AlfalfaGEDB | Msa0063490

M. sativa cultivar zhongmu-4 / Msa0063490

KEGG: K11446
GO: GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063490	RHN78372.1	89.792	578	41	1	1	578	1	560	0.0	1076

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063490	sp\|Q336N8\|JM706_ORYSJ	52.340	470	213	5	6	469	101	565	1.55e-167	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063490	A0A396JLW8	89.792	578	41	1	1	578	1	560	0.0	1076

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TFs/TRs:

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Gene ID	Type	Classification
Msa0063490	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063490	MtrunA17_Chr1g0164761	89.792	578	41	1	1	578	1	560	0.0	1076
Msa0063490	MtrunA17_Chr1g0164731	76.399	572	107	3	2	571	39	584	0.0	881
Msa0063490	MtrunA17_Chr5g0410721	52.209	498	231	3	2	493	83	579	0.0	546
Msa0063490	MtrunA17_Chr3g0116441	37.222	360	190	8	8	346	18	362	2.64e-66	234
Msa0063490	MtrunA17_Chr8g0380981	31.579	551	288	16	4	476	39	578	3.47e-58	210
Msa0063490	MtrunA17_Chr7g0214951	76.667	120	10	2	181	299	99	201	7.86e-55	185
Msa0063490	MtrunA17_Chr1g0189211	30.171	527	278	15	6	454	148	662	1.90e-53	196
Msa0063490	MtrunA17_Chr1g0199511	44.149	188	101	1	152	339	291	474	9.32e-51	189
Msa0063490	MtrunA17_Chr5g0397501	33.256	433	212	16	109	511	323	708	1.07e-50	188
Msa0063490	MtrunA17_Chr2g0303101	33.249	397	227	13	134	502	232	618	1.02e-44	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063490	AT5G46910.1	54.412	476	212	5	7	479	102	575	0.0	537
Msa0063490	AT5G46910.2	54.412	476	212	5	7	479	102	575	0.0	536
Msa0063490	AT2G34880.1	31.520	533	283	14	7	470	60	579	1.47e-60	215
Msa0063490	AT3G48430.1	34.865	370	197	8	8	339	20	383	3.74e-59	214
Msa0063490	AT1G30810.3	30.297	538	288	13	4	466	55	580	1.91e-57	206
Msa0063490	AT1G30810.2	30.297	538	288	13	4	466	55	580	1.91e-57	206
Msa0063490	AT1G30810.1	30.297	538	288	13	4	466	55	580	1.91e-57	206
Msa0063490	AT1G63490.1	42.642	265	126	6	93	340	52	307	9.53e-56	204
Msa0063490	AT1G63490.2	42.803	264	125	6	94	340	306	560	1.13e-55	204
Msa0063490	AT1G63490.4	42.803	264	125	6	94	340	306	560	1.16e-55	204

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Find 74 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGTCTTCACAGAACA+TGG	0.579374	1_2:+24057809	Msa0063490:CDS
AACAAGCAATTTCAATTTGA+AGG	0.380018	1_2:+24057212	Msa0063490:CDS
AAGGTGATGACAAACTCTCC+TGG	0.548617	1_2:-24057932	None:intergenic
AATCCAGCATGATATGAATT+TGG	0.254423	1_2:-24057956	None:intergenic
AATTGAGAGGATGCAGAACT+AGG	0.531709	1_2:-24057755	None:intergenic
ACATAATGTGCCGGTTTACA+AGG	0.487938	1_2:+24057898	Msa0063490:CDS
ACTAAACGCAAAGGAGACTG+TGG	0.706143	1_2:-24057412	None:intergenic
ACTCAGGTGCAAATAAAACT+TGG	0.537060	1_2:+24057723	Msa0063490:CDS
ACTGAAAGCAGAATAATAAC+TGG	0.424878	1_2:+24059324	Msa0063490:intron
ACTGATCCTATGCTTTACAT+TGG	0.515442	1_2:+24057548	Msa0063490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGCATTCTTACTATAGTT+GGG	-	chr1_2:24056490-24056509	None:intergenic	30.0%
AGTAGCATTCTTACTATAGT+TGG	-	chr1_2:24056491-24056510	None:intergenic	30.0%
TGTCCTATATTAGATTGCAT+CGG	-	chr1_2:24056659-24056678	None:intergenic	30.0%
GAAATAATACATGGAGAGAA+AGG	+	chr1_2:24057123-24057142	Msa0063490:CDS	30.0%
TACAAAAATTGCTTCCTTAC+TGG	-	chr1_2:24057451-24057470	None:intergenic	30.0%
TAGAAGATCACTATTTGTAC+AGG	+	chr1_2:24057600-24057619	Msa0063490:CDS	30.0%
TCAATTTGAAAAGACTGTCT+TGG	+	chr1_2:24057772-24057791	Msa0063490:CDS	30.0%
TTATGTTCTAACAAGACATC+AGG	-	chr1_2:24057884-24057903	None:intergenic	30.0%
AGCATGATATGAATTTGGAA+AGG	-	chr1_2:24057954-24057973	None:intergenic	30.0%
TTTCCAAATTCATATCATGC+TGG	+	chr1_2:24057953-24057972	Msa0063490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	24056227	24059604	24056227	ID=Msa0063490;Name=Msa0063490
chr1_2	mRNA	24056227	24059604	24056227	ID=Msa0063490-mRNA-1;Parent=Msa0063490;Name=Msa0063490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.12\|0\|1\|1\|1\|9\|0\|578
chr1_2	exon	24056227	24056332	24056227	ID=Msa0063490-mRNA-1:exon:8632;Parent=Msa0063490-mRNA-1
chr1_2	exon	24056766	24056922	24056766	ID=Msa0063490-mRNA-1:exon:8633;Parent=Msa0063490-mRNA-1
chr1_2	exon	24057014	24057233	24057014	ID=Msa0063490-mRNA-1:exon:8634;Parent=Msa0063490-mRNA-1
chr1_2	exon	24057397	24057450	24057397	ID=Msa0063490-mRNA-1:exon:8635;Parent=Msa0063490-mRNA-1
chr1_2	exon	24057542	24057621	24057542	ID=Msa0063490-mRNA-1:exon:8636;Parent=Msa0063490-mRNA-1
chr1_2	exon	24057709	24057986	24057709	ID=Msa0063490-mRNA-1:exon:8637;Parent=Msa0063490-mRNA-1
chr1_2	exon	24058496	24058891	24058496	ID=Msa0063490-mRNA-1:exon:8638;Parent=Msa0063490-mRNA-1
chr1_2	exon	24058988	24059163	24058988	ID=Msa0063490-mRNA-1:exon:8639;Parent=Msa0063490-mRNA-1
chr1_2	exon	24059335	24059604	24059335	ID=Msa0063490-mRNA-1:exon:8640;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24056227	24056332	24056227	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24056766	24056922	24056766	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24057014	24057233	24057014	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24057397	24057450	24057397	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24057542	24057621	24057542	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24057709	24057986	24057709	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24058496	24058891	24058496	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24058988	24059163	24058988	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1
chr1_2	CDS	24059335	24059604	24059335	ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1

Gene Sequence

>Msa0063490

ATGACGAACATTACTCAAGAATGTCCAACTTATTATCCATCAGAACAAGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCACCAATCGCTGCCTCTAATCCTGCTTCTTTTGTCTTAACGGAAGAGAAAAAGGATTTTAAGTTTAACACAATTGTACAGCCTCTTAGAGTTTTCAAATCGAATGAGATGGATAAAATAACTTTTTCTAAGAGAAGAAGAAAATATACATATCATGAATTTGAAGCTCTTGCAAACAAGGCGTTTTCCAAAAGATTTTGCGGTAAAGAAGATCTCTCTTGTTTAGATATCGAAAAAGTGTTCTGGCACGAAATAATACATGGAGAGAAAGGAACAGTTGAGTATGGAGTCAATGTTGAGGAAAGCGCCTTTTCAAGTGATCCTGATGATAAGCTTGGAACAAGCAATTTCAATTTGAAGAATTTGAAGCGGCTGCCACAGTCTCCTTTGCGTTTAGTTGACAGGAAAATTCCAGGATTAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTGCATGGCATCTAGAAGATCACTATTTGTACAGCATAAATTACCATCACTCAGGTGCAAATAAAACTTGGTATGGTGTGCCTAGTTCTGCATCCTCTCAATTTGAAAAGACTGTCTTGGATCATGTGTATTGCAACAAAGTCTTCACAGAACATGGAGAGAATTGTGCATTCCAATTTCTTGCACAAAAAACAACCATGTTCTCTCCTGATGTCTTGTTAGAACATAATGTGCCGGTTTACAAGGCGGTGCAAAAGCCAGGAGAGTTTGTCATCACCTTTCCAAATTCATATCATGCTGGATTTAGTCATGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTCGGGGCTGCAGCTAGCGAACGTTATTCACATCTCAAAATGCTACCTATATTTCCATATGAGGAACTTCTTTGTAAAGAAGCATTGCTTATCTACAACTCCTCAAAATATAGAGGTTACAAAATCAAACCTGAAGACACATCTTATCGAGCTATTGTACTGTCTTTCTTGCATCTTATTCAATTTTATAAGACATCATTATCACGGTTCGACAGTTCGATAAAGCTTTCAAGCTATTCAAATACATCATTAGGTTCTGTGACATGCAGCCTCTGCTTTAGGGATTGTTATGTAGCTTTCTTGTTGTGCAAGAAATGCTATTCAGATCCAATTTGCCTTTTCCATGACATTGTGCCACAAAATTGTTTATGTGGGAGACAACATACTGTATTTAAGAGGAATGACATGTTAGAACTCGAAGATGCTGCCAAAAGTTTTCAACTGGAAAAGGAATGCATCGACGCATTATCTTTAACAAATTTATTCTCCTATAACATAAATGAATACATCAAAGAACACAAGAATAATAACTGGCATGAGGAAAAAAGTGCTAGAAGAACTGTTAGCTCGCTAGGCTCAACATCTAAAATGAAAACAAGAGTTGCGAACAACATCAAGCACACTGTTGAAAATAATCAAAAGAAGACAAAGAATCGACGTAGAAACAATGTGTCTCCATCAGTGATGAGTACCAAAAGACAACGAGTCCTTTATAACTTGAGAAAACATGAATCAGAACTGATTATCGAAGTTCCTGCAGTATCTTCCCTTTTGGCGACATCTGAAAAATAA

Protein sequence

>Msa0063490

MTNITQECPTYYPSEQEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPASFVLTEEKKDFKFNTIVQPLRVFKSNEMDKITFSKRRRKYTYHEFEALANKAFSKRFCGKEDLSCLDIEKVFWHEIIHGEKGTVEYGVNVEESAFSSDPDDKLGTSNFNLKNLKRLPQSPLRLVDRKIPGLTDPMLYIGMLFSMFAWHLEDHYLYSINYHHSGANKTWYGVPSSASSQFEKTVLDHVYCNKVFTEHGENCAFQFLAQKTTMFSPDVLLEHNVPVYKAVQKPGEFVITFPNSYHAGFSHGFNCGEAVNFAIGDWFPLGAAASERYSHLKMLPIFPYEELLCKEALLIYNSSKYRGYKIKPEDTSYRAIVLSFLHLIQFYKTSLSRFDSSIKLSSYSNTSLGSVTCSLCFRDCYVAFLLCKKCYSDPICLFHDIVPQNCLCGRQHTVFKRNDMLELEDAAKSFQLEKECIDALSLTNLFSYNINEYIKEHKNNNWHEEKSARRTVSSLGSTSKMKTRVANNIKHTVENNQKKTKNRRRNNVSPSVMSTKRQRVLYNLRKHESELIIEVPAVSSLLATSEK*