Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062810 | sp|Q8RYD1|REM16_ARATH | 23.746 | 299 | 191 | 6 | 2 | 274 | 39 | 326 | 3.04e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062810 | A0A396JU70 | 89.895 | 287 | 28 | 1 | 1 | 287 | 26 | 311 | 2.53e-172 | 490 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062810 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062810 | MtrunA17_Chr1g0163221 | 89.895 | 287 | 28 | 1 | 1 | 287 | 26 | 311 | 4.86e-176 | 490 |
| Msa0062810 | MtrunA17_Chr4g0067431 | 64.430 | 298 | 82 | 6 | 2 | 279 | 31 | 324 | 4.98e-128 | 367 |
| Msa0062810 | MtrunA17_Chr6g0467351 | 59.615 | 208 | 63 | 3 | 2 | 195 | 31 | 231 | 3.08e-81 | 244 |
| Msa0062810 | MtrunA17_Chr1g0163061 | 50.213 | 235 | 57 | 3 | 2 | 176 | 31 | 265 | 3.75e-55 | 179 |
| Msa0062810 | MtrunA17_Chr6g0467361 | 68.539 | 89 | 24 | 3 | 189 | 274 | 7 | 94 | 8.39e-31 | 111 |
| Msa0062810 | MtrunA17_Chr1g0163071 | 28.205 | 312 | 176 | 9 | 2 | 279 | 2 | 299 | 1.55e-28 | 111 |
| Msa0062810 | MtrunA17_Chr1g0208771 | 25.597 | 293 | 190 | 8 | 2 | 274 | 13 | 297 | 7.72e-27 | 108 |
| Msa0062810 | MtrunA17_Chr1g0163131 | 32.847 | 274 | 161 | 11 | 2 | 259 | 34 | 300 | 2.34e-26 | 105 |
| Msa0062810 | MtrunA17_Chr3g0103171 | 29.197 | 274 | 171 | 8 | 2 | 266 | 6 | 265 | 7.28e-26 | 103 |
| Msa0062810 | MtrunA17_Chr1g0163201 | 28.826 | 281 | 171 | 9 | 2 | 260 | 19 | 292 | 7.51e-26 | 105 |
| Msa0062810 | MtrunA17_Chr1g0163181 | 28.873 | 284 | 169 | 11 | 2 | 265 | 21 | 291 | 9.95e-26 | 105 |
| Msa0062810 | MtrunA17_Chr7g0233561 | 29.577 | 284 | 148 | 10 | 2 | 252 | 34 | 298 | 2.13e-25 | 103 |
| Msa0062810 | MtrunA17_Chr1g0163251 | 28.859 | 298 | 191 | 11 | 2 | 291 | 21 | 305 | 5.50e-25 | 103 |
| Msa0062810 | MtrunA17_Chr3g0131891 | 27.941 | 272 | 185 | 7 | 2 | 266 | 35 | 302 | 1.57e-24 | 100 |
| Msa0062810 | MtrunA17_Chr1g0163231 | 29.278 | 263 | 156 | 7 | 2 | 254 | 25 | 267 | 2.01e-24 | 100 |
| Msa0062810 | MtrunA17_Chr7g0233541 | 27.820 | 266 | 176 | 5 | 2 | 252 | 2 | 266 | 1.90e-23 | 97.4 |
| Msa0062810 | MtrunA17_Chr3g0103181 | 28.364 | 275 | 166 | 9 | 2 | 266 | 26 | 279 | 2.59e-23 | 96.7 |
| Msa0062810 | MtrunA17_Chr1g0163261 | 28.889 | 270 | 173 | 9 | 2 | 265 | 25 | 281 | 9.98e-23 | 95.5 |
| Msa0062810 | MtrunA17_Chr7g0233521 | 28.030 | 264 | 161 | 7 | 2 | 252 | 2 | 249 | 1.39e-22 | 94.7 |
| Msa0062810 | MtrunA17_Chr8g0390841 | 26.621 | 293 | 188 | 10 | 2 | 275 | 55 | 339 | 1.11e-21 | 94.7 |
| Msa0062810 | MtrunA17_Chr3g0103191 | 28.761 | 226 | 140 | 7 | 2 | 221 | 26 | 236 | 1.44e-21 | 91.3 |
| Msa0062810 | MtrunA17_Chr7g0233531 | 26.744 | 258 | 172 | 6 | 2 | 252 | 2 | 249 | 8.68e-21 | 89.7 |
| Msa0062810 | MtrunA17_Chr1g0171611 | 27.308 | 260 | 153 | 8 | 2 | 254 | 25 | 255 | 7.34e-19 | 84.7 |
| Msa0062810 | MtrunA17_Chr1g0163121 | 36.290 | 124 | 65 | 4 | 2 | 115 | 11 | 130 | 9.98e-19 | 80.9 |
| Msa0062810 | MtrunA17_Chr6g0476181 | 37.500 | 120 | 67 | 4 | 2 | 118 | 2 | 116 | 8.41e-18 | 79.0 |
| Msa0062810 | MtrunA17_Chr1g0154131 | 28.674 | 279 | 153 | 13 | 1 | 252 | 197 | 456 | 1.42e-17 | 82.4 |
| Msa0062810 | MtrunA17_Chr1g0154161 | 26.936 | 297 | 161 | 13 | 1 | 271 | 45 | 311 | 4.02e-16 | 77.4 |
| Msa0062810 | MtrunA17_Chr5g0429931 | 26.937 | 271 | 152 | 10 | 2 | 266 | 11 | 241 | 9.30e-16 | 75.1 |
| Msa0062810 | MtrunA17_Chr1g0162161 | 33.333 | 147 | 84 | 5 | 2 | 140 | 4 | 144 | 1.27e-15 | 72.8 |
| Msa0062810 | MtrunA17_Chr1g0163081 | 32.258 | 124 | 70 | 3 | 2 | 115 | 6 | 125 | 1.36e-15 | 72.4 |
| Msa0062810 | MtrunA17_Chr3g0077451 | 26.882 | 279 | 133 | 12 | 2 | 266 | 12 | 233 | 1.41e-15 | 74.7 |
| Msa0062810 | MtrunA17_Chr3g0103151 | 34.127 | 126 | 75 | 5 | 2 | 120 | 26 | 150 | 2.38e-15 | 72.0 |
| Msa0062810 | MtrunA17_Chr1g0163241 | 33.036 | 112 | 72 | 2 | 2 | 113 | 23 | 131 | 3.45e-15 | 72.0 |
| Msa0062810 | MtrunA17_Chr1g0154151 | 28.472 | 288 | 165 | 12 | 1 | 252 | 19 | 301 | 3.57e-15 | 74.7 |
| Msa0062810 | MtrunA17_Chr7g0233571 | 38.144 | 97 | 59 | 1 | 2 | 98 | 26 | 121 | 4.92e-15 | 72.8 |
| Msa0062810 | MtrunA17_Chr5g0419201 | 40.476 | 84 | 49 | 1 | 2 | 85 | 32 | 114 | 7.68e-15 | 71.6 |
| Msa0062810 | MtrunA17_Chr3g0103201 | 28.326 | 233 | 140 | 9 | 45 | 266 | 4 | 220 | 1.36e-14 | 71.2 |
| Msa0062810 | MtrunA17_Chr1g0154191 | 25.796 | 314 | 163 | 15 | 1 | 252 | 37 | 342 | 3.13e-14 | 72.0 |
| Msa0062810 | MtrunA17_Chr1g0163101 | 33.333 | 120 | 65 | 4 | 2 | 110 | 33 | 148 | 6.39e-14 | 68.6 |
| Msa0062810 | MtrunA17_Chr1g0163191 | 37.895 | 95 | 56 | 2 | 2 | 96 | 21 | 112 | 2.94e-13 | 66.2 |
| Msa0062810 | MtrunA17_Chr3g0077411 | 24.364 | 275 | 128 | 9 | 2 | 264 | 41 | 247 | 7.74e-13 | 68.6 |
| Msa0062810 | MtrunA17_Chr3g0077431 | 27.049 | 244 | 114 | 10 | 34 | 266 | 4 | 194 | 3.52e-12 | 64.3 |
| Msa0062810 | MtrunA17_Chr1g0163161 | 34.884 | 129 | 63 | 5 | 14 | 131 | 1 | 119 | 6.09e-12 | 62.0 |
| Msa0062810 | MtrunA17_Chr3g0077421 | 24.000 | 225 | 119 | 6 | 34 | 252 | 4 | 182 | 2.10e-11 | 62.0 |
| Msa0062810 | MtrunA17_Chr3g0077441 | 24.000 | 225 | 119 | 6 | 34 | 252 | 4 | 182 | 2.10e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062810 | AT4G33280.1 | 23.746 | 299 | 191 | 6 | 2 | 274 | 39 | 326 | 3.09e-14 | 72.4 |
| Msa0062810 | AT1G49475.1 | 36.842 | 95 | 58 | 2 | 2 | 96 | 50 | 142 | 6.52e-11 | 60.8 |
Find 35 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_2:-22549343 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_2:+22549428 | Msa0062810:CDS |
| ACTTGCAAATTATTTGTCTT+TGG | 0.202067 | 1_2:+22548463 | Msa0062810:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_2:-22548951 | None:intergenic |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1_2:-22548368 | None:intergenic |
| CTTCATCATCACGGGGTAAA+AGG | 0.262699 | 1_2:+22548639 | Msa0062810:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1_2:+22548527 | Msa0062810:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_2:+22548855 | Msa0062810:CDS |
| CTTGCAAATTATTTGTCTTT+GGG | 0.314706 | 1_2:+22548464 | Msa0062810:CDS |
| TATAATTTACCCTCAAAATA+AGG | 0.332196 | 1_2:-22549539 | None:intergenic |
| TTCTTACAAACTTCCATAGA+TGG | 0.339692 | 1_2:-22548677 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_2:+22548360 | Msa0062810:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_2:-22549424 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_2:-22549494 | None:intergenic |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_2:-22549287 | None:intergenic |
| TCTTCCCTAGTTTCTCTTGA+AGG | 0.414041 | 1_2:-22548575 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_2:+22549292 | Msa0062810:CDS |
| CTTCCCTAGTTTCTCTTGAA+GGG | 0.443910 | 1_2:-22548574 | None:intergenic |
| TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1_2:+22548376 | Msa0062810:CDS |
| TGAGAACCCTTCATCATCAC+GGG | 0.497990 | 1_2:+22548631 | Msa0062810:CDS |
| ATACCCTTCAAGAGAAACTA+GGG | 0.511985 | 1_2:+22548571 | Msa0062810:CDS |
| AATACCCTTCAAGAGAAACT+AGG | 0.512891 | 1_2:+22548570 | Msa0062810:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1_2:+22549558 | Msa0062810:CDS |
| TATATTAAATGAATTTCCGA+TGG | 0.539775 | 1_2:-22549574 | None:intergenic |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_2:+22548960 | Msa0062810:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_2:+22548335 | Msa0062810:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_2:+22549393 | Msa0062810:CDS |
| TTGAGAACCCTTCATCATCA+CGG | 0.579054 | 1_2:+22548630 | Msa0062810:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_2:+22549301 | Msa0062810:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_2:+22549389 | Msa0062810:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1_2:-22548367 | None:intergenic |
| GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1_2:+22548536 | Msa0062810:CDS |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_2:+22549305 | Msa0062810:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_2:+22548734 | Msa0062810:CDS |
| GAGAACCCTTCATCATCACG+GGG | 0.761785 | 1_2:+22548632 | Msa0062810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_2:22548809-22548828 | Msa0062810:intron | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_2:22548809-22548828 | Msa0062810:intron | 15.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_2:22548832-22548851 | Msa0062810:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_2:22549135-22549154 | Msa0062810:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_2:22549259-22549278 | Msa0062810:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_2:22549345-22549364 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_2:22549346-22549365 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_2:22549345-22549364 | Msa0062810:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_2:22549427-22549446 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_2:22549428-22549447 | Msa0062810:CDS | 20.0% |
| !! | TATAATTTACCCTCAAAATA+AGG | - | chr1_2:22549542-22549561 | None:intergenic | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_2:22548832-22548851 | Msa0062810:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_2:22549135-22549154 | Msa0062810:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_2:22549259-22549278 | Msa0062810:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_2:22549345-22549364 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_2:22549346-22549365 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_2:22549345-22549364 | Msa0062810:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_2:22549427-22549446 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_2:22549428-22549447 | Msa0062810:CDS | 20.0% |
| !! | TATAATTTACCCTCAAAATA+AGG | - | chr1_2:22549542-22549561 | None:intergenic | 20.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_2:22548329-22548348 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_2:22548330-22548349 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_2:22548330-22548349 | Msa0062810:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_2:22548393-22548412 | Msa0062810:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_2:22548394-22548413 | Msa0062810:CDS | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | + | chr1_2:22548431-22548450 | Msa0062810:CDS | 25.0% |
| ! | ACTTGCAAATTATTTGTCTT+TGG | + | chr1_2:22548463-22548482 | Msa0062810:CDS | 25.0% |
| ! | CTTGCAAATTATTTGTCTTT+GGG | + | chr1_2:22548464-22548483 | Msa0062810:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | + | chr1_2:22548527-22548546 | Msa0062810:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_2:22548855-22548874 | Msa0062810:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_2:22549088-22549107 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_2:22549085-22549104 | Msa0062810:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_2:22549101-22549120 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_2:22549290-22549309 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_2:22549292-22549311 | Msa0062810:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_2:22549497-22549516 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_2:22549499-22549518 | Msa0062810:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_2:22549505-22549524 | Msa0062810:CDS | 25.0% |
| !!! | ATGAAAACTCCTTATTTTGA+GGG | + | chr1_2:22549530-22549549 | Msa0062810:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_2:22549558-22549577 | Msa0062810:CDS | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_2:22548329-22548348 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_2:22548330-22548349 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_2:22548330-22548349 | Msa0062810:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_2:22548393-22548412 | Msa0062810:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_2:22548394-22548413 | Msa0062810:CDS | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | + | chr1_2:22548431-22548450 | Msa0062810:CDS | 25.0% |
| ! | ACTTGCAAATTATTTGTCTT+TGG | + | chr1_2:22548463-22548482 | Msa0062810:CDS | 25.0% |
| ! | CTTGCAAATTATTTGTCTTT+GGG | + | chr1_2:22548464-22548483 | Msa0062810:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | + | chr1_2:22548527-22548546 | Msa0062810:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_2:22548855-22548874 | Msa0062810:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_2:22549088-22549107 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_2:22549085-22549104 | Msa0062810:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_2:22549101-22549120 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_2:22549290-22549309 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_2:22549292-22549311 | Msa0062810:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_2:22549497-22549516 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_2:22549499-22549518 | Msa0062810:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_2:22549505-22549524 | Msa0062810:CDS | 25.0% |
| !!! | ATGAAAACTCCTTATTTTGA+GGG | + | chr1_2:22549530-22549549 | Msa0062810:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_2:22549558-22549577 | Msa0062810:CDS | 25.0% |
| ! | TACCCATAACTTTTGTGAAA+AGG | + | chr1_2:22548324-22548343 | Msa0062810:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_2:22548335-22548354 | Msa0062810:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_2:22548389-22548408 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_2:22548435-22548454 | Msa0062810:CDS | 30.0% |
| ! | TTTGGGTGAATCACAATTTT+TGG | + | chr1_2:22548481-22548500 | Msa0062810:CDS | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_2:22548664-22548683 | Msa0062810:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_2:22548680-22548699 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_2:22548900-22548919 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_2:22548909-22548928 | Msa0062810:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_2:22548954-22548973 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_2:22549458-22549477 | Msa0062810:CDS | 30.0% |
| !!! | CATGAAAACTCCTTATTTTG+AGG | + | chr1_2:22549529-22549548 | Msa0062810:CDS | 30.0% |
| ! | TACCCATAACTTTTGTGAAA+AGG | + | chr1_2:22548324-22548343 | Msa0062810:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_2:22548335-22548354 | Msa0062810:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_2:22548389-22548408 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_2:22548435-22548454 | Msa0062810:CDS | 30.0% |
| ! | TTTGGGTGAATCACAATTTT+TGG | + | chr1_2:22548481-22548500 | Msa0062810:CDS | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_2:22548664-22548683 | Msa0062810:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_2:22548680-22548699 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_2:22548900-22548919 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_2:22548909-22548928 | Msa0062810:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_2:22548954-22548973 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_2:22549458-22549477 | Msa0062810:CDS | 30.0% |
| !!! | CATGAAAACTCCTTATTTTG+AGG | + | chr1_2:22549529-22549548 | Msa0062810:CDS | 30.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_2:22548360-22548379 | Msa0062810:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_2:22548370-22548389 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_2:22548371-22548390 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_2:22548376-22548395 | Msa0062810:CDS | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | + | chr1_2:22548536-22548555 | Msa0062810:CDS | 35.0% | |
| AATACCCTTCAAGAGAAACT+AGG | + | chr1_2:22548570-22548589 | Msa0062810:CDS | 35.0% | |
| ATACCCTTCAAGAGAAACTA+GGG | + | chr1_2:22548571-22548590 | Msa0062810:CDS | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_2:22548960-22548979 | Msa0062810:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_2:22549149-22549168 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_2:22549146-22549165 | Msa0062810:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_2:22549301-22549320 | Msa0062810:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_2:22549389-22549408 | Msa0062810:CDS | 35.0% | |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_2:22548360-22548379 | Msa0062810:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_2:22548370-22548389 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_2:22548371-22548390 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_2:22548376-22548395 | Msa0062810:CDS | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | + | chr1_2:22548536-22548555 | Msa0062810:CDS | 35.0% | |
| AATACCCTTCAAGAGAAACT+AGG | + | chr1_2:22548570-22548589 | Msa0062810:CDS | 35.0% | |
| ATACCCTTCAAGAGAAACTA+GGG | + | chr1_2:22548571-22548590 | Msa0062810:CDS | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_2:22548960-22548979 | Msa0062810:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_2:22549149-22549168 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_2:22549146-22549165 | Msa0062810:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_2:22549301-22549320 | Msa0062810:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_2:22549389-22549408 | Msa0062810:CDS | 35.0% | |
| CTTCCCTAGTTTCTCTTGAA+GGG | - | chr1_2:22548577-22548596 | None:intergenic | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+AGG | - | chr1_2:22548578-22548597 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_2:22548630-22548649 | Msa0062810:CDS | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | - | chr1_2:22548640-22548659 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_2:22549305-22549324 | Msa0062810:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_2:22549393-22549412 | Msa0062810:CDS | 40.0% |
| CTTCCCTAGTTTCTCTTGAA+GGG | - | chr1_2:22548577-22548596 | None:intergenic | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+AGG | - | chr1_2:22548578-22548597 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_2:22548630-22548649 | Msa0062810:CDS | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | - | chr1_2:22548640-22548659 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_2:22549305-22549324 | Msa0062810:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_2:22549393-22549412 | Msa0062810:CDS | 40.0% |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_2:22548631-22548650 | Msa0062810:CDS | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | - | chr1_2:22548641-22548660 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | + | chr1_2:22548639-22548658 | Msa0062810:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_2:22548734-22548753 | Msa0062810:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_2:22548738-22548757 | Msa0062810:intron | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_2:22548631-22548650 | Msa0062810:CDS | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | - | chr1_2:22548641-22548660 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | + | chr1_2:22548639-22548658 | Msa0062810:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_2:22548734-22548753 | Msa0062810:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_2:22548738-22548757 | Msa0062810:intron | 45.0% | |
| GAGAACCCTTCATCATCACG+GGG | + | chr1_2:22548632-22548651 | Msa0062810:CDS | 50.0% | |
| GAGAACCCTTCATCATCACG+GGG | + | chr1_2:22548632-22548651 | Msa0062810:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22548320 | 22549592 | 22548320 | ID=Msa0062810;Name=Msa0062810 |
| chr1_2 | mRNA | 22548320 | 22549592 | 22548320 | ID=Msa0062810-mRNA-1;Parent=Msa0062810;Name=Msa0062810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|291 |
| chr1_2 | exon | 22548320 | 22548755 | 22548320 | ID=Msa0062810-mRNA-1:exon:8303;Parent=Msa0062810-mRNA-1 |
| chr1_2 | exon | 22548854 | 22548981 | 22548854 | ID=Msa0062810-mRNA-1:exon:8304;Parent=Msa0062810-mRNA-1 |
| chr1_2 | exon | 22549281 | 22549592 | 22549281 | ID=Msa0062810-mRNA-1:exon:8305;Parent=Msa0062810-mRNA-1 |
| chr1_2 | CDS | 22548320 | 22548755 | 22548320 | ID=Msa0062810-mRNA-1:cds;Parent=Msa0062810-mRNA-1 |
| chr1_2 | CDS | 22548854 | 22548981 | 22548854 | ID=Msa0062810-mRNA-1:cds;Parent=Msa0062810-mRNA-1 |
| chr1_2 | CDS | 22549281 | 22549592 | 22549281 | ID=Msa0062810-mRNA-1:cds;Parent=Msa0062810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
