AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063080 MtrunA17_Chr1g0163051 97.583 662 11 4 1 660 1 659 0.0 1327
Msa0063080 MtrunA17_Chr1g0163041 81.939 526 86 3 144 660 53 578 0.0 869
Msa0063080 MtrunA17_Chr8g0368901 73.673 471 120 3 192 659 299 768 0.0 746
Msa0063080 MtrunA17_Chr8g0369301 61.141 561 173 5 143 659 189 748 0.0 711
Msa0063080 MtrunA17_Chr8g0368911 50.348 719 270 11 7 658 66 764 0.0 704
Msa0063080 MtrunA17_Chr6g0467531 56.944 576 201 12 103 647 5 564 0.0 623
Msa0063080 MtrunA17_Chr6g0467381 56.870 575 203 12 103 647 5 564 0.0 617
Msa0063080 MtrunA17_Chr6g0467421 56.696 575 204 12 103 647 5 564 0.0 616
Msa0063080 MtrunA17_Chr6g0467401 56.348 575 206 12 103 647 5 564 0.0 611
Msa0063080 MtrunA17_Chr3g0094881 53.465 606 234 12 88 660 49 639 0.0 598
Msa0063080 MtrunA17_Chr6g0467411 54.475 514 175 10 161 647 1 482 0.0 525
Msa0063080 MtrunA17_Chr2g0306961 52.500 520 161 11 154 647 4 463 7.66e-177 511
Msa0063080 MtrunA17_Chr7g0255181 41.818 495 265 13 159 647 203 680 4.38e-113 355
Msa0063080 MtrunA17_Chr3g0080761 37.897 504 286 11 159 646 141 633 1.81e-107 339
Msa0063080 MtrunA17_Chr5g0399801 36.116 587 339 16 77 652 504 1065 1.74e-106 347
Msa0063080 MtrunA17_Chr8g0354821 39.960 503 279 14 159 648 167 659 3.71e-105 334
Msa0063080 MtrunA17_Chr4g0003501 35.447 615 331 19 57 650 360 929 3.21e-102 333
Msa0063080 MtrunA17_Chr4g0003511 37.302 504 286 11 159 652 545 1028 8.25e-99 326
Msa0063080 MtrunA17_Chr6g0476111 38.923 483 267 13 190 652 196 670 2.92e-91 298
Msa0063080 MtrunA17_Chr6g0476121 38.509 483 269 13 190 652 145 619 2.01e-88 289
Msa0063080 MtrunA17_Chr7g0252211 38.763 485 266 14 190 652 258 733 2.08e-88 291
Msa0063080 MtrunA17_Chr1g0170651 32.341 504 285 12 158 645 57 520 1.59e-57 204
Msa0063080 MtrunA17_Chr7g0232811 29.814 483 242 14 193 652 107 515 1.41e-55 198
Msa0063080 MtrunA17_Chr7g0232981 30.022 463 246 11 193 653 107 493 6.95e-50 181
Msa0063080 MtrunA17_Chr7g0232841 28.247 485 231 17 193 651 110 503 2.41e-44 166
Msa0063080 MtrunA17_Chr5g0448331 37.179 156 85 3 218 367 267 415 3.59e-19 92.0
Msa0063080 MtrunA17_Chr1g0190311 27.157 313 157 12 397 653 327 624 3.94e-19 91.7
Msa0063080 MtrunA17_Chr1g0183321 25.161 310 162 10 397 651 430 724 4.45e-19 92.0
Msa0063080 MtrunA17_Chr4g0075321 28.804 184 117 3 464 645 869 1040 4.42e-18 89.0
Msa0063080 MtrunA17_Chr6g0460921 27.477 222 134 6 441 660 215 411 8.39e-18 86.3
Msa0063080 MtrunA17_Chr5g0403241 32.086 187 107 5 464 646 1312 1482 9.60e-18 88.2
Msa0063080 MtrunA17_Chr8g0373821 29.508 183 115 4 464 645 346 515 9.74e-18 87.0
Msa0063080 MtrunA17_Chr8g0389931 34.615 156 89 3 218 367 261 409 1.45e-17 87.0
Msa0063080 MtrunA17_Chr7g0232861 35.333 150 81 5 193 339 106 242 4.62e-17 81.3
Msa0063080 MtrunA17_Chr7g0262001 24.675 308 156 12 397 647 388 676 6.62e-16 81.6
Msa0063080 MtrunA17_Chr7g0232761 34.591 159 84 6 193 346 123 266 6.05e-14 72.8
Msa0063080 MtrunA17_Chr3g0143561 32.000 150 91 3 218 367 187 325 8.11e-14 73.9
Msa0063080 MtrunA17_Chr7g0232751 43.077 65 37 0 588 652 31 95 1.88e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063080 AT4G13460.1 54.766 661 273 10 10 660 6 650 0.0 705
Msa0063080 AT4G13460.2 54.766 661 273 10 10 660 6 650 0.0 705
Msa0063080 AT2G33290.1 52.374 653 268 10 21 660 29 651 0.0 672
Msa0063080 AT2G33290.3 52.374 653 268 10 21 660 29 651 0.0 672
Msa0063080 AT2G33290.4 52.374 653 268 10 21 660 29 651 0.0 672
Msa0063080 AT2G33290.2 52.374 653 268 10 21 660 29 651 0.0 672
Msa0063080 AT5G04940.2 38.889 504 277 12 159 648 155 641 2.08e-103 329
Msa0063080 AT5G04940.1 38.889 504 277 12 159 648 155 641 2.08e-103 329
Msa0063080 AT1G73100.1 40.430 465 254 12 194 648 189 640 1.74e-100 322
Msa0063080 AT2G22740.2 36.328 512 293 9 159 652 270 766 4.41e-96 313
Msa0063080 AT2G22740.1 36.328 512 293 9 159 652 270 766 4.41e-96 313
Msa0063080 AT2G35160.5 36.260 524 274 12 146 652 254 734 9.23e-96 311
Msa0063080 AT2G35160.2 36.260 524 274 12 146 652 290 770 1.90e-95 311
Msa0063080 AT2G35160.3 36.260 524 274 12 146 652 290 770 1.90e-95 311
Msa0063080 AT2G35160.1 36.260 524 274 12 146 652 290 770 1.90e-95 311
Msa0063080 AT2G35160.4 36.260 524 274 12 146 652 290 770 1.90e-95 311
Msa0063080 AT5G13960.1 36.456 491 272 16 190 654 126 602 1.39e-88 289
Msa0063080 AT5G13960.2 36.596 470 261 14 210 654 11 468 2.00e-87 282
Msa0063080 AT1G17770.1 37.124 466 269 12 195 648 209 662 5.39e-80 268
Msa0063080 AT2G24740.1 36.255 502 284 14 159 655 262 732 5.44e-76 258
Msa0063080 AT5G47150.1 36.331 278 161 7 92 367 61 324 1.83e-35 137
Msa0063080 AT5G47160.1 37.674 215 122 6 152 363 202 407 1.06e-28 119
Msa0063080 AT5G47160.3 37.674 215 122 6 152 363 202 407 1.06e-28 119
Msa0063080 AT5G47160.2 37.674 215 122 6 152 363 202 407 1.06e-28 119
Msa0063080 AT2G05900.1 36.257 171 104 3 255 425 26 191 3.69e-21 95.1
Msa0063080 AT2G23740.1 32.632 190 104 6 464 646 1177 1349 3.96e-21 99.4
Msa0063080 AT2G23740.3 32.632 190 104 6 464 646 1184 1356 4.01e-21 99.4
Msa0063080 AT2G23740.6 32.632 190 104 6 464 646 1184 1356 4.01e-21 99.4
Msa0063080 AT2G23740.2 32.632 190 104 6 464 646 1184 1356 4.01e-21 99.4
Msa0063080 AT3G03750.2 29.808 208 120 6 440 646 141 323 2.63e-18 87.4
Msa0063080 AT1G57820.1 35.669 157 87 4 218 367 277 426 5.41e-18 88.6
Msa0063080 AT1G57820.3 35.669 157 87 4 218 367 277 426 5.41e-18 88.6
Msa0063080 AT3G04380.3 24.183 306 162 11 397 647 130 420 1.09e-17 87.0
Msa0063080 AT3G04380.1 24.183 306 162 11 397 647 146 436 1.19e-17 87.0
Msa0063080 AT3G04380.2 24.183 306 162 11 397 647 119 409 1.49e-17 86.3
Msa0063080 AT3G04380.4 24.183 306 162 11 397 647 146 436 1.56e-17 86.7
Msa0063080 AT3G04380.6 24.183 306 162 11 397 647 119 409 1.64e-17 86.3
Msa0063080 AT3G04380.5 24.183 306 162 11 397 647 103 393 1.82e-17 85.9
Msa0063080 AT1G57820.2 35.065 154 89 4 218 367 277 423 7.11e-17 85.1
Msa0063080 AT5G39550.1 33.121 157 91 4 218 367 262 411 7.29e-15 78.6
Msa0063080 AT2G23740.4 33.108 148 75 6 464 604 1184 1314 1.36e-14 78.2
Msa0063080 AT2G23740.5 33.108 148 75 6 464 604 1184 1314 1.36e-14 78.2
Msa0063080 AT1G04050.2 25.076 331 160 11 385 647 387 697 2.14e-14 77.4
Msa0063080 AT1G04050.1 25.076 331 160 11 385 647 387 697 2.14e-14 77.4
Msa0063080 AT1G04050.3 25.076 331 160 11 385 647 283 593 2.53e-14 77.0
Msa0063080 AT1G66050.1 32.867 143 83 2 218 354 262 397 9.63e-14 75.1
Msa0063080 AT1G66040.1 32.867 143 83 2 218 354 262 397 1.00e-13 75.1
Msa0063080 AT5G43990.16 27.586 174 108 4 476 647 503 660 4.15e-13 73.2
Msa0063080 AT5G43990.5 27.586 174 108 4 476 647 503 660 4.15e-13 73.2
Msa0063080 AT5G43990.17 27.586 174 108 4 476 647 503 660 4.15e-13 73.2
Msa0063080 AT5G43990.14 27.586 174 108 4 476 647 503 660 4.15e-13 73.2
Msa0063080 AT5G43990.15 27.011 174 109 4 476 647 526 683 4.17e-13 73.2
Msa0063080 AT5G43990.10 27.011 174 109 4 476 647 526 683 4.17e-13 73.2
Msa0063080 AT5G43990.3 27.011 174 109 4 476 647 523 680 4.42e-13 73.2
Msa0063080 AT5G43990.11 27.011 174 109 4 476 647 523 680 4.42e-13 73.2
Msa0063080 AT5G43990.1 27.011 174 109 4 476 647 523 680 4.42e-13 73.2
Msa0063080 AT5G43990.4 27.011 174 109 4 476 647 523 680 4.42e-13 73.2
Msa0063080 AT5G43990.9 27.011 174 109 4 476 647 546 703 5.27e-13 72.8
Msa0063080 AT5G43990.2 27.011 174 109 4 476 647 546 703 5.27e-13 72.8
Msa0063080 AT5G43990.7 27.011 174 109 4 476 647 434 591 5.40e-13 72.8
Msa0063080 AT5G43990.8 27.011 174 109 4 476 647 454 611 6.94e-13 72.4
Msa0063080 AT5G43990.12 27.011 174 109 4 476 647 454 611 6.94e-13 72.4
Msa0063080 AT5G43990.6 27.011 174 109 4 476 647 454 611 6.94e-13 72.4
Msa0063080 AT5G43990.13 27.011 174 109 4 476 647 454 611 6.94e-13 72.4
Msa0063080 AT1G57800.2 31.646 158 93 5 218 367 289 439 3.05e-12 70.5
Msa0063080 AT1G57800.1 32.857 140 80 4 218 350 289 421 7.40e-12 68.9

Find 182 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1_2:-23244480 Msa0063080:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1_2:+23245105 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1_2:+23245117 None:intergenic
CGGAACCGTGTTACGCAAAA+AGG 0.220274 1_2:-23243778 Msa0063080:CDS
CATCAACAGCATCATTGTTT+TGG 0.236400 1_2:+23244967 None:intergenic
ACCGGATCAGCGTCAGTTTC+GGG 0.257025 1_2:-23244799 Msa0063080:CDS
TGGTGGTGGTTGGTTGTTCT+AGG 0.261325 1_2:+23245066 None:intergenic
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1_2:-23244751 Msa0063080:CDS
CTTGCATCTGCATTTGCATC+TGG 0.286549 1_2:+23244939 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1_2:-23243723 Msa0063080:CDS
TACCGGATCAGCGTCAGTTT+CGG 0.304741 1_2:-23244800 Msa0063080:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1_2:-23243518 Msa0063080:CDS
AATGACAGATGTTGGGTTAC+CGG 0.316260 1_2:-23244817 Msa0063080:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1_2:-23243340 Msa0063080:CDS
GCAAGCCACATTCCTCATTC+TGG 0.324681 1_2:+23243477 None:intergenic
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1_2:-23243744 Msa0063080:CDS
AGGATTGTTGGCGCGATTCC+TGG 0.334668 1_2:-23244624 Msa0063080:CDS
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1_2:-23244213 Msa0063080:CDS
AGGATGGAGTTGTGTGTTGT+TGG 0.358052 1_2:-23244573 Msa0063080:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1_2:-23244285 Msa0063080:CDS
AGCTGGGATTGATTATTTGC+CGG 0.365503 1_2:-23244532 Msa0063080:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1_2:-23244342 Msa0063080:CDS
GTATGGAGCCTGTCGGTATA+AGG 0.366084 1_2:-23244053 Msa0063080:CDS
GTCAGTTTCGGGACGTTGTT+AGG 0.371088 1_2:-23244788 Msa0063080:CDS
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1_2:-23244180 Msa0063080:CDS
TTGTGTGTTGTTGGTTTACA+TGG 0.373186 1_2:-23244564 Msa0063080:CDS
CACTTTGTGTTTCATGAAAG+TGG 0.374630 1_2:-23243961 Msa0063080:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1_2:+23245043 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1_2:-23243731 Msa0063080:CDS
TGCATTATGGGATTGAGGTT+AGG 0.376465 1_2:-23244329 Msa0063080:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1_2:+23245239 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1_2:+23245256 None:intergenic
GCATTATGGGATTGAGGTTA+GGG 0.381831 1_2:-23244328 Msa0063080:CDS
GACTAGGATGGTTTATGATT+CGG 0.389828 1_2:-23244763 Msa0063080:CDS
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1_2:+23245022 None:intergenic
TTCGAACAGGTGGACGGAAT+GGG 0.394764 1_2:-23243581 Msa0063080:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1_2:-23244286 Msa0063080:CDS
CATGAAAGTGGGAATGCAAC+AGG 0.403240 1_2:-23243949 Msa0063080:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1_2:+23245037 None:intergenic
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1_2:-23245036 Msa0063080:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.408695 1_2:-23244264 Msa0063080:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1_2:+23245185 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1_2:+23243692 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1_2:-23244341 Msa0063080:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1_2:+23245049 None:intergenic
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1_2:-23243798 Msa0063080:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1_2:+23243433 None:intergenic
GCGATTCCTGGGATTTGTAT+TGG 0.420322 1_2:-23244612 Msa0063080:CDS
ATGTTTATGATGGATTGTAT+AGG 0.423249 1_2:-23244254 Msa0063080:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1_2:-23243675 Msa0063080:CDS
TGTATAGGATTATTGAATGC+TGG 0.423863 1_2:-23244239 Msa0063080:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1_2:+23243514 None:intergenic
AGAAGCCCGCTTTGACTGTA+AGG 0.435492 1_2:+23243862 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1_2:+23245052 None:intergenic
CTTGTTCGAATGACAGATGT+TGG 0.438682 1_2:-23244825 Msa0063080:CDS
TCTTGATATTTCCAAGGGTA+TGG 0.441501 1_2:-23244070 Msa0063080:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1_2:-23244166 Msa0063080:CDS
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1_2:+23245234 None:intergenic
AATCGCGATAAGAGGATTGT+TGG 0.454649 1_2:-23244636 Msa0063080:CDS
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1_2:-23243743 Msa0063080:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1_2:-23243736 Msa0063080:CDS
TGTGGTTGAATCGCGATAAG+AGG 0.456612 1_2:-23244644 Msa0063080:CDS
GAACAACCAACCACCACCAC+CGG 0.462238 1_2:-23245062 Msa0063080:CDS
GCTATTGTTCCGGTTTCTGC+TGG 0.463618 1_2:-23244915 Msa0063080:CDS
CTCTTGATGTATCCAGAATG+AGG 0.465074 1_2:-23243489 Msa0063080:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1_2:-23244469 Msa0063080:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1_2:+23245248 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1_2:+23245046 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1_2:-23243730 Msa0063080:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1_2:-23244426 Msa0063080:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1_2:-23244280 Msa0063080:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1_2:-23244219 Msa0063080:CDS
AGGCGATGTTATTATTTACT+CGG 0.481383 1_2:-23244433 Msa0063080:CDS
TCCCGAAACTGACGCTGATC+CGG 0.482112 1_2:+23244798 None:intergenic
GGATTGTTGGCGCGATTCCT+GGG 0.482675 1_2:-23244623 Msa0063080:CDS
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1_2:-23244732 Msa0063080:CDS
GGGACGTTGTTAGGAGGACT+AGG 0.486488 1_2:-23244779 Msa0063080:CDS
GGCCTTGAGAAACAAAATCT+AGG 0.488155 1_2:+23245087 None:intergenic
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1_2:+23245056 None:intergenic
GAGTATGCATTATGGGATTG+AGG 0.491128 1_2:-23244334 Msa0063080:CDS
GCTGGGATTGATTATTTGCC+GGG 0.497020 1_2:-23244531 Msa0063080:CDS
TTTCGAACAGGTGGACGGAA+TGG 0.498413 1_2:-23243582 Msa0063080:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1_2:-23243676 Msa0063080:CDS
TTGTTCGAATGACAGATGTT+GGG 0.500232 1_2:-23244824 Msa0063080:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1_2:-23245189 Msa0063080:CDS
GGCGATGTTATTATTTACTC+GGG 0.502452 1_2:-23244432 Msa0063080:CDS
AATTTATCTCTGATTCAAGA+TGG 0.504650 1_2:-23243556 Msa0063080:CDS
TGCCCCTCCTCCTGCTGGTG+AGG 0.508629 1_2:-23244874 Msa0063080:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.511958 1_2:-23243761 Msa0063080:CDS
AATAATGCCCCTCCTCCTGC+TGG 0.512692 1_2:-23244879 Msa0063080:CDS
TATATCTCTTGATATTTCCA+AGG 0.512997 1_2:-23244076 Msa0063080:CDS
ATTGAGGTTAGGGTTATTCG+TGG 0.514365 1_2:-23244318 Msa0063080:CDS
ATTCGTGGTGTGAGGTATGA+AGG 0.515290 1_2:-23244303 Msa0063080:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1_2:-23243380 Msa0063080:CDS
GGATATTGAAATTCTTGCGT+TGG 0.517003 1_2:+23245161 None:intergenic
TTACTCGGGTCATGGTGGAC+AGG 0.519127 1_2:-23244418 Msa0063080:CDS
ACCGACAGGCTCCATACCCT+TGG 0.521929 1_2:+23244059 None:intergenic
TTATTCTCACCAGCAGAAAC+CGG 0.525158 1_2:+23244906 None:intergenic
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1_2:-23244476 Msa0063080:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1_2:+23245212 None:intergenic
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1_2:-23244477 Msa0063080:CDS
TACATGGTCAACCACAAGCT+GGG 0.533174 1_2:-23244548 Msa0063080:CDS
ACTTTGTGTTTCATGAAAGT+GGG 0.535570 1_2:-23243960 Msa0063080:CDS
CAAAGCGGGCTTCTCTTGAA+AGG 0.538573 1_2:-23243853 Msa0063080:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1_2:-23244228 Msa0063080:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1_2:+23243346 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1_2:+23244486 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1_2:-23243732 Msa0063080:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1_2:-23245056 Msa0063080:CDS
ATATCTCTTGATATTTCCAA+GGG 0.542298 1_2:-23244075 Msa0063080:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1_2:-23243700 Msa0063080:CDS
ACTTTCCTTACAGTCAAAGC+GGG 0.545405 1_2:-23243867 Msa0063080:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1_2:-23244374 Msa0063080:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1_2:+23245203 None:intergenic
TTCCGACGCTCATTCACTGA+AGG 0.548549 1_2:-23245005 Msa0063080:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1_2:-23243716 Msa0063080:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1_2:+23243618 None:intergenic
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1_2:-23243845 Msa0063080:CDS
AACCTCACCAGCAGGAGGAG+GGG 0.558398 1_2:+23244872 None:intergenic
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1_2:-23244165 Msa0063080:CDS
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1_2:-23244375 Msa0063080:CDS
ATAACCTCACCAGCAGGAGG+AGG 0.563671 1_2:+23244870 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 1_2:-23244549 Msa0063080:CDS
TCGAACAGGTGGACGGAATG+GGG 0.569248 1_2:-23243580 Msa0063080:CDS
GTGGACAGGATAAGAATTCG+AGG 0.571781 1_2:-23244404 Msa0063080:CDS
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1_2:-23244513 Msa0063080:CDS
CGTTGTTAGGAGGACTAGGA+TGG 0.572606 1_2:-23244775 Msa0063080:CDS
ACAGGATAAGAATTCGAGGC+AGG 0.572812 1_2:-23244400 Msa0063080:CDS
AGATGCAAGAGCTATTGTTC+CGG 0.573112 1_2:-23244925 Msa0063080:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1_2:+23243329 None:intergenic
CGATGAGGAGTCGAGGATTG+TGG 0.574012 1_2:-23244662 Msa0063080:CDS
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1_2:-23244731 Msa0063080:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1_2:+23243350 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1_2:-23244361 Msa0063080:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1_2:+23245197 None:intergenic
TGCAACAGGTTGTCAATGTG+AGG 0.581743 1_2:-23243935 Msa0063080:CDS
ACATTCATAACCTCACCAGC+AGG 0.581786 1_2:+23244864 None:intergenic
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1_2:-23243443 Msa0063080:CDS
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1_2:+23245025 None:intergenic
TAACCTCACCAGCAGGAGGA+GGG 0.592169 1_2:+23244871 None:intergenic
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1_2:-23245190 Msa0063080:CDS
CTTTCATGAAACACAAAGTG+TGG 0.594064 1_2:+23243964 None:intergenic
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1_2:-23245033 Msa0063080:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1_2:+23243349 None:intergenic
AAGTGTGGAAAAGTAGCCCT+AGG 0.596819 1_2:+23243979 None:intergenic
AGTTTCGGGACGTTGTTAGG+AGG 0.598043 1_2:-23244785 Msa0063080:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1_2:+23244087 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1_2:+23245173 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1_2:+23243523 None:intergenic
CTGGTGAGGTTATGAATGTA+CGG 0.606823 1_2:-23244860 Msa0063080:CDS
TTAGGGTTATTCGTGGTGTG+AGG 0.607128 1_2:-23244311 Msa0063080:CDS
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1_2:+23245003 None:intergenic
ACATCACCAATACAAATCCC+AGG 0.617403 1_2:+23244606 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1_2:-23243631 Msa0063080:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1_2:-23243660 Msa0063080:CDS
CCATTCGAACTCATACTCCC+CGG 0.628119 1_2:+23244513 None:intergenic
TATGAGGATGATGTTGATGA+AGG 0.628797 1_2:-23244453 Msa0063080:CDS
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1_2:-23244356 Msa0063080:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1_2:+23243526 None:intergenic
GCAACAGGTTGTCAATGTGA+GGG 0.638640 1_2:-23243934 Msa0063080:CDS
GACTTTCCTTACAGTCAAAG+CGG 0.639876 1_2:-23243868 Msa0063080:CDS
ATCGCAAACAGCATAATGTG+AGG 0.644756 1_2:+23243382 None:intergenic
AAATAATCAATCCCAGCTTG+TGG 0.646654 1_2:+23244537 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1_2:-23243316 Msa0063080:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1_2:+23244102 None:intergenic
CTGGGATTGATTATTTGCCG+GGG 0.652302 1_2:-23244530 Msa0063080:CDS
TCGCAAACAGCATAATGTGA+GGG 0.654166 1_2:+23243383 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1_2:-23244677 Msa0063080:CDS
TTCATAACCTCACCAGCAGG+AGG 0.665106 1_2:+23244867 None:intergenic
TGAGGCGGACAACTACAAGA+AGG 0.667023 1_2:+23243805 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1_2:-23243659 Msa0063080:CDS
ATTATTTACTCGGGTCATGG+TGG 0.676989 1_2:-23244423 Msa0063080:CDS
TCTACTACGATGAGGAGTCG+AGG 0.680653 1_2:-23244669 Msa0063080:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1_2:+23243790 None:intergenic
TCCAAGGGTATGGAGCCTGT+CGG 0.682923 1_2:-23244060 Msa0063080:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1_2:+23244000 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1_2:+23245213 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.724410 1_2:+23243787 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1_2:+23245214 None:intergenic
TGTATCCAGAATGAGGAATG+TGG 0.734351 1_2:-23243482 Msa0063080:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1_2:-23243674 Msa0063080:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1_2:+23245215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTGTTTCATAAAAAA+TGG - chr1_2:23244653-23244672 Msa0063080:CDS 15.0%
!!! TGTTTTTGTTTCATAAAAAA+TGG - chr1_2:23244653-23244672 Msa0063080:CDS 15.0%
!!! TTAGATTTAGGTTTAGATTT+TGG + chr1_2:23243434-23243453 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG - chr1_2:23244357-23244376 Msa0063080:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG - chr1_2:23244360-23244379 Msa0063080:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG + chr1_2:23243434-23243453 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG - chr1_2:23244357-23244376 Msa0063080:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG - chr1_2:23244360-23244379 Msa0063080:CDS 20.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG + chr1_2:23243429-23243448 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG - chr1_2:23243832-23243851 Msa0063080:CDS 25.0%
!!! ATGTTTATGATGGATTGTAT+AGG - chr1_2:23244294-23244313 Msa0063080:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG - chr1_2:23244472-23244491 Msa0063080:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG - chr1_2:23244473-23244492 Msa0063080:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG - chr1_2:23244992-23245011 Msa0063080:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG + chr1_2:23243429-23243448 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG - chr1_2:23243832-23243851 Msa0063080:CDS 25.0%
!!! ATGTTTATGATGGATTGTAT+AGG - chr1_2:23244294-23244313 Msa0063080:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG - chr1_2:23244472-23244491 Msa0063080:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG - chr1_2:23244473-23244492 Msa0063080:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG - chr1_2:23244992-23245011 Msa0063080:CDS 25.0%
!! AATGTTTGGTTTGGATTATG+AGG + chr1_2:23243303-23243322 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG + chr1_2:23243411-23243430 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG + chr1_2:23243416-23243435 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG - chr1_2:23243459-23243478 Msa0063080:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG - chr1_2:23243955-23243974 Msa0063080:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG - chr1_2:23243959-23243978 Msa0063080:CDS 30.0%
AGGCGATGTTATTATTTACT+CGG - chr1_2:23244115-23244134 Msa0063080:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG - chr1_2:23244284-23244303 Msa0063080:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG - chr1_2:23244309-23244328 Msa0063080:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG - chr1_2:23244368-23244387 Msa0063080:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG - chr1_2:23244400-23244419 Msa0063080:CDS 30.0%
CACATAGGTTTATAACACAA+AGG + chr1_2:23244449-23244468 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG + chr1_2:23244464-23244483 None:intergenic 30.0%
ACTTTGTGTTTCATGAAAGT+GGG - chr1_2:23244588-23244607 Msa0063080:CDS 30.0%
TATTAATGAATCACCACTCA+TGG + chr1_2:23244933-23244952 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG + chr1_2:23245049-23245068 None:intergenic 30.0%
!! AATGTTTGGTTTGGATTATG+AGG + chr1_2:23243303-23243322 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG + chr1_2:23243411-23243430 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG + chr1_2:23243416-23243435 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG - chr1_2:23243459-23243478 Msa0063080:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG - chr1_2:23243955-23243974 Msa0063080:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG - chr1_2:23243959-23243978 Msa0063080:CDS 30.0%
AGGCGATGTTATTATTTACT+CGG - chr1_2:23244115-23244134 Msa0063080:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG - chr1_2:23244284-23244303 Msa0063080:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG - chr1_2:23244309-23244328 Msa0063080:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG - chr1_2:23244368-23244387 Msa0063080:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG - chr1_2:23244400-23244419 Msa0063080:CDS 30.0%
CACATAGGTTTATAACACAA+AGG + chr1_2:23244449-23244468 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG + chr1_2:23244464-23244483 None:intergenic 30.0%
ACTTTGTGTTTCATGAAAGT+GGG - chr1_2:23244588-23244607 Msa0063080:CDS 30.0%
TATTAATGAATCACCACTCA+TGG + chr1_2:23244933-23244952 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG + chr1_2:23245049-23245068 None:intergenic 30.0%
GGATATTGAAATTCTTGCGT+TGG + chr1_2:23243390-23243409 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG + chr1_2:23243446-23243465 None:intergenic 35.0%
! CATCAACAGCATCATTGTTT+TGG + chr1_2:23243584-23243603 None:intergenic 35.0%
TTGTTCGAATGACAGATGTT+GGG - chr1_2:23243724-23243743 Msa0063080:CDS 35.0%
GACTAGGATGGTTTATGATT+CGG - chr1_2:23243785-23243804 Msa0063080:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG - chr1_2:23243797-23243816 Msa0063080:CDS 35.0%
!! TTGTGTGTTGTTGGTTTACA+TGG - chr1_2:23243984-23244003 Msa0063080:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr1_2:23244014-23244033 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG + chr1_2:23244065-23244084 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG - chr1_2:23244095-23244114 Msa0063080:CDS 35.0%
GGCGATGTTATTATTTACTC+GGG - chr1_2:23244116-23244135 Msa0063080:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG - chr1_2:23244122-23244141 Msa0063080:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG - chr1_2:23244320-23244339 Msa0063080:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG - chr1_2:23244329-23244348 Msa0063080:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG - chr1_2:23244335-23244354 Msa0063080:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG - chr1_2:23244383-23244402 Msa0063080:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG - chr1_2:23244403-23244422 Msa0063080:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG - chr1_2:23244417-23244436 Msa0063080:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG - chr1_2:23244478-23244497 Msa0063080:CDS 35.0%
! TTAAAAAGCCTTATACCGAC+AGG + chr1_2:23244506-23244525 None:intergenic 35.0%
GGAAGATACTCAAAACACAT+CGG + chr1_2:23244551-23244570 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG - chr1_2:23244552-23244571 Msa0063080:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG - chr1_2:23244553-23244572 Msa0063080:CDS 35.0%
CTTTCATGAAACACAAAGTG+TGG + chr1_2:23244587-23244606 None:intergenic 35.0%
CACTTTGTGTTTCATGAAAG+TGG - chr1_2:23244587-23244606 Msa0063080:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG - chr1_2:23244787-23244806 Msa0063080:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG - chr1_2:23244805-23244824 Msa0063080:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG + chr1_2:23244859-23244878 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG - chr1_2:23244873-23244892 Msa0063080:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG - chr1_2:23244874-23244893 Msa0063080:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG - chr1_2:23244917-23244936 Msa0063080:CDS 35.0%
AAATCCAAAGGAGGAATTGA+TGG + chr1_2:23245037-23245056 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG + chr1_2:23245046-23245065 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG + chr1_2:23245118-23245137 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG + chr1_2:23243390-23243409 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG + chr1_2:23243446-23243465 None:intergenic 35.0%
! CATCAACAGCATCATTGTTT+TGG + chr1_2:23243584-23243603 None:intergenic 35.0%
TTGTTCGAATGACAGATGTT+GGG - chr1_2:23243724-23243743 Msa0063080:CDS 35.0%
GACTAGGATGGTTTATGATT+CGG - chr1_2:23243785-23243804 Msa0063080:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG - chr1_2:23243797-23243816 Msa0063080:CDS 35.0%
!! TTGTGTGTTGTTGGTTTACA+TGG - chr1_2:23243984-23244003 Msa0063080:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr1_2:23244014-23244033 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG + chr1_2:23244065-23244084 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG - chr1_2:23244095-23244114 Msa0063080:CDS 35.0%
GGCGATGTTATTATTTACTC+GGG - chr1_2:23244116-23244135 Msa0063080:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG - chr1_2:23244122-23244141 Msa0063080:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG - chr1_2:23244320-23244339 Msa0063080:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG - chr1_2:23244329-23244348 Msa0063080:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG - chr1_2:23244335-23244354 Msa0063080:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG - chr1_2:23244383-23244402 Msa0063080:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG - chr1_2:23244403-23244422 Msa0063080:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG - chr1_2:23244417-23244436 Msa0063080:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG - chr1_2:23244478-23244497 Msa0063080:CDS 35.0%
! TTAAAAAGCCTTATACCGAC+AGG + chr1_2:23244506-23244525 None:intergenic 35.0%
GGAAGATACTCAAAACACAT+CGG + chr1_2:23244551-23244570 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG - chr1_2:23244552-23244571 Msa0063080:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG - chr1_2:23244553-23244572 Msa0063080:CDS 35.0%
CTTTCATGAAACACAAAGTG+TGG + chr1_2:23244587-23244606 None:intergenic 35.0%
CACTTTGTGTTTCATGAAAG+TGG - chr1_2:23244587-23244606 Msa0063080:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG - chr1_2:23244787-23244806 Msa0063080:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG - chr1_2:23244805-23244824 Msa0063080:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG + chr1_2:23244859-23244878 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG - chr1_2:23244873-23244892 Msa0063080:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG - chr1_2:23244874-23244893 Msa0063080:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG - chr1_2:23244917-23244936 Msa0063080:CDS 35.0%
AAATCCAAAGGAGGAATTGA+TGG + chr1_2:23245037-23245056 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG + chr1_2:23245046-23245065 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG + chr1_2:23245118-23245137 None:intergenic 35.0%
GCTGATGGAAATGTTTGGTT+TGG + chr1_2:23243312-23243331 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG + chr1_2:23243336-23243355 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG + chr1_2:23243337-23243356 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG + chr1_2:23243338-23243357 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG + chr1_2:23243339-23243358 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG + chr1_2:23243348-23243367 None:intergenic 40.0%
GGCCTTGAGAAACAAAATCT+AGG + chr1_2:23243464-23243483 None:intergenic 40.0%
AGATGCAAGAGCTATTGTTC+CGG - chr1_2:23243623-23243642 Msa0063080:CDS 40.0%
TTATTCTCACCAGCAGAAAC+CGG + chr1_2:23243645-23243664 None:intergenic 40.0%
CTGGTGAGGTTATGAATGTA+CGG - chr1_2:23243688-23243707 Msa0063080:CDS 40.0%
CTTGTTCGAATGACAGATGT+TGG - chr1_2:23243723-23243742 Msa0063080:CDS 40.0%
AATGACAGATGTTGGGTTAC+CGG - chr1_2:23243731-23243750 Msa0063080:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG - chr1_2:23243871-23243890 Msa0063080:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG - chr1_2:23243912-23243931 Msa0063080:CDS 40.0%
ACATCACCAATACAAATCCC+AGG + chr1_2:23243945-23243964 None:intergenic 40.0%
AGCTGGGATTGATTATTTGC+CGG - chr1_2:23244016-23244035 Msa0063080:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG - chr1_2:23244068-23244087 Msa0063080:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG - chr1_2:23244071-23244090 Msa0063080:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG - chr1_2:23244072-23244091 Msa0063080:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG - chr1_2:23244125-23244144 Msa0063080:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG - chr1_2:23244170-23244189 Msa0063080:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG - chr1_2:23244206-23244225 Msa0063080:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG - chr1_2:23244207-23244226 Msa0063080:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG - chr1_2:23244214-23244233 Msa0063080:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG - chr1_2:23244219-23244238 Msa0063080:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG - chr1_2:23244220-23244239 Msa0063080:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+TGG - chr1_2:23244230-23244249 Msa0063080:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG - chr1_2:23244262-23244281 Msa0063080:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG - chr1_2:23244382-23244401 Msa0063080:CDS 40.0%
GACTTTCCTTACAGTCAAAG+CGG - chr1_2:23244680-23244699 Msa0063080:CDS 40.0%
ACTTTCCTTACAGTCAAAGC+GGG - chr1_2:23244681-23244700 Msa0063080:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG - chr1_2:23244719-23244738 Msa0063080:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG + chr1_2:23244725-23244744 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG + chr1_2:23244778-23244797 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG - chr1_2:23244783-23244802 Msa0063080:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG - chr1_2:23244804-23244823 Msa0063080:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG - chr1_2:23244848-23244867 Msa0063080:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG - chr1_2:23244872-23244891 Msa0063080:CDS 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG - chr1_2:23244954-23244973 Msa0063080:CDS 40.0%
CACCTGTTCGAAAAACGATT+CGG + chr1_2:23244959-23244978 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG - chr1_2:23245030-23245049 Msa0063080:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG - chr1_2:23245059-23245078 Msa0063080:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG - chr1_2:23245066-23245085 Msa0063080:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG - chr1_2:23245105-23245124 Msa0063080:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG + chr1_2:23245168-23245187 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG + chr1_2:23245169-23245188 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG - chr1_2:23245168-23245187 Msa0063080:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG - chr1_2:23245208-23245227 Msa0063080:CDS 40.0%
CATCAGCTACACCATAATCA+AGG + chr1_2:23245222-23245241 None:intergenic 40.0%
GCTGATGGAAATGTTTGGTT+TGG + chr1_2:23243312-23243331 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG + chr1_2:23243336-23243355 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG + chr1_2:23243337-23243356 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG + chr1_2:23243338-23243357 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG + chr1_2:23243339-23243358 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG + chr1_2:23243348-23243367 None:intergenic 40.0%
GGCCTTGAGAAACAAAATCT+AGG + chr1_2:23243464-23243483 None:intergenic 40.0%
AGATGCAAGAGCTATTGTTC+CGG - chr1_2:23243623-23243642 Msa0063080:CDS 40.0%
TTATTCTCACCAGCAGAAAC+CGG + chr1_2:23243645-23243664 None:intergenic 40.0%
CTGGTGAGGTTATGAATGTA+CGG - chr1_2:23243688-23243707 Msa0063080:CDS 40.0%
CTTGTTCGAATGACAGATGT+TGG - chr1_2:23243723-23243742 Msa0063080:CDS 40.0%
AATGACAGATGTTGGGTTAC+CGG - chr1_2:23243731-23243750 Msa0063080:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG - chr1_2:23243871-23243890 Msa0063080:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG - chr1_2:23243912-23243931 Msa0063080:CDS 40.0%
ACATCACCAATACAAATCCC+AGG + chr1_2:23243945-23243964 None:intergenic 40.0%
AGCTGGGATTGATTATTTGC+CGG - chr1_2:23244016-23244035 Msa0063080:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG - chr1_2:23244068-23244087 Msa0063080:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG - chr1_2:23244071-23244090 Msa0063080:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG - chr1_2:23244072-23244091 Msa0063080:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG - chr1_2:23244125-23244144 Msa0063080:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG - chr1_2:23244170-23244189 Msa0063080:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG - chr1_2:23244206-23244225 Msa0063080:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG - chr1_2:23244207-23244226 Msa0063080:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG - chr1_2:23244214-23244233 Msa0063080:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG - chr1_2:23244219-23244238 Msa0063080:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG - chr1_2:23244220-23244239 Msa0063080:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+TGG - chr1_2:23244230-23244249 Msa0063080:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG - chr1_2:23244262-23244281 Msa0063080:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG - chr1_2:23244382-23244401 Msa0063080:CDS 40.0%
GACTTTCCTTACAGTCAAAG+CGG - chr1_2:23244680-23244699 Msa0063080:CDS 40.0%
ACTTTCCTTACAGTCAAAGC+GGG - chr1_2:23244681-23244700 Msa0063080:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG - chr1_2:23244719-23244738 Msa0063080:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG + chr1_2:23244725-23244744 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG + chr1_2:23244778-23244797 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG - chr1_2:23244783-23244802 Msa0063080:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG - chr1_2:23244804-23244823 Msa0063080:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG - chr1_2:23244848-23244867 Msa0063080:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG - chr1_2:23244872-23244891 Msa0063080:CDS 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG - chr1_2:23244954-23244973 Msa0063080:CDS 40.0%
CACCTGTTCGAAAAACGATT+CGG + chr1_2:23244959-23244978 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG - chr1_2:23245030-23245049 Msa0063080:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG - chr1_2:23245059-23245078 Msa0063080:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG - chr1_2:23245066-23245085 Msa0063080:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG - chr1_2:23245105-23245124 Msa0063080:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG + chr1_2:23245168-23245187 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG + chr1_2:23245169-23245188 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG - chr1_2:23245168-23245187 Msa0063080:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG - chr1_2:23245208-23245227 Msa0063080:CDS 40.0%
CATCAGCTACACCATAATCA+AGG + chr1_2:23245222-23245241 None:intergenic 40.0%
! TCTTGCTTCGGTGTAAGCAT+AGG + chr1_2:23243354-23243373 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG + chr1_2:23243548-23243567 None:intergenic 45.0%
CTTGCATCTGCATTTGCATC+TGG + chr1_2:23243612-23243631 None:intergenic 45.0%
ACATTCATAACCTCACCAGC+AGG + chr1_2:23243687-23243706 None:intergenic 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG - chr1_2:23243803-23243822 Msa0063080:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG - chr1_2:23243816-23243835 Msa0063080:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG - chr1_2:23243817-23243836 Msa0063080:CDS 45.0%
TGTGGTTGAATCGCGATAAG+AGG - chr1_2:23243904-23243923 Msa0063080:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG - chr1_2:23243936-23243955 Msa0063080:CDS 45.0%
AGGATGGAGTTGTGTGTTGT+TGG - chr1_2:23243975-23243994 Msa0063080:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG - chr1_2:23243999-23244018 Msa0063080:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG - chr1_2:23244000-23244019 Msa0063080:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG - chr1_2:23244017-23244036 Msa0063080:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG - chr1_2:23244018-23244037 Msa0063080:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG - chr1_2:23244079-23244098 Msa0063080:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG - chr1_2:23244144-23244163 Msa0063080:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG - chr1_2:23244148-23244167 Msa0063080:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG - chr1_2:23244166-23244185 Msa0063080:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG - chr1_2:23244173-23244192 Msa0063080:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG - chr1_2:23244174-23244193 Msa0063080:CDS 45.0%
TTAGGGTTATTCGTGGTGTG+AGG - chr1_2:23244237-23244256 Msa0063080:CDS 45.0%
ATTCGTGGTGTGAGGTATGA+AGG - chr1_2:23244245-23244264 Msa0063080:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG - chr1_2:23244263-23244282 Msa0063080:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG - chr1_2:23244268-23244287 Msa0063080:CDS 45.0%
AAGTGTGGAAAAGTAGCCCT+AGG + chr1_2:23244572-23244591 None:intergenic 45.0%
CATGAAAGTGGGAATGCAAC+AGG - chr1_2:23244599-23244618 Msa0063080:CDS 45.0%
TGCAACAGGTTGTCAATGTG+AGG - chr1_2:23244613-23244632 Msa0063080:CDS 45.0%
GCAACAGGTTGTCAATGTGA+GGG - chr1_2:23244614-23244633 Msa0063080:CDS 45.0%
! TGTCAATGTGAGGGCTTTTG+TGG - chr1_2:23244623-23244642 Msa0063080:CDS 45.0%
! GTCAATGTGAGGGCTTTTGT+GGG - chr1_2:23244624-23244643 Msa0063080:CDS 45.0%
! TCAATGTGAGGGCTTTTGTG+GGG - chr1_2:23244625-23244644 Msa0063080:CDS 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG - chr1_2:23244703-23244722 Msa0063080:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG - chr1_2:23244771-23244790 Msa0063080:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG - chr1_2:23244812-23244831 Msa0063080:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG - chr1_2:23244816-23244835 Msa0063080:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG - chr1_2:23244817-23244836 Msa0063080:CDS 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG - chr1_2:23244957-23244976 Msa0063080:CDS 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG - chr1_2:23244961-23244980 Msa0063080:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG + chr1_2:23245025-23245044 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG + chr1_2:23245028-23245047 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG + chr1_2:23245205-23245224 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG - chr1_2:23245232-23245251 Msa0063080:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG + chr1_2:23243354-23243373 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG + chr1_2:23243548-23243567 None:intergenic 45.0%
CTTGCATCTGCATTTGCATC+TGG + chr1_2:23243612-23243631 None:intergenic 45.0%
ACATTCATAACCTCACCAGC+AGG + chr1_2:23243687-23243706 None:intergenic 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG - chr1_2:23243803-23243822 Msa0063080:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG - chr1_2:23243816-23243835 Msa0063080:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG - chr1_2:23243817-23243836 Msa0063080:CDS 45.0%
TGTGGTTGAATCGCGATAAG+AGG - chr1_2:23243904-23243923 Msa0063080:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG - chr1_2:23243936-23243955 Msa0063080:CDS 45.0%
AGGATGGAGTTGTGTGTTGT+TGG - chr1_2:23243975-23243994 Msa0063080:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG - chr1_2:23243999-23244018 Msa0063080:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG - chr1_2:23244000-23244019 Msa0063080:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG - chr1_2:23244017-23244036 Msa0063080:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG - chr1_2:23244018-23244037 Msa0063080:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG - chr1_2:23244079-23244098 Msa0063080:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG - chr1_2:23244144-23244163 Msa0063080:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG - chr1_2:23244148-23244167 Msa0063080:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG - chr1_2:23244166-23244185 Msa0063080:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG - chr1_2:23244173-23244192 Msa0063080:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG - chr1_2:23244174-23244193 Msa0063080:CDS 45.0%
TTAGGGTTATTCGTGGTGTG+AGG - chr1_2:23244237-23244256 Msa0063080:CDS 45.0%
ATTCGTGGTGTGAGGTATGA+AGG - chr1_2:23244245-23244264 Msa0063080:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG - chr1_2:23244263-23244282 Msa0063080:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG - chr1_2:23244268-23244287 Msa0063080:CDS 45.0%
AAGTGTGGAAAAGTAGCCCT+AGG + chr1_2:23244572-23244591 None:intergenic 45.0%
CATGAAAGTGGGAATGCAAC+AGG - chr1_2:23244599-23244618 Msa0063080:CDS 45.0%
TGCAACAGGTTGTCAATGTG+AGG - chr1_2:23244613-23244632 Msa0063080:CDS 45.0%
GCAACAGGTTGTCAATGTGA+GGG - chr1_2:23244614-23244633 Msa0063080:CDS 45.0%
! TGTCAATGTGAGGGCTTTTG+TGG - chr1_2:23244623-23244642 Msa0063080:CDS 45.0%
! GTCAATGTGAGGGCTTTTGT+GGG - chr1_2:23244624-23244643 Msa0063080:CDS 45.0%
! TCAATGTGAGGGCTTTTGTG+GGG - chr1_2:23244625-23244644 Msa0063080:CDS 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG - chr1_2:23244703-23244722 Msa0063080:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG - chr1_2:23244771-23244790 Msa0063080:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG - chr1_2:23244812-23244831 Msa0063080:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG - chr1_2:23244816-23244835 Msa0063080:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG - chr1_2:23244817-23244836 Msa0063080:CDS 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG - chr1_2:23244957-23244976 Msa0063080:CDS 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG - chr1_2:23244961-23244980 Msa0063080:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG + chr1_2:23245025-23245044 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG + chr1_2:23245028-23245047 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG + chr1_2:23245205-23245224 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG - chr1_2:23245232-23245251 Msa0063080:CDS 45.0%
!! GGGGTGCTGATGGAAATGTT+TGG + chr1_2:23243317-23243336 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG - chr1_2:23243358-23243377 Msa0063080:CDS 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG + chr1_2:23243485-23243504 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG + chr1_2:23243526-23243545 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG + chr1_2:23243529-23243548 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG - chr1_2:23243543-23243562 Msa0063080:CDS 50.0%
GCTATTGTTCCGGTTTCTGC+TGG - chr1_2:23243633-23243652 Msa0063080:CDS 50.0%
TTCATAACCTCACCAGCAGG+AGG + chr1_2:23243684-23243703 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG - chr1_2:23243748-23243767 Msa0063080:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG - chr1_2:23243760-23243779 Msa0063080:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG - chr1_2:23243763-23243782 Msa0063080:CDS 50.0%
CGTTGTTAGGAGGACTAGGA+TGG - chr1_2:23243773-23243792 Msa0063080:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG - chr1_2:23243879-23243898 Msa0063080:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG + chr1_2:23244038-23244057 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG - chr1_2:23244187-23244206 Msa0063080:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG - chr1_2:23244192-23244211 Msa0063080:CDS 50.0%
GTATGGAGCCTGTCGGTATA+AGG - chr1_2:23244495-23244514 Msa0063080:CDS 50.0%
AGAAGCCCGCTTTGACTGTA+AGG + chr1_2:23244689-23244708 None:intergenic 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG - chr1_2:23244695-23244714 Msa0063080:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG + chr1_2:23244746-23244765 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG - chr1_2:23244750-23244769 Msa0063080:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG + chr1_2:23244764-23244783 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG - chr1_2:23244770-23244789 Msa0063080:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG - chr1_2:23244818-23244837 Msa0063080:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG - chr1_2:23244832-23244851 Msa0063080:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG - chr1_2:23244888-23244907 Msa0063080:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG - chr1_2:23244889-23244908 Msa0063080:CDS 50.0%
TTTCGAACAGGTGGACGGAA+TGG - chr1_2:23244966-23244985 Msa0063080:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG - chr1_2:23244967-23244986 Msa0063080:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG + chr1_2:23245074-23245093 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG + chr1_2:23245201-23245220 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG + chr1_2:23245202-23245221 None:intergenic 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG + chr1_2:23243317-23243336 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG - chr1_2:23243358-23243377 Msa0063080:CDS 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG + chr1_2:23243485-23243504 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG + chr1_2:23243526-23243545 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG + chr1_2:23243529-23243548 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG - chr1_2:23243543-23243562 Msa0063080:CDS 50.0%
GCTATTGTTCCGGTTTCTGC+TGG - chr1_2:23243633-23243652 Msa0063080:CDS 50.0%
TTCATAACCTCACCAGCAGG+AGG + chr1_2:23243684-23243703 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG - chr1_2:23243748-23243767 Msa0063080:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG - chr1_2:23243760-23243779 Msa0063080:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG - chr1_2:23243763-23243782 Msa0063080:CDS 50.0%
CGTTGTTAGGAGGACTAGGA+TGG - chr1_2:23243773-23243792 Msa0063080:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG - chr1_2:23243879-23243898 Msa0063080:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG + chr1_2:23244038-23244057 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG - chr1_2:23244187-23244206 Msa0063080:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG - chr1_2:23244192-23244211 Msa0063080:CDS 50.0%
GTATGGAGCCTGTCGGTATA+AGG - chr1_2:23244495-23244514 Msa0063080:CDS 50.0%
AGAAGCCCGCTTTGACTGTA+AGG + chr1_2:23244689-23244708 None:intergenic 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG - chr1_2:23244695-23244714 Msa0063080:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG + chr1_2:23244746-23244765 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG - chr1_2:23244750-23244769 Msa0063080:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG + chr1_2:23244764-23244783 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG - chr1_2:23244770-23244789 Msa0063080:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG - chr1_2:23244818-23244837 Msa0063080:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG - chr1_2:23244832-23244851 Msa0063080:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG - chr1_2:23244888-23244907 Msa0063080:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG - chr1_2:23244889-23244908 Msa0063080:CDS 50.0%
TTTCGAACAGGTGGACGGAA+TGG - chr1_2:23244966-23244985 Msa0063080:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG - chr1_2:23244967-23244986 Msa0063080:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG + chr1_2:23245074-23245093 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG + chr1_2:23245201-23245220 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG + chr1_2:23245202-23245221 None:intergenic 50.0%
ACATTTCCATCAGCACCCCC+TGG - chr1_2:23243318-23243337 Msa0063080:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG - chr1_2:23243359-23243378 Msa0063080:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG + chr1_2:23243366-23243385 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG + chr1_2:23243378-23243397 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG - chr1_2:23243486-23243505 Msa0063080:CDS 55.0%
AATAATGCCCCTCCTCCTGC+TGG - chr1_2:23243669-23243688 Msa0063080:CDS 55.0%
TAACCTCACCAGCAGGAGGA+GGG + chr1_2:23243680-23243699 None:intergenic 55.0%
ATAACCTCACCAGCAGGAGG+AGG + chr1_2:23243681-23243700 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG - chr1_2:23243749-23243768 Msa0063080:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG + chr1_2:23243753-23243772 None:intergenic 55.0%
GGGACGTTGTTAGGAGGACT+AGG - chr1_2:23243769-23243788 Msa0063080:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG - chr1_2:23243886-23243905 Msa0063080:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG - chr1_2:23243924-23243943 Msa0063080:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG - chr1_2:23243925-23243944 Msa0063080:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG - chr1_2:23244035-23244054 Msa0063080:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG - chr1_2:23244130-23244149 Msa0063080:CDS 55.0%
! TCCAAGGGTATGGAGCCTGT+CGG - chr1_2:23244488-23244507 Msa0063080:CDS 55.0%
! TGTGAGGGCTTTTGTGGGGA+AGG - chr1_2:23244629-23244648 Msa0063080:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG + chr1_2:23244761-23244780 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG - chr1_2:23244968-23244987 Msa0063080:CDS 55.0%
ACATTTCCATCAGCACCCCC+TGG - chr1_2:23243318-23243337 Msa0063080:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG - chr1_2:23243359-23243378 Msa0063080:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG + chr1_2:23243366-23243385 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG + chr1_2:23243378-23243397 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG - chr1_2:23243486-23243505 Msa0063080:CDS 55.0%
AATAATGCCCCTCCTCCTGC+TGG - chr1_2:23243669-23243688 Msa0063080:CDS 55.0%
TAACCTCACCAGCAGGAGGA+GGG + chr1_2:23243680-23243699 None:intergenic 55.0%
ATAACCTCACCAGCAGGAGG+AGG + chr1_2:23243681-23243700 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG - chr1_2:23243749-23243768 Msa0063080:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG + chr1_2:23243753-23243772 None:intergenic 55.0%
GGGACGTTGTTAGGAGGACT+AGG - chr1_2:23243769-23243788 Msa0063080:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG - chr1_2:23243886-23243905 Msa0063080:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG - chr1_2:23243924-23243943 Msa0063080:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG - chr1_2:23243925-23243944 Msa0063080:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG - chr1_2:23244035-23244054 Msa0063080:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG - chr1_2:23244130-23244149 Msa0063080:CDS 55.0%
! TCCAAGGGTATGGAGCCTGT+CGG - chr1_2:23244488-23244507 Msa0063080:CDS 55.0%
! TGTGAGGGCTTTTGTGGGGA+AGG - chr1_2:23244629-23244648 Msa0063080:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG + chr1_2:23244761-23244780 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG - chr1_2:23244968-23244987 Msa0063080:CDS 55.0%
!! GGAATACCAGGGGGTGCTGA+TGG + chr1_2:23243327-23243346 None:intergenic 60.0%
AACCTCACCAGCAGGAGGAG+GGG + chr1_2:23243679-23243698 None:intergenic 60.0%
ACCGACAGGCTCCATACCCT+TGG + chr1_2:23244492-23244511 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG - chr1_2:23244825-23244844 Msa0063080:CDS 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG + chr1_2:23243327-23243346 None:intergenic 60.0%
AACCTCACCAGCAGGAGGAG+GGG + chr1_2:23243679-23243698 None:intergenic 60.0%
ACCGACAGGCTCCATACCCT+TGG + chr1_2:23244492-23244511 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG - chr1_2:23244825-23244844 Msa0063080:CDS 60.0%
!! CATTCTGGCGGCGTCGACGC+CGG + chr1_2:23243514-23243533 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG - chr1_2:23243515-23243534 Msa0063080:CDS 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG - chr1_2:23243674-23243693 Msa0063080:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG + chr1_2:23243514-23243533 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG - chr1_2:23243515-23243534 Msa0063080:CDS 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG - chr1_2:23243674-23243693 Msa0063080:CDS 70.0%
CCAACCACCACCACCGGCGC+CGG - chr1_2:23243492-23243511 Msa0063080:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG - chr1_2:23243512-23243531 Msa0063080:CDS 75.0%
CCAACCACCACCACCGGCGC+CGG - chr1_2:23243492-23243511 Msa0063080:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG - chr1_2:23243512-23243531 Msa0063080:CDS 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG + chr1_2:23243495-23243514 None:intergenic 80.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG + chr1_2:23243495-23243514 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG + chr1_2:23243499-23243518 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG + chr1_2:23243502-23243521 None:intergenic 85.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG + chr1_2:23243499-23243518 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG + chr1_2:23243502-23243521 None:intergenic 85.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG + chr1_2:23243505-23243524 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG + chr1_2:23243508-23243527 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG + chr1_2:23243505-23243524 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG + chr1_2:23243508-23243527 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 23243294 23245276 23243294 ID=Msa0063080;Name=Msa0063080
chr1_2 mRNA 23243294 23245276 23243294 ID=Msa0063080-mRNA-1;Parent=Msa0063080;Name=Msa0063080-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|660
chr1_2 exon 23243294 23245276 23243294 ID=Msa0063080-mRNA-1:exon:8479;Parent=Msa0063080-mRNA-1
chr1_2 CDS 23243294 23245276 23243294 ID=Msa0063080-mRNA-1:cds;Parent=Msa0063080-mRNA-1
Gene Sequence

>Msa0063080

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGCCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAAATCCAAAACAATGATGCTGTTGATGAAAATCCAGATGCAAATGCAGATGCAAGAGCTATTGTTCCGGTTTCTGCTGGTGAGAATAATTACAATAATGCCCCTCCTCCTGCTGGTGAGGTTATGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACAGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTTGTTAGGAGGACTAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGTTGAATCGCGATAAGAGGATTGTTGGCGCGATTCCTGGGATTTGTATTGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTTGTTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGCGATGTTATTATTTACTCGGGTCATGGTGGACAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTTAGGGTTATTCGTGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCCTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACACTTTGTGTTTCATGAAAGTGGGAATGCAACAGGTTGTCAATGTGAGGGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAAAATGGAAATGACTTTCCTTACAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACGCAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCGAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTATCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>Msa0063080

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNNDAVDENPDANADARAIVPVSAGENNYNNAPPPAGEVMNVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMEPVGIRLFNDIDKCNDPMCFEYLPRATFPHFVFHESGNATGCQCEGFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN*