Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063490 | RHN78372.1 | 89.792 | 578 | 41 | 1 | 1 | 578 | 1 | 560 | 0.0 | 1076 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063490 | sp|Q336N8|JM706_ORYSJ | 52.340 | 470 | 213 | 5 | 6 | 469 | 101 | 565 | 1.55e-167 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063490 | A0A396JLW8 | 89.792 | 578 | 41 | 1 | 1 | 578 | 1 | 560 | 0.0 | 1076 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0063490 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063490 | MtrunA17_Chr1g0164761 | 89.792 | 578 | 41 | 1 | 1 | 578 | 1 | 560 | 0.0 | 1076 |
| Msa0063490 | MtrunA17_Chr1g0164731 | 76.399 | 572 | 107 | 3 | 2 | 571 | 39 | 584 | 0.0 | 881 |
| Msa0063490 | MtrunA17_Chr5g0410721 | 52.209 | 498 | 231 | 3 | 2 | 493 | 83 | 579 | 0.0 | 546 |
| Msa0063490 | MtrunA17_Chr3g0116441 | 37.222 | 360 | 190 | 8 | 8 | 346 | 18 | 362 | 2.64e-66 | 234 |
| Msa0063490 | MtrunA17_Chr8g0380981 | 31.579 | 551 | 288 | 16 | 4 | 476 | 39 | 578 | 3.47e-58 | 210 |
| Msa0063490 | MtrunA17_Chr7g0214951 | 76.667 | 120 | 10 | 2 | 181 | 299 | 99 | 201 | 7.86e-55 | 185 |
| Msa0063490 | MtrunA17_Chr1g0189211 | 30.171 | 527 | 278 | 15 | 6 | 454 | 148 | 662 | 1.90e-53 | 196 |
| Msa0063490 | MtrunA17_Chr1g0199511 | 44.149 | 188 | 101 | 1 | 152 | 339 | 291 | 474 | 9.32e-51 | 189 |
| Msa0063490 | MtrunA17_Chr5g0397501 | 33.256 | 433 | 212 | 16 | 109 | 511 | 323 | 708 | 1.07e-50 | 188 |
| Msa0063490 | MtrunA17_Chr2g0303101 | 33.249 | 397 | 227 | 13 | 134 | 502 | 232 | 618 | 1.02e-44 | 170 |
| Msa0063490 | MtrunA17_Chr7g0214941 | 79.730 | 74 | 15 | 0 | 468 | 541 | 1 | 74 | 6.01e-31 | 115 |
| Msa0063490 | MtrunA17_Chr7g0261401 | 30.794 | 315 | 194 | 10 | 156 | 455 | 338 | 643 | 2.50e-29 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063490 | AT5G46910.1 | 54.412 | 476 | 212 | 5 | 7 | 479 | 102 | 575 | 0.0 | 537 |
| Msa0063490 | AT5G46910.2 | 54.412 | 476 | 212 | 5 | 7 | 479 | 102 | 575 | 0.0 | 536 |
| Msa0063490 | AT2G34880.1 | 31.520 | 533 | 283 | 14 | 7 | 470 | 60 | 579 | 1.47e-60 | 215 |
| Msa0063490 | AT3G48430.1 | 34.865 | 370 | 197 | 8 | 8 | 339 | 20 | 383 | 3.74e-59 | 214 |
| Msa0063490 | AT1G30810.3 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.91e-57 | 206 |
| Msa0063490 | AT1G30810.2 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.91e-57 | 206 |
| Msa0063490 | AT1G30810.1 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.91e-57 | 206 |
| Msa0063490 | AT1G63490.1 | 42.642 | 265 | 126 | 6 | 93 | 340 | 52 | 307 | 9.53e-56 | 204 |
| Msa0063490 | AT1G63490.2 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 1.13e-55 | 204 |
| Msa0063490 | AT1G63490.4 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 1.16e-55 | 204 |
| Msa0063490 | AT4G20400.1 | 27.438 | 605 | 339 | 17 | 4 | 528 | 52 | 636 | 1.33e-55 | 202 |
| Msa0063490 | AT4G20400.2 | 27.656 | 593 | 329 | 17 | 16 | 528 | 7 | 579 | 1.36e-52 | 193 |
| Msa0063490 | AT5G04240.1 | 45.213 | 188 | 99 | 1 | 152 | 339 | 259 | 442 | 4.11e-51 | 190 |
| Msa0063490 | AT1G08620.3 | 34.195 | 348 | 194 | 8 | 117 | 439 | 327 | 664 | 2.61e-45 | 172 |
| Msa0063490 | AT1G08620.2 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.20e-45 | 172 |
| Msa0063490 | AT1G08620.4 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.20e-45 | 172 |
| Msa0063490 | AT1G08620.1 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.20e-45 | 172 |
| Msa0063490 | AT2G38950.1 | 25.198 | 631 | 365 | 20 | 2 | 550 | 102 | 707 | 7.94e-34 | 137 |
| Msa0063490 | AT1G63490.3 | 54.023 | 87 | 40 | 0 | 254 | 340 | 15 | 101 | 2.69e-24 | 108 |
Find 74 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTACCGCAAAATCTTT+TGG | 0.222620 | 1_2:-24057061 | None:intergenic |
| TGACATGCAGCCTCTGCTTT+AGG | 0.237204 | 1_2:+24058805 | Msa0063490:CDS |
| AATCCAGCATGATATGAATT+TGG | 0.254423 | 1_2:-24057956 | None:intergenic |
| GCTCCTGAGGCTTCTAAATA+TGG | 0.264118 | 1_2:+24056311 | Msa0063490:CDS |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1_2:+24056815 | Msa0063490:CDS |
| GATGTATTCATTTATGTTAT+AGG | 0.277368 | 1_2:-24059129 | None:intergenic |
| TCCTGCAGTATCTTCCCTTT+TGG | 0.292966 | 1_2:+24059565 | Msa0063490:CDS |
| GACATGCAGCCTCTGCTTTA+GGG | 0.297262 | 1_2:+24058806 | Msa0063490:CDS |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1_2:+24057138 | Msa0063490:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.338097 | 1_2:-24058600 | None:intergenic |
| AGCTATTCAAATACATCATT+AGG | 0.343820 | 1_2:+24058777 | Msa0063490:CDS |
| ATAAAGGACTCGTTGTCTTT+TGG | 0.343992 | 1_2:-24059504 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1_2:-24058873 | None:intergenic |
| GCTCGATAAGATGTGTCTTC+AGG | 0.367073 | 1_2:-24058675 | None:intergenic |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1_2:+24057212 | Msa0063490:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1_2:+24058517 | Msa0063490:CDS |
| AGTTCCTCATATGGAAATAT+AGG | 0.388305 | 1_2:-24058591 | None:intergenic |
| CTCCTTTGCGTTTAGTTGAC+AGG | 0.388373 | 1_2:+24057419 | Msa0063490:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1_2:-24056796 | None:intergenic |
| ACTGAAAGCAGAATAATAAC+TGG | 0.424878 | 1_2:+24059324 | Msa0063490:intron |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1_2:+24057549 | Msa0063490:CDS |
| TCAATTTGAAAAGACTGTCT+TGG | 0.425142 | 1_2:+24057772 | Msa0063490:CDS |
| TGTTCTGATGGATAATAAGT+TGG | 0.426588 | 1_2:-24056251 | None:intergenic |
| TTCGATTTGAAAACTCTAAG+AGG | 0.430039 | 1_2:-24056864 | None:intergenic |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1_2:-24057195 | None:intergenic |
| TTGGTGATTGGTTTCCACTC+GGG | 0.449709 | 1_2:+24058529 | Msa0063490:CDS |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1_2:+24058510 | Msa0063490:CDS |
| GCTACCTATATTTCCATATG+AGG | 0.458333 | 1_2:+24058587 | Msa0063490:CDS |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1_2:-24056263 | None:intergenic |
| TTACCATATTTAGAAGCCTC+AGG | 0.481047 | 1_2:-24056314 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1_2:+24057914 | Msa0063490:CDS |
| ATGAGGTCTTACCATGGAAA+AGG | 0.484485 | 1_2:-24058881 | None:intergenic |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1_2:+24057898 | Msa0063490:CDS |
| GTGCCACAAAATTGTTTATG+TGG | 0.488853 | 1_2:+24058993 | Msa0063490:CDS |
| TACAACTCCTCAAAATATAG+AGG | 0.493143 | 1_2:+24058639 | Msa0063490:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1_2:+24057032 | Msa0063490:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1_2:+24057953 | Msa0063490:CDS |
| GACAACATACTGTATTTAAG+AGG | 0.498182 | 1_2:+24059018 | Msa0063490:CDS |
| AGAAGAACTGTTAGCTCGCT+AGG | 0.501194 | 1_2:+24059365 | Msa0063490:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1_2:-24057181 | None:intergenic |
| GAAATAATACATGGAGAGAA+AGG | 0.501914 | 1_2:+24057123 | Msa0063490:CDS |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1_2:+24057728 | Msa0063490:CDS |
| ATTGGTGATTGGTTTCCACT+CGG | 0.503752 | 1_2:+24058528 | Msa0063490:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1_2:+24057548 | Msa0063490:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1_2:+24057189 | Msa0063490:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1_2:+24057573 | Msa0063490:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.519294 | 1_2:+24057600 | Msa0063490:CDS |
| TGGTGATTGGTTTCCACTCG+GGG | 0.519820 | 1_2:+24058530 | Msa0063490:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1_2:-24056804 | None:intergenic |
| AATTGAGAGGATGCAGAACT+AGG | 0.531709 | 1_2:-24057755 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1_2:+24057723 | Msa0063490:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1_2:-24057881 | None:intergenic |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1_2:+24057889 | Msa0063490:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.548617 | 1_2:-24057932 | None:intergenic |
| GCAGGATTAGAGGCAGCGAT+TGG | 0.560174 | 1_2:-24056786 | None:intergenic |
| TCTGCAGAAAATTGCTCCTG+AGG | 0.560467 | 1_2:+24056298 | Msa0063490:CDS |
| TTTATAAGACATCATTATCA+CGG | 0.560917 | 1_2:+24058730 | Msa0063490:CDS |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1_2:-24057870 | None:intergenic |
| TGCCACAAAATTGTTTATGT+GGG | 0.576308 | 1_2:+24058994 | Msa0063490:CDS |
| AACAAAGTCTTCACAGAACA+TGG | 0.579374 | 1_2:+24057809 | Msa0063490:CDS |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1_2:+24057965 | Msa0063490:CDS |
| TTCTGGCACGAAATAATACA+TGG | 0.588933 | 1_2:+24057114 | Msa0063490:CDS |
| GCCAAAAGGGAAGATACTGC+AGG | 0.591239 | 1_2:-24059566 | None:intergenic |
| TTCCTGTCAACTAAACGCAA+AGG | 0.593613 | 1_2:-24057421 | None:intergenic |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1_2:-24057554 | None:intergenic |
| TCGCTAGCTGCAGCCCCGAG+TGG | 0.621053 | 1_2:-24058543 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1_2:+24057707 | Msa0063490:intron |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1_2:-24057951 | None:intergenic |
| GCAGAATAATAACTGGCATG+AGG | 0.639560 | 1_2:+24059331 | Msa0063490:intron |
| CATAACAATCCCTAAAGCAG+AGG | 0.654524 | 1_2:-24058815 | None:intergenic |
| TGAATACATCAAAGAACACA+AGG | 0.678690 | 1_2:+24059142 | Msa0063490:CDS |
| TAATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1_2:+24057901 | Msa0063490:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1_2:+24057152 | Msa0063490:CDS |
| ACTAAACGCAAAGGAGACTG+TGG | 0.706143 | 1_2:-24057412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATTTAAAATTAT+AGG | + | chr1_2:24057520-24057539 | Msa0063490:intron | 0.0% |
| !!! | TAATTTTATTTAAAATTATA+GGG | + | chr1_2:24057521-24057540 | Msa0063490:intron | 0.0% |
| !!! | TTTTAGTAAAACCTATATTT+TGG | - | chr1_2:24056608-24056627 | None:intergenic | 15.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1_2:24056744-24056763 | Msa0063490:intron | 15.0% |
| !!! | AAATTCTAAAATCAAATGAA+AGG | - | chr1_2:24057382-24057401 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTAATTCAGATT+AGG | - | chr1_2:24057475-24057494 | None:intergenic | 15.0% |
| !! | TGATGAAAAATTAACTAACT+TGG | + | chr1_2:24056969-24056988 | Msa0063490:intron | 20.0% |
| !!! | TTTGATTTTAGAATTTGAAG+CGG | + | chr1_2:24057386-24057405 | Msa0063490:intron | 20.0% |
| !!! | TGGATATTGGTTATATTTTA+CGG | + | chr1_2:24058062-24058081 | Msa0063490:intron | 20.0% |
| !! | GATTACTTGTGTAAATATTA+CGG | - | chr1_2:24058155-24058174 | None:intergenic | 20.0% |
| !! | GTAATATTTACACAAGTAAT+CGG | + | chr1_2:24058154-24058173 | Msa0063490:intron | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1_2:24058384-24058403 | None:intergenic | 20.0% |
| !! | TTTATAAGACATCATTATCA+CGG | + | chr1_2:24058730-24058749 | Msa0063490:CDS | 20.0% |
| !! | AATAGTCAAATAGAATAATG+AGG | - | chr1_2:24058901-24058920 | None:intergenic | 20.0% |
| !! | GATGTATTCATTTATGTTAT+AGG | - | chr1_2:24059132-24059151 | None:intergenic | 20.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1_2:24056290-24056309 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+TGG | - | chr1_2:24056372-24056391 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+CGG | - | chr1_2:24056372-24056391 | None:intergenic | 25.0% |
| ! | AAAGTGAAACTCCAAAATAT+AGG | + | chr1_2:24056594-24056613 | Msa0063490:intron | 25.0% |
| ! | TCAAATATAAGCATACAAAC+AGG | - | chr1_2:24056732-24056751 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | + | chr1_2:24056901-24056920 | Msa0063490:CDS | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1_2:24057212-24057231 | Msa0063490:CDS | 25.0% |
| ! | AGTCTATTAATCTTTACTTG+TGG | + | chr1_2:24057317-24057336 | Msa0063490:intron | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1_2:24057850-24057869 | None:intergenic | 25.0% |
| !! | ATTATGTTTCTGATGGATAT+TGG | + | chr1_2:24058049-24058068 | Msa0063490:intron | 25.0% |
| !! | TGAATAATAGAAAGGTACAT+AGG | + | chr1_2:24058103-24058122 | Msa0063490:intron | 25.0% |
| !! | GAATAATAGAAAGGTACATA+GGG | + | chr1_2:24058104-24058123 | Msa0063490:intron | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr1_2:24058184-24058203 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTGTTGAGTTT+AGG | + | chr1_2:24058474-24058493 | Msa0063490:intron | 25.0% |
| !!! | TTGAGTTTAGGTTTTAATTG+TGG | + | chr1_2:24058486-24058505 | Msa0063490:intron | 25.0% |
| !! | TTTGTAACCTCTATATTTTG+AGG | - | chr1_2:24058649-24058668 | None:intergenic | 25.0% |
| ! | AGCTATTCAAATACATCATT+AGG | + | chr1_2:24058777-24058796 | Msa0063490:CDS | 25.0% |
| !!! | TAATTTGCTTGTGTTATTGA+TGG | + | chr1_2:24058936-24058955 | Msa0063490:intron | 25.0% |
| !! | ATGGATAAACTTGCTTATTA+TGG | + | chr1_2:24058955-24058974 | Msa0063490:intron | 25.0% |
| !!! | ACTATTTTAATGAAGTTCAG+AGG | - | chr1_2:24059211-24059230 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAGTTATAA+AGG | - | chr1_2:24059523-24059542 | None:intergenic | 25.0% |
| ! | TGTTCTGATGGATAATAAGT+TGG | - | chr1_2:24056254-24056273 | None:intergenic | 30.0% |
| GTAGCATTCTTACTATAGTT+GGG | - | chr1_2:24056490-24056509 | None:intergenic | 30.0% | |
| AGTAGCATTCTTACTATAGT+TGG | - | chr1_2:24056491-24056510 | None:intergenic | 30.0% | |
| !! | GAATGCTACTTACTTTCTTT+TGG | + | chr1_2:24056501-24056520 | Msa0063490:intron | 30.0% |
| ! | AGGTTTTACTAAAATCACAG+TGG | + | chr1_2:24056614-24056633 | Msa0063490:intron | 30.0% |
| TGTCCTATATTAGATTGCAT+CGG | - | chr1_2:24056659-24056678 | None:intergenic | 30.0% | |
| ! | TTCGATTTGAAAACTCTAAG+AGG | - | chr1_2:24056867-24056886 | None:intergenic | 30.0% |
| ! | AGTTTTCAAATCGAATGAGA+TGG | + | chr1_2:24056872-24056891 | Msa0063490:CDS | 30.0% |
| ! | TTCTTTACCGCAAAATCTTT+TGG | - | chr1_2:24057064-24057083 | None:intergenic | 30.0% |
| !! | TAGATATCGAAAAAGTGTTC+TGG | + | chr1_2:24057097-24057116 | Msa0063490:CDS | 30.0% |
| GAAATAATACATGGAGAGAA+AGG | + | chr1_2:24057123-24057142 | Msa0063490:CDS | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | - | chr1_2:24057451-24057470 | None:intergenic | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1_2:24057600-24057619 | Msa0063490:CDS | 30.0% | |
| TCAATTTGAAAAGACTGTCT+TGG | + | chr1_2:24057772-24057791 | Msa0063490:CDS | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1_2:24057884-24057903 | None:intergenic | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1_2:24057954-24057973 | None:intergenic | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1_2:24057953-24057972 | Msa0063490:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | - | chr1_2:24057959-24057978 | None:intergenic | 30.0% | |
| !! | TGGTCTTATTATGTTTCTGA+TGG | + | chr1_2:24058042-24058061 | Msa0063490:intron | 30.0% |
| TTTCTATTATTCAATCGACC+TGG | - | chr1_2:24058096-24058115 | None:intergenic | 30.0% | |
| AGGTCGATTGAATAATAGAA+AGG | + | chr1_2:24058095-24058114 | Msa0063490:intron | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr1_2:24058185-24058204 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr1_2:24058182-24058201 | Msa0063490:intron | 30.0% | |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1_2:24058517-24058536 | Msa0063490:CDS | 30.0% |
| AGTTCCTCATATGGAAATAT+AGG | - | chr1_2:24058594-24058613 | None:intergenic | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1_2:24058603-24058622 | None:intergenic | 30.0% | |
| TACAACTCCTCAAAATATAG+AGG | + | chr1_2:24058639-24058658 | Msa0063490:CDS | 30.0% | |
| TGCCACAAAATTGTTTATGT+GGG | + | chr1_2:24058994-24059013 | Msa0063490:CDS | 30.0% | |
| GACAACATACTGTATTTAAG+AGG | + | chr1_2:24059018-24059037 | Msa0063490:CDS | 30.0% | |
| ! | CTTTTCCAGTTGAAAACTTT+TGG | - | chr1_2:24059072-24059091 | None:intergenic | 30.0% |
| ! | CAAAAGTTTTCAACTGGAAA+AGG | + | chr1_2:24059070-24059089 | Msa0063490:CDS | 30.0% |
| TGAATACATCAAAGAACACA+AGG | + | chr1_2:24059142-24059161 | Msa0063490:CDS | 30.0% | |
| ACTGAAAGCAGAATAATAAC+TGG | + | chr1_2:24059324-24059343 | Msa0063490:intron | 30.0% | |
| TTACCATATTTAGAAGCCTC+AGG | - | chr1_2:24056317-24056336 | None:intergenic | 35.0% | |
| ! | TTTTCCATCACCATGTTTCT+AGG | + | chr1_2:24056359-24056378 | Msa0063490:intron | 35.0% |
| ! | TTTCCATCACCATGTTTCTA+GGG | + | chr1_2:24056360-24056379 | Msa0063490:intron | 35.0% |
| AGACCGATGCAATCTAATAT+AGG | + | chr1_2:24056653-24056672 | Msa0063490:intron | 35.0% | |
| ACAACAGATTCTGCATTTGT+AGG | + | chr1_2:24056688-24056707 | Msa0063490:intron | 35.0% | |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1_2:24056803-24056822 | Msa0063490:CDS | 35.0% |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1_2:24056815-24056834 | Msa0063490:CDS | 35.0% | |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | + | chr1_2:24057032-24057051 | Msa0063490:CDS | 35.0% |
| ! | GCGTTTTCCAAAAGATTTTG+CGG | + | chr1_2:24057054-24057073 | Msa0063490:CDS | 35.0% |
| TTCTGGCACGAAATAATACA+TGG | + | chr1_2:24057114-24057133 | Msa0063490:CDS | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1_2:24057184-24057203 | None:intergenic | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | + | chr1_2:24057434-24057453 | Msa0063490:intron | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1_2:24057548-24057567 | Msa0063490:CDS | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1_2:24057549-24057568 | Msa0063490:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1_2:24057573-24057592 | Msa0063490:CDS | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1_2:24057707-24057726 | Msa0063490:intron | 35.0% | |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1_2:24057721-24057740 | None:intergenic | 35.0% |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1_2:24057723-24057742 | Msa0063490:CDS | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1_2:24057728-24057747 | Msa0063490:CDS | 35.0% | |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1_2:24057771-24057790 | None:intergenic | 35.0% |
| AACAAAGTCTTCACAGAACA+TGG | + | chr1_2:24057809-24057828 | Msa0063490:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1_2:24057889-24057908 | Msa0063490:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1_2:24057965-24057984 | Msa0063490:CDS | 35.0% | |
| ! | TATTTTACGGATAAGTAGCC+AGG | + | chr1_2:24058075-24058094 | Msa0063490:intron | 35.0% |
| CGAGATTTGATTATGGAGTT+CGG | - | chr1_2:24058245-24058264 | None:intergenic | 35.0% | |
| AACTATTAGAACTTCAGGCA+TGG | - | chr1_2:24058298-24058317 | None:intergenic | 35.0% | |
| GCAGTAACTATTAGAACTTC+AGG | - | chr1_2:24058303-24058322 | None:intergenic | 35.0% | |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1_2:24058510-24058529 | Msa0063490:CDS | 35.0% |
| GCTACCTATATTTCCATATG+AGG | + | chr1_2:24058587-24058606 | Msa0063490:CDS | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1_2:24058876-24058895 | None:intergenic | 35.0% | |
| AGAATAATGAGGTCTTACCA+TGG | - | chr1_2:24058890-24058909 | None:intergenic | 35.0% | |
| GTGCCACAAAATTGTTTATG+TGG | + | chr1_2:24058993-24059012 | Msa0063490:CDS | 35.0% | |
| ! | CTCCCACATAAACAATTTTG+TGG | - | chr1_2:24058999-24059018 | None:intergenic | 35.0% |
| GTATGCATTGCTTTATCTTC+AGG | + | chr1_2:24059255-24059274 | Msa0063490:intron | 35.0% | |
| ! | ATAAAGGACTCGTTGTCTTT+TGG | - | chr1_2:24059507-24059526 | None:intergenic | 35.0% |
| !! | TTTTTCAGATGTCGCCAAAA+GGG | - | chr1_2:24059582-24059601 | None:intergenic | 35.0% |
| !! | ATTTTTCAGATGTCGCCAAA+AGG | - | chr1_2:24059583-24059602 | None:intergenic | 35.0% |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1_2:24056266-24056285 | None:intergenic | 40.0% | |
| AAACCCTAGAAACATGGTGA+TGG | - | chr1_2:24056366-24056385 | None:intergenic | 40.0% | |
| AACATCATCACCGTGTTTCT+AGG | + | chr1_2:24056414-24056433 | Msa0063490:intron | 40.0% | |
| ! | ACATCATCACCGTGTTTCTA+GGG | + | chr1_2:24056415-24056434 | Msa0063490:intron | 40.0% |
| CGCGTGCATGTTTAGATTAA+CGG | + | chr1_2:24056548-24056567 | Msa0063490:intron | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | - | chr1_2:24056799-24056818 | None:intergenic | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1_2:24056807-24056826 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1_2:24057138-24057157 | Msa0063490:CDS | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1_2:24057152-24057171 | Msa0063490:CDS | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1_2:24057189-24057208 | Msa0063490:CDS | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1_2:24057198-24057217 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+AGG | - | chr1_2:24057424-24057443 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1_2:24057557-24057576 | None:intergenic | 40.0% | |
| AATTGAGAGGATGCAGAACT+AGG | - | chr1_2:24057758-24057777 | None:intergenic | 40.0% | |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1_2:24057898-24057917 | Msa0063490:CDS | 40.0% |
| ! | AGAAAGGTACATAGGGTTCA+AGG | + | chr1_2:24058111-24058130 | Msa0063490:intron | 40.0% |
| GAACACGCGAGATTTGATTA+TGG | - | chr1_2:24058252-24058271 | None:intergenic | 40.0% | |
| CAGGAACTGAAATTCTGCAT+GGG | - | chr1_2:24058365-24058384 | None:intergenic | 40.0% | |
| !! | ATTGGTGATTGGTTTCCACT+CGG | + | chr1_2:24058528-24058547 | Msa0063490:CDS | 40.0% |
| CATAACAATCCCTAAAGCAG+AGG | - | chr1_2:24058818-24058837 | None:intergenic | 40.0% | |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1_2:24058870-24058889 | Msa0063490:CDS | 40.0% |
| ATGAGGTCTTACCATGGAAA+AGG | - | chr1_2:24058884-24058903 | None:intergenic | 40.0% | |
| ! | TGCTGCCAAAAGTTTTCAAC+TGG | + | chr1_2:24059064-24059083 | Msa0063490:CDS | 40.0% |
| GCAGAATAATAACTGGCATG+AGG | + | chr1_2:24059331-24059350 | Msa0063490:intron | 40.0% | |
| ! | CTTTTGGTACTCATCACTGA+TGG | - | chr1_2:24059491-24059510 | None:intergenic | 40.0% |
| TCTGCAGAAAATTGCTCCTG+AGG | + | chr1_2:24056298-24056317 | Msa0063490:CDS | 45.0% | |
| GCTCCTGAGGCTTCTAAATA+TGG | + | chr1_2:24056311-24056330 | Msa0063490:CDS | 45.0% | |
| GAACTTGAGTACTTCAGCGA+TGG | - | chr1_2:24056529-24056548 | None:intergenic | 45.0% | |
| ACTAAACGCAAAGGAGACTG+TGG | - | chr1_2:24057415-24057434 | None:intergenic | 45.0% | |
| CTCCTTTGCGTTTAGTTGAC+AGG | + | chr1_2:24057419-24057438 | Msa0063490:CDS | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1_2:24057873-24057892 | None:intergenic | 45.0% | |
| !! | TAATGTGCCGGTTTACAAGG+CGG | + | chr1_2:24057901-24057920 | Msa0063490:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1_2:24057911-24057930 | None:intergenic | 45.0% |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1_2:24057935-24057954 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTACATGTCT+TGG | + | chr1_2:24058022-24058041 | Msa0063490:intron | 45.0% | |
| GCAGGAACTGAAATTCTGCA+TGG | - | chr1_2:24058366-24058385 | None:intergenic | 45.0% | |
| !! | TTGGTGATTGGTTTCCACTC+GGG | + | chr1_2:24058529-24058548 | Msa0063490:CDS | 45.0% |
| GCTCGATAAGATGTGTCTTC+AGG | - | chr1_2:24058678-24058697 | None:intergenic | 45.0% | |
| AGAAGAACTGTTAGCTCGCT+AGG | + | chr1_2:24059365-24059384 | Msa0063490:CDS | 45.0% | |
| ! | TCCTGCAGTATCTTCCCTTT+TGG | + | chr1_2:24059565-24059584 | Msa0063490:CDS | 45.0% |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr1_2:24057993-24058012 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr1_2:24057992-24058011 | None:intergenic | 50.0% | |
| TGCAGCGGCATAGGATCAAT+AGG | + | chr1_2:24058219-24058238 | Msa0063490:intron | 50.0% | |
| !! | TGGTGATTGGTTTCCACTCG+GGG | + | chr1_2:24058530-24058549 | Msa0063490:CDS | 50.0% |
| TGACATGCAGCCTCTGCTTT+AGG | + | chr1_2:24058805-24058824 | Msa0063490:CDS | 50.0% | |
| GACATGCAGCCTCTGCTTTA+GGG | + | chr1_2:24058806-24058825 | Msa0063490:CDS | 50.0% | |
| GCCAAAAGGGAAGATACTGC+AGG | - | chr1_2:24059569-24059588 | None:intergenic | 50.0% | |
| GCAGGATTAGAGGCAGCGAT+TGG | - | chr1_2:24056789-24056808 | None:intergenic | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1_2:24057914-24057933 | Msa0063490:CDS | 55.0% | |
| GTACTTCCGCCACTATGCAG+CGG | + | chr1_2:24058204-24058223 | Msa0063490:intron | 55.0% | |
| GATCCTATGCCGCTGCATAG+TGG | - | chr1_2:24058216-24058235 | None:intergenic | 55.0% | |
| CCTATGCCGCTGCATAGTGG+CGG | - | chr1_2:24058213-24058232 | None:intergenic | 60.0% | |
| CCGCCACTATGCAGCGGCAT+AGG | + | chr1_2:24058210-24058229 | Msa0063490:intron | 65.0% | |
| TCGCTAGCTGCAGCCCCGAG+TGG | - | chr1_2:24058546-24058565 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 24056227 | 24059604 | 24056227 | ID=Msa0063490;Name=Msa0063490 |
| chr1_2 | mRNA | 24056227 | 24059604 | 24056227 | ID=Msa0063490-mRNA-1;Parent=Msa0063490;Name=Msa0063490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.12|0|1|1|1|9|0|578 |
| chr1_2 | exon | 24056227 | 24056332 | 24056227 | ID=Msa0063490-mRNA-1:exon:8632;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24056766 | 24056922 | 24056766 | ID=Msa0063490-mRNA-1:exon:8633;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24057014 | 24057233 | 24057014 | ID=Msa0063490-mRNA-1:exon:8634;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24057397 | 24057450 | 24057397 | ID=Msa0063490-mRNA-1:exon:8635;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24057542 | 24057621 | 24057542 | ID=Msa0063490-mRNA-1:exon:8636;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24057709 | 24057986 | 24057709 | ID=Msa0063490-mRNA-1:exon:8637;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24058496 | 24058891 | 24058496 | ID=Msa0063490-mRNA-1:exon:8638;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24058988 | 24059163 | 24058988 | ID=Msa0063490-mRNA-1:exon:8639;Parent=Msa0063490-mRNA-1 |
| chr1_2 | exon | 24059335 | 24059604 | 24059335 | ID=Msa0063490-mRNA-1:exon:8640;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24056227 | 24056332 | 24056227 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24056766 | 24056922 | 24056766 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24057014 | 24057233 | 24057014 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24057397 | 24057450 | 24057397 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24057542 | 24057621 | 24057542 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24057709 | 24057986 | 24057709 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24058496 | 24058891 | 24058496 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24058988 | 24059163 | 24058988 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| chr1_2 | CDS | 24059335 | 24059604 | 24059335 | ID=Msa0063490-mRNA-1:cds;Parent=Msa0063490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
