Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062790 | KEH40807.1 | 88.489 | 417 | 45 | 3 | 1 | 417 | 1 | 414 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062790 | A0A072VG97 | 88.489 | 417 | 45 | 3 | 1 | 417 | 1 | 414 | 0.0 | 755 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062790 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062790 | MtrunA17_Chr1g0163231 | 86.986 | 292 | 35 | 3 | 1 | 292 | 1 | 289 | 0.0 | 523 |
| Msa0062790 | MtrunA17_Chr1g0171611 | 81.757 | 296 | 35 | 4 | 1 | 292 | 1 | 281 | 2.86e-167 | 470 |
| Msa0062790 | MtrunA17_Chr1g0163181 | 43.146 | 445 | 202 | 13 | 1 | 411 | 1 | 428 | 2.91e-110 | 331 |
| Msa0062790 | MtrunA17_Chr1g0163201 | 45.610 | 410 | 165 | 13 | 24 | 411 | 18 | 391 | 1.66e-103 | 312 |
| Msa0062790 | MtrunA17_Chr1g0163261 | 52.525 | 297 | 116 | 8 | 1 | 284 | 1 | 285 | 9.13e-97 | 291 |
| Msa0062790 | MtrunA17_Chr1g0163251 | 47.256 | 328 | 143 | 11 | 1 | 309 | 1 | 317 | 1.65e-88 | 274 |
| Msa0062790 | MtrunA17_Chr1g0163111 | 42.629 | 251 | 118 | 9 | 163 | 411 | 1 | 227 | 1.98e-51 | 172 |
| Msa0062790 | MtrunA17_Chr1g0163151 | 40.239 | 251 | 117 | 7 | 163 | 411 | 1 | 220 | 3.29e-50 | 169 |
| Msa0062790 | MtrunA17_Chr1g0162151 | 40.698 | 258 | 104 | 9 | 163 | 417 | 1 | 212 | 3.02e-43 | 150 |
| Msa0062790 | MtrunA17_Chr1g0163241 | 56.693 | 127 | 49 | 2 | 24 | 150 | 22 | 142 | 7.49e-41 | 142 |
| Msa0062790 | MtrunA17_Chr1g0163191 | 53.600 | 125 | 52 | 3 | 1 | 125 | 1 | 119 | 1.62e-37 | 134 |
| Msa0062790 | MtrunA17_Chr6g0476171 | 34.457 | 267 | 139 | 6 | 156 | 411 | 3 | 244 | 1.25e-35 | 131 |
| Msa0062790 | MtrunA17_Chr7g0233561 | 31.250 | 304 | 172 | 10 | 6 | 280 | 15 | 310 | 1.57e-33 | 128 |
| Msa0062790 | MtrunA17_Chr3g0131891 | 29.900 | 301 | 170 | 11 | 6 | 280 | 16 | 301 | 1.32e-31 | 122 |
| Msa0062790 | MtrunA17_Chr8g0390841 | 23.366 | 505 | 274 | 16 | 3 | 413 | 33 | 518 | 6.23e-29 | 118 |
| Msa0062790 | MtrunA17_Chr1g0162161 | 42.953 | 149 | 62 | 5 | 25 | 158 | 4 | 144 | 6.97e-29 | 110 |
| Msa0062790 | MtrunA17_Chr1g0163091 | 48.800 | 125 | 57 | 4 | 163 | 284 | 1 | 121 | 1.35e-27 | 107 |
| Msa0062790 | MtrunA17_Chr1g0208771 | 24.516 | 465 | 258 | 15 | 24 | 413 | 12 | 458 | 8.55e-26 | 108 |
| Msa0062790 | MtrunA17_Chr1g0163101 | 39.375 | 160 | 82 | 6 | 9 | 158 | 17 | 171 | 5.28e-25 | 100 |
| Msa0062790 | MtrunA17_Chr1g0163131 | 42.105 | 152 | 79 | 4 | 269 | 411 | 154 | 305 | 5.58e-25 | 104 |
| Msa0062790 | MtrunA17_Chr1g0163131 | 27.852 | 298 | 189 | 8 | 5 | 281 | 14 | 306 | 3.46e-24 | 102 |
| Msa0062790 | MtrunA17_Chr7g0233531 | 29.856 | 278 | 155 | 11 | 25 | 280 | 2 | 261 | 6.70e-25 | 103 |
| Msa0062790 | MtrunA17_Chr7g0233521 | 28.261 | 276 | 162 | 11 | 25 | 280 | 2 | 261 | 9.65e-24 | 100 |
| Msa0062790 | MtrunA17_Chr7g0233541 | 27.336 | 289 | 165 | 9 | 25 | 280 | 2 | 278 | 1.41e-22 | 97.1 |
| Msa0062790 | MtrunA17_Chr1g0163121 | 36.691 | 139 | 84 | 3 | 20 | 158 | 6 | 140 | 1.55e-21 | 90.1 |
| Msa0062790 | MtrunA17_Chr1g0163141 | 34.756 | 164 | 77 | 5 | 23 | 158 | 9 | 170 | 6.87e-20 | 87.0 |
| Msa0062790 | MtrunA17_Chr1g0163081 | 48.837 | 86 | 42 | 2 | 25 | 110 | 6 | 89 | 1.23e-19 | 85.1 |
| Msa0062790 | MtrunA17_Chr6g0476181 | 36.774 | 155 | 75 | 4 | 25 | 158 | 2 | 154 | 1.23e-19 | 85.5 |
| Msa0062790 | MtrunA17_Chr5g0419201 | 32.584 | 178 | 101 | 5 | 3 | 168 | 10 | 180 | 1.66e-19 | 85.9 |
| Msa0062790 | MtrunA17_Chr4g0067431 | 26.452 | 310 | 176 | 14 | 9 | 280 | 15 | 310 | 3.94e-19 | 87.8 |
| Msa0062790 | MtrunA17_Chr3g0103181 | 25.784 | 287 | 184 | 11 | 6 | 280 | 9 | 278 | 6.67e-19 | 86.3 |
| Msa0062790 | MtrunA17_Chr3g0103171 | 25.185 | 270 | 179 | 8 | 24 | 280 | 5 | 264 | 7.78e-19 | 85.9 |
| Msa0062790 | MtrunA17_Chr7g0233571 | 39.815 | 108 | 62 | 2 | 6 | 111 | 7 | 113 | 2.21e-18 | 83.6 |
| Msa0062790 | MtrunA17_Chr1g0163221 | 24.522 | 314 | 202 | 10 | 9 | 298 | 11 | 313 | 3.24e-18 | 85.5 |
| Msa0062790 | MtrunA17_Chr1g0163071 | 24.080 | 299 | 169 | 9 | 25 | 280 | 2 | 285 | 6.60e-17 | 80.9 |
| Msa0062790 | MtrunA17_Chr3g0103191 | 26.087 | 207 | 142 | 4 | 6 | 204 | 9 | 212 | 1.02e-16 | 79.3 |
| Msa0062790 | MtrunA17_Chr3g0103151 | 33.562 | 146 | 78 | 5 | 6 | 142 | 9 | 144 | 1.27e-16 | 77.0 |
| Msa0062790 | MtrunA17_Chr6g0467351 | 35.811 | 148 | 86 | 4 | 9 | 153 | 15 | 156 | 1.41e-16 | 78.6 |
| Msa0062790 | MtrunA17_Chr1g0163161 | 32.308 | 130 | 78 | 3 | 38 | 158 | 1 | 129 | 1.60e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_2:-22536386 | None:intergenic |
| GTGCTCAACAGGAAATATTT+TGG | 0.162791 | 1_2:+22535305 | Msa0062790:CDS |
| AAAATCTTAACCTTAAAATA+TGG | 0.178478 | 1_2:-22535427 | None:intergenic |
| TCTATTGTGATGATAATATT+TGG | 0.191054 | 1_2:+22536728 | Msa0062790:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1_2:+22537466 | Msa0062790:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1_2:+22535852 | Msa0062790:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_2:+22535239 | Msa0062790:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1_2:-22535280 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1_2:+22536372 | Msa0062790:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_2:-22535274 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.314590 | 1_2:-22534981 | None:intergenic |
| ATATTTGGTTGAATAGAAAC+TGG | 0.315155 | 1_2:+22535344 | Msa0062790:CDS |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_2:-22535236 | None:intergenic |
| TGGAGCGTGACGGTGATATT+TGG | 0.342752 | 1_2:+22535329 | Msa0062790:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1_2:-22536429 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.367124 | 1_2:+22535755 | Msa0062790:CDS |
| ATTTCCTGTTGAGCACCATT+TGG | 0.373513 | 1_2:-22535298 | None:intergenic |
| TCAAAATCATGAACTACATA+AGG | 0.390757 | 1_2:+22535004 | Msa0062790:CDS |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1_2:+22536373 | Msa0062790:CDS |
| ACTCCCAAATGGTGCTCAAC+AGG | 0.399322 | 1_2:+22535294 | Msa0062790:CDS |
| TGGAAGAAAAGAGGCATTGA+AGG | 0.400150 | 1_2:+22536748 | Msa0062790:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_2:-22535235 | None:intergenic |
| TTTCCTGTTGAGCACCATTT+GGG | 0.415520 | 1_2:-22535297 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_2:+22536396 | Msa0062790:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1_2:+22537389 | Msa0062790:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1_2:+22537488 | Msa0062790:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_2:-22535823 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1_2:+22537390 | Msa0062790:CDS |
| ATTAATCAGCAAAGAATCTC+TGG | 0.443135 | 1_2:+22535607 | Msa0062790:CDS |
| AAATCTTAACCTTAAAATAT+GGG | 0.446492 | 1_2:-22535426 | None:intergenic |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1_2:+22536700 | Msa0062790:intron |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1_2:-22537221 | None:intergenic |
| AATATTATGAGAGAACTTGT+AGG | 0.465524 | 1_2:+22537438 | Msa0062790:CDS |
| GAGAGTTCCCAAGAAATTTG+TGG | 0.469633 | 1_2:+22535228 | Msa0062790:intron |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1_2:-22536580 | None:intergenic |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1_2:+22537182 | Msa0062790:intron |
| GATAATATTTGGAAGAAAAG+AGG | 0.503729 | 1_2:+22536739 | Msa0062790:CDS |
| CAAAATCATGAACTACATAA+GGG | 0.508161 | 1_2:+22535005 | Msa0062790:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1_2:+22537449 | Msa0062790:CDS |
| AGTACATACTCGAGAGATCA+TGG | 0.515974 | 1_2:-22536786 | None:intergenic |
| AGAACATGCATTGTCACCTC+TGG | 0.519227 | 1_2:+22536471 | Msa0062790:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1_2:+22537476 | Msa0062790:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.529967 | 1_2:+22536758 | Msa0062790:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1_2:+22537453 | Msa0062790:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1_2:+22535756 | Msa0062790:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.542900 | 1_2:-22536567 | None:intergenic |
| TTCATAGATGAAAGTTGTGA+AGG | 0.547031 | 1_2:+22535493 | Msa0062790:CDS |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1_2:+22535283 | Msa0062790:CDS |
| AACTTTGCAGGTAGGAACAA+AGG | 0.563812 | 1_2:+22535739 | Msa0062790:intron |
| ACATCTCAAAGGAGAGAAAG+TGG | 0.565802 | 1_2:+22535574 | Msa0062790:CDS |
| GATGGCAATGTTAATAGTGC+TGG | 0.575875 | 1_2:+22535550 | Msa0062790:CDS |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1_2:+22535841 | Msa0062790:CDS |
| TATTTGGTTGAATAGAAACT+GGG | 0.581010 | 1_2:+22535345 | Msa0062790:CDS |
| TTTGCAAAGTCTCTAAAACA+TGG | 0.586392 | 1_2:+22535373 | Msa0062790:CDS |
| GGCAAATGGCTTCCAACCAG+AGG | 0.587307 | 1_2:-22536487 | None:intergenic |
| CATGCATTGTCACCTCTGGT+TGG | 0.594204 | 1_2:+22536475 | Msa0062790:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_2:-22536351 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1_2:+22537365 | Msa0062790:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1_2:+22536419 | Msa0062790:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1_2:+22537392 | Msa0062790:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1_2:+22537391 | Msa0062790:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1_2:+22537185 | Msa0062790:intron |
| ATAGTGCTGGCACATCTCAA+AGG | 0.625943 | 1_2:+22535563 | Msa0062790:CDS |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1_2:+22536582 | Msa0062790:CDS |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1_2:-22537580 | None:intergenic |
| TCGTGTGAACTCTACCTACC+CGG | 0.663506 | 1_2:+22537238 | Msa0062790:CDS |
| CATAAGTAATTCTACCGGGT+AGG | 0.665851 | 1_2:-22537252 | None:intergenic |
| GAAGTTGTTGAACTGAGTGA+TGG | 0.670925 | 1_2:+22535532 | Msa0062790:CDS |
| TTTGCAGGTAGGAACAAAGG+AGG | 0.713031 | 1_2:+22535742 | Msa0062790:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1_2:+22536422 | Msa0062790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTATGAATATTTTTATAT+CGG | - | chr1_2:22535482-22535501 | None:intergenic | 10.0% |
| !! | CAAAATAAAATAAAATTACA+AGG | - | chr1_2:22535675-22535694 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | + | chr1_2:22535675-22535694 | Msa0062790:intron | 10.0% |
| !!! | TATGTTCTAAATTATTATTT+AGG | + | chr1_2:22535932-22535951 | Msa0062790:intron | 10.0% |
| !!! | ATTTTTTAGAGATTTTAAAT+AGG | + | chr1_2:22536816-22536835 | Msa0062790:intron | 10.0% |
| !!! | TTTTCAAAAAAATTATAACT+AGG | + | chr1_2:22536873-22536892 | Msa0062790:intron | 10.0% |
| !!! | TTTTATAATATGATTATTGT+CGG | - | chr1_2:22537145-22537164 | None:intergenic | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1_2:22535130-22535149 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1_2:22535200-22535219 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | - | chr1_2:22535429-22535448 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | - | chr1_2:22535430-22535449 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1_2:22535430-22535449 | Msa0062790:CDS | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | - | chr1_2:22535882-22535901 | None:intergenic | 15.0% |
| !! | TAAAATAGCCAATAAATAAT+AGG | - | chr1_2:22536227-22536246 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTACTAGTAATTT+TGG | + | chr1_2:22536283-22536302 | Msa0062790:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1_2:22536511-22536530 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1_2:22536510-22536529 | Msa0062790:CDS | 15.0% |
| !!! | CTTTTTTAAATAAAGTTTGA+AGG | - | chr1_2:22536613-22536632 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | - | chr1_2:22536941-22536960 | None:intergenic | 15.0% |
| !! | AAATCATTTGTAATATATGA+GGG | - | chr1_2:22537001-22537020 | None:intergenic | 15.0% |
| !! | TAAATCATTTGTAATATATG+AGG | - | chr1_2:22537002-22537021 | None:intergenic | 15.0% |
| !! | ACAAATGATTTAATATTTCA+AGG | + | chr1_2:22537010-22537029 | Msa0062790:intron | 15.0% |
| !!! | TTGAACTAGTTTTTTTTAAT+TGG | - | chr1_2:22537038-22537057 | None:intergenic | 15.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | + | chr1_2:22535400-22535419 | Msa0062790:CDS | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | + | chr1_2:22535403-22535422 | Msa0062790:CDS | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | - | chr1_2:22535708-22535727 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | + | chr1_2:22535727-22535746 | Msa0062790:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_2:22536504-22536523 | None:intergenic | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | - | chr1_2:22536662-22536681 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | + | chr1_2:22536728-22536747 | Msa0062790:CDS | 20.0% |
| !! | TTTAACATAAGTAATTCTAC+CGG | - | chr1_2:22537260-22537279 | None:intergenic | 20.0% |
| !! | AGAATTACTTATGTTAAATG+TGG | + | chr1_2:22537262-22537281 | Msa0062790:intron | 20.0% |
| ! | TCAAAATCATGAACTACATA+AGG | + | chr1_2:22535004-22535023 | Msa0062790:CDS | 25.0% |
| ! | CAAAATCATGAACTACATAA+GGG | + | chr1_2:22535005-22535024 | Msa0062790:CDS | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1_2:22535108-22535127 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_2:22535238-22535257 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_2:22535239-22535258 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_2:22535239-22535258 | Msa0062790:CDS | 25.0% |
| ! | ATATTTGGTTGAATAGAAAC+TGG | + | chr1_2:22535344-22535363 | Msa0062790:CDS | 25.0% |
| ! | TATTTGGTTGAATAGAAACT+GGG | + | chr1_2:22535345-22535364 | Msa0062790:CDS | 25.0% |
| !!! | ATAGGTCTTTTAAGTTTCTA+AGG | - | chr1_2:22536132-22536151 | None:intergenic | 25.0% |
| ! | GTATTTGGCCTATTATTTAT+TGG | + | chr1_2:22536216-22536235 | Msa0062790:intron | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_2:22536325-22536344 | Msa0062790:intron | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | + | chr1_2:22536372-22536391 | Msa0062790:CDS | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | + | chr1_2:22536373-22536392 | Msa0062790:CDS | 25.0% |
| ! | GATAATATTTGGAAGAAAAG+AGG | + | chr1_2:22536739-22536758 | Msa0062790:CDS | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | + | chr1_2:22536888-22536907 | Msa0062790:intron | 25.0% |
| ! | TTAACATAAGTAATTCTACC+GGG | - | chr1_2:22537259-22537278 | None:intergenic | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | - | chr1_2:22537428-22537447 | None:intergenic | 25.0% |
| ! | AATATTATGAGAGAACTTGT+AGG | + | chr1_2:22537438-22537457 | Msa0062790:CDS | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | + | chr1_2:22537476-22537495 | Msa0062790:CDS | 25.0% |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1_2:22535183-22535202 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_2:22535277-22535296 | None:intergenic | 30.0% | |
| ! | TGCTCAACAGGAAATATTTT+GGG | + | chr1_2:22535306-22535325 | Msa0062790:CDS | 30.0% |
| !! | TTTGCAAAGTCTCTAAAACA+TGG | + | chr1_2:22535373-22535392 | Msa0062790:CDS | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | + | chr1_2:22535444-22535463 | Msa0062790:CDS | 30.0% |
| TTCATAGATGAAAGTTGTGA+AGG | + | chr1_2:22535493-22535512 | Msa0062790:CDS | 30.0% | |
| ATTAATCAGCAAAGAATCTC+TGG | + | chr1_2:22535607-22535626 | Msa0062790:CDS | 30.0% | |
| ! | GAGGTATTCTACCTTATAAA+TGG | + | chr1_2:22535694-22535713 | Msa0062790:intron | 30.0% |
| !!! | TGTTTTTTAACTTTGCAGGT+AGG | + | chr1_2:22535731-22535750 | Msa0062790:intron | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_2:22535826-22535845 | None:intergenic | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | - | chr1_2:22536183-22536202 | None:intergenic | 30.0% | |
| GTTTCACGTTTGTAACAAAT+AGG | + | chr1_2:22535980-22535999 | Msa0062790:intron | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr1_2:22535998-22536017 | Msa0062790:intron | 30.0% |
| !! | CTGTAACCTTTGAAACTTAA+AGG | - | chr1_2:22536152-22536171 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTACAGAT+AGG | + | chr1_2:22536009-22536028 | Msa0062790:intron | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr1_2:22536027-22536046 | Msa0062790:intron | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr1_2:22536123-22536142 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr1_2:22536038-22536057 | Msa0062790:intron | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr1_2:22536065-22536084 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr1_2:22536038-22536057 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTACAGAT+AGG | - | chr1_2:22536009-22536028 | None:intergenic | 30.0% | |
| !! | CTGTAACCTTTGAAACTTAA+AGG | + | chr1_2:22536152-22536171 | Msa0062790:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | - | chr1_2:22535998-22536017 | None:intergenic | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | + | chr1_2:22536183-22536202 | Msa0062790:intron | 30.0% | |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_2:22536332-22536351 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_2:22536570-22536589 | None:intergenic | 30.0% | |
| AAGTTTGAAGGAAAAACCTT+TGG | - | chr1_2:22536601-22536620 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1_2:22536692-22536711 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_2:22536691-22536710 | Msa0062790:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_2:22536698-22536717 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | - | chr1_2:22536996-22537015 | None:intergenic | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_2:22534984-22535003 | None:intergenic | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | - | chr1_2:22535283-22535302 | None:intergenic | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | + | chr1_2:22535283-22535302 | Msa0062790:CDS | 35.0% | |
| ! | GTGCTCAACAGGAAATATTT+TGG | + | chr1_2:22535305-22535324 | Msa0062790:CDS | 35.0% |
| !! | TCAACAGGAAATATTTTGGG+TGG | + | chr1_2:22535309-22535328 | Msa0062790:CDS | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_2:22535417-22535436 | Msa0062790:CDS | 35.0% |
| ! | ACAAAGGAGGCATAATTAAG+AGG | + | chr1_2:22535755-22535774 | Msa0062790:CDS | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | + | chr1_2:22535756-22535775 | Msa0062790:CDS | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | + | chr1_2:22535852-22535871 | Msa0062790:CDS | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr1_2:22536069-22536088 | Msa0062790:intron | 35.0% |
| GTTTCACGTTTGTAACAGAT+AGG | - | chr1_2:22536179-22536198 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1_2:22536354-22536373 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_2:22536396-22536415 | Msa0062790:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_2:22536700-22536719 | Msa0062790:intron | 35.0% | |
| !! | AAGAGACATAAAGAGTGTCA+TGG | + | chr1_2:22537365-22537384 | Msa0062790:CDS | 35.0% |
| AAATTCGTGCAGTTCACAAA+TGG | + | chr1_2:22537389-22537408 | Msa0062790:CDS | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | + | chr1_2:22537390-22537409 | Msa0062790:CDS | 35.0% | |
| ! | TGCAGGTTGGCATAAATTTA+AGG | + | chr1_2:22537466-22537485 | Msa0062790:CDS | 35.0% |
| GAGAGTTCCCAAGAAATTTG+TGG | + | chr1_2:22535228-22535247 | Msa0062790:intron | 40.0% | |
| TTTCCTGTTGAGCACCATTT+GGG | - | chr1_2:22535300-22535319 | None:intergenic | 40.0% | |
| ATTTCCTGTTGAGCACCATT+TGG | - | chr1_2:22535301-22535320 | None:intergenic | 40.0% | |
| GAAGTTGTTGAACTGAGTGA+TGG | + | chr1_2:22535532-22535551 | Msa0062790:CDS | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | + | chr1_2:22535550-22535569 | Msa0062790:CDS | 40.0% | |
| ACATCTCAAAGGAGAGAAAG+TGG | + | chr1_2:22535574-22535593 | Msa0062790:CDS | 40.0% | |
| AACTTTGCAGGTAGGAACAA+AGG | + | chr1_2:22535739-22535758 | Msa0062790:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | + | chr1_2:22535841-22535860 | Msa0062790:CDS | 40.0% | |
| !! | CTTAACGGAGGTTGATAGAA+AGG | - | chr1_2:22536096-22536115 | None:intergenic | 40.0% |
| CTTTCTATCAACCTCCGTTA+AGG | + | chr1_2:22536094-22536113 | Msa0062790:intron | 40.0% | |
| GGTTTCAGATAGGTCCTTAA+CGG | - | chr1_2:22536111-22536130 | None:intergenic | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | + | chr1_2:22536419-22536438 | Msa0062790:CDS | 40.0% | |
| AACTTCACCTCCACTTTCAT+AGG | - | chr1_2:22536432-22536451 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | - | chr1_2:22536583-22536602 | None:intergenic | 40.0% |
| ATAACTATCACCCAAGCCAA+AGG | + | chr1_2:22536582-22536601 | Msa0062790:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_2:22536595-22536614 | None:intergenic | 40.0% |
| TGAAGGAAAAACCTTTGGCT+TGG | - | chr1_2:22536596-22536615 | None:intergenic | 40.0% | |
| !! | TGGAAGAAAAGAGGCATTGA+AGG | + | chr1_2:22536748-22536767 | Msa0062790:CDS | 40.0% |
| AGTACATACTCGAGAGATCA+TGG | - | chr1_2:22536789-22536808 | None:intergenic | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | + | chr1_2:22537182-22537201 | Msa0062790:intron | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | - | chr1_2:22537224-22537243 | None:intergenic | 40.0% | |
| CATAAGTAATTCTACCGGGT+AGG | - | chr1_2:22537255-22537274 | None:intergenic | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | + | chr1_2:22537391-22537410 | Msa0062790:CDS | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | + | chr1_2:22537402-22537421 | Msa0062790:CDS | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | + | chr1_2:22537449-22537468 | Msa0062790:CDS | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | + | chr1_2:22537488-22537507 | Msa0062790:CDS | 40.0% |
| !! | ATATTTTGGGTGGAGCGTGA+CGG | + | chr1_2:22535319-22535338 | Msa0062790:CDS | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_2:22535563-22535582 | Msa0062790:CDS | 45.0% |
| TTTGCAGGTAGGAACAAAGG+AGG | + | chr1_2:22535742-22535761 | Msa0062790:intron | 45.0% | |
| ATTTAGGCCAAATACCTCCC+TGG | + | chr1_2:22535948-22535967 | Msa0062790:intron | 45.0% | |
| TTTAGGCCAAATACCTCCCT+GGG | + | chr1_2:22535949-22535968 | Msa0062790:intron | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr1_2:22536191-22536210 | None:intergenic | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr1_2:22536190-22536209 | None:intergenic | 45.0% | |
| TTCAGATAGGTCCTTAACGG+AGG | - | chr1_2:22536108-22536127 | None:intergenic | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | + | chr1_2:22536190-22536209 | Msa0062790:intron | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | + | chr1_2:22536191-22536210 | Msa0062790:intron | 45.0% | |
| AATAGGCCAAATACCTCCCT+GGG | - | chr1_2:22536210-22536229 | None:intergenic | 45.0% | |
| TAATAGGCCAAATACCTCCC+TGG | - | chr1_2:22536211-22536230 | None:intergenic | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_2:22536389-22536408 | None:intergenic | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | + | chr1_2:22536422-22536441 | Msa0062790:CDS | 45.0% | |
| AGAACATGCATTGTCACCTC+TGG | + | chr1_2:22536471-22536490 | Msa0062790:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_2:22536758-22536777 | Msa0062790:CDS | 45.0% |
| GTTTCAGCAGACTTAGAAGG+TGG | + | chr1_2:22537185-22537204 | Msa0062790:intron | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | + | chr1_2:22537392-22537411 | Msa0062790:CDS | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | + | chr1_2:22537453-22537472 | Msa0062790:CDS | 45.0% | |
| ACTCCCAAATGGTGCTCAAC+AGG | + | chr1_2:22535294-22535313 | Msa0062790:CDS | 50.0% | |
| TGGAGCGTGACGGTGATATT+TGG | + | chr1_2:22535329-22535348 | Msa0062790:CDS | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr1_2:22536201-22536220 | None:intergenic | 50.0% |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr1_2:22536194-22536213 | None:intergenic | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr1_2:22536194-22536213 | Msa0062790:intron | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr1_2:22536201-22536220 | Msa0062790:intron | 50.0% |
| CATGCATTGTCACCTCTGGT+TGG | + | chr1_2:22536475-22536494 | Msa0062790:CDS | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | + | chr1_2:22537238-22537257 | Msa0062790:CDS | 50.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | - | chr1_2:22536490-22536509 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22534966 | 22537589 | 22534966 | ID=Msa0062790;Name=Msa0062790 |
| chr1_2 | mRNA | 22534966 | 22537589 | 22534966 | ID=Msa0062790-mRNA-1;Parent=Msa0062790;Name=Msa0062790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|417 |
| chr1_2 | exon | 22534966 | 22535034 | 22534966 | ID=Msa0062790-mRNA-1:exon:8296;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22535229 | 22535628 | 22535229 | ID=Msa0062790-mRNA-1:exon:8297;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22535749 | 22535873 | 22535749 | ID=Msa0062790-mRNA-1:exon:8298;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22536345 | 22536603 | 22536345 | ID=Msa0062790-mRNA-1:exon:8299;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22536713 | 22536799 | 22536713 | ID=Msa0062790-mRNA-1:exon:8300;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22537192 | 22537259 | 22537192 | ID=Msa0062790-mRNA-1:exon:8301;Parent=Msa0062790-mRNA-1 |
| chr1_2 | exon | 22537344 | 22537589 | 22537344 | ID=Msa0062790-mRNA-1:exon:8302;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22534966 | 22535034 | 22534966 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22535229 | 22535628 | 22535229 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22535749 | 22535873 | 22535749 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22536345 | 22536603 | 22536345 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22536713 | 22536799 | 22536713 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22537192 | 22537259 | 22537192 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| chr1_2 | CDS | 22537344 | 22537589 | 22537344 | ID=Msa0062790-mRNA-1:cds;Parent=Msa0062790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
