !!! | AAAAAATATAATTTGCAAGT+TGG | + | chr1_2:22510587-22510606 | Msa0062770:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_2:22509489-22509508 | Msa0062770:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_2:22509490-22509509 | Msa0062770:CDS | 15.0% |
| !!! | GTTCTAGTTTTTAAATATAA+AGG | + | chr1_2:22509545-22509564 | Msa0062770:CDS | 15.0% |
| !! | TAAAAAACAAAATCTAAAGA+AGG | - | chr1_2:22510324-22510343 | None:intergenic | 15.0% |
| !!! | AAAAAATATAATTTGCAAGT+TGG | + | chr1_2:22510587-22510606 | Msa0062770:CDS | 15.0% |
| !!! | TATTTTGTGTGATTTTTGAA+AGG | - | chr1_2:22509322-22509341 | None:intergenic | 20.0% |
| !! | AAAAATATTTATCTTGCAGA+GGG | + | chr1_2:22509358-22509377 | Msa0062770:intron | 20.0% |
| !!! | CTAGTTTTTAAATATAAAGG+AGG | + | chr1_2:22509548-22509567 | Msa0062770:CDS | 20.0% |
| !! | TGTTTCAAAGTTGAAATATT+TGG | + | chr1_2:22509575-22509594 | Msa0062770:CDS | 20.0% |
| !! | TAAGAGAAATTTCTCAAAAT+AGG | + | chr1_2:22510284-22510303 | Msa0062770:intron | 20.0% |
| !! | CAAATCTCAAATAAATTAAG+AGG | - | chr1_2:22510800-22510819 | None:intergenic | 20.0% |
| !! | AGGATTAATTACATAGAATA+TGG | + | chr1_2:22510841-22510860 | Msa0062770:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGGTGCAA+TGG | + | chr1_2:22510880-22510899 | Msa0062770:intron | 20.0% |
| !! | TGGTTACTATATAGATATAT+AGG | + | chr1_2:22510900-22510919 | Msa0062770:intron | 20.0% |
| !!! | TATTTTGTGTGATTTTTGAA+AGG | - | chr1_2:22509322-22509341 | None:intergenic | 20.0% |
| !! | AAAAATATTTATCTTGCAGA+GGG | + | chr1_2:22509358-22509377 | Msa0062770:intron | 20.0% |
| !!! | CTAGTTTTTAAATATAAAGG+AGG | + | chr1_2:22509548-22509567 | Msa0062770:CDS | 20.0% |
| !! | TGTTTCAAAGTTGAAATATT+TGG | + | chr1_2:22509575-22509594 | Msa0062770:CDS | 20.0% |
| !! | TAAGAGAAATTTCTCAAAAT+AGG | + | chr1_2:22510284-22510303 | Msa0062770:intron | 20.0% |
| !! | CAAATCTCAAATAAATTAAG+AGG | - | chr1_2:22510800-22510819 | None:intergenic | 20.0% |
| !! | AGGATTAATTACATAGAATA+TGG | + | chr1_2:22510841-22510860 | Msa0062770:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGGTGCAA+TGG | + | chr1_2:22510880-22510899 | Msa0062770:intron | 20.0% |
| !! | TGGTTACTATATAGATATAT+AGG | + | chr1_2:22510900-22510919 | Msa0062770:intron | 20.0% |
| !! | TTATCTTGAAGAACTTTTGA+GGG | - | chr1_2:22509227-22509246 | None:intergenic | 25.0% |
| !! | ATTATCTTGAAGAACTTTTG+AGG | - | chr1_2:22509228-22509247 | None:intergenic | 25.0% |
| ! | CAAAAATATTTATCTTGCAG+AGG | + | chr1_2:22509357-22509376 | Msa0062770:intron | 25.0% |
| ! | TGTAGCTTCACAAAATATTT+AGG | - | chr1_2:22509386-22509405 | None:intergenic | 25.0% |
| !! | AATATTTTGTGAAGCTACAT+TGG | + | chr1_2:22509387-22509406 | Msa0062770:CDS | 25.0% |
| !! | TGCTAAACAAGATGTATTTT+GGG | + | chr1_2:22509451-22509470 | Msa0062770:CDS | 25.0% |
| ! | AATATTTGGTTGCAATACAT+TGG | + | chr1_2:22509589-22509608 | Msa0062770:CDS | 25.0% |
| !! | TTCAGCTTCAACTTTTATAT+TGG | - | chr1_2:22509627-22509646 | None:intergenic | 25.0% |
| ! | GACAATGATACAAATACTAA+TGG | + | chr1_2:22509668-22509687 | Msa0062770:CDS | 25.0% |
| ! | GCTAAACAGAAAAAAATCAA+AGG | + | chr1_2:22509749-22509768 | Msa0062770:CDS | 25.0% |
| !! | TTTTATATGTGTAACTTTGC+AGG | + | chr1_2:22509845-22509864 | Msa0062770:intron | 25.0% |
| !! | TCTATCAAACTTCTCTATTT+TGG | + | chr1_2:22510021-22510040 | Msa0062770:intron | 25.0% |
| !! | TTTAAAGTGTGTGTAACAAA+TGG | + | chr1_2:22510340-22510359 | Msa0062770:intron | 25.0% |
| ! | ACAAACTAATATTGAAACAG+AGG | + | chr1_2:22510414-22510433 | Msa0062770:intron | 25.0% |
| ! | AATACTTGAAAAAGTTGCAA+GGG | + | chr1_2:22510459-22510478 | Msa0062770:CDS | 25.0% |
| ! | ATGATAACAGTGAATAAAAG+TGG | - | chr1_2:22510647-22510666 | None:intergenic | 25.0% |
| ! | TTCTATGTAATTAATCCTAC+CGG | - | chr1_2:22510839-22510858 | None:intergenic | 25.0% |
| ! | ACATTGTTCTTTATATATGC+AGG | + | chr1_2:22510984-22511003 | Msa0062770:intron | 25.0% |
| !! | TTATCTTGAAGAACTTTTGA+GGG | - | chr1_2:22509227-22509246 | None:intergenic | 25.0% |
| !! | ATTATCTTGAAGAACTTTTG+AGG | - | chr1_2:22509228-22509247 | None:intergenic | 25.0% |
| ! | CAAAAATATTTATCTTGCAG+AGG | + | chr1_2:22509357-22509376 | Msa0062770:intron | 25.0% |
| ! | TGTAGCTTCACAAAATATTT+AGG | - | chr1_2:22509386-22509405 | None:intergenic | 25.0% |
| !! | AATATTTTGTGAAGCTACAT+TGG | + | chr1_2:22509387-22509406 | Msa0062770:CDS | 25.0% |
| !! | TGCTAAACAAGATGTATTTT+GGG | + | chr1_2:22509451-22509470 | Msa0062770:CDS | 25.0% |
| ! | AATATTTGGTTGCAATACAT+TGG | + | chr1_2:22509589-22509608 | Msa0062770:CDS | 25.0% |
| !! | TTCAGCTTCAACTTTTATAT+TGG | - | chr1_2:22509627-22509646 | None:intergenic | 25.0% |
| ! | GACAATGATACAAATACTAA+TGG | + | chr1_2:22509668-22509687 | Msa0062770:CDS | 25.0% |
| ! | GCTAAACAGAAAAAAATCAA+AGG | + | chr1_2:22509749-22509768 | Msa0062770:CDS | 25.0% |
| !! | TTTTATATGTGTAACTTTGC+AGG | + | chr1_2:22509845-22509864 | Msa0062770:intron | 25.0% |
| !! | TCTATCAAACTTCTCTATTT+TGG | + | chr1_2:22510021-22510040 | Msa0062770:intron | 25.0% |
| !! | TTTAAAGTGTGTGTAACAAA+TGG | + | chr1_2:22510340-22510359 | Msa0062770:intron | 25.0% |
| ! | ACAAACTAATATTGAAACAG+AGG | + | chr1_2:22510414-22510433 | Msa0062770:intron | 25.0% |
| ! | AATACTTGAAAAAGTTGCAA+GGG | + | chr1_2:22510459-22510478 | Msa0062770:CDS | 25.0% |
| ! | ATGATAACAGTGAATAAAAG+TGG | - | chr1_2:22510647-22510666 | None:intergenic | 25.0% |
| ! | TTCTATGTAATTAATCCTAC+CGG | - | chr1_2:22510839-22510858 | None:intergenic | 25.0% |
| ! | ACATTGTTCTTTATATATGC+AGG | + | chr1_2:22510984-22511003 | Msa0062770:intron | 25.0% |
| ! | GTGCTAAACAAGATGTATTT+TGG | + | chr1_2:22509450-22509469 | Msa0062770:CDS | 30.0% |
| !! | TAAACAAGATGTATTTTGGG+TGG | + | chr1_2:22509454-22509473 | Msa0062770:CDS | 30.0% |
| TGGCAAGAGAAAAATGAATA+TGG | + | chr1_2:22509718-22509737 | Msa0062770:CDS | 30.0% | |
| AGCAAGTAATTATCATCCTT+CGG | + | chr1_2:22509934-22509953 | Msa0062770:CDS | 30.0% | |
| GACATTTCAACTTCAAAACT+GGG | - | chr1_2:22509965-22509984 | None:intergenic | 30.0% | |
| TGACATTTCAACTTCAAAAC+TGG | - | chr1_2:22509966-22509985 | None:intergenic | 30.0% | |
| TTATGCCAAAGGATGTTATT+TGG | + | chr1_2:22509991-22510010 | Msa0062770:CDS | 30.0% | |
| ACATACCAAATAACATCCTT+TGG | - | chr1_2:22509999-22510018 | None:intergenic | 30.0% | |
| GAATACTTGAAAAAGTTGCA+AGG | + | chr1_2:22510458-22510477 | Msa0062770:CDS | 30.0% | |
| !! | ATTTATAGTTGGTGAAGACA+TGG | + | chr1_2:22510490-22510509 | Msa0062770:CDS | 30.0% |
| TAACAGTGAATAAAAGTGGT+TGG | - | chr1_2:22510643-22510662 | None:intergenic | 30.0% | |
| TCTATGTAATTAATCCTACC+GGG | - | chr1_2:22510838-22510857 | None:intergenic | 30.0% | |
| !!! | CAGAGATGTTTGTTTTTTAG+AGG | + | chr1_2:22510923-22510942 | Msa0062770:intron | 30.0% |
| ! | CTCTTTTCATAAACTCCATT+GGG | - | chr1_2:22511015-22511034 | None:intergenic | 30.0% |
| AAGAGGATGTCATGAAAATT+TGG | + | chr1_2:22511030-22511049 | Msa0062770:CDS | 30.0% | |
| ! | AAATTTGGTGGAGTTGAAAA+TGG | + | chr1_2:22511045-22511064 | Msa0062770:CDS | 30.0% |
| TGGTTTAAAAGAATGCAAAG+TGG | + | chr1_2:22511079-22511098 | Msa0062770:CDS | 30.0% | |
| ! | GTGCTAAACAAGATGTATTT+TGG | + | chr1_2:22509450-22509469 | Msa0062770:CDS | 30.0% |
| !! | TAAACAAGATGTATTTTGGG+TGG | + | chr1_2:22509454-22509473 | Msa0062770:CDS | 30.0% |
| TGGCAAGAGAAAAATGAATA+TGG | + | chr1_2:22509718-22509737 | Msa0062770:CDS | 30.0% | |
| AGCAAGTAATTATCATCCTT+CGG | + | chr1_2:22509934-22509953 | Msa0062770:CDS | 30.0% | |
| GACATTTCAACTTCAAAACT+GGG | - | chr1_2:22509965-22509984 | None:intergenic | 30.0% | |
| TGACATTTCAACTTCAAAAC+TGG | - | chr1_2:22509966-22509985 | None:intergenic | 30.0% | |
| TTATGCCAAAGGATGTTATT+TGG | + | chr1_2:22509991-22510010 | Msa0062770:CDS | 30.0% | |
| ACATACCAAATAACATCCTT+TGG | - | chr1_2:22509999-22510018 | None:intergenic | 30.0% | |
| GAATACTTGAAAAAGTTGCA+AGG | + | chr1_2:22510458-22510477 | Msa0062770:CDS | 30.0% | |
| !! | ATTTATAGTTGGTGAAGACA+TGG | + | chr1_2:22510490-22510509 | Msa0062770:CDS | 30.0% |
| TAACAGTGAATAAAAGTGGT+TGG | - | chr1_2:22510643-22510662 | None:intergenic | 30.0% | |
| TCTATGTAATTAATCCTACC+GGG | - | chr1_2:22510838-22510857 | None:intergenic | 30.0% | |
| !!! | CAGAGATGTTTGTTTTTTAG+AGG | + | chr1_2:22510923-22510942 | Msa0062770:intron | 30.0% |
| ! | CTCTTTTCATAAACTCCATT+GGG | - | chr1_2:22511015-22511034 | None:intergenic | 30.0% |
| AAGAGGATGTCATGAAAATT+TGG | + | chr1_2:22511030-22511049 | Msa0062770:CDS | 30.0% | |
| ! | AAATTTGGTGGAGTTGAAAA+TGG | + | chr1_2:22511045-22511064 | Msa0062770:CDS | 30.0% |
| TGGTTTAAAAGAATGCAAAG+TGG | + | chr1_2:22511079-22511098 | Msa0062770:CDS | 30.0% | |
| CGAAATCAAGAACTGCAAAA+TGG | + | chr1_2:22509249-22509268 | Msa0062770:CDS | 35.0% | |
| ! | CATCTTGTTTAGCACCATTT+GGG | - | chr1_2:22509445-22509464 | None:intergenic | 35.0% |
| ! | ACATCTTGTTTAGCACCATT+TGG | - | chr1_2:22509446-22509465 | None:intergenic | 35.0% |
| ATTGCGAAATCTCTTATACG+TGG | + | chr1_2:22509518-22509537 | Msa0062770:CDS | 35.0% | |
| GATACAAATACTAATGGAGC+TGG | + | chr1_2:22509674-22509693 | Msa0062770:CDS | 35.0% | |
| AACTTTGCAGGTAGTAATAG+AGG | + | chr1_2:22509857-22509876 | Msa0062770:intron | 35.0% | |
| ATGTCACAATCTTATGCCAA+AGG | + | chr1_2:22509980-22509999 | Msa0062770:CDS | 35.0% | |
| TATTGAAACAGAGGATACCA+AGG | + | chr1_2:22510423-22510442 | Msa0062770:intron | 35.0% | |
| ATTGAAACAGAGGATACCAA+GGG | + | chr1_2:22510424-22510443 | Msa0062770:intron | 35.0% | |
| TATTCTCTCGAAAAATCCCT+TGG | - | chr1_2:22510443-22510462 | None:intergenic | 35.0% | |
| CTTGCAACTTCAACTTCTTA+GGG | - | chr1_2:22510694-22510713 | None:intergenic | 35.0% | |
| TTGTGTGAATTCCTAATACC+CGG | + | chr1_2:22510817-22510836 | Msa0062770:intron | 35.0% | |
| AATTAATCCTACCGGGTATT+AGG | - | chr1_2:22510831-22510850 | None:intergenic | 35.0% | |
| ! | CCTCTTTTCATAAACTCCAT+TGG | - | chr1_2:22511016-22511035 | None:intergenic | 35.0% |
| CCAATGGAGTTTATGAAAAG+AGG | + | chr1_2:22511013-22511032 | Msa0062770:CDS | 35.0% | |
| AGGATGTCATGAAAATTTGG+TGG | + | chr1_2:22511033-22511052 | Msa0062770:CDS | 35.0% | |
| TGAAAATGGATGGACAATCT+TGG | + | chr1_2:22511059-22511078 | Msa0062770:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_2:22511086-22511105 | Msa0062770:CDS | 35.0% | |
| CGAAATCAAGAACTGCAAAA+TGG | + | chr1_2:22509249-22509268 | Msa0062770:CDS | 35.0% | |
| ! | CATCTTGTTTAGCACCATTT+GGG | - | chr1_2:22509445-22509464 | None:intergenic | 35.0% |
| ! | ACATCTTGTTTAGCACCATT+TGG | - | chr1_2:22509446-22509465 | None:intergenic | 35.0% |
| ATTGCGAAATCTCTTATACG+TGG | + | chr1_2:22509518-22509537 | Msa0062770:CDS | 35.0% | |
| GATACAAATACTAATGGAGC+TGG | + | chr1_2:22509674-22509693 | Msa0062770:CDS | 35.0% | |
| AACTTTGCAGGTAGTAATAG+AGG | + | chr1_2:22509857-22509876 | Msa0062770:intron | 35.0% | |
| ATGTCACAATCTTATGCCAA+AGG | + | chr1_2:22509980-22509999 | Msa0062770:CDS | 35.0% | |
| TATTGAAACAGAGGATACCA+AGG | + | chr1_2:22510423-22510442 | Msa0062770:intron | 35.0% | |
| ATTGAAACAGAGGATACCAA+GGG | + | chr1_2:22510424-22510443 | Msa0062770:intron | 35.0% | |
| TATTCTCTCGAAAAATCCCT+TGG | - | chr1_2:22510443-22510462 | None:intergenic | 35.0% | |
| CTTGCAACTTCAACTTCTTA+GGG | - | chr1_2:22510694-22510713 | None:intergenic | 35.0% | |
| TTGTGTGAATTCCTAATACC+CGG | + | chr1_2:22510817-22510836 | Msa0062770:intron | 35.0% | |
| AATTAATCCTACCGGGTATT+AGG | - | chr1_2:22510831-22510850 | None:intergenic | 35.0% | |
| ! | CCTCTTTTCATAAACTCCAT+TGG | - | chr1_2:22511016-22511035 | None:intergenic | 35.0% |
| CCAATGGAGTTTATGAAAAG+AGG | + | chr1_2:22511013-22511032 | Msa0062770:CDS | 35.0% | |
| AGGATGTCATGAAAATTTGG+TGG | + | chr1_2:22511033-22511052 | Msa0062770:CDS | 35.0% | |
| TGAAAATGGATGGACAATCT+TGG | + | chr1_2:22511059-22511078 | Msa0062770:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_2:22511086-22511105 | Msa0062770:CDS | 35.0% | |
| TTTGGGAGAGTAAAGACTAC+TGG | - | chr1_2:22509428-22509447 | None:intergenic | 40.0% | |
| GTAGTCTTTACTCTCCCAAA+TGG | + | chr1_2:22509428-22509447 | Msa0062770:CDS | 40.0% | |
| GGTACATCTCAAAGGAGAAA+AGG | + | chr1_2:22509695-22509714 | Msa0062770:CDS | 40.0% | |
| ACATCTCAAAGGAGAAAAGG+TGG | + | chr1_2:22509698-22509717 | Msa0062770:CDS | 40.0% | |
| TTTGCAGGTAGTAATAGAGG+AGG | + | chr1_2:22509860-22509879 | Msa0062770:intron | 40.0% | |
| TAGAGGAGGCAAGATTAAGA+AGG | + | chr1_2:22509874-22509893 | Msa0062770:CDS | 40.0% | |
| ! | TCAAAACTGGGATTTTCCGA+AGG | - | chr1_2:22509953-22509972 | None:intergenic | 40.0% |
| AAGCTCAATTCACAGTTCAC+TGG | - | chr1_2:22510119-22510138 | None:intergenic | 40.0% | |
| GGGACTGCAAGATTTATAGT+TGG | + | chr1_2:22510479-22510498 | Msa0062770:CDS | 40.0% | |
| GGTCACAGTAGATGATTTAG+TGG | - | chr1_2:22510546-22510565 | None:intergenic | 40.0% | |
| AAATCATCTACTGTGACCAC+TGG | + | chr1_2:22510548-22510567 | Msa0062770:CDS | 40.0% | |
| TATCATTACTCGAGCAAGAG+AGG | + | chr1_2:22510661-22510680 | Msa0062770:CDS | 40.0% | |
| AACTTCAACTTCTTAGGGCT+AGG | - | chr1_2:22510689-22510708 | None:intergenic | 40.0% | |
| CCTTGCAACTTCAACTTCTT+AGG | - | chr1_2:22510695-22510714 | None:intergenic | 40.0% | |
| CCTAAGAAGTTGAAGTTGCA+AGG | + | chr1_2:22510692-22510711 | Msa0062770:intron | 40.0% | |
| TATATGCAGGATGTACCCAA+TGG | + | chr1_2:22510997-22511016 | Msa0062770:intron | 40.0% | |
| TTGGTGGAGTTGAAAATGGA+TGG | + | chr1_2:22511049-22511068 | Msa0062770:CDS | 40.0% | |
| TTTGGGAGAGTAAAGACTAC+TGG | - | chr1_2:22509428-22509447 | None:intergenic | 40.0% | |
| GTAGTCTTTACTCTCCCAAA+TGG | + | chr1_2:22509428-22509447 | Msa0062770:CDS | 40.0% | |
| GGTACATCTCAAAGGAGAAA+AGG | + | chr1_2:22509695-22509714 | Msa0062770:CDS | 40.0% | |
| ACATCTCAAAGGAGAAAAGG+TGG | + | chr1_2:22509698-22509717 | Msa0062770:CDS | 40.0% | |
| TTTGCAGGTAGTAATAGAGG+AGG | + | chr1_2:22509860-22509879 | Msa0062770:intron | 40.0% | |
| TAGAGGAGGCAAGATTAAGA+AGG | + | chr1_2:22509874-22509893 | Msa0062770:CDS | 40.0% | |
| ! | TCAAAACTGGGATTTTCCGA+AGG | - | chr1_2:22509953-22509972 | None:intergenic | 40.0% |
| AAGCTCAATTCACAGTTCAC+TGG | - | chr1_2:22510119-22510138 | None:intergenic | 40.0% | |
| GGGACTGCAAGATTTATAGT+TGG | + | chr1_2:22510479-22510498 | Msa0062770:CDS | 40.0% | |
| GGTCACAGTAGATGATTTAG+TGG | - | chr1_2:22510546-22510565 | None:intergenic | 40.0% | |
| AAATCATCTACTGTGACCAC+TGG | + | chr1_2:22510548-22510567 | Msa0062770:CDS | 40.0% | |
| TATCATTACTCGAGCAAGAG+AGG | + | chr1_2:22510661-22510680 | Msa0062770:CDS | 40.0% | |
| AACTTCAACTTCTTAGGGCT+AGG | - | chr1_2:22510689-22510708 | None:intergenic | 40.0% | |
| CCTTGCAACTTCAACTTCTT+AGG | - | chr1_2:22510695-22510714 | None:intergenic | 40.0% | |
| CCTAAGAAGTTGAAGTTGCA+AGG | + | chr1_2:22510692-22510711 | Msa0062770:intron | 40.0% | |
| TATATGCAGGATGTACCCAA+TGG | + | chr1_2:22510997-22511016 | Msa0062770:intron | 40.0% | |
| TTGGTGGAGTTGAAAATGGA+TGG | + | chr1_2:22511049-22511068 | Msa0062770:CDS | 40.0% | |
| ATGGAGCTGGTACATCTCAA+AGG | + | chr1_2:22509687-22509706 | Msa0062770:CDS | 45.0% | |
| GCTAAATGTCTTCCAACCAG+TGG | - | chr1_2:22510567-22510586 | None:intergenic | 45.0% | |
| GTGAATTCCTAATACCCGGT+AGG | + | chr1_2:22510821-22510840 | Msa0062770:intron | 45.0% | |
| ATGGAGCTGGTACATCTCAA+AGG | + | chr1_2:22509687-22509706 | Msa0062770:CDS | 45.0% | |
| GCTAAATGTCTTCCAACCAG+TGG | - | chr1_2:22510567-22510586 | None:intergenic | 45.0% | |
| GTGAATTCCTAATACCCGGT+AGG | + | chr1_2:22510821-22510840 | Msa0062770:intron | 45.0% | |
| !!! | TAGATTTTTTTTTTTTTTTT+TGG | + | chr1_2:22510872-22510891 | Msa0062770:intron | 5.0% |
| !!! | TAGATTTTTTTTTTTTTTTT+TGG | + | chr1_2:22510872-22510891 | Msa0062770:intron | 5.0% |
| !! | GTATTTTGGGTGGAGCGTGA+CGG | + | chr1_2:22509464-22509483 | Msa0062770:CDS | 50.0% |
| TGGAGCGTGACGGTGATATT+TGG | + | chr1_2:22509474-22509493 | Msa0062770:CDS | 50.0% | |
| CATCTACTGTGACCACTGGT+TGG | + | chr1_2:22510552-22510571 | Msa0062770:CDS | 50.0% | |
| !! | GTATTTTGGGTGGAGCGTGA+CGG | + | chr1_2:22509464-22509483 | Msa0062770:CDS | 50.0% |
| TGGAGCGTGACGGTGATATT+TGG | + | chr1_2:22509474-22509493 | Msa0062770:CDS | 50.0% | |
| CATCTACTGTGACCACTGGT+TGG | + | chr1_2:22510552-22510571 | Msa0062770:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22509210 | 22511132 | 22509210 | ID=Msa0062770;Name=Msa0062770 |
| chr1_2 | mRNA | 22509210 | 22511132 | 22509210 | ID=Msa0062770-mRNA-1;Parent=Msa0062770;Name=Msa0062770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|335 |
| chr1_2 | exon | 22509210 | 22509278 | 22509210 | ID=Msa0062770-mRNA-1:exon:8291;Parent=Msa0062770-mRNA-1 |
| chr1_2 | exon | 22509377 | 22509770 | 22509377 | ID=Msa0062770-mRNA-1:exon:8292;Parent=Msa0062770-mRNA-1 |
| chr1_2 | exon | 22509867 | 22510012 | 22509867 | ID=Msa0062770-mRNA-1:exon:8293;Parent=Msa0062770-mRNA-1 |
| chr1_2 | exon | 22510434 | 22510705 | 22510434 | ID=Msa0062770-mRNA-1:exon:8294;Parent=Msa0062770-mRNA-1 |
| chr1_2 | exon | 22511006 | 22511132 | 22511006 | ID=Msa0062770-mRNA-1:exon:8295;Parent=Msa0062770-mRNA-1 |
| chr1_2 | CDS | 22509210 | 22509278 | 22509210 | ID=Msa0062770-mRNA-1:cds;Parent=Msa0062770-mRNA-1 |
| chr1_2 | CDS | 22509377 | 22509770 | 22509377 | ID=Msa0062770-mRNA-1:cds;Parent=Msa0062770-mRNA-1 |
| chr1_2 | CDS | 22509867 | 22510012 | 22509867 | ID=Msa0062770-mRNA-1:cds;Parent=Msa0062770-mRNA-1 |
| chr1_2 | CDS | 22510434 | 22510705 | 22510434 | ID=Msa0062770-mRNA-1:cds;Parent=Msa0062770-mRNA-1 |
| chr1_2 | CDS | 22511006 | 22511132 | 22511006 | ID=Msa0062770-mRNA-1:cds;Parent=Msa0062770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
