Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063070 | XP_024636868.1 | 74.497 | 298 | 73 | 1 | 1 | 298 | 1 | 295 | 1.96e-162 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063070 | sp|Q8L3W1|VRN1_ARATH | 24.096 | 332 | 207 | 11 | 15 | 308 | 6 | 330 | 1.17e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063070 | A0A396IHE6 | 74.497 | 298 | 73 | 1 | 1 | 298 | 1 | 295 | 9.37e-163 | 466 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0063070 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063070 | MtrunA17_Chr4g0067431 | 74.497 | 298 | 73 | 1 | 1 | 298 | 1 | 295 | 1.80e-166 | 466 |
| Msa0063070 | MtrunA17_Chr1g0163061 | 74.340 | 265 | 25 | 1 | 1 | 222 | 1 | 265 | 1.27e-115 | 335 |
| Msa0063070 | MtrunA17_Chr1g0163221 | 60.000 | 300 | 94 | 6 | 1 | 299 | 1 | 275 | 9.04e-106 | 313 |
| Msa0063070 | MtrunA17_Chr6g0467351 | 63.248 | 234 | 77 | 1 | 1 | 234 | 1 | 225 | 2.48e-103 | 302 |
| Msa0063070 | MtrunA17_Chr8g0390841 | 29.358 | 327 | 190 | 11 | 13 | 323 | 37 | 338 | 3.09e-29 | 117 |
| Msa0063070 | MtrunA17_Chr3g0131891 | 30.132 | 302 | 186 | 9 | 9 | 305 | 13 | 294 | 1.50e-27 | 109 |
| Msa0063070 | MtrunA17_Chr7g0233561 | 29.836 | 305 | 167 | 9 | 13 | 296 | 16 | 294 | 3.36e-27 | 108 |
| Msa0063070 | MtrunA17_Chr3g0103181 | 28.522 | 291 | 167 | 11 | 13 | 298 | 10 | 264 | 4.46e-26 | 104 |
| Msa0063070 | MtrunA17_Chr1g0163071 | 27.972 | 286 | 172 | 9 | 31 | 298 | 2 | 271 | 6.41e-26 | 105 |
| Msa0063070 | MtrunA17_Chr3g0103151 | 38.065 | 155 | 91 | 4 | 13 | 165 | 10 | 161 | 7.66e-26 | 100 |
| Msa0063070 | MtrunA17_Chr1g0208771 | 25.413 | 303 | 201 | 10 | 30 | 323 | 12 | 298 | 1.31e-25 | 106 |
| Msa0063070 | MtrunA17_Chr1g0163251 | 28.169 | 284 | 172 | 9 | 15 | 296 | 9 | 262 | 6.65e-25 | 103 |
| Msa0063070 | MtrunA17_Chr1g0163261 | 28.975 | 283 | 174 | 8 | 15 | 296 | 9 | 265 | 2.23e-24 | 100 |
| Msa0063070 | MtrunA17_Chr1g0163131 | 29.592 | 294 | 183 | 11 | 12 | 298 | 15 | 291 | 2.18e-23 | 98.2 |
| Msa0063070 | MtrunA17_Chr1g0163181 | 26.241 | 282 | 179 | 8 | 24 | 296 | 14 | 275 | 4.11e-22 | 96.3 |
| Msa0063070 | MtrunA17_Chr3g0103191 | 29.457 | 258 | 150 | 9 | 10 | 265 | 7 | 234 | 3.32e-21 | 90.9 |
| Msa0063070 | MtrunA17_Chr6g0467361 | 58.730 | 63 | 26 | 0 | 236 | 298 | 8 | 70 | 5.89e-21 | 85.9 |
| Msa0063070 | MtrunA17_Chr1g0163201 | 26.071 | 280 | 187 | 8 | 30 | 308 | 18 | 278 | 3.07e-20 | 90.5 |
| Msa0063070 | MtrunA17_Chr7g0233571 | 43.689 | 103 | 57 | 1 | 13 | 115 | 8 | 109 | 8.51e-20 | 86.3 |
| Msa0063070 | MtrunA17_Chr5g0419201 | 32.192 | 146 | 90 | 2 | 15 | 152 | 16 | 160 | 3.74e-18 | 81.3 |
| Msa0063070 | MtrunA17_Chr1g0163101 | 34.783 | 138 | 78 | 4 | 12 | 141 | 14 | 147 | 5.71e-18 | 80.5 |
| Msa0063070 | MtrunA17_Chr3g0103171 | 27.273 | 275 | 165 | 10 | 30 | 298 | 5 | 250 | 1.28e-17 | 81.3 |
| Msa0063070 | MtrunA17_Chr7g0233541 | 26.429 | 280 | 173 | 10 | 31 | 296 | 2 | 262 | 3.88e-17 | 80.5 |
| Msa0063070 | MtrunA17_Chr1g0163081 | 36.364 | 121 | 66 | 4 | 31 | 144 | 6 | 122 | 1.36e-16 | 75.5 |
| Msa0063070 | MtrunA17_Chr1g0154161 | 22.769 | 325 | 189 | 10 | 13 | 317 | 28 | 310 | 1.59e-16 | 79.0 |
| Msa0063070 | MtrunA17_Chr1g0163231 | 24.828 | 290 | 173 | 11 | 15 | 296 | 9 | 261 | 1.97e-16 | 78.6 |
| Msa0063070 | MtrunA17_Chr7g0233521 | 25.182 | 274 | 167 | 7 | 31 | 296 | 2 | 245 | 4.85e-16 | 77.0 |
| Msa0063070 | MtrunA17_Chr7g0233531 | 26.182 | 275 | 163 | 8 | 31 | 296 | 2 | 245 | 6.55e-16 | 76.6 |
| Msa0063070 | MtrunA17_Chr1g0171611 | 24.150 | 294 | 173 | 9 | 15 | 303 | 9 | 257 | 1.59e-15 | 75.9 |
| Msa0063070 | MtrunA17_Chr1g0154131 | 25.253 | 297 | 163 | 11 | 26 | 298 | 193 | 454 | 2.62e-15 | 76.3 |
| Msa0063070 | MtrunA17_Chr1g0162161 | 44.048 | 84 | 43 | 3 | 31 | 114 | 4 | 83 | 4.39e-15 | 72.0 |
| Msa0063070 | MtrunA17_Chr1g0163121 | 34.959 | 123 | 69 | 5 | 29 | 144 | 9 | 127 | 7.69e-15 | 70.9 |
| Msa0063070 | MtrunA17_Chr1g0163191 | 36.036 | 111 | 64 | 3 | 24 | 130 | 14 | 121 | 1.10e-14 | 70.9 |
| Msa0063070 | MtrunA17_Chr3g0077411 | 23.377 | 308 | 169 | 11 | 1 | 298 | 251 | 501 | 1.26e-14 | 74.3 |
| Msa0063070 | MtrunA17_Chr3g0077411 | 30.769 | 104 | 71 | 1 | 14 | 117 | 24 | 126 | 4.85e-11 | 63.5 |
| Msa0063070 | MtrunA17_Chr1g0154151 | 24.465 | 327 | 203 | 12 | 16 | 320 | 13 | 317 | 1.90e-14 | 73.2 |
| Msa0063070 | MtrunA17_Chr1g0154191 | 23.932 | 351 | 212 | 13 | 13 | 320 | 20 | 358 | 1.14e-13 | 71.2 |
| Msa0063070 | MtrunA17_Chr1g0163241 | 32.653 | 147 | 76 | 6 | 15 | 149 | 15 | 150 | 1.21e-13 | 68.2 |
| Msa0063070 | MtrunA17_Chr6g0476181 | 36.190 | 105 | 63 | 3 | 31 | 135 | 2 | 102 | 1.97e-13 | 67.4 |
| Msa0063070 | MtrunA17_Chr1g0154111 | 24.316 | 329 | 198 | 13 | 13 | 298 | 24 | 344 | 5.83e-13 | 69.3 |
| Msa0063070 | MtrunA17_Chr1g0154171 | 24.308 | 325 | 186 | 10 | 16 | 298 | 23 | 329 | 6.87e-13 | 68.6 |
| Msa0063070 | MtrunA17_Chr1g0163141 | 40.698 | 86 | 47 | 3 | 29 | 114 | 9 | 90 | 2.89e-12 | 64.7 |
| Msa0063070 | MtrunA17_Chr3g0077461 | 33.654 | 104 | 68 | 1 | 14 | 117 | 236 | 338 | 4.77e-12 | 66.6 |
| Msa0063070 | MtrunA17_Chr1g0154041 | 23.457 | 324 | 206 | 12 | 14 | 298 | 15 | 335 | 9.90e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063070 | AT3G18990.1 | 24.096 | 332 | 207 | 11 | 15 | 308 | 6 | 330 | 1.19e-18 | 85.9 |
| Msa0063070 | AT3G18990.2 | 24.096 | 332 | 207 | 11 | 15 | 308 | 6 | 330 | 1.53e-18 | 85.9 |
| Msa0063070 | AT3G18960.1 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 7.87e-16 | 75.5 |
| Msa0063070 | AT3G18960.2 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 8.06e-16 | 75.1 |
| Msa0063070 | AT1G49475.1 | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 1.68e-15 | 74.3 |
| Msa0063070 | AT4G01580.1 | 31.373 | 102 | 69 | 1 | 15 | 116 | 30 | 130 | 2.13e-14 | 71.2 |
| Msa0063070 | AT4G33280.1 | 25.163 | 306 | 182 | 10 | 13 | 298 | 23 | 301 | 2.80e-13 | 70.1 |
| Msa0063070 | AT3G18960.3 | 35.632 | 87 | 55 | 1 | 30 | 116 | 8 | 93 | 4.63e-12 | 63.9 |
Find 39 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGACAATAATTTGAAATT+TGG | 0.147270 | 1_2:-23235616 | Msa0063070:CDS |
| TCTTCGATAGTTTCTCTTAA+AGG | 0.186987 | 1_2:+23236823 | None:intergenic |
| AAAACAAATACCTTCAAAAT+AGG | 0.193626 | 1_2:+23235506 | None:intergenic |
| CATCCAATGCAGATGTTTCT+TGG | 0.198538 | 1_2:+23235750 | None:intergenic |
| AAATCTCCATTACCGTCTTT+TGG | 0.251961 | 1_2:-23236724 | Msa0063070:CDS |
| TTTGGAAGCCTTAGAGTAAC+TGG | 0.276749 | 1_2:+23237030 | None:intergenic |
| CTTCGATAGTTTCTCTTAAA+GGG | 0.279640 | 1_2:+23236824 | None:intergenic |
| CTTCATCGCGACGAGGTAAA+AGG | 0.341259 | 1_2:-23236750 | Msa0063070:CDS |
| CAGTTCTTTGAAAATTGTTA+AGG | 0.399825 | 1_2:-23236776 | Msa0063070:CDS |
| AGACTAGTCACCATGTTGTT+TGG | 0.408078 | 1_2:-23236978 | Msa0063070:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.418513 | 1_2:-23237038 | Msa0063070:CDS |
| AAATCTTCAAGAAGGAAAAC+TGG | 0.419117 | 1_2:-23237446 | Msa0063070:intron |
| AAACAAATACCTTCAAAATA+GGG | 0.423752 | 1_2:+23235507 | None:intergenic |
| TGCCCATAAGTTTCGTGAAA+AGG | 0.442811 | 1_2:-23237074 | Msa0063070:CDS |
| AATAATCAATATACATTAAG+TGG | 0.456541 | 1_2:-23235658 | Msa0063070:CDS |
| ATCTTTAACGTGATTGTATG+TGG | 0.460806 | 1_2:-23236871 | Msa0063070:CDS |
| GAAATTAATCATCGGAGTAT+TGG | 0.460918 | 1_2:-23237499 | Msa0063070:CDS |
| TCACTTTATCATACAAAACT+TGG | 0.467338 | 1_2:+23236434 | None:intergenic |
| CCAGAGAGAAAATAGCAACT+TGG | 0.469913 | 1_2:+23235547 | None:intergenic |
| TTGCCAAGAAACATCTGCAT+TGG | 0.471291 | 1_2:-23235753 | Msa0063070:CDS |
| TGTTTCTTGGCAAATTCAAA+TGG | 0.474706 | 1_2:+23235763 | None:intergenic |
| GAAACTCCAAAAGACGGTAA+TGG | 0.485557 | 1_2:+23236718 | None:intergenic |
| AATATACATTAAGTGGTGGT+TGG | 0.506646 | 1_2:-23235651 | Msa0063070:CDS |
| AAACATCTGCATTGGATGGA+AGG | 0.510453 | 1_2:-23235745 | Msa0063070:CDS |
| CTTCAAACAAATCTTCAAGA+AGG | 0.513344 | 1_2:-23237454 | Msa0063070:CDS |
| GCATTGGATGGAAGGAAGAA+AGG | 0.530639 | 1_2:-23235737 | Msa0063070:CDS |
| TAAGTTTCGTGAAAAGGCAT+TGG | 0.531413 | 1_2:-23237068 | Msa0063070:CDS |
| ATACATTAAAAGAGATCTCA+TGG | 0.552062 | 1_2:-23236359 | Msa0063070:intron |
| TTGTTGATCAAGACAAGACA+TGG | 0.566622 | 1_2:-23235705 | Msa0063070:CDS |
| AACTATCGAAGAATATGAAG+AGG | 0.576513 | 1_2:-23236812 | Msa0063070:CDS |
| CAAGAAACATCTGCATTGGA+TGG | 0.581630 | 1_2:-23235749 | Msa0063070:CDS |
| TTGGAAGCCTTAGAGTAACT+GGG | 0.602286 | 1_2:+23237031 | None:intergenic |
| CTTCTCAAGAAATTAATCAT+CGG | 0.602392 | 1_2:-23237507 | Msa0063070:CDS |
| TTCGTGAAAAGGCATTGGCA+AGG | 0.614166 | 1_2:-23237063 | Msa0063070:CDS |
| TTCTTAGAAACTCCAAAAGA+CGG | 0.617235 | 1_2:+23236712 | None:intergenic |
| AATCAATATACATTAAGTGG+TGG | 0.631074 | 1_2:-23235655 | Msa0063070:CDS |
| CATCGCAAAACCAAACAACA+TGG | 0.646479 | 1_2:+23236968 | None:intergenic |
| AAGGATCCTTCATCGCGACG+AGG | 0.680462 | 1_2:-23236757 | Msa0063070:CDS |
| GTGATTGTATGTGGTAAATG+CGG | 0.713782 | 1_2:-23236862 | Msa0063070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATAAATTTTATAT+AGG | - | chr1_2:23235755-23235774 | Msa0063070:CDS | 0.0% |
| !!! | TTATTTTATAAATTTTATAT+AGG | - | chr1_2:23235755-23235774 | Msa0063070:CDS | 0.0% |
| !!! | TTTTTTTTGTTCTATTTTTT+AGG | - | chr1_2:23236488-23236507 | Msa0063070:intron | 10.0% |
| !!! | ACTTTATATTTGTTTTTTTT+TGG | - | chr1_2:23236518-23236537 | Msa0063070:intron | 10.0% |
| !!! | CTTTATATTTGTTTTTTTTT+GGG | - | chr1_2:23236519-23236538 | Msa0063070:intron | 10.0% |
| !!! | TTTTTTTTGTTCTATTTTTT+AGG | - | chr1_2:23236488-23236507 | Msa0063070:intron | 10.0% |
| !!! | ACTTTATATTTGTTTTTTTT+TGG | - | chr1_2:23236518-23236537 | Msa0063070:intron | 10.0% |
| !!! | CTTTATATTTGTTTTTTTTT+GGG | - | chr1_2:23236519-23236538 | Msa0063070:intron | 10.0% |
| !! | ATTATATGGTATAACTTTAT+TGG | + | chr1_2:23236837-23236856 | None:intergenic | 15.0% |
| !! | TATATTAAAGTAGCATTATA+TGG | + | chr1_2:23236851-23236870 | None:intergenic | 15.0% |
| !! | AAATATATATATCTACATGA+TGG | - | chr1_2:23236915-23236934 | Msa0063070:CDS | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | - | chr1_2:23237372-23237391 | Msa0063070:intron | 15.0% |
| !! | ATTATATGGTATAACTTTAT+TGG | + | chr1_2:23236837-23236856 | None:intergenic | 15.0% |
| !! | TATATTAAAGTAGCATTATA+TGG | + | chr1_2:23236851-23236870 | None:intergenic | 15.0% |
| !! | AAATATATATATCTACATGA+TGG | - | chr1_2:23236915-23236934 | Msa0063070:CDS | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | - | chr1_2:23237372-23237391 | Msa0063070:intron | 15.0% |
| !! | TAAATATGAATTGCAAACTT+AGG | - | chr1_2:23235647-23235666 | Msa0063070:CDS | 20.0% |
| !! | GTTAGGACTATAATAAAATA+TGG | - | chr1_2:23235671-23235690 | Msa0063070:CDS | 20.0% |
| !!! | GAATGCGATTTTTTTTTTTT+TGG | + | chr1_2:23237171-23237190 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | - | chr1_2:23237240-23237259 | Msa0063070:intron | 20.0% |
| !! | TAAATATGAATTGCAAACTT+AGG | - | chr1_2:23235647-23235666 | Msa0063070:CDS | 20.0% |
| !! | GTTAGGACTATAATAAAATA+TGG | - | chr1_2:23235671-23235690 | Msa0063070:CDS | 20.0% |
| !!! | GAATGCGATTTTTTTTTTTT+TGG | + | chr1_2:23237171-23237190 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | - | chr1_2:23237240-23237259 | Msa0063070:intron | 20.0% |
| ! | CTTCTCAAGAAATTAATCAT+CGG | - | chr1_2:23235523-23235542 | Msa0063070:CDS | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | + | chr1_2:23235560-23235579 | None:intergenic | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | - | chr1_2:23236026-23236045 | Msa0063070:intron | 25.0% |
| !! | CAGTTCTTTGAAAATTGTTA+AGG | - | chr1_2:23236254-23236273 | Msa0063070:intron | 25.0% |
| !! | TGCAAGATTTCGTAATTTTA+AGG | - | chr1_2:23236404-23236423 | Msa0063070:CDS | 25.0% |
| !!! | ATTTCGTAATTTTAAGGATG+TGG | - | chr1_2:23236410-23236429 | Msa0063070:CDS | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | + | chr1_2:23236599-23236618 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | + | chr1_2:23236665-23236684 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | - | chr1_2:23236671-23236690 | Msa0063070:CDS | 25.0% |
| ! | GATTAATTGTCATGTACTAA+TGG | - | chr1_2:23236789-23236808 | Msa0063070:CDS | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | - | chr1_2:23237239-23237258 | Msa0063070:intron | 25.0% |
| !!! | TATACCCTGATTTTGATTAT+TGG | + | chr1_2:23237247-23237266 | None:intergenic | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | - | chr1_2:23237375-23237394 | Msa0063070:intron | 25.0% |
| !! | GCTGACAATAATTTGAAATT+TGG | - | chr1_2:23237414-23237433 | Msa0063070:intron | 25.0% |
| ! | CTTCTCAAGAAATTAATCAT+CGG | - | chr1_2:23235523-23235542 | Msa0063070:CDS | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | + | chr1_2:23235560-23235579 | None:intergenic | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | - | chr1_2:23236026-23236045 | Msa0063070:intron | 25.0% |
| !! | CAGTTCTTTGAAAATTGTTA+AGG | - | chr1_2:23236254-23236273 | Msa0063070:intron | 25.0% |
| !! | TGCAAGATTTCGTAATTTTA+AGG | - | chr1_2:23236404-23236423 | Msa0063070:CDS | 25.0% |
| !!! | ATTTCGTAATTTTAAGGATG+TGG | - | chr1_2:23236410-23236429 | Msa0063070:CDS | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | + | chr1_2:23236599-23236618 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | + | chr1_2:23236665-23236684 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | - | chr1_2:23236671-23236690 | Msa0063070:CDS | 25.0% |
| ! | GATTAATTGTCATGTACTAA+TGG | - | chr1_2:23236789-23236808 | Msa0063070:CDS | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | - | chr1_2:23237239-23237258 | Msa0063070:intron | 25.0% |
| !!! | TATACCCTGATTTTGATTAT+TGG | + | chr1_2:23237247-23237266 | None:intergenic | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | - | chr1_2:23237375-23237394 | Msa0063070:intron | 25.0% |
| !! | GCTGACAATAATTTGAAATT+TGG | - | chr1_2:23237414-23237433 | Msa0063070:intron | 25.0% |
| GAAATTAATCATCGGAGTAT+TGG | - | chr1_2:23235531-23235550 | Msa0063070:CDS | 30.0% | |
| CTTCAAACAAATCTTCAAGA+AGG | - | chr1_2:23235576-23235595 | Msa0063070:CDS | 30.0% | |
| AAATCTTCAAGAAGGAAAAC+TGG | - | chr1_2:23235584-23235603 | Msa0063070:CDS | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | - | chr1_2:23236025-23236044 | Msa0063070:intron | 30.0% |
| ATCTTTAACGTGATTGTATG+TGG | - | chr1_2:23236159-23236178 | Msa0063070:intron | 30.0% | |
| CTTCGATAGTTTCTCTTAAA+GGG | + | chr1_2:23236209-23236228 | None:intergenic | 30.0% | |
| TCTTCGATAGTTTCTCTTAA+AGG | + | chr1_2:23236210-23236229 | None:intergenic | 30.0% | |
| AACTATCGAAGAATATGAAG+AGG | - | chr1_2:23236218-23236237 | Msa0063070:intron | 30.0% | |
| TTCTTAGAAACTCCAAAAGA+CGG | + | chr1_2:23236321-23236340 | None:intergenic | 30.0% | |
| !! | AATTTTAAGGATGTGGACAA+TGG | - | chr1_2:23236417-23236436 | Msa0063070:CDS | 30.0% |
| GAATTACTCAATTTCTTAGC+AGG | - | chr1_2:23236543-23236562 | Msa0063070:intron | 30.0% | |
| CATGACAATTAATCTCGTTA+AGG | + | chr1_2:23236783-23236802 | None:intergenic | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | - | chr1_2:23237072-23237091 | Msa0063070:CDS | 30.0% | |
| ACATTGCATAATTTATGCAG+GGG | - | chr1_2:23237073-23237092 | Msa0063070:CDS | 30.0% | |
| ACAATTAATTGTGGAGAAGT+GGG | + | chr1_2:23237121-23237140 | None:intergenic | 30.0% | |
| TGTTTCTTGGCAAATTCAAA+TGG | + | chr1_2:23237270-23237289 | None:intergenic | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | - | chr1_2:23237379-23237398 | Msa0063070:intron | 30.0% | |
| GAAATTAATCATCGGAGTAT+TGG | - | chr1_2:23235531-23235550 | Msa0063070:CDS | 30.0% | |
| CTTCAAACAAATCTTCAAGA+AGG | - | chr1_2:23235576-23235595 | Msa0063070:CDS | 30.0% | |
| AAATCTTCAAGAAGGAAAAC+TGG | - | chr1_2:23235584-23235603 | Msa0063070:CDS | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | - | chr1_2:23236025-23236044 | Msa0063070:intron | 30.0% |
| ATCTTTAACGTGATTGTATG+TGG | - | chr1_2:23236159-23236178 | Msa0063070:intron | 30.0% | |
| CTTCGATAGTTTCTCTTAAA+GGG | + | chr1_2:23236209-23236228 | None:intergenic | 30.0% | |
| TCTTCGATAGTTTCTCTTAA+AGG | + | chr1_2:23236210-23236229 | None:intergenic | 30.0% | |
| AACTATCGAAGAATATGAAG+AGG | - | chr1_2:23236218-23236237 | Msa0063070:intron | 30.0% | |
| TTCTTAGAAACTCCAAAAGA+CGG | + | chr1_2:23236321-23236340 | None:intergenic | 30.0% | |
| !! | AATTTTAAGGATGTGGACAA+TGG | - | chr1_2:23236417-23236436 | Msa0063070:CDS | 30.0% |
| GAATTACTCAATTTCTTAGC+AGG | - | chr1_2:23236543-23236562 | Msa0063070:intron | 30.0% | |
| CATGACAATTAATCTCGTTA+AGG | + | chr1_2:23236783-23236802 | None:intergenic | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | - | chr1_2:23237072-23237091 | Msa0063070:CDS | 30.0% | |
| ACATTGCATAATTTATGCAG+GGG | - | chr1_2:23237073-23237092 | Msa0063070:CDS | 30.0% | |
| ACAATTAATTGTGGAGAAGT+GGG | + | chr1_2:23237121-23237140 | None:intergenic | 30.0% | |
| TGTTTCTTGGCAAATTCAAA+TGG | + | chr1_2:23237270-23237289 | None:intergenic | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | - | chr1_2:23237379-23237398 | Msa0063070:intron | 30.0% | |
| GAATTGCAAACTTAGGAGTT+AGG | - | chr1_2:23235654-23235673 | Msa0063070:CDS | 35.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | + | chr1_2:23235961-23235980 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | + | chr1_2:23235962-23235981 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | - | chr1_2:23235962-23235981 | Msa0063070:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_2:23235992-23236011 | Msa0063070:intron | 35.0% | |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | + | chr1_2:23236021-23236040 | None:intergenic | 35.0% |
| GTGATTGTATGTGGTAAATG+CGG | - | chr1_2:23236168-23236187 | Msa0063070:intron | 35.0% | |
| ! | AAATCTCCATTACCGTCTTT+TGG | - | chr1_2:23236306-23236325 | Msa0063070:intron | 35.0% |
| !! | TCTACATGATGGATTGTGAT+TGG | - | chr1_2:23236926-23236945 | Msa0063070:CDS | 35.0% |
| GGACATTGCATAATTTATGC+AGG | - | chr1_2:23237071-23237090 | Msa0063070:CDS | 35.0% | |
| CAATTAATTGTGGAGAAGTG+GGG | + | chr1_2:23237120-23237139 | None:intergenic | 35.0% | |
| CACAATTAATTGTGGAGAAG+TGG | + | chr1_2:23237122-23237141 | None:intergenic | 35.0% | |
| AGAGCTCACACAATTAATTG+TGG | + | chr1_2:23237130-23237149 | None:intergenic | 35.0% | |
| TTGTTGATCAAGACAAGACA+TGG | - | chr1_2:23237325-23237344 | Msa0063070:intron | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | - | chr1_2:23237489-23237508 | Msa0063070:CDS | 35.0% |
| GAATTGCAAACTTAGGAGTT+AGG | - | chr1_2:23235654-23235673 | Msa0063070:CDS | 35.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | + | chr1_2:23235961-23235980 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | + | chr1_2:23235962-23235981 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | - | chr1_2:23235962-23235981 | Msa0063070:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_2:23235992-23236011 | Msa0063070:intron | 35.0% | |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | + | chr1_2:23236021-23236040 | None:intergenic | 35.0% |
| GTGATTGTATGTGGTAAATG+CGG | - | chr1_2:23236168-23236187 | Msa0063070:intron | 35.0% | |
| ! | AAATCTCCATTACCGTCTTT+TGG | - | chr1_2:23236306-23236325 | Msa0063070:intron | 35.0% |
| !! | TCTACATGATGGATTGTGAT+TGG | - | chr1_2:23236926-23236945 | Msa0063070:CDS | 35.0% |
| GGACATTGCATAATTTATGC+AGG | - | chr1_2:23237071-23237090 | Msa0063070:CDS | 35.0% | |
| CAATTAATTGTGGAGAAGTG+GGG | + | chr1_2:23237120-23237139 | None:intergenic | 35.0% | |
| CACAATTAATTGTGGAGAAG+TGG | + | chr1_2:23237122-23237141 | None:intergenic | 35.0% | |
| AGAGCTCACACAATTAATTG+TGG | + | chr1_2:23237130-23237149 | None:intergenic | 35.0% | |
| TTGTTGATCAAGACAAGACA+TGG | - | chr1_2:23237325-23237344 | Msa0063070:intron | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | - | chr1_2:23237489-23237508 | Msa0063070:CDS | 35.0% |
| TCATCCATCTACACTCAAAG+AGG | + | chr1_2:23235704-23235723 | None:intergenic | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | - | chr1_2:23235956-23235975 | Msa0063070:intron | 40.0% | |
| TTGGAAGCCTTAGAGTAACT+GGG | + | chr1_2:23236002-23236021 | None:intergenic | 40.0% | |
| TTTGGAAGCCTTAGAGTAAC+TGG | + | chr1_2:23236003-23236022 | None:intergenic | 40.0% | |
| ! | AGACTAGTCACCATGTTGTT+TGG | - | chr1_2:23236052-23236071 | Msa0063070:intron | 40.0% |
| CATCGCAAAACCAAACAACA+TGG | + | chr1_2:23236065-23236084 | None:intergenic | 40.0% | |
| !!! | CATGTTGTTTGGTTTTGCGA+TGG | - | chr1_2:23236063-23236082 | Msa0063070:intron | 40.0% |
| !!! | TTGTTTGGTTTTGCGATGGT+TGG | - | chr1_2:23236067-23236086 | Msa0063070:intron | 40.0% |
| GAAACTCCAAAAGACGGTAA+TGG | + | chr1_2:23236315-23236334 | None:intergenic | 40.0% | |
| TTAAGGATGTGGACAATGGT+TGG | - | chr1_2:23236421-23236440 | Msa0063070:CDS | 40.0% | |
| !! | TTTTTGGTCTAGTAGCCTAG+TGG | + | chr1_2:23237155-23237174 | None:intergenic | 40.0% |
| TTGCCAAGAAACATCTGCAT+TGG | - | chr1_2:23237277-23237296 | Msa0063070:intron | 40.0% | |
| CATCCAATGCAGATGTTTCT+TGG | + | chr1_2:23237283-23237302 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATTGGA+TGG | - | chr1_2:23237281-23237300 | Msa0063070:intron | 40.0% | |
| AAACATCTGCATTGGATGGA+AGG | - | chr1_2:23237285-23237304 | Msa0063070:intron | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | + | chr1_2:23237486-23237505 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | - | chr1_2:23237483-23237502 | Msa0063070:CDS | 40.0% |
| TCATCCATCTACACTCAAAG+AGG | + | chr1_2:23235704-23235723 | None:intergenic | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | - | chr1_2:23235956-23235975 | Msa0063070:intron | 40.0% | |
| TTGGAAGCCTTAGAGTAACT+GGG | + | chr1_2:23236002-23236021 | None:intergenic | 40.0% | |
| TTTGGAAGCCTTAGAGTAAC+TGG | + | chr1_2:23236003-23236022 | None:intergenic | 40.0% | |
| ! | AGACTAGTCACCATGTTGTT+TGG | - | chr1_2:23236052-23236071 | Msa0063070:intron | 40.0% |
| CATCGCAAAACCAAACAACA+TGG | + | chr1_2:23236065-23236084 | None:intergenic | 40.0% | |
| !!! | CATGTTGTTTGGTTTTGCGA+TGG | - | chr1_2:23236063-23236082 | Msa0063070:intron | 40.0% |
| !!! | TTGTTTGGTTTTGCGATGGT+TGG | - | chr1_2:23236067-23236086 | Msa0063070:intron | 40.0% |
| GAAACTCCAAAAGACGGTAA+TGG | + | chr1_2:23236315-23236334 | None:intergenic | 40.0% | |
| TTAAGGATGTGGACAATGGT+TGG | - | chr1_2:23236421-23236440 | Msa0063070:CDS | 40.0% | |
| !! | TTTTTGGTCTAGTAGCCTAG+TGG | + | chr1_2:23237155-23237174 | None:intergenic | 40.0% |
| TTGCCAAGAAACATCTGCAT+TGG | - | chr1_2:23237277-23237296 | Msa0063070:intron | 40.0% | |
| CATCCAATGCAGATGTTTCT+TGG | + | chr1_2:23237283-23237302 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATTGGA+TGG | - | chr1_2:23237281-23237300 | Msa0063070:intron | 40.0% | |
| AAACATCTGCATTGGATGGA+AGG | - | chr1_2:23237285-23237304 | Msa0063070:intron | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | + | chr1_2:23237486-23237505 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | - | chr1_2:23237483-23237502 | Msa0063070:CDS | 40.0% |
| ACGACCTCTTTGAGTGTAGA+TGG | - | chr1_2:23235697-23235716 | Msa0063070:CDS | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | - | chr1_2:23235967-23235986 | Msa0063070:intron | 45.0% |
| TACCAACTGAGCTAAGGTCA+CGG | + | chr1_2:23237046-23237065 | None:intergenic | 45.0% | |
| ! | TGACCTTAGCTCAGTTGGTA+GGG | - | chr1_2:23237046-23237065 | Msa0063070:CDS | 45.0% |
| CATAATTTATGCAGGGGCCA+GGG | - | chr1_2:23237079-23237098 | Msa0063070:CDS | 45.0% | |
| GCATTGGATGGAAGGAAGAA+AGG | - | chr1_2:23237293-23237312 | Msa0063070:intron | 45.0% | |
| ACGACCTCTTTGAGTGTAGA+TGG | - | chr1_2:23235697-23235716 | Msa0063070:CDS | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | - | chr1_2:23235967-23235986 | Msa0063070:intron | 45.0% |
| TACCAACTGAGCTAAGGTCA+CGG | + | chr1_2:23237046-23237065 | None:intergenic | 45.0% | |
| ! | TGACCTTAGCTCAGTTGGTA+GGG | - | chr1_2:23237046-23237065 | Msa0063070:CDS | 45.0% |
| CATAATTTATGCAGGGGCCA+GGG | - | chr1_2:23237079-23237098 | Msa0063070:CDS | 45.0% | |
| GCATTGGATGGAAGGAAGAA+AGG | - | chr1_2:23237293-23237312 | Msa0063070:intron | 45.0% | |
| !!! | TATATATATTTTTTTTTTGA+AGG | + | chr1_2:23236906-23236925 | None:intergenic | 5.0% |
| !!! | TATATATATTTTTTTTTTGA+AGG | + | chr1_2:23236906-23236925 | None:intergenic | 5.0% |
| ! | CTTTTACCTCGTCGCGATGA+AGG | + | chr1_2:23236282-23236301 | None:intergenic | 50.0% |
| CTTCATCGCGACGAGGTAAA+AGG | - | chr1_2:23236280-23236299 | Msa0063070:intron | 50.0% | |
| ACCAACTGAGCTAAGGTCAC+GGG | + | chr1_2:23237045-23237064 | None:intergenic | 50.0% | |
| GTGACCTTAGCTCAGTTGGT+AGG | - | chr1_2:23237045-23237064 | Msa0063070:CDS | 50.0% | |
| !! | CTTAGCTCAGTTGGTAGGGA+GGG | - | chr1_2:23237050-23237069 | Msa0063070:CDS | 50.0% |
| GCATAATTTATGCAGGGGCC+AGG | - | chr1_2:23237078-23237097 | Msa0063070:CDS | 50.0% | |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | - | chr1_2:23237137-23237156 | Msa0063070:intron | 50.0% |
| ! | CTTTTACCTCGTCGCGATGA+AGG | + | chr1_2:23236282-23236301 | None:intergenic | 50.0% |
| CTTCATCGCGACGAGGTAAA+AGG | - | chr1_2:23236280-23236299 | Msa0063070:intron | 50.0% | |
| ACCAACTGAGCTAAGGTCAC+GGG | + | chr1_2:23237045-23237064 | None:intergenic | 50.0% | |
| GTGACCTTAGCTCAGTTGGT+AGG | - | chr1_2:23237045-23237064 | Msa0063070:CDS | 50.0% | |
| !! | CTTAGCTCAGTTGGTAGGGA+GGG | - | chr1_2:23237050-23237069 | Msa0063070:CDS | 50.0% |
| GCATAATTTATGCAGGGGCC+AGG | - | chr1_2:23237078-23237097 | Msa0063070:CDS | 50.0% | |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | - | chr1_2:23237137-23237156 | Msa0063070:intron | 50.0% |
| AAGGATCCTTCATCGCGACG+AGG | - | chr1_2:23236273-23236292 | Msa0063070:intron | 55.0% | |
| TCCCGTGACCTTAGCTCAGT+TGG | - | chr1_2:23237041-23237060 | Msa0063070:CDS | 55.0% | |
| CCTCCCTACCAACTGAGCTA+AGG | + | chr1_2:23237052-23237071 | None:intergenic | 55.0% | |
| !! | CCTTAGCTCAGTTGGTAGGG+AGG | - | chr1_2:23237049-23237068 | Msa0063070:CDS | 55.0% |
| ! | TTGTGGAGAAGTGGGGTGTC+CGG | + | chr1_2:23237113-23237132 | None:intergenic | 55.0% |
| AAGGATCCTTCATCGCGACG+AGG | - | chr1_2:23236273-23236292 | Msa0063070:intron | 55.0% | |
| TCCCGTGACCTTAGCTCAGT+TGG | - | chr1_2:23237041-23237060 | Msa0063070:CDS | 55.0% | |
| CCTCCCTACCAACTGAGCTA+AGG | + | chr1_2:23237052-23237071 | None:intergenic | 55.0% | |
| !! | CCTTAGCTCAGTTGGTAGGG+AGG | - | chr1_2:23237049-23237068 | Msa0063070:CDS | 55.0% |
| ! | TTGTGGAGAAGTGGGGTGTC+CGG | + | chr1_2:23237113-23237132 | None:intergenic | 55.0% |
| ! | TGTGGAGAAGTGGGGTGTCC+GGG | + | chr1_2:23237112-23237131 | None:intergenic | 60.0% |
| ! | TGTGGAGAAGTGGGGTGTCC+GGG | + | chr1_2:23237112-23237131 | None:intergenic | 60.0% |
| ! | GTGGAGAAGTGGGGTGTCCG+GGG | + | chr1_2:23237111-23237130 | None:intergenic | 65.0% |
| ! | GTGGAGAAGTGGGGTGTCCG+GGG | + | chr1_2:23237111-23237130 | None:intergenic | 65.0% |
| AGGGGCCAGGGTTCGAACCC+CGG | - | chr1_2:23237091-23237110 | Msa0063070:intron | 70.0% | |
| GGTGTCCGGGGTTCGAACCC+TGG | + | chr1_2:23237099-23237118 | None:intergenic | 70.0% | |
| AGGGGCCAGGGTTCGAACCC+CGG | - | chr1_2:23237091-23237110 | Msa0063070:intron | 70.0% | |
| GGTGTCCGGGGTTCGAACCC+TGG | + | chr1_2:23237099-23237118 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 23235519 | 23237533 | 23235519 | ID=Msa0063070;Name=Msa0063070 |
| chr1_2 | mRNA | 23235519 | 23237533 | 23235519 | ID=Msa0063070-mRNA-1;Parent=Msa0063070;Name=Msa0063070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|4|0|324 |
| chr1_2 | exon | 23237447 | 23237533 | 23237447 | ID=Msa0063070-mRNA-1:exon:8478;Parent=Msa0063070-mRNA-1 |
| chr1_2 | exon | 23236614 | 23237100 | 23236614 | ID=Msa0063070-mRNA-1:exon:8477;Parent=Msa0063070-mRNA-1 |
| chr1_2 | exon | 23236360 | 23236487 | 23236360 | ID=Msa0063070-mRNA-1:exon:8476;Parent=Msa0063070-mRNA-1 |
| chr1_2 | exon | 23235519 | 23235791 | 23235519 | ID=Msa0063070-mRNA-1:exon:8475;Parent=Msa0063070-mRNA-1 |
| chr1_2 | CDS | 23237447 | 23237533 | 23237447 | ID=Msa0063070-mRNA-1:cds;Parent=Msa0063070-mRNA-1 |
| chr1_2 | CDS | 23236614 | 23237100 | 23236614 | ID=Msa0063070-mRNA-1:cds;Parent=Msa0063070-mRNA-1 |
| chr1_2 | CDS | 23236360 | 23236487 | 23236360 | ID=Msa0063070-mRNA-1:cds;Parent=Msa0063070-mRNA-1 |
| chr1_2 | CDS | 23235519 | 23235791 | 23235519 | ID=Msa0063070-mRNA-1:cds;Parent=Msa0063070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
