Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062820 | sp|Q84R27|Y3896_ARATH | 36.634 | 101 | 63 | 1 | 15 | 115 | 30 | 129 | 5.66e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062820 | A0A396JU70 | 81.525 | 341 | 25 | 3 | 1 | 341 | 1 | 303 | 1.28e-176 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062820 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062820 | MtrunA17_Chr1g0163221 | 81.525 | 341 | 25 | 3 | 1 | 341 | 1 | 303 | 2.47e-180 | 503 |
| Msa0062820 | MtrunA17_Chr4g0067431 | 60.571 | 350 | 103 | 7 | 1 | 341 | 1 | 324 | 1.36e-135 | 388 |
| Msa0062820 | MtrunA17_Chr6g0467351 | 55.253 | 257 | 89 | 3 | 1 | 257 | 1 | 231 | 3.89e-90 | 269 |
| Msa0062820 | MtrunA17_Chr1g0163061 | 55.970 | 268 | 85 | 5 | 1 | 238 | 1 | 265 | 2.32e-81 | 248 |
| Msa0062820 | MtrunA17_Chr6g0467361 | 67.416 | 89 | 25 | 3 | 251 | 336 | 7 | 94 | 1.88e-30 | 111 |
| Msa0062820 | MtrunA17_Chr1g0163131 | 29.326 | 341 | 180 | 15 | 1 | 321 | 1 | 300 | 8.14e-28 | 110 |
| Msa0062820 | MtrunA17_Chr1g0163071 | 26.791 | 321 | 202 | 8 | 31 | 341 | 2 | 299 | 1.17e-24 | 102 |
| Msa0062820 | MtrunA17_Chr3g0131891 | 25.688 | 327 | 199 | 8 | 9 | 328 | 13 | 302 | 2.15e-24 | 101 |
| Msa0062820 | MtrunA17_Chr3g0103181 | 25.904 | 332 | 180 | 10 | 7 | 328 | 4 | 279 | 1.65e-23 | 98.2 |
| Msa0062820 | MtrunA17_Chr7g0233561 | 28.296 | 311 | 186 | 10 | 13 | 314 | 16 | 298 | 7.66e-23 | 97.4 |
| Msa0062820 | MtrunA17_Chr1g0163181 | 27.157 | 313 | 184 | 11 | 24 | 327 | 14 | 291 | 1.57e-22 | 97.8 |
| Msa0062820 | MtrunA17_Chr1g0208771 | 23.988 | 321 | 205 | 10 | 31 | 341 | 13 | 304 | 2.36e-22 | 97.4 |
| Msa0062820 | MtrunA17_Chr1g0163261 | 26.183 | 317 | 186 | 9 | 15 | 327 | 9 | 281 | 1.54e-21 | 93.2 |
| Msa0062820 | MtrunA17_Chr3g0103151 | 36.111 | 144 | 82 | 6 | 13 | 149 | 10 | 150 | 1.23e-20 | 87.4 |
| Msa0062820 | MtrunA17_Chr3g0103171 | 25.733 | 307 | 172 | 8 | 31 | 328 | 6 | 265 | 1.56e-20 | 89.7 |
| Msa0062820 | MtrunA17_Chr1g0163101 | 37.500 | 128 | 74 | 4 | 1 | 126 | 1 | 124 | 1.61e-20 | 87.8 |
| Msa0062820 | MtrunA17_Chr8g0390841 | 22.961 | 331 | 221 | 9 | 13 | 337 | 37 | 339 | 3.60e-20 | 91.3 |
| Msa0062820 | MtrunA17_Chr1g0163231 | 25.641 | 312 | 169 | 8 | 15 | 316 | 9 | 267 | 4.14e-20 | 89.0 |
| Msa0062820 | MtrunA17_Chr1g0163251 | 26.623 | 308 | 179 | 11 | 24 | 327 | 14 | 278 | 4.17e-20 | 90.5 |
| Msa0062820 | MtrunA17_Chr3g0103191 | 25.632 | 277 | 150 | 9 | 13 | 283 | 10 | 236 | 1.54e-19 | 86.7 |
| Msa0062820 | MtrunA17_Chr7g0233571 | 37.391 | 115 | 71 | 1 | 13 | 127 | 8 | 121 | 1.56e-19 | 85.9 |
| Msa0062820 | MtrunA17_Chr7g0233521 | 26.207 | 290 | 166 | 8 | 31 | 314 | 2 | 249 | 9.34e-19 | 85.1 |
| Msa0062820 | MtrunA17_Chr5g0419201 | 34.066 | 182 | 96 | 7 | 1 | 159 | 1 | 181 | 4.10e-18 | 81.3 |
| Msa0062820 | MtrunA17_Chr1g0163121 | 35.714 | 126 | 67 | 4 | 29 | 144 | 9 | 130 | 1.18e-17 | 78.6 |
| Msa0062820 | MtrunA17_Chr7g0233541 | 25.685 | 292 | 182 | 7 | 31 | 314 | 2 | 266 | 4.77e-17 | 80.5 |
| Msa0062820 | MtrunA17_Chr6g0476181 | 36.667 | 120 | 68 | 4 | 31 | 147 | 2 | 116 | 2.48e-16 | 75.5 |
| Msa0062820 | MtrunA17_Chr1g0163081 | 32.258 | 124 | 70 | 3 | 31 | 144 | 6 | 125 | 5.85e-15 | 71.2 |
| Msa0062820 | MtrunA17_Chr1g0163191 | 38.235 | 102 | 60 | 2 | 24 | 125 | 14 | 112 | 7.41e-15 | 71.2 |
| Msa0062820 | MtrunA17_Chr1g0162161 | 32.653 | 147 | 85 | 5 | 31 | 169 | 4 | 144 | 3.14e-14 | 69.7 |
| Msa0062820 | MtrunA17_Chr1g0171611 | 34.884 | 129 | 80 | 3 | 15 | 143 | 9 | 133 | 3.53e-14 | 72.0 |
| Msa0062820 | MtrunA17_Chr1g0163201 | 22.703 | 370 | 191 | 10 | 31 | 314 | 19 | 379 | 3.62e-14 | 73.2 |
| Msa0062820 | MtrunA17_Chr1g0163241 | 32.143 | 112 | 73 | 2 | 31 | 142 | 23 | 131 | 4.17e-14 | 69.3 |
| Msa0062820 | MtrunA17_Chr1g0154161 | 23.171 | 328 | 166 | 12 | 13 | 314 | 28 | 295 | 1.48e-13 | 70.5 |
| Msa0062820 | MtrunA17_Chr3g0077461 | 30.818 | 159 | 98 | 3 | 14 | 161 | 236 | 393 | 3.01e-13 | 70.5 |
| Msa0062820 | MtrunA17_Chr3g0077411 | 27.660 | 141 | 89 | 3 | 2 | 139 | 12 | 142 | 1.01e-12 | 68.9 |
| Msa0062820 | MtrunA17_Chr3g0077411 | 32.143 | 140 | 85 | 4 | 13 | 145 | 260 | 396 | 7.01e-11 | 63.2 |
| Msa0062820 | MtrunA17_Chr3g0077451 | 28.873 | 142 | 84 | 4 | 29 | 157 | 10 | 147 | 7.58e-12 | 64.7 |
| Msa0062820 | MtrunA17_Chr5g0429931 | 31.818 | 154 | 96 | 5 | 31 | 182 | 11 | 157 | 1.24e-11 | 63.9 |
| Msa0062820 | MtrunA17_Chr1g0163141 | 32.673 | 101 | 64 | 2 | 29 | 129 | 9 | 105 | 2.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062820 | AT3G18960.2 | 36.634 | 101 | 63 | 1 | 15 | 115 | 30 | 129 | 5.31e-15 | 73.2 |
| Msa0062820 | AT3G18960.1 | 36.634 | 101 | 63 | 1 | 15 | 115 | 30 | 129 | 5.75e-15 | 73.2 |
| Msa0062820 | AT4G01580.1 | 34.653 | 101 | 65 | 1 | 15 | 115 | 30 | 129 | 8.38e-14 | 69.7 |
| Msa0062820 | AT1G49475.1 | 35.135 | 111 | 70 | 2 | 15 | 125 | 34 | 142 | 5.10e-13 | 67.4 |
| Msa0062820 | AT3G18960.3 | 37.647 | 85 | 52 | 1 | 31 | 115 | 9 | 92 | 2.56e-11 | 62.0 |
Find 36 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_2:-22562970 | None:intergenic |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_2:-22562578 | None:intergenic |
| GAAGAGAATAGTTTGAAATT+TGG | 0.246820 | 1_2:+22563055 | Msa0062820:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1_2:-22561994 | None:intergenic |
| CTTCATCATCACGGGGTAAA+AGG | 0.262699 | 1_2:+22562265 | Msa0062820:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_2:+22562482 | Msa0062820:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 1_2:+22562153 | Msa0062820:CDS |
| TTCTTACAAACTTCCATAGA+TGG | 0.339692 | 1_2:-22562303 | None:intergenic |
| ATATAATTACCTTCAAAATA+AGG | 0.343429 | 1_2:-22563166 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_2:+22561986 | Msa0062820:CDS |
| ATTTCAAACTATTCTCTTCA+CGG | 0.384634 | 1_2:-22563051 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_2:-22563121 | None:intergenic |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_2:-22562914 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_2:-22562200 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_2:+22562919 | Msa0062820:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_2:-22562201 | None:intergenic |
| TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1_2:+22562002 | Msa0062820:CDS |
| TGAGAACCCTTCATCATCAC+GGG | 0.497990 | 1_2:+22562257 | Msa0062820:CDS |
| TTTCTCTTTGGAAAAGGACA+TGG | 0.524275 | 1_2:+22563138 | Msa0062820:CDS |
| AATTTGCACTAACTTGTGGT+TGG | 0.524909 | 1_2:+22563020 | Msa0062820:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_2:+22562196 | Msa0062820:CDS |
| AAACAATTTGCACTAACTTG+TGG | 0.538804 | 1_2:+22563016 | Msa0062820:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_2:+22562587 | Msa0062820:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_2:+22561961 | Msa0062820:CDS |
| TTGAGAACCCTTCATCATCA+CGG | 0.579054 | 1_2:+22562256 | Msa0062820:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_2:+22562197 | Msa0062820:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_2:+22562928 | Msa0062820:CDS |
| GAACATGGTCATCAGAGTAA+TGG | 0.594006 | 1_2:+22561467 | Msa0062820:CDS |
| ACCATGTTCTTGAGAAGACA+TGG | 0.602247 | 1_2:-22561453 | None:intergenic |
| GTGATTGTATTCGGTAGATG+CGG | 0.604317 | 1_2:+22562162 | Msa0062820:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1_2:-22561993 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_2:+22562932 | Msa0062820:CDS |
| GTGAGCATGTGAACAATGGT+TGG | 0.639117 | 1_2:+22562364 | Msa0062820:CDS |
| ACCATGTCTTCTCAAGAACA+TGG | 0.657917 | 1_2:+22561452 | None:intergenic |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_2:+22562360 | Msa0062820:CDS |
| GAGAACCCTTCATCATCACG+GGG | 0.761785 | 1_2:+22562258 | Msa0062820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_2:22563201-22563220 | Msa0062820:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_2:22563201-22563220 | Msa0062820:intron | 10.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_2:22562435-22562454 | Msa0062820:CDS | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_2:22563169-22563188 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_2:22562435-22562454 | Msa0062820:CDS | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_2:22563169-22563188 | None:intergenic | 15.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | - | chr1_2:22561688-22561707 | None:intergenic | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | - | chr1_2:22561689-22561708 | None:intergenic | 20.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | + | chr1_2:22561736-22561755 | Msa0062820:intron | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | + | chr1_2:22561780-22561799 | Msa0062820:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_2:22562107-22562126 | Msa0062820:CDS | 20.0% |
| !!! | GAATTCTTATTTTTTTTAGC+AGG | + | chr1_2:22562459-22562478 | Msa0062820:CDS | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_2:22562762-22562781 | Msa0062820:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_2:22562886-22562905 | Msa0062820:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_2:22562972-22562991 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_2:22562973-22562992 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_2:22562972-22562991 | Msa0062820:CDS | 20.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | - | chr1_2:22561688-22561707 | None:intergenic | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | - | chr1_2:22561689-22561708 | None:intergenic | 20.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | + | chr1_2:22561736-22561755 | Msa0062820:intron | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | + | chr1_2:22561780-22561799 | Msa0062820:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_2:22562107-22562126 | Msa0062820:CDS | 20.0% |
| !!! | GAATTCTTATTTTTTTTAGC+AGG | + | chr1_2:22562459-22562478 | Msa0062820:CDS | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_2:22562762-22562781 | Msa0062820:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_2:22562886-22562905 | Msa0062820:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_2:22562972-22562991 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_2:22562973-22562992 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_2:22562972-22562991 | Msa0062820:CDS | 20.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | - | chr1_2:22561567-22561586 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | - | chr1_2:22561568-22561587 | None:intergenic | 25.0% |
| ! | CAAATATGCATTGCAAAATT+TGG | + | chr1_2:22561585-22561604 | Msa0062820:intron | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_2:22561955-22561974 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_2:22561956-22561975 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_2:22561956-22561975 | Msa0062820:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_2:22562019-22562038 | Msa0062820:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_2:22562020-22562039 | Msa0062820:CDS | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | + | chr1_2:22562057-22562076 | Msa0062820:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_2:22562153-22562172 | Msa0062820:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_2:22562482-22562501 | Msa0062820:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_2:22562715-22562734 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_2:22562712-22562731 | Msa0062820:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_2:22562728-22562747 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_2:22562917-22562936 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_2:22562919-22562938 | Msa0062820:CDS | 25.0% |
| ! | ATTTCAAACTATTCTCTTCA+CGG | - | chr1_2:22563054-22563073 | None:intergenic | 25.0% |
| !! | GAAGAGAATAGTTTGAAATT+TGG | + | chr1_2:22563055-22563074 | Msa0062820:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_2:22563124-22563143 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_2:22563126-22563145 | Msa0062820:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_2:22563132-22563151 | Msa0062820:CDS | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_2:22563245-22563264 | Msa0062820:intron | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | - | chr1_2:22561567-22561586 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | - | chr1_2:22561568-22561587 | None:intergenic | 25.0% |
| ! | CAAATATGCATTGCAAAATT+TGG | + | chr1_2:22561585-22561604 | Msa0062820:intron | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_2:22561955-22561974 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_2:22561956-22561975 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_2:22561956-22561975 | Msa0062820:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_2:22562019-22562038 | Msa0062820:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_2:22562020-22562039 | Msa0062820:CDS | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | + | chr1_2:22562057-22562076 | Msa0062820:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_2:22562153-22562172 | Msa0062820:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_2:22562482-22562501 | Msa0062820:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_2:22562715-22562734 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_2:22562712-22562731 | Msa0062820:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_2:22562728-22562747 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_2:22562917-22562936 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_2:22562919-22562938 | Msa0062820:CDS | 25.0% |
| ! | ATTTCAAACTATTCTCTTCA+CGG | - | chr1_2:22563054-22563073 | None:intergenic | 25.0% |
| !! | GAAGAGAATAGTTTGAAATT+TGG | + | chr1_2:22563055-22563074 | Msa0062820:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_2:22563124-22563143 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_2:22563126-22563145 | Msa0062820:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_2:22563132-22563151 | Msa0062820:CDS | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_2:22563245-22563264 | Msa0062820:intron | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_2:22561484-22561503 | Msa0062820:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_2:22561496-22561515 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_2:22561525-22561544 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_2:22561526-22561545 | None:intergenic | 30.0% |
| AGTGATTGTTCAAATATAGG+TGG | + | chr1_2:22561783-22561802 | Msa0062820:intron | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_2:22561961-22561980 | Msa0062820:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_2:22562015-22562034 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_2:22562061-22562080 | Msa0062820:CDS | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_2:22562290-22562309 | Msa0062820:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_2:22562306-22562325 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_2:22562527-22562546 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_2:22562536-22562555 | Msa0062820:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_2:22562581-22562600 | None:intergenic | 30.0% |
| AAACAATTTGCACTAACTTG+TGG | + | chr1_2:22563016-22563035 | Msa0062820:CDS | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_2:22563085-22563104 | Msa0062820:CDS | 30.0% |
| !!! | ATGGAAACTCCTTATTTTGA+AGG | + | chr1_2:22563157-22563176 | Msa0062820:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_2:22561484-22561503 | Msa0062820:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_2:22561496-22561515 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_2:22561525-22561544 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_2:22561526-22561545 | None:intergenic | 30.0% |
| AGTGATTGTTCAAATATAGG+TGG | + | chr1_2:22561783-22561802 | Msa0062820:intron | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_2:22561961-22561980 | Msa0062820:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_2:22562015-22562034 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_2:22562061-22562080 | Msa0062820:CDS | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_2:22562290-22562309 | Msa0062820:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_2:22562306-22562325 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_2:22562527-22562546 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_2:22562536-22562555 | Msa0062820:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_2:22562581-22562600 | None:intergenic | 30.0% |
| AAACAATTTGCACTAACTTG+TGG | + | chr1_2:22563016-22563035 | Msa0062820:CDS | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_2:22563085-22563104 | Msa0062820:CDS | 30.0% |
| !!! | ATGGAAACTCCTTATTTTGA+AGG | + | chr1_2:22563157-22563176 | Msa0062820:CDS | 30.0% |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_2:22561520-22561539 | Msa0062820:CDS | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_2:22561950-22561969 | Msa0062820:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_2:22561986-22562005 | Msa0062820:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_2:22561996-22562015 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_2:22561997-22562016 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_2:22562002-22562021 | Msa0062820:CDS | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_2:22562587-22562606 | Msa0062820:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_2:22562776-22562795 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_2:22562773-22562792 | Msa0062820:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_2:22562928-22562947 | Msa0062820:CDS | 35.0% | |
| ! | AATTTGCACTAACTTGTGGT+TGG | + | chr1_2:22563020-22563039 | Msa0062820:CDS | 35.0% |
| ! | TTTCTCTTTGGAAAAGGACA+TGG | + | chr1_2:22563138-22563157 | Msa0062820:CDS | 35.0% |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_2:22561520-22561539 | Msa0062820:CDS | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_2:22561950-22561969 | Msa0062820:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_2:22561986-22562005 | Msa0062820:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_2:22561996-22562015 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_2:22561997-22562016 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_2:22562002-22562021 | Msa0062820:CDS | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_2:22562587-22562606 | Msa0062820:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_2:22562776-22562795 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_2:22562773-22562792 | Msa0062820:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_2:22562928-22562947 | Msa0062820:CDS | 35.0% | |
| ! | AATTTGCACTAACTTGTGGT+TGG | + | chr1_2:22563020-22563039 | Msa0062820:CDS | 35.0% |
| ! | TTTCTCTTTGGAAAAGGACA+TGG | + | chr1_2:22563138-22563157 | Msa0062820:CDS | 35.0% |
| GAACATGGTCATCAGAGTAA+TGG | + | chr1_2:22561467-22561486 | Msa0062820:CDS | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_2:22562162-22562181 | Msa0062820:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_2:22562196-22562215 | Msa0062820:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_2:22562197-22562216 | Msa0062820:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_2:22562204-22562223 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_2:22562256-22562275 | Msa0062820:CDS | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | - | chr1_2:22562266-22562285 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_2:22562932-22562951 | Msa0062820:CDS | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | + | chr1_2:22563256-22563275 | Msa0062820:intron | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | + | chr1_2:22563257-22563276 | Msa0062820:intron | 40.0% | |
| GAACATGGTCATCAGAGTAA+TGG | + | chr1_2:22561467-22561486 | Msa0062820:CDS | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_2:22562162-22562181 | Msa0062820:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_2:22562196-22562215 | Msa0062820:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_2:22562197-22562216 | Msa0062820:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_2:22562204-22562223 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_2:22562256-22562275 | Msa0062820:CDS | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | - | chr1_2:22562266-22562285 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_2:22562932-22562951 | Msa0062820:CDS | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | + | chr1_2:22563256-22563275 | Msa0062820:intron | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | + | chr1_2:22563257-22563276 | Msa0062820:intron | 40.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1_2:22561662-22561681 | None:intergenic | 45.0% |
| ATTAGGGCTGCATCCAACAA+AGG | - | chr1_2:22561672-22561691 | None:intergenic | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_2:22562203-22562222 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_2:22562257-22562276 | Msa0062820:CDS | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | - | chr1_2:22562267-22562286 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | + | chr1_2:22562265-22562284 | Msa0062820:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_2:22562360-22562379 | Msa0062820:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_2:22562364-22562383 | Msa0062820:CDS | 45.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1_2:22561662-22561681 | None:intergenic | 45.0% |
| ATTAGGGCTGCATCCAACAA+AGG | - | chr1_2:22561672-22561691 | None:intergenic | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_2:22562203-22562222 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_2:22562257-22562276 | Msa0062820:CDS | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | - | chr1_2:22562267-22562286 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | + | chr1_2:22562265-22562284 | Msa0062820:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_2:22562360-22562379 | Msa0062820:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_2:22562364-22562383 | Msa0062820:CDS | 45.0% | |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1_2:22561656-22561675 | Msa0062820:intron | 50.0% |
| ! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1_2:22561663-22561682 | None:intergenic | 50.0% |
| GAGAACCCTTCATCATCACG+GGG | + | chr1_2:22562258-22562277 | Msa0062820:CDS | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | + | chr1_2:22563261-22563280 | Msa0062820:intron | 50.0% | |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1_2:22561656-22561675 | Msa0062820:intron | 50.0% |
| ! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1_2:22561663-22561682 | None:intergenic | 50.0% |
| GAGAACCCTTCATCATCACG+GGG | + | chr1_2:22562258-22562277 | Msa0062820:CDS | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | + | chr1_2:22563261-22563280 | Msa0062820:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 22561455 | 22563288 | 22561455 | ID=Msa0062820;Name=Msa0062820 |
| chr1_2 | mRNA | 22561455 | 22563288 | 22561455 | ID=Msa0062820-mRNA-1;Parent=Msa0062820;Name=Msa0062820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.5|1|0.75|4|0|343 |
| chr1_2 | exon | 22561455 | 22561541 | 22561455 | ID=Msa0062820-mRNA-1:exon:8281;Parent=Msa0062820-mRNA-1 |
| chr1_2 | exon | 22561946 | 22562608 | 22561946 | ID=Msa0062820-mRNA-1:exon:8282;Parent=Msa0062820-mRNA-1 |
| chr1_2 | exon | 22562908 | 22563178 | 22562908 | ID=Msa0062820-mRNA-1:exon:8283;Parent=Msa0062820-mRNA-1 |
| chr1_2 | exon | 22563278 | 22563288 | 22563278 | ID=Msa0062820-mRNA-1:exon:8284;Parent=Msa0062820-mRNA-1 |
| chr1_2 | CDS | 22561455 | 22561541 | 22561455 | ID=Msa0062820-mRNA-1:cds;Parent=Msa0062820-mRNA-1 |
| chr1_2 | CDS | 22561946 | 22562608 | 22561946 | ID=Msa0062820-mRNA-1:cds;Parent=Msa0062820-mRNA-1 |
| chr1_2 | CDS | 22562908 | 22563178 | 22562908 | ID=Msa0062820-mRNA-1:cds;Parent=Msa0062820-mRNA-1 |
| chr1_2 | CDS | 22563278 | 22563288 | 22563278 | ID=Msa0062820-mRNA-1:cds;Parent=Msa0062820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
